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Posted to commits@commons.apache.org by er...@apache.org on 2021/05/29 07:46:01 UTC
[commons-math] branch master updated (d080f0d -> 8441d3f)
This is an automated email from the ASF dual-hosted git repository.
erans pushed a change to branch master
in repository https://gitbox.apache.org/repos/asf/commons-math.git.
from d080f0d Remove links to outdated releases from web site "download" page.
add 9d1741b Modularization.
add ac978e2 Typo.
add 1c4e414 Remove unused/outdated file.
add 9fca795 Set up module for example applications.
add 5e59617 MATH-1578: Modularization.
add 44281ee Ordering of modules in POM.
add 92094a0 MATH-1582: Modularization.
add 1b5a9a6 Unnecessary section in POM.
add 7e219ce Move normalization specifiers into their respective corresponding class.
add 00e80fe Javadoc.
add d206737 Update modules list.
add 7f38341 MATH-1533: Javadoc explaining that the issue is actually not a problem.
add ad5f0da MATH-1536: Let unit tests use random seeds (and allow a few retries on failure).
add 35d56cc MATH-1581: Removed "hash" methods.
add 8157678 MATH-1581: Removed "copySign" methods.
add f885cb0 Generic constructor syntax.
add eedd0b8 MATH-1581: Removed "equals" method.
add 0cfc410 MATH-1583: Move "min" and "max" to "RealFieldElement".
add 4bb1787 Unused "import" statements.
add 9087575 Reuse constant defined in "Commons Numbers".
add a4c8c52 Move constant declaration to where it is actually used.
add 23c0294 MATH-1584: Move "MathUtils.check..." functions to associated exception class.
add 144cb12 Unused "import".
add d056c03 MATH-1584: Unit tests.
add 3dd57c9 Use preferred names.
add ed43735 Use "final"; reuse already computed value.
add fcc47a2 Code reuse.
add 8df971c Use functionality defined in "Commons Numbers".
add 2650a47 Unused "import".
add 0e81847 Remove unused class.
add 0466b29 Use new API.
add d92a3c6 MATH-1588: Fit into JDK 8 "function" API.
add f29d5c9 MATH-1453: mannWhitneyU return minimum value for U
add b416ae5 MATH-1586: Moved classes that are only used by a single package over to that package
add 1f1872f Reduce failure frequency (unit test).
add 450cb5e Remove implementation classes from public API.
add 2977d26 Renamed "PivotingStrategyInterface" to "PivotingStrategy".
add bab2a8b MATH-1411: Relaxing tolerance.
add 9146f7a Remove implementation classes from public API.
add 1d9670c MATH-1172: "SimpleCurveFitter" as parent class for curve fitter implementations.
add 8441d3f Removed dependency on "UncorrelatedRandomVectorGenerator" (unit test).
No new revisions were added by this update.
Summary of changes:
LICENSE.txt => LICENSE | 0
NOTICE.txt => NOTICE | 0
RELEASE-NOTES.txt | 25 -
build.xml | 376 --
LICENSE.txt => commons-math-examples/LICENCE | 0
NOTICE.txt => commons-math-examples/NOTICE | 0
.../examples-sofm/LICENCE | 0
.../examples-sofm/NOTICE | 0
.../examples-sofm/chinese-rings/LICENCE | 0
.../examples-sofm/chinese-rings/NOTICE | 0
.../examples-sofm/chinese-rings/pom.xml | 64 +
.../examples/sofm/chineserings/ChineseRings.java | 153 +
.../sofm/chineserings/ChineseRingsClassifier.java | 191 +
.../examples/sofm/chineserings/StandAlone.java | 117 +
commons-math-examples/examples-sofm/pom.xml | 58 +
.../examples/neuralnet/sofm/tsp/StandAlone.java | 41 +
.../examples-sofm/tsp/LICENCE | 0
.../examples-sofm/tsp/NOTICE | 0
commons-math-examples/examples-sofm/tsp/pom.xml | 50 +
.../commons/math4/examples/sofm/tsp/City.java | 185 +
.../math4/examples/sofm/tsp/StandAlone.java | 162 +
.../sofm/tsp/TravellingSalesmanSolver.java | 331 ++
commons-math-examples/pom.xml | 155 +
LICENSE.txt => commons-math-legacy/LICENCE | 0
NOTICE.txt => commons-math-legacy/NOTICE | 0
commons-math-legacy/pom.xml | 142 +
.../org/apache/commons/math4/legacy/Field.java | 58 +
.../apache/commons/math4/legacy/FieldElement.java | 87 +
.../commons/math4/legacy/RealFieldElement.java | 421 ++
.../math4/legacy/analysis/BivariateFunction.java | 43 +
.../math4/legacy/analysis/FunctionUtils.java | 507 ++
.../legacy/analysis/MultivariateFunction.java | 42 +
.../analysis/MultivariateMatrixFunction.java | 35 +
.../analysis/MultivariateVectorFunction.java | 35 +
.../analysis/ParametricUnivariateFunction.java | 44 +
.../analysis/RealFieldUnivariateFunction.java | 86 +
.../math4/legacy/analysis/TrivariateFunction.java | 35 +
.../math4/legacy/analysis/UnivariateFunction.java | 89 +
.../legacy/analysis/UnivariateMatrixFunction.java | 33 +
.../legacy/analysis/UnivariateVectorFunction.java | 33 +
.../analysis/differentiation/DSCompiler.java | 1834 ++++++
.../differentiation/DerivativeStructure.java | 1256 ++++
.../FiniteDifferencesDifferentiator.java | 393 ++
.../analysis/differentiation/GradientFunction.java | 66 +
.../analysis/differentiation/JacobianFunction.java | 70 +
.../MultivariateDifferentiableFunction.java | 42 +
.../MultivariateDifferentiableVectorFunction.java | 43 +
.../analysis/differentiation/SparseGradient.java | 936 +++
.../UnivariateDifferentiableFunction.java | 43 +
.../UnivariateDifferentiableMatrixFunction.java | 40 +
.../UnivariateDifferentiableVectorFunction.java | 40 +
.../UnivariateFunctionDifferentiator.java | 33 +
.../UnivariateMatrixFunctionDifferentiator.java | 33 +
.../UnivariateVectorFunctionDifferentiator.java | 33 +
.../analysis/differentiation/package-info.java | 42 +
.../math4/legacy/analysis/function/Abs.java | 34 +
.../math4/legacy/analysis/function/Acos.java | 44 +
.../math4/legacy/analysis/function/Acosh.java | 44 +
.../math4/legacy/analysis/function/Add.java | 33 +
.../math4/legacy/analysis/function/Asin.java | 44 +
.../math4/legacy/analysis/function/Asinh.java | 44 +
.../math4/legacy/analysis/function/Atan.java | 44 +
.../math4/legacy/analysis/function/Atan2.java | 34 +
.../math4/legacy/analysis/function/Atanh.java | 44 +
.../math4/legacy/analysis/function/Cbrt.java | 44 +
.../math4/legacy/analysis/function/Ceil.java | 34 +
.../math4/legacy/analysis/function/Constant.java | 53 +
.../math4/legacy/analysis/function/Cos.java | 44 +
.../math4/legacy/analysis/function/Cosh.java | 44 +
.../math4/legacy/analysis/function/Divide.java | 33 +
.../math4/legacy/analysis/function/Exp.java | 44 +
.../math4/legacy/analysis/function/Expm1.java | 44 +
.../math4/legacy/analysis/function/Floor.java | 34 +
.../math4/legacy/analysis/function/Gaussian.java | 252 +
.../analysis/function/HarmonicOscillator.java | 176 +
.../math4/legacy/analysis/function/Identity.java | 43 +
.../math4/legacy/analysis/function/Inverse.java | 43 +
.../math4/legacy/analysis/function/Log.java | 44 +
.../math4/legacy/analysis/function/Log10.java | 45 +
.../math4/legacy/analysis/function/Log1p.java | 44 +
.../math4/legacy/analysis/function/Logistic.java | 221 +
.../math4/legacy/analysis/function/Logit.java | 205 +
.../math4/legacy/analysis/function/Max.java | 34 +
.../math4/legacy/analysis/function/Min.java | 34 +
.../math4/legacy/analysis/function/Minus.java | 43 +
.../math4/legacy/analysis/function/Multiply.java | 33 +
.../math4/legacy/analysis/function/Pow.java | 34 +
.../math4/legacy/analysis/function/Power.java | 54 +
.../math4/legacy/analysis/function/Rint.java | 34 +
.../math4/legacy/analysis/function/Sigmoid.java | 211 +
.../math4/legacy/analysis/function/Signum.java | 34 +
.../math4/legacy/analysis/function/Sin.java | 44 +
.../math4/legacy/analysis/function/Sinc.java | 196 +
.../math4/legacy/analysis/function/Sinh.java | 44 +
.../math4/legacy/analysis/function/Sqrt.java | 44 +
.../legacy/analysis/function/StepFunction.java | 102 +
.../math4/legacy/analysis/function/Subtract.java | 33 +
.../math4/legacy/analysis/function/Tan.java | 44 +
.../math4/legacy/analysis/function/Tanh.java | 44 +
.../math4/legacy/analysis/function/Ulp.java | 34 +
.../legacy/analysis/function/package-info.java | 26 +
.../BaseAbstractUnivariateIntegrator.java | 272 +
.../IterativeLegendreGaussIntegrator.java | 178 +
.../analysis/integration/MidPointIntegrator.java | 166 +
.../analysis/integration/RombergIntegrator.java | 134 +
.../analysis/integration/SimpsonIntegrator.java | 120 +
.../analysis/integration/TrapezoidIntegrator.java | 154 +
.../analysis/integration/UnivariateIntegrator.java | 88 +
.../integration/gauss/BaseRuleFactory.java | 151 +
.../integration/gauss/GaussIntegrator.java | 126 +
.../integration/gauss/GaussIntegratorFactory.java | 181 +
.../integration/gauss/HermiteRuleFactory.java | 174 +
.../integration/gauss/LaguerreRuleFactory.java | 81 +
.../gauss/LegendreHighPrecisionRuleFactory.java | 212 +
.../integration/gauss/LegendreRuleFactory.java | 137 +
.../gauss/SymmetricGaussIntegrator.java | 99 +
.../analysis/integration/gauss/package-info.java | 22 +
.../legacy/analysis/integration/package-info.java | 22 +
.../interpolation/AkimaSplineInterpolator.java | 248 +
.../BicubicInterpolatingFunction.java | 329 ++
.../interpolation/BicubicInterpolator.java | 114 +
.../interpolation/BivariateGridInterpolator.java | 51 +
.../DividedDifferenceInterpolator.java | 122 +
.../interpolation/FieldHermiteInterpolator.java | 209 +
.../interpolation/HermiteInterpolator.java | 242 +
.../interpolation/InterpolatingMicrosphere.java | 387 ++
.../interpolation/InterpolatingMicrosphere2D.java | 87 +
.../analysis/interpolation/LinearInterpolator.java | 80 +
.../analysis/interpolation/LoessInterpolator.java | 460 ++
.../MicrosphereProjectionInterpolator.java | 168 +
.../interpolation/MultivariateInterpolator.java | 51 +
.../interpolation/NevilleInterpolator.java | 61 +
...iecewiseBicubicSplineInterpolatingFunction.java | 212 +
.../PiecewiseBicubicSplineInterpolator.java | 62 +
.../analysis/interpolation/SplineInterpolator.java | 137 +
.../TricubicInterpolatingFunction.java | 509 ++
.../interpolation/TricubicInterpolator.java | 144 +
.../interpolation/TrivariateGridInterpolator.java | 54 +
