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Posted to github@arrow.apache.org by "tdhock (via GitHub)" <gi...@apache.org> on 2023/05/02 05:55:14 UTC
[GitHub] [arrow] tdhock commented on issue #34689: [R] R Session Aborted, R encountered a fatal error after write_dataset command
tdhock commented on issue #34689:
URL: https://github.com/apache/arrow/issues/34689#issuecomment-1530920620
hi, I'm getting the same issue when I run the first few lines of `example("write_dataset",package="arrow")` shown below
```r
library(arrow)
sessionInfo()
one_level_tree <- tempfile()
write_dataset(mtcars, one_level_tree, partitioning = "cyl")
```
I am using Ubuntu 22.04 (jammy), with two versions of R/GCC, both of which segfault when running the R code above.
GCC 13.1 + R 4.3.0 both built from source below.
```
(base) tdhock@tdhock-MacBook:~$ bin/R --vanilla < R/arrow-crash.R
R version 4.3.0 (2023-04-21) -- "Already Tomorrow"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R est un logiciel libre livré sans AUCUNE GARANTIE.
Vous pouvez le redistribuer sous certaines conditions.
Tapez 'license()' ou 'licence()' pour plus de détails.
R est un projet collaboratif avec de nombreux contributeurs.
Tapez 'contributors()' pour plus d'information et
'citation()' pour la façon de le citer dans les publications.
Tapez 'demo()' pour des démonstrations, 'help()' pour l'aide
en ligne ou 'help.start()' pour obtenir l'aide au format HTML.
Tapez 'q()' pour quitter R.
> library(arrow)
Attachement du package : ‘arrow’
L'objet suivant est masqué depuis ‘package:utils’:
timestamp
> sessionInfo()
R version 4.3.0 (2023-04-21)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 22.04.2 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.10.0
LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.10.0
locale:
[1] LC_CTYPE=fr_FR.UTF-8 LC_NUMERIC=C
[3] LC_TIME=fr_FR.UTF-8 LC_COLLATE=fr_FR.UTF-8
[5] LC_MONETARY=fr_FR.UTF-8 LC_MESSAGES=fr_FR.UTF-8
[7] LC_PAPER=fr_FR.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=fr_FR.UTF-8 LC_IDENTIFICATION=C
time zone: America/Phoenix
tzcode source: system (glibc)
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] arrow_11.0.0.3
loaded via a namespace (and not attached):
[1] tidyselect_1.2.0 bit_4.0.5 compiler_4.3.0 magrittr_2.0.3
[5] assertthat_0.2.1 R6_2.5.1 cli_3.6.1 glue_1.6.2
[9] bit64_4.0.5 vctrs_0.6.2 lifecycle_1.0.3 rlang_1.1.1
[13] purrr_1.0.1
> one_level_tree <- tempfile()
> write_dataset(mtcars, one_level_tree, partitioning = "cyl")
*** caught illegal operation ***
address 0x7f976687f2c7, cause 'illegal operand'
Traceback:
1: ExecPlan_Write(self, node, prepare_key_value_metadata(node$final_metadata()), ...)
2: plan$Write(final_node, options, path_and_fs$fs, path_and_fs$path, partitioning, basename_template, existing_data_behavior, max_partitions, max_open_files, max_rows_per_file, min_rows_per_group, max_rows_per_group)
3: write_dataset(mtcars, one_level_tree, partitioning = "cyl")
An irrecoverable exception occurred. R is aborting now ...
Instruction non permise (core dumped)
```
GCC 11.3 + R 4.1.2 both provided by Ubuntu binary packages below,
```
(base) tdhock@tdhock-MacBook:~$ R --vanilla < R/arrow-crash.R
R version 4.1.2 (2021-11-01) -- "Bird Hippie"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R est un logiciel libre livré sans AUCUNE GARANTIE.
Vous pouvez le redistribuer sous certaines conditions.
Tapez 'license()' ou 'licence()' pour plus de détails.
R est un projet collaboratif avec de nombreux contributeurs.
Tapez 'contributors()' pour plus d'information et
'citation()' pour la façon de le citer dans les publications.
Tapez 'demo()' pour des démonstrations, 'help()' pour l'aide
en ligne ou 'help.start()' pour obtenir l'aide au format HTML.
Tapez 'q()' pour quitter R.
