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Posted to dev@taverna.apache.org by Upeksha Iwanthi <up...@gmail.com> on 2017/07/07 18:46:12 UTC

Re: TAVERNA-550

Hi Thilina,

Thank you for your reply. I went through the documentation that you sent me. It as helpful and I hope some help further to work on this issue. I already get the source code of taverna-workbench but I didn't get the source code of taverna-common-activities. I thought that building only source code of taverna-workbench is enough. I tried yo build the project with maven but it not build successful and gave errors. Actually I need some help for that.

regards,
Upeksha.

Re: TAVERNA-550

Posted by Thilina Manamgoda <ma...@gmail.com>.
Hi,

This failure is caused by taverna-app-configuration-impl module where
"taverna.app.startup" system property is not initialized at runtime. This
is the implementation
<https://github.com/apache/incubator-taverna-osgi/blob/master/taverna-app-configuration-impl/src/main/java/org/apache/taverna/configuration/app/impl/ApplicationConfigurationImpl.java#L58>.
I cannot find where is this system property is being initialized ?

regards,
Thilina

On Tue, Jul 11, 2017 at 8:45 PM, Ian Dunlop <ia...@gmail.com> wrote:

> Hello,
>
> I tried building the tavern-workbench on Windows 10 and Linux and got a
> different set of failures from you. This was with a fresh clone of
> https://github.com/apache/incubator-taverna-workbench.
>
> Using:
> Apache Maven 3.5.0 (ff8f5e7444045639af65f6095c62210b5713f426;
> 2017-04-03T20:39:06+01:00)
> Maven home: C:\Program Files\apache-maven-3.5.0\bin\..
> Java version: 1.8.0_131, vendor: Oracle Corporation
> Java home: C:\Program Files\Java\jdk1.8.0_131\jre
> Default locale: en_GB, platform encoding: Cp1252
> OS name: "windows 10", version: "10.0", arch: "amd64", family: "windows"
>
> "mvn clean install" stack trace:
>
> -------------------------------------------------------
>  T E S T S
> -------------------------------------------------------
> Running
> org.apache.taverna.workbench.ui.impl.configuration.colour.
> ColourManagerTest
> Tests run: 3, Failures: 0, Errors: 3, Skipped: 0, Time elapsed: 0.074 sec
> <<< FAILURE! - in
> org.apache.taverna.workbench.ui.impl.configuration.colour.
> ColourManagerTest
> saveAsWrongArrayType(org.apache.taverna.workbench.ui.
> impl.configuration.colour.ColourManagerTest)
> Time elapsed: 0.038 sec  <<< ERROR!
> java.lang.NullPointerException
>         at
> org.apache.taverna.workbench.ui.impl.configuration.colour.
> ColourManagerTest.setup(ColourManagerTest.java:45)
> testConfigurableness(org.apache.taverna.workbench.ui.
> impl.configuration.colour.ColourManagerTest)
> Time elapsed: 0 sec  <<< ERROR!
> java.lang.NullPointerException
>         at
> org.apache.taverna.workbench.ui.impl.configuration.colour.
> ColourManagerTest.setup(ColourManagerTest.java:45)
> testGetPreferredColourEqualsWhite(org.apache.taverna.workbench.ui.impl.
> configuration.colour.ColourManagerTest)
> Time elapsed: 0 sec  <<< ERROR!
> java.lang.NullPointerException
>         at
> org.apache.taverna.workbench.ui.impl.configuration.colour.
> ColourManagerTest.setup(ColourManagerTest.java:45)
> Running
> org.apache.taverna.workbench.ui.impl.configuration.
> ConfigurationManagerTest
> Tests run: 3, Failures: 0, Errors: 2, Skipped: 1, Time elapsed: 0.001 sec
> <<< FAILURE! - in
> org.apache.taverna.workbench.ui.impl.configuration.
> ConfigurationManagerTest
> saveColoursForDummyColourable(org.apache.taverna.workbench.
> ui.impl.configuration.ConfigurationManagerTest)
> Time elapsed: 0 sec  <<< ERROR!
> java.lang.NullPointerException
>         at
> org.apache.taverna.workbench.ui.impl.configuration.
> ConfigurationManagerTest.setup(ConfigurationManagerTest.java:43)
> createConfigManager(org.apache.taverna.workbench.ui.impl.configuration.
> ConfigurationManagerTest)