.../interpolation/UnivariateInterpolator.java | 41 +
.../UnivariatePeriodicInterpolator.java | 128 +
.../analysis/interpolation/package-info.java | 22 +
.../math4/legacy/analysis/package-info.java | 32 +
.../analysis/polynomials/PolynomialFunction.java | 405 ++
.../PolynomialFunctionLagrangeForm.java | 327 ++
.../polynomials/PolynomialFunctionNewtonForm.java | 246 +
.../polynomials/PolynomialSplineFunction.java | 237 +
.../analysis/polynomials/PolynomialsUtils.java | 454 ++
.../legacy/analysis/polynomials/package-info.java | 23 +
.../analysis/solvers/AbstractPolynomialSolver.java | 80 +
.../AbstractUnivariateDifferentiableSolver.java | 82 +
.../analysis/solvers/AbstractUnivariateSolver.java | 60 +
.../legacy/analysis/solvers/AllowedSolution.java | 75 +
.../solvers/BaseAbstractUnivariateSolver.java | 313 +
.../legacy/analysis/solvers/BaseSecantSolver.java | 280 +
.../analysis/solvers/BaseUnivariateSolver.java | 142 +
.../legacy/analysis/solvers/BisectionSolver.java | 91 +
.../BracketedRealFieldUnivariateSolver.java | 142 +
.../solvers/BracketedUnivariateSolver.java | 92 +
.../solvers/BracketingNthOrderBrentSolver.java | 413 ++
.../math4/legacy/analysis/solvers/BrentSolver.java | 109 +
.../FieldBracketingNthOrderBrentSolver.java | 452 ++
.../legacy/analysis/solvers/IllinoisSolver.java | 82 +
.../legacy/analysis/solvers/LaguerreSolver.java | 384 ++
.../legacy/analysis/solvers/MullerSolver.java | 202 +
.../legacy/analysis/solvers/MullerSolver2.java | 168 +
.../analysis/solvers/NewtonRaphsonSolver.java | 92 +
.../legacy/analysis/solvers/PegasusSolver.java | 84 +
.../legacy/analysis/solvers/PolynomialSolver.java | 28 +
.../legacy/analysis/solvers/RegulaFalsiSolver.java | 94 +
.../legacy/analysis/solvers/RiddersSolver.java | 142 +
.../legacy/analysis/solvers/SecantSolver.java | 135 +
.../solvers/UnivariateDifferentiableSolver.java | 29 +
.../legacy/analysis/solvers/UnivariateSolver.java | 28 +
.../analysis/solvers/UnivariateSolverUtils.java | 467 ++
.../legacy/analysis/solvers/package-info.java | 22 +
.../math4/legacy/complex/ComplexFormat.java | 428 ++
.../commons/math4/legacy/complex/package-info.java | 23 +
.../org/apache/commons/math4/legacy/dfp/Dfp.java | 2928 ++++++++++
.../apache/commons/math4/legacy/dfp/DfpDec.java | 368 ++
.../apache/commons/math4/legacy/dfp/DfpField.java | 762 +++
.../apache/commons/math4/legacy/dfp/DfpMath.java | 965 +++
.../commons/math4/legacy/dfp/package-info.java | 88 +
.../distribution/AbstractIntegerDistribution.java | 228 +
.../AbstractMultivariateRealDistribution.java | 72 +
.../distribution/AbstractRealDistribution.java | 278 +
.../legacy/distribution/EmpiricalDistribution.java | 752 +++
.../distribution/EnumeratedDistribution.java | 268 +
.../EnumeratedIntegerDistribution.java | 251 +
.../distribution/EnumeratedRealDistribution.java | 294 +
.../MixtureMultivariateNormalDistribution.java | 91 +
.../MixtureMultivariateRealDistribution.java | 166 +
.../MultivariateNormalDistribution.java | 225 +
.../distribution/MultivariateRealDistribution.java | 77 +
...ariateNormalMixtureExpectationMaximization.java | 455 ++
.../legacy/distribution/fitting/package-info.java | 20 +
.../math4/legacy/distribution/package-info.java | 21 +
.../legacy/exception/ConvergenceException.java | 49 +
.../exception/DimensionMismatchException.java | 64 +
.../exception/InsufficientDataException.java | 49 +
.../legacy/exception/MathArithmeticException.java | 52 +
.../exception/MathIllegalArgumentException.java | 41 +
.../exception/MathIllegalNumberException.java | 60 +
.../exception/MathIllegalStateException.java | 63 +
.../math4/legacy/exception/MathInternalError.java | 57 +
.../math4/legacy/exception/MathParseException.java | 51 +
.../legacy/exception/MathRuntimeException.java | 80 +
.../MathUnsupportedOperationException.java | 49 +
.../exception/MaxCountExceededException.java | 63 +
.../exception/MultiDimensionMismatchException.java | 90 +
.../legacy/exception/NoBracketingException.java | 106 +
.../math4/legacy/exception/NoDataException.java | 46 +
.../exception/NonMonotonicSequenceException.java | 120 +
.../legacy/exception/NotANumberException.java | 37 +
.../legacy/exception/NotFiniteNumberException.java | 85 +
.../legacy/exception/NotPositiveException.java | 48 +
.../exception/NotStrictlyPositiveException.java | 49 +
.../legacy/exception/NullArgumentException.java | 111 +
.../exception/NumberIsTooLargeException.java | 85 +
.../exception/NumberIsTooSmallException.java | 86 +
.../legacy/exception/OutOfRangeException.java | 79 +
.../exception/TooManyEvaluationsException.java | 39 +
.../exception/TooManyIterationsException.java | 39 +
.../math4/legacy/exception/ZeroException.java | 48 +
.../math4/legacy/exception/package-info.java | 23 +
.../math4/legacy/exception/util/ArgUtils.java | 54 +
.../legacy/exception/util/DummyLocalizable.java | 59 +
.../legacy/exception/util/ExceptionContext.java | 334 ++
.../exception/util/ExceptionContextProvider.java | 33 +
.../math4/legacy/exception/util/Localizable.java | 43 +
.../legacy/exception/util/LocalizedFormats.java | 417 ++
.../math4/legacy/exception/util/package-info.java | 22 +
.../field/linalg/FieldDecompositionSolver.java | 57 +
.../legacy/field/linalg/FieldDenseMatrix.java | 354 ++
.../legacy/field/linalg/FieldLUDecomposition.java | 359 ++
.../math4/legacy/field/linalg/package-info.java | 21 +
.../commons/math4/legacy/field/package-info.java | 22 +
.../legacy/filter/DefaultMeasurementModel.java | 86 +
.../math4/legacy/filter/DefaultProcessModel.java | 170 +
.../commons/math4/legacy/filter/KalmanFilter.java | 387 ++
.../math4/legacy/filter/MeasurementModel.java | 44 +
.../commons/math4/legacy/filter/ProcessModel.java | 73 +
.../commons/math4/legacy/filter/package-info.java | 20 +
.../math4/legacy/fitting/AbstractCurveFitter.java | 139 +
.../math4/legacy/fitting/GaussianCurveFitter.java | 181 +
.../math4/legacy/fitting/HarmonicCurveFitter.java | 333 ++
.../legacy/fitting/PolynomialCurveFitter.java | 65 +
.../math4/legacy/fitting/SimpleCurveFitter.java | 328 ++
.../legacy/fitting/WeightedObservedPoint.java | 78 +
.../legacy/fitting/WeightedObservedPoints.java | 112 +
.../fitting/leastsquares/AbstractEvaluation.java | 101 +
.../leastsquares/DenseWeightedEvaluation.java | 71 +
...entiatorVectorMultivariateJacobianFunction.java | 95 +
.../fitting/leastsquares/EvaluationRmsChecker.java | 76 +
.../fitting/leastsquares/GaussNewtonOptimizer.java | 300 +
.../fitting/leastsquares/LeastSquaresAdapter.java | 84 +
.../fitting/leastsquares/LeastSquaresBuilder.java | 226 +
.../fitting/leastsquares/LeastSquaresFactory.java | 541 ++
.../leastsquares/LeastSquaresOptimizer.java | 62 +
.../fitting/leastsquares/LeastSquaresProblem.java | 174 +
.../leastsquares/LevenbergMarquardtOptimizer.java | 1043 ++++
.../leastsquares/MultivariateJacobianFunction.java | 39 +
.../legacy/fitting/leastsquares/OptimumImpl.java | 118 +
.../fitting/leastsquares/ParameterValidator.java | 34 +
.../leastsquares/ValueAndJacobianFunction.java | 44 +
.../legacy/fitting/leastsquares/package-info.java | 39 +
.../commons/math4/legacy/fitting/package-info.java | 26 +
.../legacy/genetics/AbstractListChromosome.java | 106 +
.../math4/legacy/genetics/BinaryChromosome.java | 98 +
.../math4/legacy/genetics/BinaryMutation.java | 57 +
.../commons/math4/legacy/genetics/Chromosome.java | 105 +
.../math4/legacy/genetics/ChromosomePair.java | 66 +
.../math4/legacy/genetics/CrossoverPolicy.java | 38 +
.../math4/legacy/genetics/CycleCrossover.java | 182 +
.../legacy/genetics/ElitisticListPopulation.java | 118 +
.../commons/math4/legacy/genetics/Fitness.java | 32 +
.../math4/legacy/genetics/FixedElapsedTime.java | 79 +
.../legacy/genetics/FixedGenerationCount.java | 74 +
.../math4/legacy/genetics/GeneticAlgorithm.java | 232 +
.../genetics/InvalidRepresentationException.java | 42 +
.../math4/legacy/genetics/ListPopulation.java | 201 +
.../math4/legacy/genetics/MutationPolicy.java | 35 +
.../math4/legacy/genetics/NPointCrossover.java | 179 +
.../math4/legacy/genetics/OnePointCrossover.java | 129 +
.../math4/legacy/genetics/OrderedCrossover.java | 151 +
.../legacy/genetics/PermutationChromosome.java | 40 +
.../commons/math4/legacy/genetics/Population.java | 59 +
.../commons/math4/legacy/genetics/RandomKey.java | 300 +
.../math4/legacy/genetics/RandomKeyMutation.java | 55 +
.../math4/legacy/genetics/SelectionPolicy.java | 34 +
.../math4/legacy/genetics/StoppingCondition.java | 33 +
.../math4/legacy/genetics/TournamentSelection.java | 117 +
.../math4/legacy/genetics/UniformCrossover.java | 135 +
.../math4/legacy/genetics/package-info.java | 20 +
.../math4/legacy/linear/AbstractFieldMatrix.java | 1114 ++++
.../math4/legacy/linear/AbstractRealMatrix.java | 1025 ++++
.../commons/math4/legacy/linear/AnyMatrix.java | 97 +
.../math4/legacy/linear/Array2DRowFieldMatrix.java | 611 ++
.../math4/legacy/linear/Array2DRowRealMatrix.java | 588 ++
.../math4/legacy/linear/ArrayFieldVector.java | 1122 ++++
.../math4/legacy/linear/ArrayRealVector.java | 952 +++
.../math4/legacy/linear/BiDiagonalTransformer.java | 380 ++
.../commons/math4/legacy/linear/BigReal.java | 334 ++
.../commons/math4/legacy/linear/BigRealField.java | 86 +
.../math4/legacy/linear/BlockFieldMatrix.java | 1587 +++++
.../math4/legacy/linear/BlockRealMatrix.java | 1579 +++++
.../math4/legacy/linear/CholeskyDecomposition.java | 314 +
.../math4/legacy/linear/ConjugateGradient.java | 233 +
.../math4/legacy/linear/DecompositionSolver.java | 97 +
.../linear/DefaultFieldMatrixChangingVisitor.java | 61 +
.../DefaultFieldMatrixPreservingVisitor.java | 59 +
.../linear/DefaultIterativeLinearSolverEvent.java | 143 +
.../linear/DefaultRealMatrixChangingVisitor.java | 47 +
.../linear/DefaultRealMatrixPreservingVisitor.java | 45 +