> library(arrow)
Attachement du package : ‘arrow’
L'objet suivant est masqué depuis ‘package:utils’:
timestamp
> sessionInfo()
R version 4.1.2 (2021-11-01)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 22.04.2 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.10.0
LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.10.0
locale:
[1] LC_CTYPE=fr_FR.UTF-8 LC_NUMERIC=C
[3] LC_TIME=fr_FR.UTF-8 LC_COLLATE=fr_FR.UTF-8
[5] LC_MONETARY=fr_FR.UTF-8 LC_MESSAGES=fr_FR.UTF-8
[7] LC_PAPER=fr_FR.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=fr_FR.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] arrow_11.0.0.3
loaded via a namespace (and not attached):
[1] tidyselect_1.1.2 bit_4.0.4 compiler_4.1.2 magrittr_2.0.2
[5] assertthat_0.2.1 R6_2.5.1 cli_3.2.0 glue_1.6.1
[9] bit64_4.0.5 vctrs_0.3.8 rlang_1.0.1 purrr_0.3.4
> one_level_tree <- tempfile()
> write_dataset(mtcars, one_level_tree, partitioning = "cyl")
*** caught illegal operation ***
address 0x7fb67b3ea027, cause 'illegal operand'
Traceback:
1: ExecPlan_Write(self, node, prepare_key_value_metadata(node$final_metadata()), ...)
2: plan$Write(final_node, options, path_and_fs$fs, path_and_fs$path, partitioning, basename_template, existing_data_behavior, max_partitions, max_open_files, max_rows_per_file, min_rows_per_group, max_rows_per_group)
3: write_dataset(mtcars, one_level_tree, partitioning = "cyl")
An irrecoverable exception occurred. R is aborting now ...
Instruction non permise (core dumped)
```
Running either through valgrind works fine (no segfault), see below.
```
(base) tdhock@tdhock-MacBook:~$ R -d valgrind --vanilla < R/arrow-crash.R
==97829== Memcheck, a memory error detector
==97829== Copyright (C) 2002-2022, and GNU GPL'd, by Julian Seward et al.
==97829== Using Valgrind-3.20.0 and LibVEX; rerun with -h for copyright info
==97829== Command: /usr/lib/R/bin/exec/R --vanilla
==97829==
R version 4.1.2 (2021-11-01) -- "Bird Hippie"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R est un logiciel libre livré sans AUCUNE GARANTIE.
Vous pouvez le redistribuer sous certaines conditions.
Tapez 'license()' ou 'licence()' pour plus de détails.
R est un projet collaboratif avec de nombreux contributeurs.
Tapez 'contributors()' pour plus d'information et
'citation()' pour la façon de le citer dans les publications.
Tapez 'demo()' pour des démonstrations, 'help()' pour l'aide
en ligne ou 'help.start()' pour obtenir l'aide au format HTML.
Tapez 'q()' pour quitter R.
> library(arrow)
Attachement du package : ‘arrow’
L'objet suivant est masqué depuis ‘package:utils’:
timestamp
> sessionInfo()
R version 4.1.2 (2021-11-01)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 22.04.2 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.10.0
LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.10.0
locale:
[1] LC_CTYPE=fr_FR.UTF-8 LC_NUMERIC=C
[3] LC_TIME=fr_FR.UTF-8 LC_COLLATE=fr_FR.UTF-8
[5] LC_MONETARY=fr_FR.UTF-8 LC_MESSAGES=fr_FR.UTF-8
[7] LC_PAPER=fr_FR.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=fr_FR.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] arrow_11.0.0.3
loaded via a namespace (and not attached):
[1] tidyselect_1.1.2 bit_4.0.4 compiler_4.1.2 magrittr_2.0.2
[5] assertthat_0.2.1 R6_2.5.1 cli_3.2.0 glue_1.6.1
[9] bit64_4.0.5 vctrs_0.3.8 rlang_1.0.1 purrr_0.3.4
> one_level_tree <- tempfile()
> write_dataset(mtcars, one_level_tree, partitioning = "cyl")
>
==97829==
==97829== HEAP SUMMARY:
==97829== in use at exit: 112,522,453 bytes in 23,761 blocks
==97829== total heap usage: 135,614 allocs, 111,853 frees, 259,936,158 bytes allocated
==97829==
==97829== LEAK SUMMARY:
==97829== definitely lost: 0 bytes in 0 blocks
==97829== indirectly lost: 0 bytes in 0 blocks
==97829== possibly lost: 12,752 bytes in 8 blocks
==97829== still reachable: 112,509,701 bytes in 23,753 blocks
==97829== of which reachable via heuristic:
==97829== newarray : 4,264 bytes in 1 blocks
==97829== suppressed: 0 bytes in 0 blocks
==97829== Rerun with --leak-check=full to see details of leaked memory
==97829==
==97829== For lists of detected and suppressed errors, rerun with: -s
==97829== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0)
```
All of the above is for the current CRAN version `arrow_11.0.0.3` but this also happens with arrow version 10, see below,
```
(base) tdhock@tdhock-MacBook:~$ R CMD INSTALL ~/Downloads/arrow_10.0.0.tar.gz
Le chargement a nécessité le package : grDevices
* installing to library ‘/home/tdhock/R/x86_64-pc-linux-gnu-library/4.1’
* installing *source* package ‘arrow’ ...