> Time elapsed: 0 sec  <<< ERROR!
> java.lang.NullPointerException
>         at
> org.apache.taverna.workbench.ui.impl.configuration.
> ConfigurationManagerTest.setup(ConfigurationManagerTest.java:43)
>
> Results :
> Tests in error:
>   ConfigurationManagerTest.setup:43 ╗ NullPointer
>   ConfigurationManagerTest.setup:43 ╗ NullPointer
>   ColourManagerTest.setup:45 ╗ NullPointer
>   ColourManagerTest.setup:45 ╗ NullPointer
>   ColourManagerTest.setup:45 ╗ NullPointer
> Tests run: 6, Failures: 0, Errors: 5, Skipped: 1
> [INFO]
> ------------------------------------------------------------------------
> [INFO] Reactor Summary:
> [INFO]
> [INFO] Apache Taverna Workbench ........................... SUCCESS [
> 0.969 s]
> [INFO] Apache Taverna Activity icon manager API ........... SUCCESS [
> 7.361 s]
> [INFO] Apache Taverna Workbench API ....................... SUCCESS [
> 1.257 s]
> [INFO] Apache Taverna Edits API ........................... SUCCESS [
> 10.675 s]
> [INFO] Apache Taverna BeanInfo extensions ................. SUCCESS [
> 0.757 s]
> [INFO] Apache Taverna Activity Palette API ................ SUCCESS [
> 12.074 s]
> [INFO] Apache Taverna Configuration Management UI API ..... SUCCESS [
> 0.783 s]
> [INFO] Apache Taverna User interface (Swing) utilities .... SUCCESS [
> 1.595 s]
> [INFO] Apache Taverna File opening API .................... SUCCESS [
> 2.089 s]
> [INFO] Apache Taverna Help System ......................... SUCCESS [
> 15.279 s]
> [INFO] Apache Taverna Contextual Views API ................ SUCCESS [
> 28.257 s]
> [INFO] Apache Taverna Selection API ....................... SUCCESS [
> 1.765 s]
> [INFO] Apache Taverna Menu generation API ................. SUCCESS [
> 2.481 s]
> [INFO] Apache Taverna Design UI ........................... SUCCESS [
> 2.589 s]
> [INFO] Apache Taverna Workflow View ....................... SUCCESS [
> 2.840 s]
> [INFO] Apache Taverna IO utility classes .................. SUCCESS [
> 0.663 s]
> [INFO] Apache Batik OSGi .................................. SUCCESS [01:14
> min]
> [INFO] Apache Taverna Graph Model ......................... SUCCESS [
> 19.067 s]
> [INFO] Apache Taverna Graph View .......................... SUCCESS [
> 3.191 s]
> [INFO] Apache Taverna Activity tools ...................... SUCCESS [
> 1.750 s]
> [INFO] Apache Taverna Edits implementation ................ SUCCESS [
> 2.903 s]
> [INFO] Apache Taverna File opening implementation ......... SUCCESS [
> 31.991 s]
> [INFO] Apache Taverna Dataflow Activity UI ................ SUCCESS [
> 3.972 s]
> [INFO] Apache Taverna StringConstant Activity UI .......... SUCCESS [
> 3.561 s]
> [INFO] Apache Taverna Contextual Views Impl ............... SUCCESS [
> 18.278 s]
> [INFO] Apache Taverna Unrecognized Activity UI ............ SUCCESS [
> 2.527 s]
> [INFO] Apache Taverna Activity Palette Impl ............... SUCCESS [
> 21.014 s]
> [INFO] Apache Taverna UI builder .......................... SUCCESS [
> 1.100 s]
> [INFO] Apache Taverna Activity Palette UI Component ....... SUCCESS [
> 3.054 s]
> [INFO] Apache Taverna Configuration Management UI Impl .... FAILURE [
> 1.318 s]
>
> Cheers,
>
> Ian
>
> On 9 July 2017 at 17:02, Upeksha Iwanthi <up...@gmail.com> wrote:
>
> > Hello Alan,
> >
> > I took some screen shots when I got errors while build the TAVERNA
> > workbench. I uploded them on Google Drive and links are bellow.
> >
> > https://drive.google.com/file/d/0B_xQD3NigqdwLW5JTTN3NUhOYjQ/
> > view?usp=sharing
> >
> > https://drive.google.com/file/d/0B_xQD3NigqdwMlhlbEJpZHhyd2c/
> > view?usp=sharing
> >
> > regards,
> > Upeksha.
> >
>

Re: TAVERNA-550

Posted by Ian Dunlop <ia...@gmail.com>.
Hello,

I tried building the tavern-workbench on Windows 10 and Linux and got a
different set of failures from you. This was with a fresh clone of
https://github.com/apache/incubator-taverna-workbench.