.../math4/legacy/linear/DiagonalMatrix.java | 369 ++
.../math4/legacy/linear/EigenDecomposition.java | 942 +++
.../legacy/linear/EigenDecomposition.java_PRINT | 945 +++
.../legacy/linear/FieldDecompositionSolver.java | 75 +
.../math4/legacy/linear/FieldLUDecomposition.java | 448 ++
.../commons/math4/legacy/linear/FieldMatrix.java | 814 +++
.../legacy/linear/FieldMatrixChangingVisitor.java | 57 +
.../linear/FieldMatrixPreservingVisitor.java | 56 +
.../commons/math4/legacy/linear/FieldVector.java | 290 +
.../legacy/linear/FieldVectorChangingVisitor.java | 56 +
.../linear/FieldVectorPreservingVisitor.java | 55 +
.../math4/legacy/linear/HessenbergTransformer.java | 232 +
.../linear/IllConditionedOperatorException.java | 42 +
.../math4/legacy/linear/IterationEvent.java | 57 +
.../math4/legacy/linear/IterationListener.java | 57 +
.../math4/legacy/linear/IterationManager.java | 187 +
.../math4/legacy/linear/IterativeLinearSolver.java | 172 +
.../legacy/linear/IterativeLinearSolverEvent.java | 114 +
.../math4/legacy/linear/JacobiPreconditioner.java | 135 +
.../math4/legacy/linear/LUDecomposition.java | 394 ++
.../linear/MatrixDimensionMismatchException.java | 73 +
.../commons/math4/legacy/linear/MatrixUtils.java | 1025 ++++
.../linear/NonPositiveDefiniteMatrixException.java | 73 +
.../NonPositiveDefiniteOperatorException.java | 43 +
.../linear/NonSelfAdjointOperatorException.java | 46 +
.../legacy/linear/NonSquareMatrixException.java | 41 +
.../legacy/linear/NonSquareOperatorException.java | 40 +
.../legacy/linear/NonSymmetricMatrixException.java | 71 +
.../legacy/linear/OpenIntToDoubleHashMap.java | 598 ++
.../math4/legacy/linear/OpenIntToFieldHashMap.java | 618 ++
.../math4/legacy/linear/OpenMapRealMatrix.java | 307 +
.../math4/legacy/linear/OpenMapRealVector.java | 811 +++
.../PreconditionedIterativeLinearSolver.java | 213 +
.../math4/legacy/linear/QRDecomposition.java | 507 ++
.../math4/legacy/linear/RRQRDecomposition.java | 247 +
.../math4/legacy/linear/RealLinearOperator.java | 109 +
.../commons/math4/legacy/linear/RealMatrix.java | 828 +++
.../legacy/linear/RealMatrixChangingVisitor.java | 55 +
.../math4/legacy/linear/RealMatrixFormat.java | 392 ++
.../legacy/linear/RealMatrixPreservingVisitor.java | 54 +
.../commons/math4/legacy/linear/RealVector.java | 1629 ++++++
.../legacy/linear/RealVectorChangingVisitor.java | 58 +
.../math4/legacy/linear/RealVectorFormat.java | 288 +
.../legacy/linear/RealVectorPreservingVisitor.java | 57 +
.../linear/RectangularCholeskyDecomposition.java | 195 +
.../math4/legacy/linear/SchurTransformer.java | 453 ++
.../legacy/linear/SingularMatrixException.java | 37 +
.../legacy/linear/SingularOperatorException.java | 38 +
.../legacy/linear/SingularValueDecomposition.java | 744 +++
.../math4/legacy/linear/SparseFieldMatrix.java | 186 +
.../math4/legacy/linear/SparseFieldVector.java | 809 +++
.../math4/legacy/linear/SparseRealMatrix.java | 34 +
.../math4/legacy/linear/SparseRealVector.java | 31 +
.../apache/commons/math4/legacy/linear/SymmLQ.java | 1220 ++++
.../legacy/linear/TriDiagonalTransformer.java | 253 +
.../commons/math4/legacy/linear/package-info.java | 20 +
.../legacy/ml/clustering/CentroidCluster.java | 53 +
.../math4/legacy/ml/clustering/Cluster.java | 84 +
.../legacy/ml/clustering/ClusterEvaluator.java | 55 +
.../math4/legacy/ml/clustering/ClusterRanking.java | 39 +
.../math4/legacy/ml/clustering/Clusterable.java | 32 +
.../math4/legacy/ml/clustering/Clusterer.java | 80 +
.../legacy/ml/clustering/DBSCANClusterer.java | 220 +
.../math4/legacy/ml/clustering/DoublePoint.java | 87 +
.../legacy/ml/clustering/FuzzyKMeansClusterer.java | 421 ++
.../ml/clustering/KMeansPlusPlusClusterer.java | 543 ++
.../ml/clustering/MiniBatchKMeansClusterer.java | 301 +
.../clustering/MultiKMeansPlusPlusClusterer.java | 105 +
.../ml/clustering/evaluation/CalinskiHarabasz.java | 171 +
.../evaluation/SumOfClusterVariances.java | 88 +
.../ml/clustering/evaluation/package-info.java | 24 +
.../math4/legacy/ml/clustering/package-info.java | 20 +
.../math4/legacy/ml/distance/CanberraDistance.java | 47 +
.../legacy/ml/distance/ChebyshevDistance.java | 39 +
.../math4/legacy/ml/distance/DistanceMeasure.java | 41 +
.../legacy/ml/distance/EarthMoversDistance.java | 49 +
.../legacy/ml/distance/EuclideanDistance.java | 39 +
.../legacy/ml/distance/ManhattanDistance.java | 39 +
.../math4/legacy/ml/distance/package-info.java | 20 +
.../commons/math4/legacy/ml/package-info.java | 20 +
.../math4/legacy/ode/AbstractFieldIntegrator.java | 467 ++
.../math4/legacy/ode/AbstractIntegrator.java | 471 ++
.../math4/legacy/ode/AbstractParameterizable.java | 76 +
.../legacy/ode/ContinuousOutputFieldModel.java | 345 ++
.../math4/legacy/ode/ContinuousOutputModel.java | 445 ++
.../commons/math4/legacy/ode/EquationsMapper.java | 97 +
.../math4/legacy/ode/ExpandableStatefulODE.java | 330 ++
.../math4/legacy/ode/FieldEquationsMapper.java | 203 +
.../math4/legacy/ode/FieldExpandableODE.java | 147 +
.../commons/math4/legacy/ode/FieldODEState.java | 139 +
.../legacy/ode/FieldODEStateAndDerivative.java | 82 +
.../math4/legacy/ode/FieldSecondaryEquations.java | 75 +
.../math4/legacy/ode/FirstOrderConverter.java | 116 +
.../ode/FirstOrderDifferentialEquations.java | 68 +
.../ode/FirstOrderFieldDifferentialEquations.java | 73 +
.../legacy/ode/FirstOrderFieldIntegrator.java | 188 +
.../math4/legacy/ode/FirstOrderIntegrator.java | 66 +
.../commons/math4/legacy/ode/JacobianMatrices.java | 496 ++
.../legacy/ode/MainStateJacobianProvider.java | 41 +
.../math4/legacy/ode/MultistepFieldIntegrator.java | 455 ++
.../math4/legacy/ode/MultistepIntegrator.java | 465 ++
.../commons/math4/legacy/ode/ODEIntegrator.java | 158 +
.../math4/legacy/ode/ParameterConfiguration.java | 67 +
.../legacy/ode/ParameterJacobianProvider.java | 48 +
.../math4/legacy/ode/ParameterJacobianWrapper.java | 102 +
.../commons/math4/legacy/ode/Parameterizable.java | 42 +
.../commons/math4/legacy/ode/ParameterizedODE.java | 42 +
.../math4/legacy/ode/ParameterizedWrapper.java | 88 +
.../ode/SecondOrderDifferentialEquations.java | 64 +
.../math4/legacy/ode/SecondOrderIntegrator.java | 60 +
.../math4/legacy/ode/SecondaryEquations.java | 61 +
.../legacy/ode/UnknownParameterException.java | 52 +
.../commons/math4/legacy/ode/events/Action.java | 56 +
.../math4/legacy/ode/events/EventFilter.java | 208 +
.../math4/legacy/ode/events/EventHandler.java | 219 +
.../math4/legacy/ode/events/EventState.java | 432 ++
.../math4/legacy/ode/events/FieldEventHandler.java | 180 +
.../math4/legacy/ode/events/FieldEventState.java | 345 ++
.../math4/legacy/ode/events/FilterType.java | 400 ++
.../math4/legacy/ode/events/Transformer.java | 107 +
.../math4/legacy/ode/events/package-info.java | 94 +
.../nonstiff/AdamsBashforthFieldIntegrator.java | 353 ++
.../ode/nonstiff/AdamsBashforthIntegrator.java | 361 ++
.../legacy/ode/nonstiff/AdamsFieldIntegrator.java | 146 +
.../ode/nonstiff/AdamsFieldStepInterpolator.java | 189 +
.../math4/legacy/ode/nonstiff/AdamsIntegrator.java | 136 +
.../ode/nonstiff/AdamsMoultonFieldIntegrator.java | 417 ++
.../ode/nonstiff/AdamsMoultonIntegrator.java | 423 ++
.../nonstiff/AdamsNordsieckFieldTransformer.java | 359 ++
.../ode/nonstiff/AdamsNordsieckTransformer.java | 364 ++
.../nonstiff/AdaptiveStepsizeFieldIntegrator.java | 365 ++
.../ode/nonstiff/AdaptiveStepsizeIntegrator.java | 375 ++
.../ClassicalRungeKuttaFieldIntegrator.java | 113 +
.../ClassicalRungeKuttaFieldStepInterpolator.java | 135 +
.../nonstiff/ClassicalRungeKuttaIntegrator.java | 74 +
.../ClassicalRungeKuttaStepInterpolator.java | 135 +
.../math4/legacy/ode/nonstiff/Decimal64.java | 755 +++
.../math4/legacy/ode/nonstiff/Decimal64Field.java | 64 +
.../nonstiff/DormandPrince54FieldIntegrator.java | 234 +
.../DormandPrince54FieldStepInterpolator.java | 249 +
.../ode/nonstiff/DormandPrince54Integrator.java | 161 +
.../nonstiff/DormandPrince54StepInterpolator.java | 225 +
.../nonstiff/DormandPrince853FieldIntegrator.java | 456 ++
.../DormandPrince853FieldStepInterpolator.java | 302 +
.../ode/nonstiff/DormandPrince853Integrator.java | 286 +
.../nonstiff/DormandPrince853StepInterpolator.java | 501 ++
.../EmbeddedRungeKuttaFieldIntegrator.java | 384 ++
.../ode/nonstiff/EmbeddedRungeKuttaIntegrator.java | 379 ++
.../legacy/ode/nonstiff/EulerFieldIntegrator.java | 99 +
.../ode/nonstiff/EulerFieldStepInterpolator.java | 107 +
.../math4/legacy/ode/nonstiff/EulerIntegrator.java | 72 +
.../legacy/ode/nonstiff/EulerStepInterpolator.java | 101 +
.../ode/nonstiff/FieldButcherArrayProvider.java | 46 +
.../legacy/ode/nonstiff/GillFieldIntegrator.java | 124 +
.../ode/nonstiff/GillFieldStepInterpolator.java | 147 +
.../math4/legacy/ode/nonstiff/GillIntegrator.java | 74 +
.../legacy/ode/nonstiff/GillStepInterpolator.java | 150 +
.../ode/nonstiff/GraggBulirschStoerIntegrator.java | 948 +++
.../GraggBulirschStoerStepInterpolator.java | 406 ++
.../ode/nonstiff/HighamHall54FieldIntegrator.java | 207 +
.../HighamHall54FieldStepInterpolator.java | 116 +
.../ode/nonstiff/HighamHall54Integrator.java | 135 +
.../ode/nonstiff/HighamHall54StepInterpolator.java | 122 +
.../legacy/ode/nonstiff/LutherFieldIntegrator.java | 149 +
.../ode/nonstiff/LutherFieldStepInterpolator.java | 224 +
.../legacy/ode/nonstiff/LutherIntegrator.java | 89 +
.../ode/nonstiff/LutherStepInterpolator.java | 182 +
.../ode/nonstiff/MidpointFieldIntegrator.java | 98 +
.../nonstiff/MidpointFieldStepInterpolator.java | 117 +
.../legacy/ode/nonstiff/MidpointIntegrator.java | 68 +
.../ode/nonstiff/MidpointStepInterpolator.java | 115 +
.../ode/nonstiff/RungeKuttaFieldIntegrator.java | 273 +
.../nonstiff/RungeKuttaFieldStepInterpolator.java | 147 +
.../legacy/ode/nonstiff/RungeKuttaIntegrator.java | 268 +