Using:
Apache Maven 3.5.0 (ff8f5e7444045639af65f6095c62210b5713f426;
2017-04-03T20:39:06+01:00)
Maven home: C:\Program Files\apache-maven-3.5.0\bin\..
Java version: 1.8.0_131, vendor: Oracle Corporation
Java home: C:\Program Files\Java\jdk1.8.0_131\jre
Default locale: en_GB, platform encoding: Cp1252
OS name: "windows 10", version: "10.0", arch: "amd64", family: "windows"

"mvn clean install" stack trace:

-------------------------------------------------------
 T E S T S
-------------------------------------------------------
Running
org.apache.taverna.workbench.ui.impl.configuration.colour.ColourManagerTest
Tests run: 3, Failures: 0, Errors: 3, Skipped: 0, Time elapsed: 0.074 sec
<<< FAILURE! - in
org.apache.taverna.workbench.ui.impl.configuration.colour.ColourManagerTest
saveAsWrongArrayType(org.apache.taverna.workbench.ui.impl.configuration.colour.ColourManagerTest)
Time elapsed: 0.038 sec  <<< ERROR!
java.lang.NullPointerException
        at
org.apache.taverna.workbench.ui.impl.configuration.colour.ColourManagerTest.setup(ColourManagerTest.java:45)
testConfigurableness(org.apache.taverna.workbench.ui.impl.configuration.colour.ColourManagerTest)
Time elapsed: 0 sec  <<< ERROR!
java.lang.NullPointerException
        at
org.apache.taverna.workbench.ui.impl.configuration.colour.ColourManagerTest.setup(ColourManagerTest.java:45)
testGetPreferredColourEqualsWhite(org.apache.taverna.workbench.ui.impl.configuration.colour.ColourManagerTest)
Time elapsed: 0 sec  <<< ERROR!
java.lang.NullPointerException
        at
org.apache.taverna.workbench.ui.impl.configuration.colour.ColourManagerTest.setup(ColourManagerTest.java:45)
Running
org.apache.taverna.workbench.ui.impl.configuration.ConfigurationManagerTest
Tests run: 3, Failures: 0, Errors: 2, Skipped: 1, Time elapsed: 0.001 sec
<<< FAILURE! - in
org.apache.taverna.workbench.ui.impl.configuration.ConfigurationManagerTest
saveColoursForDummyColourable(org.apache.taverna.workbench.ui.impl.configuration.ConfigurationManagerTest)
Time elapsed: 0 sec  <<< ERROR!
java.lang.NullPointerException
        at
org.apache.taverna.workbench.ui.impl.configuration.ConfigurationManagerTest.setup(ConfigurationManagerTest.java:43)
createConfigManager(org.apache.taverna.workbench.ui.impl.configuration.ConfigurationManagerTest)
Time elapsed: 0 sec  <<< ERROR!
java.lang.NullPointerException
        at
org.apache.taverna.workbench.ui.impl.configuration.ConfigurationManagerTest.setup(ConfigurationManagerTest.java:43)

Results :
Tests in error:
  ConfigurationManagerTest.setup:43 ╗ NullPointer
  ConfigurationManagerTest.setup:43 ╗ NullPointer
  ColourManagerTest.setup:45 ╗ NullPointer
  ColourManagerTest.setup:45 ╗ NullPointer
  ColourManagerTest.setup:45 ╗ NullPointer
Tests run: 6, Failures: 0, Errors: 5, Skipped: 1
[INFO]
------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache Taverna Workbench ........................... SUCCESS [
0.969 s]
[INFO] Apache Taverna Activity icon manager API ........... SUCCESS [
7.361 s]
[INFO] Apache Taverna Workbench API ....................... SUCCESS [
1.257 s]
[INFO] Apache Taverna Edits API ........................... SUCCESS [
10.675 s]
[INFO] Apache Taverna BeanInfo extensions ................. SUCCESS [
0.757 s]
[INFO] Apache Taverna Activity Palette API ................ SUCCESS [
12.074 s]
[INFO] Apache Taverna Configuration Management UI API ..... SUCCESS [
0.783 s]
[INFO] Apache Taverna User interface (Swing) utilities .... SUCCESS [
1.595 s]
[INFO] Apache Taverna File opening API .................... SUCCESS [
2.089 s]
[INFO] Apache Taverna Help System ......................... SUCCESS [
15.279 s]
[INFO] Apache Taverna Contextual Views API ................ SUCCESS [
28.257 s]
[INFO] Apache Taverna Selection API ....................... SUCCESS [
1.765 s]
[INFO] Apache Taverna Menu generation API ................. SUCCESS [
2.481 s]
[INFO] Apache Taverna Design UI ........................... SUCCESS [
2.589 s]
[INFO] Apache Taverna Workflow View ....................... SUCCESS [
2.840 s]
[INFO] Apache Taverna IO utility classes .................. SUCCESS [
0.663 s]
[INFO] Apache Batik OSGi .................................. SUCCESS [01:14
min]
[INFO] Apache Taverna Graph Model ......................... SUCCESS [
19.067 s]
[INFO] Apache Taverna Graph View .......................... SUCCESS [
3.191 s]
[INFO] Apache Taverna Activity tools ...................... SUCCESS [
1.750 s]
[INFO] Apache Taverna Edits implementation ................ SUCCESS [
2.903 s]
[INFO] Apache Taverna File opening implementation ......... SUCCESS [
31.991 s]
[INFO] Apache Taverna Dataflow Activity UI ................ SUCCESS [
3.972 s]
[INFO] Apache Taverna StringConstant Activity UI .......... SUCCESS [
3.561 s]
[INFO] Apache Taverna Contextual Views Impl ............... SUCCESS [
18.278 s]
[INFO] Apache Taverna Unrecognized Activity UI ............ SUCCESS [
2.527 s]
[INFO] Apache Taverna Activity Palette Impl ............... SUCCESS [
21.014 s]
[INFO] Apache Taverna UI builder .......................... SUCCESS [
1.100 s]
[INFO] Apache Taverna Activity Palette UI Component ....... SUCCESS [
3.054 s]
[INFO] Apache Taverna Configuration Management UI Impl .... FAILURE [
1.318 s]

Cheers,

Ian

On 9 July 2017 at 17:02, Upeksha Iwanthi <up...@gmail.com> wrote:

> Hello Alan,
>
> I took some screen shots when I got errors while build the TAVERNA
> workbench. I uploded them on Google Drive and links are bellow.
>
> https://drive.google.com/file/d/0B_xQD3NigqdwLW5JTTN3NUhOYjQ/
> view?usp=sharing
>
> https://drive.google.com/file/d/0B_xQD3NigqdwMlhlbEJpZHhyd2c/
> view?usp=sharing
>
> regards,
> Upeksha.
>

Re: TAVERNA-550

Posted by Upeksha Iwanthi <up...@gmail.com>.
Hello Alan,

I took some screen shots when I got errors while build the TAVERNA workbench. I uploded them on Google Drive and links are bellow.

https://drive.google.com/file/d/0B_xQD3NigqdwLW5JTTN3NUhOYjQ/view?usp=sharing

https://drive.google.com/file/d/0B_xQD3NigqdwMlhlbEJpZHhyd2c/view?usp=sharing

regards,
Upeksha.

Re: TAVERNA-550

Posted by Alan Williams <al...@googlemail.com>.
On 07-Jul-17 19:46, Upeksha Iwanthi wrote:
> Hi Thilina,

Hello Upeksha

> Thank you for your reply. I went through the documentation that you
sent me. It as helpful and I hope some help further to work on this
issue. I already get the source code of taverna-workbench but I didn't
get the source code of taverna-common-activities. I thought that
building only source code of taverna-workbench is enough. I tried yo
build the project with maven but it not build successful and gave
errors. Actually I need some help for that.

Welcome to Taverna :)

When you have errors, you need to give enough information to try to 
solve the problem(s). A good way would be to include the errors that you 
get. It is OK to post that to this list; then everyone can help.

Welcome again

> regards,
> Upeksha.

Alan