.../ode/nonstiff/RungeKuttaStepInterpolator.java | 211 +
.../ode/nonstiff/ThreeEighthesFieldIntegrator.java | 112 +
.../ThreeEighthesFieldStepInterpolator.java | 138 +
.../ode/nonstiff/ThreeEighthesIntegrator.java | 71 +
.../nonstiff/ThreeEighthesStepInterpolator.java | 145 +
.../math4/legacy/ode/nonstiff/package-info.java | 25 +
.../commons/math4/legacy/ode/package-info.java | 161 +
.../sampling/AbstractFieldStepInterpolator.java | 175 +
.../ode/sampling/AbstractStepInterpolator.java | 617 ++
.../legacy/ode/sampling/DummyStepHandler.java | 91 +
.../legacy/ode/sampling/FieldFixedStepHandler.java | 69 +
.../legacy/ode/sampling/FieldStepHandler.java | 75 +
.../legacy/ode/sampling/FieldStepInterpolator.java | 76 +
.../legacy/ode/sampling/FieldStepNormalizer.java | 273 +
.../legacy/ode/sampling/FixedStepHandler.java | 71 +
.../ode/sampling/NordsieckStepInterpolator.java | 293 +
.../math4/legacy/ode/sampling/StepHandler.java | 75 +
.../legacy/ode/sampling/StepInterpolator.java | 181 +
.../math4/legacy/ode/sampling/StepNormalizer.java | 300 +
.../legacy/ode/sampling/StepNormalizerBounds.java | 84 +
.../legacy/ode/sampling/StepNormalizerMode.java | 70 +
.../math4/legacy/ode/sampling/package-info.java | 60 +
.../legacy/optim/AbstractConvergenceChecker.java | 70 +
.../legacy/optim/AbstractOptimizationProblem.java | 111 +
.../optim/BaseMultiStartMultivariateOptimizer.java | 230 +
.../legacy/optim/BaseMultivariateOptimizer.java | 155 +
.../commons/math4/legacy/optim/BaseOptimizer.java | 277 +
.../math4/legacy/optim/ConvergenceChecker.java | 55 +
.../commons/math4/legacy/optim/InitialGuess.java | 46 +
.../apache/commons/math4/legacy/optim/MaxEval.java | 61 +
.../apache/commons/math4/legacy/optim/MaxIter.java | 61 +
.../math4/legacy/optim/OptimizationData.java | 28 +
.../math4/legacy/optim/OptimizationProblem.java | 53 +
.../commons/math4/legacy/optim/PointValuePair.java | 122 +
.../math4/legacy/optim/PointVectorValuePair.java | 147 +
.../commons/math4/legacy/optim/SimpleBounds.java | 79 +
.../math4/legacy/optim/SimplePointChecker.java | 133 +
.../math4/legacy/optim/SimpleValueChecker.java | 125 +
.../legacy/optim/SimpleVectorValueChecker.java | 134 +
.../legacy/optim/linear/LinearConstraint.java | 230 +
.../legacy/optim/linear/LinearConstraintSet.java | 62 +
.../optim/linear/LinearObjectiveFunction.java | 151 +
.../math4/legacy/optim/linear/LinearOptimizer.java | 132 +
.../optim/linear/NoFeasibleSolutionException.java | 37 +
.../legacy/optim/linear/NonNegativeConstraint.java | 47 +
.../legacy/optim/linear/PivotSelectionRule.java | 38 +
.../math4/legacy/optim/linear/Relationship.java | 65 +
.../math4/legacy/optim/linear/SimplexSolver.java | 409 ++
.../math4/legacy/optim/linear/SimplexTableau.java | 915 +++
.../legacy/optim/linear/SolutionCallback.java | 62 +
.../optim/linear/UnboundedSolutionException.java | 37 +
.../math4/legacy/optim/linear/package-info.java | 21 +
.../legacy/optim/nonlinear/scalar/GoalType.java | 32 +
.../scalar/GradientMultivariateOptimizer.java | 102 +
.../nonlinear/scalar/LeastSquaresConverter.java | 187 +
.../legacy/optim/nonlinear/scalar/LineSearch.java | 139 +
.../scalar/MultiStartMultivariateOptimizer.java | 113 +
.../scalar/MultivariateFunctionMappingAdapter.java | 303 +
.../scalar/MultivariateFunctionPenaltyAdapter.java | 187 +
.../nonlinear/scalar/MultivariateOptimizer.java | 117 +
.../optim/nonlinear/scalar/ObjectiveFunction.java | 46 +
.../scalar/ObjectiveFunctionGradient.java | 46 +
.../optim/nonlinear/scalar/PopulationSize.java | 50 +
.../math4/legacy/optim/nonlinear/scalar/Sigma.java | 51 +
.../NonLinearConjugateGradientOptimizer.java | 337 ++
.../nonlinear/scalar/gradient/Preconditioner.java | 44 +
.../nonlinear/scalar/gradient/package-info.java | 21 +
.../nonlinear/scalar/noderiv/AbstractSimplex.java | 345 ++
.../nonlinear/scalar/noderiv/BOBYQAOptimizer.java | 2475 ++++++++
.../nonlinear/scalar/noderiv/CMAESOptimizer.java | 1358 +++++
.../scalar/noderiv/MultiDirectionalSimplex.java | 215 +
.../scalar/noderiv/NelderMeadSimplex.java | 280 +
.../nonlinear/scalar/noderiv/PowellOptimizer.java | 299 +
.../nonlinear/scalar/noderiv/SimplexOptimizer.java | 231 +
.../scalar/noderiv/SimplexOptimizer.java.DEBUG | 339 ++
.../nonlinear/scalar/noderiv/package-info.java | 21 +
.../optim/nonlinear/scalar/package-info.java | 21 +
.../commons/math4/legacy/optim/package-info.java | 59 +
.../legacy/optim/univariate/BracketFinder.java | 314 +
.../legacy/optim/univariate/BrentOptimizer.java | 314 +
.../univariate/MultiStartUnivariateOptimizer.java | 230 +
.../legacy/optim/univariate/SearchInterval.java | 95 +
.../univariate/SimpleUnivariateValueChecker.java | 127 +
.../univariate/UnivariateObjectiveFunction.java | 46 +
.../optim/univariate/UnivariateOptimizer.java | 151 +
.../optim/univariate/UnivariatePointValuePair.java | 66 +
.../legacy/optim/univariate/package-info.java | 21 +
.../apache/commons/math4/legacy/package-info.java | 20 +
.../random/CorrelatedRandomVectorGenerator.java | 185 +
.../legacy/random/GaussianRandomGenerator.java | 51 +
.../legacy/random/HaltonSequenceGenerator.java | 183 +
.../legacy/random/NormalizedRandomGenerator.java | 37 +
.../math4/legacy/random/RandomGenerator.java | 148 +
.../commons/math4/legacy/random/RandomUtils.java | 403 ++
.../math4/legacy/random/RandomVectorGenerator.java | 32 +
.../commons/math4/legacy/random/RngAdaptor.java | 231 +
.../legacy/random/SobolSequenceGenerator.java | 326 ++
.../math4/legacy/random/StableRandomGenerator.java | 133 +
.../legacy/random/SynchronizedRandomGenerator.java | 134 +
.../random/UncorrelatedRandomVectorGenerator.java | 92 +
.../legacy/random/UniformRandomGenerator.java | 58 +
.../commons/math4/legacy/random/package-info.java | 33 +
.../commons/math4/legacy/special/BesselJ.java | 649 ++
.../commons/math4/legacy/special/package-info.java | 20 +
.../commons/math4/legacy/stat/Frequency.java | 389 ++
.../commons/math4/legacy/stat/StatUtils.java | 856 +++
.../math4/legacy/stat/correlation/Covariance.java | 290 +
.../stat/correlation/KendallsCorrelation.java | 273 +
.../stat/correlation/PearsonsCorrelation.java | 330 ++
.../stat/correlation/SpearmansCorrelation.java | 203 +
.../correlation/StorelessBivariateCovariance.java | 138 +
.../stat/correlation/StorelessCovariance.java | 229 +
.../legacy/stat/correlation/package-info.java | 22 +
.../AbstractStorelessUnivariateStatistic.java | 191 +
.../descriptive/AbstractUnivariateStatistic.java | 132 +
.../descriptive/AggregateSummaryStatistics.java | 429 ++
.../stat/descriptive/DescriptiveStatistics.java | 800 +++
.../math4/legacy/stat/descriptive/DoubleArray.java | 110 +
.../descriptive/MultivariateSummaryStatistics.java | 645 ++
.../stat/descriptive/ResizableDoubleArray.java | 851 +++
.../StatisticalMultivariateSummary.java | 119 +
.../stat/descriptive/StatisticalSummary.java | 64 +
.../stat/descriptive/StatisticalSummaryValues.java | 192 +
.../descriptive/StorelessUnivariateStatistic.java | 91 +
.../legacy/stat/descriptive/SummaryStatistics.java | 771 +++
.../SynchronizedDescriptiveStatistics.java | 191 +
.../SynchronizedMultivariateSummaryStatistics.java | 297 +
.../descriptive/SynchronizedSummaryStatistics.java | 365 ++
.../legacy/stat/descriptive/TransformerMap.java | 190 +
.../stat/descriptive/UnivariateStatistic.java | 136 +
.../stat/descriptive/WeightedEvaluation.java | 57 +
.../stat/descriptive/moment/FirstMoment.java | 165 +
.../stat/descriptive/moment/FourthMoment.java | 149 +
.../stat/descriptive/moment/GeometricMean.java | 208 +
.../legacy/stat/descriptive/moment/Kurtosis.java | 225 +
.../math4/legacy/stat/descriptive/moment/Mean.java | 287 +
.../stat/descriptive/moment/SecondMoment.java | 131 +
.../stat/descriptive/moment/SemiVariance.java | 362 ++
.../legacy/stat/descriptive/moment/Skewness.java | 226 +
.../stat/descriptive/moment/StandardDeviation.java | 276 +
.../stat/descriptive/moment/ThirdMoment.java | 147 +
.../legacy/stat/descriptive/moment/Variance.java | 626 ++
.../descriptive/moment/VectorialCovariance.java | 157 +
.../stat/descriptive/moment/VectorialMean.java | 105 +
.../stat/descriptive/moment/package-info.java | 20 +
.../legacy/stat/descriptive/package-info.java | 44 +
.../descriptive/rank/CentralPivotingStrategy.java | 44 +
.../legacy/stat/descriptive/rank/KthSelector.java | 155 +
.../math4/legacy/stat/descriptive/rank/Max.java | 169 +
.../math4/legacy/stat/descriptive/rank/Median.java | 95 +
.../rank/MedianOf3PivotingStrategy.java | 63 +
.../math4/legacy/stat/descriptive/rank/Min.java | 169 +
.../stat/descriptive/rank/PSquarePercentile.java | 990 ++++
.../legacy/stat/descriptive/rank/Percentile.java | 1379 +++++
.../stat/descriptive/rank/PivotingStrategy.java | 39 +
.../descriptive/rank/RandomPivotingStrategy.java | 101 +
.../legacy/stat/descriptive/rank/package-info.java | 20 +
.../legacy/stat/descriptive/summary/Product.java | 230 +
.../math4/legacy/stat/descriptive/summary/Sum.java | 224 +
.../legacy/stat/descriptive/summary/SumOfLogs.java | 170 +
.../stat/descriptive/summary/SumOfSquares.java | 159 +
.../stat/descriptive/summary/package-info.java | 20 +
.../stat/inference/AlternativeHypothesis.java | 40 +
.../math4/legacy/stat/inference/BinomialTest.java | 163 +
.../math4/legacy/stat/inference/ChiSquareTest.java | 602 ++
.../commons/math4/legacy/stat/inference/GTest.java | 538 ++
.../legacy/stat/inference/InferenceTestUtils.java | 745 +++
.../stat/inference/KolmogorovSmirnovTest.java | 1229 ++++
.../legacy/stat/inference/MannWhitneyUTest.java | 230 +
.../math4/legacy/stat/inference/OneWayAnova.java | 354 ++
.../commons/math4/legacy/stat/inference/TTest.java | 1183 ++++
.../stat/inference/WilcoxonSignedRankTest.java | 323 +
.../math4/legacy/stat/inference/package-info.java | 22 +
.../legacy/stat/interval/AgrestiCoullInterval.java | 49 +
.../stat/interval/BinomialConfidenceInterval.java | 61 +
.../stat/interval/ClopperPearsonInterval.java | 60 +
.../legacy/stat/interval/ConfidenceInterval.java | 108 +
.../math4/legacy/stat/interval/IntervalUtils.java | 173 +
.../stat/interval/NormalApproximationInterval.java | 45 +
.../legacy/stat/interval/WilsonScoreInterval.java | 51 +
.../math4/legacy/stat/interval/package-info.java | 22 +
.../commons/math4/legacy/stat/package-info.java | 20 +
.../math4/legacy/stat/ranking/NaNStrategy.java | 55 +
.../math4/legacy/stat/ranking/NaturalRanking.java | 478 ++
.../legacy/stat/ranking/RankingAlgorithm.java | 40 +
.../math4/legacy/stat/ranking/TiesStrategy.java | 54 +
.../math4/legacy/stat/ranking/package-info.java | 22 +
.../AbstractMultipleLinearRegression.java | 386 ++
.../regression/GLSMultipleLinearRegression.java | 135 +
.../stat/regression/MillerUpdatingRegression.java | 1108 ++++
.../regression/ModelSpecificationException.java | 39 +
.../stat/regression/MultipleLinearRegression.java | 69 +
.../regression/OLSMultipleLinearRegression.java | 285 +
.../legacy/stat/regression/RegressionResults.java | 421 ++
.../legacy/stat/regression/SimpleRegression.java | 889 +++
.../UpdatingMultipleLinearRegression.java | 93 +
.../math4/legacy/stat/regression/package-info.java | 22 +
.../math4/legacy/util/CombinatoricsUtils.java | 125 +
.../commons/math4/legacy/util/CompositeFormat.java | 218 +
.../apache/commons/math4/legacy/util/FastMath.java | 4351 ++++++++++++++
.../commons/math4/legacy/util/FastMathCalc.java | 658 +++
.../math4/legacy/util/FastMathLiteralArrays.java | 6175 ++++++++++++++++++++
.../commons/math4/legacy/util/IntegerSequence.java | 376 ++
.../commons/math4/legacy/util/MathArrays.java | 1284 ++++
.../org/apache/commons/math4/legacy/util/Pair.java | 156 +
.../commons/math4/legacy/util/package-info.java | 20 +
.../exception/util/LocalizedFormats_en.properties | 0
.../exception/util/LocalizedFormats_fr.properties | 343 ++
.../math4/legacy}/random/new-joe-kuo-6.21201 | 0
.../src}/test/R/ChiSquareDistributionTestCases.R | 0
.../src}/test/R/FDistributionTestCases.R | 0
.../src}/test/R/GammaDistributionTestCases.R | 0
.../R/KolmogorovSmirnovDistributionTestCases.R | 0
.../src}/test/R/KolmogorovSmirnovTestCases.R | 0
.../src}/test/R/LevyDistributionTestCases.R | 0
{src => commons-math-legacy/src}/test/R/README.txt | 0
.../src}/test/R/TDistributionTestCases.R | 0
{src => commons-math-legacy/src}/test/R/TTestCases | 0
.../src}/test/R/WeibullDistributionTestCases.R | 0
.../src}/test/R/anovaTestCases | 0
.../src}/test/R/binomialTestCases | 0
.../src}/test/R/cauchyTestCases.R | 0
.../src}/test/R/chiSquareTestCases | 0
.../src}/test/R/correlationTestCases | 0
.../src}/test/R/covarianceTestCases | 0
.../src}/test/R/descriptiveTestCases | 0
.../src}/test/R/exponentialTestCases | 0
.../src}/test/R/geometricTestCases | 0
.../src}/test/R/gumbelTestCases.R | 0
.../src}/test/R/hypergeometricTestCases | 0
.../src}/test/R/laplaceTestCases.R | 0
.../src}/test/R/logNormalTestCases | 0
.../src}/test/R/logisticsTestCases.R | 0
.../src}/test/R/multipleOLSRegressionTestCases | 0
.../src}/test/R/nakagamiTestCases.R | 0
.../src}/test/R/normalTestCases | 0
.../src}/test/R/paretoTestCases | 0
.../src}/test/R/pascalTestCases | 0
.../src}/test/R/poissonTestCases | 0
.../src}/test/R/regressionTestCases | 0
{src => commons-math-legacy/src}/test/R/testAll | 0
.../src}/test/R/testFunctions | 0
.../src}/test/R/zipfTestCases | 0
.../legacy/ExtendedFieldElementAbstractTest.java | 540 ++
.../apache/commons/math4/legacy/PerfTestUtils.java | 384 ++
.../org/apache/commons/math4/legacy/Retry.java | 29 +
.../apache/commons/math4/legacy/RetryRunner.java | 81 +
.../commons/math4/legacy/RetryRunnerTest.java | 54 +
.../org/apache/commons/math4/legacy/TestUtils.java | 586 ++
.../math4/legacy/analysis/FunctionUtilsTest.java | 404 ++
.../math4/legacy/analysis/MonitoredFunction.java | 48 +
.../math4/legacy/analysis/QuinticFunction.java | 41 +
.../math4/legacy/analysis/SumSincFunction.java | 55 +
.../math4/legacy/analysis/XMinus5Function.java | 41 +
.../analysis/differentiation/DSCompilerTest.java | 477 ++
.../differentiation/DerivativeStructureTest.java | 1632 ++++++
.../FiniteDifferencesDifferentiatorTest.java | 413 ++
.../differentiation/GradientFunctionTest.java | 90 +
.../differentiation/JacobianFunctionTest.java | 97 +
.../differentiation/SparseGradientTest.java | 1131 ++++
.../analysis/function/BivariateFunctionTest.java | 44 +
.../legacy/analysis/function/GaussianTest.java | 161 +
.../analysis/function/HarmonicOscillatorTest.java | 139 +
.../legacy/analysis/function/LogisticTest.java | 199 +
.../math4/legacy/analysis/function/LogitTest.java | 225 +
.../legacy/analysis/function/SigmoidTest.java | 110 +
.../math4/legacy/analysis/function/SincTest.java | 122 +
.../math4/legacy/analysis/function/SqrtTest.java | 72 +
.../legacy/analysis/function/StepFunctionTest.java | 115 +
.../UnivariateDifferentiableFunctionTest.java | 227 +
.../analysis/function/UnivariateFunctionTest.java | 124 +
.../IterativeLegendreGaussIntegratorTest.java | 171 +
.../integration/MidPointIntegratorTest.java | 175 +
.../integration/RombergIntegratorTest.java | 123 +
.../integration/SimpsonIntegratorTest.java | 385 ++
.../integration/TrapezoidIntegratorTest.java | 123 +
.../integration/gauss/BaseRuleFactoryTest.java | 113 +
.../integration/gauss/GaussIntegratorTest.java | 74 +
.../gauss/GaussianQuadratureAbstractTest.java | 116 +
.../integration/gauss/HermiteParametricTest.java | 96 +
.../analysis/integration/gauss/HermiteTest.java | 112 +
.../analysis/integration/gauss/LaguerreTest.java | 50 +
.../gauss/LegendreHighPrecisionParametricTest.java | 85 +
.../gauss/LegendreHighPrecisionTest.java | 58 +
.../integration/gauss/LegendreParametricTest.java | 85 +
.../analysis/integration/gauss/LegendreTest.java | 58 +
.../interpolation/AkimaSplineInterpolatorTest.java | 267 +
.../BicubicInterpolatingFunctionTest.java | 391 ++
.../interpolation/BicubicInterpolatorTest.java | 178 +
.../DividedDifferenceInterpolatorTest.java | 146 +
.../FieldHermiteInterpolatorTest.java | 276 +
.../interpolation/HermiteInterpolatorTest.java | 257 +
.../interpolation/LinearInterpolatorTest.java | 147 +
.../interpolation/LoessInterpolatorTest.java | 259 +
.../MicrosphereProjectionInterpolatorTest.java | 149 +
.../interpolation/NevilleInterpolatorTest.java | 146 +
...wiseBicubicSplineInterpolatingFunctionTest.java | 271 +
.../PiecewiseBicubicSplineInterpolatorTest.java | 229 +
.../interpolation/SplineInterpolatorTest.java | 223 +
.../TricubicInterpolatingFunctionTest.java | 653 +++
.../interpolation/TricubicInterpolatorTest.java | 227 +
.../UnivariatePeriodicInterpolatorTest.java | 165 +
.../PolynomialFunctionLagrangeFormTest.java | 153 +
.../PolynomialFunctionNewtonFormTest.java | 178 +
.../polynomials/PolynomialFunctionTest.java | 263 +
.../polynomials/PolynomialSplineFunctionTest.java | 187 +
.../analysis/polynomials/PolynomialsUtilsTest.java | 394 ++
.../solvers/BaseSecantSolverAbstractTest.java | 259 +
.../analysis/solvers/BisectionSolverTest.java | 90 +
.../solvers/BracketingNthOrderBrentSolverTest.java | 214 +
.../legacy/analysis/solvers/BrentSolverTest.java | 268 +
.../FieldBracketingNthOrderBrentSolverTest.java | 180 +
.../analysis/solvers/IllinoisSolverTest.java | 36 +
.../analysis/solvers/LaguerreSolverTest.java | 159 +
.../legacy/analysis/solvers/MullerSolver2Test.java | 145 +
.../legacy/analysis/solvers/MullerSolverTest.java | 148 +
.../analysis/solvers/NewtonRaphsonSolverTest.java | 90 +
.../legacy/analysis/solvers/PegasusSolverTest.java | 36 +
.../analysis/solvers/RegulaFalsiSolverTest.java | 60 +
.../legacy/analysis/solvers/RiddersSolverTest.java | 141 +
.../legacy/analysis/solvers/SecantSolverTest.java | 39 +
.../solvers/UnivariateSolverUtilsTest.java | 217 +
.../legacy/complex/ComplexFormatAbstractTest.java | 416 ++
.../math4/legacy/complex/ComplexFormatTest.java | 33 +
.../legacy/complex/FrenchComplexFormatTest.java | 34 +
.../apache/commons/math4/legacy/dfp/Decimal10.java | 99 +
.../commons/math4/legacy/dfp/DfpDecTest.java | 566 ++
.../commons/math4/legacy/dfp/DfpMathTest.java | 588 ++
.../apache/commons/math4/legacy/dfp/DfpTest.java | 1674 ++++++
.../AbstractIntegerDistributionTest.java | 130 +
.../distribution/AbstractRealDistributionTest.java | 211 +
.../distribution/EmpiricalDistributionTest.java | 689 +++
.../EnumeratedIntegerDistributionTest.java | 183 +
.../EnumeratedRealDistributionTest.java | 254 +
.../IntegerDistributionAbstractTest.java | 426 ++
.../MixtureMultivariateNormalDistributionTest.java | 265 +
.../MultivariateNormalDistributionTest.java | 156 +
.../distribution/RealDistributionAbstractTest.java | 515 ++
...teNormalMixtureExpectationMaximizationTest.java | 349 ++
.../exception/DimensionMismatchExceptionTest.java | 33 +
.../exception/MaxCountExceededExceptionTest.java | 32 +
.../NonMonotonicSequenceExceptionTest.java | 45 +
.../exception/NotFiniteNumberExceptionTest.java | 68 +
.../legacy/exception/NotPositiveExceptionTest.java | 34 +
.../NotStrictlyPositiveExceptionTest.java | 34 +
.../exception/NullArgumentExceptionTest.java | 44 +
.../exception/NumberIsTooLargeExceptionTest.java | 34 +
.../exception/NumberIsTooSmallExceptionTest.java | 34 +
.../legacy/exception/OutOfRangeExceptionTest.java | 34 +
.../exception/TooManyEvaluationsExceptionTest.java | 39 +
.../math4/legacy/exception/util/ArgUtilsTest.java | 75 +
.../exception/util/ExceptionContextTest.java | 130 +
.../exception/util/LocalizedFormatsTest.java | 104 +
.../field/linalg/FP64FieldDenseMatrixTest.java | 285 +
.../field/linalg/FieldLUDecompositionTest.java | 314 +
.../math4/legacy/filter/KalmanFilterTest.java | 442 ++
.../legacy/fitting/GaussianCurveFitterTest.java | 424 ++
.../legacy/fitting/HarmonicCurveFitterTest.java | 182 +
.../legacy/fitting/PolynomialCurveFitterTest.java | 167 +
.../legacy/fitting/SimpleCurveFitterTest.java | 59 +
.../legacy/fitting/WeightedObservedPointsTest.java | 126 +
.../AbstractLeastSquaresOptimizerAbstractTest.java | 607 ++
.../fitting/leastsquares/BevingtonProblem.java | 79 +
.../legacy/fitting/leastsquares/CircleProblem.java | 178 +
.../fitting/leastsquares/CircleVectorial.java | 97 +
...atorVectorMultivariateJacobianFunctionTest.java | 154 +
.../leastsquares/EvaluationRmsCheckerTest.java | 103 +
.../fitting/leastsquares/EvaluationTest.java | 335 ++
.../leastsquares/EvaluationTestValidation.java | 304 +
.../GaussNewtonOptimizerWithCholeskyTest.java | 133 +
.../GaussNewtonOptimizerWithLUTest.java | 133 +
.../GaussNewtonOptimizerWithQRTest.java | 119 +
.../GaussNewtonOptimizerWithSVDTest.java | 151 +
.../LevenbergMarquardtOptimizerTest.java | 346 ++
.../legacy/fitting/leastsquares/MinpackTest.java | 1484 +++++
.../leastsquares/RandomCirclePointGenerator.java | 87 +
.../RandomStraightLinePointGenerator.java | 97 +
.../leastsquares/StatisticalReferenceDataset.java | 373 ++
.../StatisticalReferenceDatasetFactory.java | 202 +
.../fitting/leastsquares/StraightLineProblem.java | 169 +
.../legacy/genetics/BinaryChromosomeTest.java | 66 +
.../math4/legacy/genetics/BinaryMutationTest.java | 45 +
.../math4/legacy/genetics/ChromosomeTest.java | 120 +
.../math4/legacy/genetics/CycleCrossoverTest.java | 151 +
.../legacy/genetics/DummyBinaryChromosome.java | 45 +
.../math4/legacy/genetics/DummyListChromosome.java | 79 +
.../math4/legacy/genetics/DummyRandomKey.java | 45 +
.../genetics/ElitisticListPopulationTest.java | 106 +
.../math4/legacy/genetics/FitnessCachingTest.java | 95 +
.../legacy/genetics/FixedElapsedTimeTest.java | 80 +
.../legacy/genetics/FixedGenerationCountTest.java | 70 +
.../genetics/GeneticAlgorithmTestBinary.java | 125 +
.../genetics/GeneticAlgorithmTestPermutations.java | 133 +
.../math4/legacy/genetics/ListPopulationTest.java | 220 +
.../math4/legacy/genetics/NPointCrossoverTest.java | 131 +
.../legacy/genetics/OnePointCrossoverTest.java | 61 +
.../legacy/genetics/OrderedCrossoverTest.java | 104 +
.../legacy/genetics/RandomKeyMutationTest.java | 44 +
.../math4/legacy/genetics/RandomKeyTest.java | 173 +
.../legacy/genetics/TournamentSelectionTest.java | 57 +
.../legacy/genetics/UniformCrossoverTest.java | 153 +
.../legacy/linear/Array2DRowRealMatrixTest.java | 1171 ++++
.../math4/legacy/linear/ArrayFieldVectorTest.java | 1263 ++++
.../math4/legacy/linear/ArrayRealVectorTest.java | 172 +
.../legacy/linear/BiDiagonalTransformerTest.java | 201 +
.../math4/legacy/linear/BigRealFieldTest.java | 45 +
.../commons/math4/legacy/linear/BigRealTest.java | 191 +
.../math4/legacy/linear/BlockFieldMatrixTest.java | 1389 +++++
.../math4/legacy/linear/BlockRealMatrixTest.java | 1280 ++++
.../legacy/linear/CholeskyDecompositionTest.java | 138 +
.../math4/legacy/linear/CholeskySolverTest.java | 112 +
.../math4/legacy/linear/ConjugateGradientTest.java | 620 ++
.../apache/commons/math4/legacy/linear/Dfp25.java | 41 +
.../math4/legacy/linear/DiagonalMatrixTest.java | 368 ++
.../legacy/linear/EigenComplexSolverTest.java_NEW | 322 +
.../legacy/linear/EigenDecompositionTest.java | 785 +++
.../math4/legacy/linear/EigenSolverTest.java | 199 +
.../legacy/linear/FieldLUDecompositionTest.java | 301 +
.../math4/legacy/linear/FieldLUSolverTest.java | 176 +
.../math4/legacy/linear/FieldMatrixImplTest.java | 1156 ++++
.../legacy/linear/FrenchRealVectorFormatTest.java | 34 +
.../legacy/linear/HessenbergTransformerTest.java | 225 +
.../commons/math4/legacy/linear/HilbertMatrix.java | 75 +
.../math4/legacy/linear/InverseHilbertMatrix.java | 100 +
.../math4/legacy/linear/LUDecompositionTest.java | 291 +
.../commons/math4/legacy/linear/LUSolverTest.java | 168 +
.../MatrixDimensionMismatchExceptionTest.java | 36 +
.../math4/legacy/linear/MatrixUtilsTest.java | 488 ++
.../legacy/linear/OpenIntToDoubleHashMapTest.java | 333 ++
.../math4/legacy/linear/OpenIntToFieldTest.java | 336 ++
.../math4/legacy/linear/OpenMapRealMatrixTest.java | 49 +
.../math4/legacy/linear/QRDecompositionTest.java | 285 +
.../commons/math4/legacy/linear/QRSolverTest.java | 195 +
.../math4/legacy/linear/RRQRDecompositionTest.java | 257 +
.../math4/legacy/linear/RRQRSolverTest.java | 201 +
.../linear/RealMatrixFormatAbstractTest.java | 362 ++
.../math4/legacy/linear/RealMatrixFormatTest.java | 34 +
.../legacy/linear/RealVectorAbstractTest.java | 2008 +++++++
.../linear/RealVectorFormatAbstractTest.java | 354 ++
.../math4/legacy/linear/RealVectorFormatTest.java | 34 +
.../math4/legacy/linear/RealVectorTest.java | 233 +
.../RectangularCholeskyDecompositionTest.java | 114 +
.../math4/legacy/linear/SchurTransformerTest.java | 206 +
.../linear/SingularValueDecompositionTest.java | 331 ++
.../legacy/linear/SingularValueSolverTest.java | 158 +
.../math4/legacy/linear/SparseFieldMatrixTest.java | 700 +++
.../math4/legacy/linear/SparseFieldVectorTest.java | 816 +++
.../math4/legacy/linear/SparseRealMatrixTest.java | 697 +++
.../math4/legacy/linear/SparseRealVectorTest.java | 150 +
.../commons/math4/legacy/linear/SymmLQTest.java | 698 +++
.../legacy/linear/TriDiagonalTransformerTest.java | 177 +
.../linear/UnmodifiableArrayRealVectorTest.java | 39 +
.../linear/UnmodifiableOpenMapRealVectorTest.java | 45 +
.../linear/UnmodifiableRealVectorAbstractTest.java | 455 ++
.../legacy/ml/clustering/DBSCANClustererTest.java | 190 +
.../ml/clustering/FuzzyKMeansClustererTest.java | 135 +
.../ml/clustering/KMeansPlusPlusClustererTest.java | 188 +
.../clustering/MiniBatchKMeansClustererTest.java | 182 +
.../MultiKMeansPlusPlusClustererTest.java | 98 +
.../evaluation/CalinskiHarabaszTest.java | 167 +
.../evaluation/SumOfClusterVariancesTest.java | 81 +
.../legacy/ml/distance/CanberraDistanceTest.java | 48 +
.../legacy/ml/distance/ChebyshevDistanceTest.java | 42 +
.../ml/distance/EarthMoversDistanceTest.java | 48 +
.../legacy/ml/distance/EuclideanDistanceTest.java | 43 +
.../legacy/ml/distance/ManhattanDistanceTest.java | 42 +
.../legacy/ode/ContinuousOutputFieldModelTest.java | 228 +
.../legacy/ode/ContinuousOutputModelTest.java | 206 +
.../math4/legacy/ode/FieldExpandableODETest.java | 345 ++
.../math4/legacy/ode/FirstOrderConverterTest.java | 114 +
.../math4/legacy/ode/JacobianMatricesTest.java | 619 ++
.../math4/legacy/ode/TestFieldProblem1.java | 79 +
.../math4/legacy/ode/TestFieldProblem2.java | 78 +
.../math4/legacy/ode/TestFieldProblem3.java | 124 +
.../math4/legacy/ode/TestFieldProblem4.java | 168 +
.../math4/legacy/ode/TestFieldProblem5.java | 41 +
.../math4/legacy/ode/TestFieldProblem6.java | 84 +
.../math4/legacy/ode/TestFieldProblemAbstract.java | 204 +
.../math4/legacy/ode/TestFieldProblemHandler.java | 155 +
.../commons/math4/legacy/ode/TestProblem1.java | 74 +
.../commons/math4/legacy/ode/TestProblem2.java | 76 +
.../commons/math4/legacy/ode/TestProblem3.java | 113 +
.../commons/math4/legacy/ode/TestProblem4.java | 151 +
.../commons/math4/legacy/ode/TestProblem5.java | 34 +
.../commons/math4/legacy/ode/TestProblem6.java | 75 +
.../math4/legacy/ode/TestProblemAbstract.java | 162 +
.../math4/legacy/ode/TestProblemHandler.java | 161 +
.../math4/legacy/ode/events/CloseEventsTest.java | 133 +
.../math4/legacy/ode/events/EventFilterTest.java | 275 +
.../math4/legacy/ode/events/EventStateTest.java | 297 +
.../legacy/ode/events/OverlappingEventsTest.java | 174 +
.../legacy/ode/events/ReappearingEventTest.java | 101 +
...tractEmbeddedRungeKuttaFieldIntegratorTest.java | 616 ++
.../AbstractRungeKuttaFieldIntegratorTest.java | 682 +++
.../AdamsBashforthFieldIntegratorTest.java | 85 +
.../ode/nonstiff/AdamsBashforthIntegratorTest.java | 302 +
.../nonstiff/AdamsFieldIntegratorAbstractTest.java | 265 +
.../nonstiff/AdamsMoultonFieldIntegratorTest.java | 85 +
.../ode/nonstiff/AdamsMoultonIntegratorTest.java | 289 +
.../nonstiff/AdamsNordsieckTransformerTest.java | 120 +
...lassicalRungKuttaFieldStepInterpolatorTest.java | 67 +
.../ClassicalRungeKuttaFieldIntegratorTest.java | 103 +
.../ClassicalRungeKuttaIntegratorTest.java | 354 ++
.../ClassicalRungeKuttaStepInterpolatorTest.java | 98 +
.../math4/legacy/ode/nonstiff/Decimal64Test.java | 427 ++
.../DormandPrince54FieldIntegratorTest.java | 98 +
.../DormandPrince54FieldStepInterpolatorTest.java | 67 +
.../nonstiff/DormandPrince54IntegratorTest.java | 360 ++
.../DormandPrince54StepInterpolatorTest.java | 155 +
.../DormandPrince853FieldIntegratorTest.java | 98 +
.../DormandPrince853FieldStepInterpolatorTest.java | 67 +
.../nonstiff/DormandPrince853IntegratorTest.java | 499 ++
.../DormandPrince853StepInterpolatorTest.java | 155 +
...eddedRungeKuttaFieldIntegratorAbstractTest.java | 616 ++
.../ode/nonstiff/EulerFieldIntegratorTest.java | 104 +
.../nonstiff/EulerFieldStepInterpolatorTest.java | 66 +
.../legacy/ode/nonstiff/EulerIntegratorTest.java | 197 +
.../ode/nonstiff/EulerStepInterpolatorTest.java | 194 +
.../ode/nonstiff/GillFieldIntegratorTest.java | 103 +
.../nonstiff/GillFieldStepInterpolatorTest.java | 67 +
.../legacy/ode/nonstiff/GillIntegratorTest.java | 253 +
.../ode/nonstiff/GillStepInterpolatorTest.java | 98 +
.../nonstiff/GraggBulirschStoerIntegratorTest.java | 436 ++
.../GraggBulirschStoerStepInterpolatorTest.java | 157 +
.../nonstiff/HighamHall54FieldIntegratorTest.java | 98 +
.../HighamHall54FieldStepInterpolatorTest.java | 67 +
.../ode/nonstiff/HighamHall54IntegratorTest.java | 377 ++
.../nonstiff/HighamHall54StepInterpolatorTest.java | 155 +
.../ode/nonstiff/LutherFieldIntegratorTest.java | 122 +
.../nonstiff/LutherFieldStepInterpolatorTest.java | 67 +
.../legacy/ode/nonstiff/LutherIntegratorTest.java | 344 ++
.../ode/nonstiff/LutherStepInterpolatorTest.java | 98 +
.../ode/nonstiff/MidpointFieldIntegratorTest.java | 103 +
.../MidpointFieldStepInterpolatorTest.java | 67 +
.../ode/nonstiff/MidpointIntegratorTest.java | 197 +
.../ode/nonstiff/MidpointStepInterpolatorTest.java | 99 +
.../RungeKuttaFieldIntegratorAbstractTest.java | 682 +++
...ungeKuttaFieldStepInterpolatorAbstractTest.java | 308 +
.../legacy/ode/nonstiff/StepFieldProblem.java | 85 +
.../math4/legacy/ode/nonstiff/StepProblem.java | 71 +
.../nonstiff/ThreeEighthesFieldIntegratorTest.java | 103 +
.../ThreeEighthesFieldStepInterpolatorTest.java | 67 +
.../ode/nonstiff/ThreeEighthesIntegratorTest.java | 247 +
.../ThreeEighthesStepInterpolatorTest.java | 98 +
.../ode/sampling/DummyFieldStepInterpolator.java | 55 +
.../legacy/ode/sampling/DummyStepInterpolator.java | 153 +
.../ode/sampling/DummyStepInterpolatorTest.java | 136 +
.../sampling/NordsieckStepInterpolatorTest.java | 96 +
.../ode/sampling/StepInterpolatorTestUtils.java | 146 +
.../sampling/StepNormalizerOutputOverlapTest.java | 69 +
.../ode/sampling/StepNormalizerOutputTest.java | 69 +
.../ode/sampling/StepNormalizerOutputTestBase.java | 286 +
.../legacy/ode/sampling/StepNormalizerTest.java | 130 +
.../math4/legacy/optim/PointValuePairTest.java | 35 +
.../legacy/optim/PointVectorValuePairTest.java | 39 +
.../math4/legacy/optim/SimplePointCheckerTest.java | 53 +
.../math4/legacy/optim/SimpleValueCheckerTest.java | 52 +
.../legacy/optim/SimpleVectorValueCheckerTest.java | 53 +
.../legacy/optim/linear/SimplexSolverTest.java | 905 +++
.../legacy/optim/linear/SimplexTableauTest.java | 109 +
.../MultiStartMultivariateOptimizerTest.java | 159 +
.../MultivariateFunctionMappingAdapterTest.java | 193 +
.../MultivariateFunctionPenaltyAdapterTest.java | 203 +
.../nonlinear/scalar/gradient/CircleScalar.java | 87 +
.../NonLinearConjugateGradientOptimizerTest.java | 480 ++
.../scalar/noderiv/BOBYQAOptimizerTest.java | 355 ++
.../scalar/noderiv/CMAESOptimizerTest.java | 852 +++
.../nonlinear/scalar/noderiv/OptimTestUtils.java | 397 ++
.../scalar/noderiv/PowellOptimizerTest.java | 272 +
.../SimplexOptimizerMultiDirectionalTest.java | 337 ++
.../SimplexOptimizerMultiDirectionalTest.java.NEW | 409 ++
.../noderiv/SimplexOptimizerNelderMeadTest.java | 423 ++
.../legacy/optim/univariate/BracketFinderTest.java | 121 +
.../optim/univariate/BrentOptimizerTest.java | 303 +
.../MultiStartUnivariateOptimizerTest.java | 127 +
.../SimpleUnivariateValueCheckerTest.java | 52 +
.../CorrelatedRandomVectorGeneratorTest.java | 192 +
.../legacy/random/GaussianRandomGeneratorTest.java | 40 +
.../legacy/random/HaltonSequenceGeneratorTest.java | 134 +
.../RandomUtilsDataGeneratorAbstractTest.java | 303 +
.../RandomUtilsDataGeneratorJDKRandomTest.java | 31 +
.../legacy/random/SobolSequenceGeneratorTest.java | 107 +
.../legacy/random/StableRandomGeneratorTest.java | 130 +
.../random/SynchronizedRandomGeneratorTest.java | 120 +
.../UncorrelatedRandomVectorGeneratorTest.java | 65 +
.../legacy/random/UniformRandomGeneratorTest.java | 40 +
.../commons/math4/legacy/special/BesselJTest.java | 775 +++
.../math4/legacy/stat/CertifiedDataTest.java | 149 +
.../commons/math4/legacy/stat/FrequencyTest.java | 354 ++
.../commons/math4/legacy/stat/StatUtilsTest.java | 556 ++
.../math4/legacy/stat/StatUtilsTest.java.orig | 0
.../legacy/stat/correlation/CovarianceTest.java | 253 +
.../stat/correlation/KendallsCorrelationTest.java | 280 +
.../stat/correlation/PearsonsCorrelationTest.java | 318 +
.../correlation/SpearmansRankCorrelationTest.java | 163 +
.../stat/correlation/StorelessCovarianceTest.java | 264 +
.../stat/data/CertifiedDataAbstractTest.java | 158 +
.../commons/math4/legacy/stat/data/LewTest.java | 28 +
.../math4/legacy/stat/data/LotteryTest.java | 28 +
.../AggregateSummaryStatisticsTest.java | 341 ++
.../stat/descriptive/DefaultTransformerTest.java | 105 +
.../descriptive/DescriptiveStatisticsTest.java | 485 ++
.../stat/descriptive/DoubleArrayAbstractTest.java | 133 +
.../stat/descriptive/ListUnivariateImpl.java | 195 +
.../stat/descriptive/ListUnivariateImplTest.java | 157 +
.../descriptive/MixedListUnivariateImplTest.java | 202 +
.../MultivariateSummaryStatisticsTest.java | 321 +
.../stat/descriptive/ResizableDoubleArrayTest.java | 582 ++
.../descriptive/StatisticalSummaryValuesTest.java | 82 +
.../StorelessUnivariateStatisticAbstractTest.java | 239 +
.../stat/descriptive/SummaryStatisticsTest.java | 372 ++
.../SynchronizedDescriptiveStatisticsTest.java | 27 +
...chronizedMultivariateSummaryStatisticsTest.java | 27 +
.../SynchronizedSummaryStatisticsTest.java | 26 +
.../stat/descriptive/TransformerMapTest.java | 122 +
.../UnivariateStatisticAbstractTest.java | 223 +
.../stat/descriptive/moment/FirstMomentTest.java | 111 +
.../stat/descriptive/moment/FourthMomentTest.java | 46 +
.../stat/descriptive/moment/GeometricMeanTest.java | 78 +
.../stat/descriptive/moment/InteractionTest.java | 79 +
.../stat/descriptive/moment/KurtosisTest.java | 64 +
.../legacy/stat/descriptive/moment/MeanTest.java | 67 +
.../stat/descriptive/moment/SecondMomentTest.java | 46 +
.../stat/descriptive/moment/SemiVarianceTest.java | 153 +
.../stat/descriptive/moment/SkewnessTest.java | 63 +
.../descriptive/moment/StandardDeviationTest.java | 95 +
.../stat/descriptive/moment/ThirdMomentTest.java | 46 +
.../stat/descriptive/moment/VarianceTest.java | 117 +
.../moment/VectorialCovarianceTest.java | 91 +
.../stat/descriptive/moment/VectorialMeanTest.java | 86 +
.../stat/descriptive/rank/KthSelectorTest.java | 57 +
.../legacy/stat/descriptive/rank/MaxTest.java | 73 +
.../legacy/stat/descriptive/rank/MedianTest.java | 115 +
.../legacy/stat/descriptive/rank/MinTest.java | 73 +
.../descriptive/rank/PSquarePercentileTest.java | 763 +++
.../stat/descriptive/rank/PercentileTest.java | 1041 ++++
.../stat/descriptive/summary/ProductTest.java | 91 +
.../stat/descriptive/summary/SumLogTest.java | 84 +
.../legacy/stat/descriptive/summary/SumSqTest.java | 69 +
.../legacy/stat/descriptive/summary/SumTest.java | 81 +
.../legacy/stat/inference/BinomialTestTest.java | 129 +
.../legacy/stat/inference/ChiSquareTestTest.java | 260 +
.../math4/legacy/stat/inference/GTestTest.java | 291 +
.../stat/inference/InferenceTestUtilsTest.java | 554 ++
.../stat/inference/KolmogorovSmirnovTestTest.java | 956 +++
.../stat/inference/MannWhitneyUTestTest.java | 127 +
.../legacy/stat/inference/OneWayAnovaTest.java | 154 +
.../math4/legacy/stat/inference/TTestTest.java | 297 +
.../stat/inference/WilcoxonSignedRankTestTest.java | 183 +
.../stat/interval/AgrestiCoullIntervalTest.java | 40 +
.../BinomialConfidenceIntervalAbstractTest.java | 80 +
.../stat/interval/ClopperPearsonIntervalTest.java | 110 +
.../legacy/stat/interval/IntervalUtilsTest.java | 64 +
.../interval/NormalApproximationIntervalTest.java | 40 +
.../stat/interval/WilsonScoreIntervalTest.java | 45 +
.../legacy/stat/ranking/NaturalRankingTest.java | 271 +
.../GLSMultipleLinearRegressionTest.java | 300 +
.../regression/MillerUpdatingRegressionTest.java | 1110 ++++
.../MultipleLinearRegressionAbstractTest.java | 136 +
.../OLSMultipleLinearRegressionTest.java | 822 +++
.../stat/regression/SimpleRegressionTest.java | 693 +++
.../math4/legacy/util/CombinatoricsUtilsTest.java | 95 +
.../legacy/util/FastMathStrictComparisonTest.java | 262 +
.../commons/math4/legacy/util/FastMathTest.java | 1965 +++++++
.../math4/legacy/util/IntegerSequenceTest.java | 327 ++
.../commons/math4/legacy/util/MathArraysTest.java | 848 +++
.../apache/commons/math4/legacy/util/PairTest.java | 118 +
.../apache/commons/math4/legacy/util/TestBean.java | 71 +
.../special/RealFunctionValidation/MANIFEST.txt | 0
.../special/RealFunctionValidation/README.txt | 0
.../RealFunctionValidation.java | 361 ++
.../RealFunctionValidation.sh | 0
.../src}/test/maxima/special/reference/gamma.mac | 0
.../test/maxima/special/reference/gamma.properties | 0
.../src}/test/maxima/special/reference/logBeta.mac | 0
.../maxima/special/reference/logBeta.properties | 0
.../test/maxima/special/reference/logGamma.mac | 0
.../maxima/special/reference/logGamma.properties | 0
.../distribution/gamma-distribution-shape-1.csv | 0
.../distribution/gamma-distribution-shape-10.csv | 0
.../distribution/gamma-distribution-shape-100.csv | 0
.../distribution/gamma-distribution-shape-1000.csv | 0
.../distribution/gamma-distribution-shape-142.csv | 0
.../distribution/gamma-distribution-shape-8.csv | 0
.../legacy}/distribution/gamma-distribution.mac | 0
.../math4/legacy}/distribution/testData.txt | 0
.../math4/legacy/fitting/leastsquares}/Hahn1.dat | 0
.../math4/legacy/fitting/leastsquares}/Kirby2.dat | 0
.../legacy/fitting/leastsquares}/Lanczos1.dat | 0
.../math4/legacy/fitting/leastsquares}/MGH17.dat | 0
.../commons/math4/legacy}/linear/matrix1.csv | 0
.../commons/math4/legacy}/linear/matrix2.csv | 0
.../optim/nonlinear/vector/jacobian/Hahn1.dat | 0
.../optim/nonlinear/vector/jacobian/Kirby2.dat | 0
.../optim/nonlinear/vector/jacobian/Lanczos1.dat | 0
.../optim/nonlinear/vector/jacobian/MGH17.dat | 0
.../math4/legacy/optimization/general}/Hahn1.dat | 0
.../math4/legacy/optimization/general}/Kirby2.dat | 0
.../legacy/optimization/general}/Lanczos1.dat | 0
.../math4/legacy/optimization/general}/MGH17.dat | 0
.../commons/math4/legacy}/random/emptyFile.txt | 0
.../apache/commons/math4/legacy}/stat/data/Lew.txt | 0
.../commons/math4/legacy}/stat/data/Lottery.txt | 0
.../commons/math4/legacy}/stat/data/Mavro.txt | 0
.../commons/math4/legacy}/stat/data/Michelso.txt | 0
.../commons/math4/legacy}/stat/data/NumAcc1.txt | 0
.../commons/math4/legacy}/stat/data/NumAcc2.txt | 0
.../commons/math4/legacy}/stat/data/NumAcc3.txt | 0
.../commons/math4/legacy}/stat/data/NumAcc4.txt | 0
.../commons/math4/legacy}/stat/data/PiDigits.txt | 0
LICENSE.txt => commons-math-neuralnet/LICENCE | 0
NOTICE.txt => commons-math-neuralnet/NOTICE | 0
commons-math-neuralnet/pom.xml | 64 +
.../commons/math4/neuralnet/DistanceMeasure.java | 27 +
.../commons/math4/neuralnet/EuclideanDistance.java | 45 +
.../math4/neuralnet/FeatureInitializer.java | 32 +
.../math4/neuralnet/FeatureInitializerFactory.java | 99 +
.../apache/commons/math4/neuralnet/MapRanking.java | 152 +
.../apache/commons/math4/neuralnet/MapUtils.java | 99 +
.../apache/commons/math4/neuralnet/Network.java | 489 ++
.../org/apache/commons/math4/neuralnet/Neuron.java | 273 +
.../math4/neuralnet/SquareNeighbourhood.java | 38 +
.../commons/math4/neuralnet/UpdateAction.java | 34 +
.../neuralnet/internal/NeuralNetException.java | 51 +
.../commons/math4/neuralnet/oned/NeuronString.java | 238 +
.../commons/math4/neuralnet/oned/package-info.java | 22 +
.../commons/math4/neuralnet/package-info.java | 22 +
.../math4/neuralnet/sofm/KohonenTrainingTask.java | 61 +
.../math4/neuralnet/sofm/KohonenUpdateAction.java | 254 +
.../neuralnet/sofm/LearningFactorFunction.java | 34 +
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.../neuralnet/sofm/NeighbourhoodSizeFunction.java | 37 +
.../sofm/NeighbourhoodSizeFunctionFactory.java | 99 +
.../commons/math4/neuralnet/sofm/package-info.java | 22 +
.../sofm/util/ExponentialDecayFunction.java | 83 +
.../sofm/util/QuasiSigmoidDecayFunction.java | 85 +
.../math4/neuralnet/sofm/util/package-info.java | 22 +
.../math4/neuralnet/twod/NeuronSquareMesh2D.java | 868 +++
.../commons/math4/neuralnet/twod/package-info.java | 22 +
.../math4/neuralnet/twod/util/LocationFinder.java | 104 +
.../neuralnet/twod/util/MapDataVisualization.java | 38 +
.../neuralnet/twod/util/MapVisualization.java | 34 +
.../neuralnet/twod/util/SmoothedDataHistogram.java | 99 +
.../neuralnet/twod/util/UnifiedDistanceMatrix.java | 155 +
.../math4/neuralnet/twod/util/package-info.java | 22 +
.../commons/math4/neuralnet/MapRankingTest.java | 124 +
.../commons/math4/neuralnet/NetworkTest.java | 214 +
.../apache/commons/math4/neuralnet/NeuronTest.java | 139 +
.../math4/neuralnet/OffsetFeatureInitializer.java | 48 +
.../math4/neuralnet/oned/NeuronStringTest.java | 189 +
.../neuralnet/sofm/KohonenUpdateActionTest.java | 99 +
.../sofm/LearningFactorFunctionFactoryTest.java | 91 +
.../sofm/NeighbourhoodSizeFunctionFactoryTest.java | 81 +
.../sofm/util/ExponentialDecayFunctionTest.java | 55 +
.../sofm/util/QuasiSigmoidDecayFunctionTest.java | 52 +
.../neuralnet/twod/NeuronSquareMesh2DTest.java | 917 +++
.../neuralnet/twod/util/LocationFinderTest.java | 73 +
LICENSE.txt => commons-math-transform/LICENCE | 0
NOTICE.txt => commons-math-transform/NOTICE | 0
commons-math-transform/pom.xml | 82 +
.../commons/math4/transform/ComplexTransform.java | 66 +
.../math4/transform/FastCosineTransform.java | 230 +
.../math4/transform/FastFourierTransform.java | 431 ++
.../math4/transform/FastHadamardTransform.java | 316 +
.../commons/math4/transform/FastSineTransform.java | 228 +
.../commons/math4/transform/RealTransform.java | 51 +
.../math4/transform/TransformException.java | 52 +
.../commons/math4/transform/TransformUtils.java | 157 +
.../commons/math4/transform/package-info.java | 21 +
.../math4/transform/FastCosineTransformerTest.java | 267 +
.../transform/FastFourierTransformerTest.java | 451 ++
.../transform/FastHadamardTransformerTest.java | 125 +
.../math4/transform/FastSineTransformerTest.java | 298 +
.../transform/RealTransformerAbstractTest.java | 328 ++
.../math4/transform/TransformUtilsTest.java | 59 +
dist-archive/pom.xml | 193 +
dist-archive/src/assembly/bin.xml | 42 +
dist-archive/src/assembly/src.xml | 35 +
findbugs-exclude-filter.xml | 331 --
math-RC.sh | 76 -
math-pre-RC.sh | 30 -
pmd-ruleset.xml | 73 -
pom.xml | 785 ++-
src/changes/changes.xml | 10 +
src/main/java/org/apache/commons/math4/Field.java | 58 -
.../org/apache/commons/math4/FieldElement.java | 87 -
.../org/apache/commons/math4/RealFieldElement.java | 402 --
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.../analysis/RealFieldUnivariateFunction.java | 86 -
.../commons/math4/analysis/TrivariateFunction.java | 35 -
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.../math4/analysis/UnivariateVectorFunction.java | 33 -
.../math4/analysis/differentiation/DSCompiler.java | 1834 ------
.../differentiation/DerivativeStructure.java | 1256 ----
.../FiniteDifferencesDifferentiator.java | 393 --
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.../analysis/differentiation/SparseGradient.java | 937 ---
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.../UnivariateFunctionDifferentiator.java | 33 -
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.../gauss/SymmetricGaussIntegrator.java | 99 -
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.../interpolation/AkimaSplineInterpolator.java | 248 -
.../BicubicInterpolatingFunction.java | 329 --
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.../interpolation/InterpolatingMicrosphere.java | 387 --
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.../interpolation/NevilleInterpolator.java | 61 -
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.../analysis/interpolation/SplineInterpolator.java | 137 -
.../TricubicInterpolatingFunction.java | 509 --
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.../analysis/polynomials/PolynomialsUtils.java | 454 --
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.../analysis/solvers/AbstractUnivariateSolver.java | 60 -
.../math4/analysis/solvers/AllowedSolution.java | 75 -
.../solvers/BaseAbstractUnivariateSolver.java | 315 -
.../math4/analysis/solvers/BaseSecantSolver.java | 280 -
.../analysis/solvers/BaseUnivariateSolver.java | 142 -
.../math4/analysis/solvers/BisectionSolver.java | 91 -
.../BracketedRealFieldUnivariateSolver.java | 142 -
.../solvers/BracketedUnivariateSolver.java | 92 -
.../solvers/BracketingNthOrderBrentSolver.java | 413 --
.../math4/analysis/solvers/BrentSolver.java | 109 -
.../FieldBracketingNthOrderBrentSolver.java | 453 --
.../math4/analysis/solvers/IllinoisSolver.java | 82 -
.../math4/analysis/solvers/LaguerreSolver.java | 384 --
.../math4/analysis/solvers/MullerSolver.java | 202 -
.../math4/analysis/solvers/MullerSolver2.java | 168 -
.../analysis/solvers/NewtonRaphsonSolver.java | 92 -
.../math4/analysis/solvers/PegasusSolver.java | 84 -
.../math4/analysis/solvers/PolynomialSolver.java | 28 -
.../math4/analysis/solvers/RegulaFalsiSolver.java | 94 -
.../math4/analysis/solvers/RiddersSolver.java | 142 -
.../math4/analysis/solvers/SecantSolver.java | 135 -
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.../java/org/apache/commons/math4/dfp/Dfp.java | 2928 ----------
.../java/org/apache/commons/math4/dfp/DfpDec.java | 368 --
.../org/apache/commons/math4/dfp/DfpField.java | 762 ---
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.../MultivariateNormalDistribution.java | 225 -
.../distribution/MultivariateRealDistribution.java | 77 -
...ariateNormalMixtureExpectationMaximization.java | 455 --
.../math4/distribution/fitting/package-info.java | 20 -
.../commons/math4/distribution/package-info.java | 21 -
.../math4/exception/ConvergenceException.java | 49 -
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.../math4/exception/MathArithmeticException.java | 52 -
.../exception/MathIllegalArgumentException.java | 41 -
.../exception/MathIllegalNumberException.java | 60 -
.../math4/exception/MathIllegalStateException.java | 63 -
.../commons/math4/exception/MathInternalError.java | 57 -
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.../MathUnsupportedOperationException.java | 49 -
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.../exception/NotStrictlyPositiveException.java | 49 -
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.../commons/math4/exception/ZeroException.java | 48 -
.../commons/math4/exception/package-info.java | 23 -
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.../math4/field/linalg/FieldLUDecomposition.java | 359 --
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.../commons/math4/filter/DefaultProcessModel.java | 170 -
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.../commons/math4/fitting/HarmonicCurveFitter.java | 445 --
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.../fitting/leastsquares/AbstractEvaluation.java | 101 -
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.../fitting/leastsquares/GaussNewtonOptimizer.java | 300 -
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.../leastsquares/LevenbergMarquardtOptimizer.java | 1043 ----
.../leastsquares/MultivariateJacobianFunction.java | 39 -
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.../org/apache/commons/math4/genetics/Fitness.java | 32 -
.../commons/math4/genetics/FixedElapsedTime.java | 79 -
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.../commons/math4/genetics/ListPopulation.java | 201 -
.../commons/math4/genetics/MutationPolicy.java | 35 -
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.../math4/genetics/PermutationChromosome.java | 40 -
.../apache/commons/math4/genetics/Population.java | 59 -
.../apache/commons/math4/genetics/RandomKey.java | 300 -
.../commons/math4/genetics/RandomKeyMutation.java | 55 -
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.../commons/math4/genetics/UniformCrossover.java | 135 -
.../commons/math4/genetics/package-info.java | 20 -
.../commons/math4/linear/AbstractFieldMatrix.java | 1114 ----
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.../PreconditionedIterativeLinearSolver.java | 214 -
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