** package ‘arrow’ successfully unpacked and MD5 sums checked
** using staged installation
Le chargement a nécessité le package : grDevices
*** Found libcurl and openssl >= 3.0.0
PKG_CFLAGS=-I/tmp/Rtmp3363P8/R.INSTALL184d46c388317/arrow/libarrow/arrow-10.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS
PKG_LIBS=-L/tmp/Rtmp3363P8/R.INSTALL184d46c388317/arrow/libarrow/arrow-10.0.0/lib -larrow_dataset -lparquet -L/arrow/r/libarrow/dist/lib -larrow -larrow_bundled_dependencies -larrow -larrow_bundled_dependencies -larrow_dataset -lparquet -lssl -lcrypto -lcurl -lssl -lcrypto -lcurl
** libs
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I/tmp/Rtmp3363P8/R.INSTALL184d46c388317/arrow/libarrow/arrow-10.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/usr/lib/R/site-library/cpp11/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4A2Reg/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RTasks.cpp -o RTasks.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I/tmp/Rtmp3363P8/R.INSTALL184d46c388317/arrow/libarrow/arrow-10.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/usr/lib/R/site-library/cpp11/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4A2Reg/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c altrep.cpp -o altrep.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I/tmp/Rtmp3363P8/R.INSTALL184d46c388317/arrow/libarrow/arrow-10.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/usr/lib/R/site-library/cpp11/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4A2Reg/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c array.cpp -o array.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I/tmp/Rtmp3363P8/R.INSTALL184d46c388317/arrow/libarrow/arrow-10.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/usr/lib/R/site-library/cpp11/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4A2Reg/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c array_to_vector.cpp -o array_to_vector.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I/tmp/Rtmp3363P8/R.INSTALL184d46c388317/arrow/libarrow/arrow-10.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/usr/lib/R/site-library/cpp11/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4A2Reg/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c arraydata.cpp -o arraydata.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I/tmp/Rtmp3363P8/R.INSTALL184d46c388317/arrow/libarrow/arrow-10.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/usr/lib/R/site-library/cpp11/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4A2Reg/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c arrowExports.cpp -o arrowExports.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I/tmp/Rtmp3363P8/R.INSTALL184d46c388317/arrow/libarrow/arrow-10.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/usr/lib/R/site-library/cpp11/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4A2Reg/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bridge.cpp -o bridge.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I/tmp/Rtmp3363P8/R.INSTALL184d46c388317/arrow/libarrow/arrow-10.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/usr/lib/R/site-library/cpp11/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4A2Reg/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c buffer.cpp -o buffer.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I/tmp/Rtmp3363P8/R.INSTALL184d46c388317/arrow/libarrow/arrow-10.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/usr/lib/R/site-library/cpp11/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4A2Reg/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c chunkedarray.cpp -o chunkedarray.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I/tmp/Rtmp3363P8/R.INSTALL184d46c388317/arrow/libarrow/arrow-10.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/usr/lib/R/site-library/cpp11/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4A2Reg/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c compression.cpp -o compression.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I/tmp/Rtmp3363P8/R.INSTALL184d46c388317/arrow/libarrow/arrow-10.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/usr/lib/R/site-library/cpp11/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4A2Reg/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c compute-exec.cpp -o compute-exec.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I/tmp/Rtmp3363P8/R.INSTALL184d46c388317/arrow/libarrow/arrow-10.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/usr/lib/R/site-library/cpp11/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4A2Reg/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c compute.cpp -o compute.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I/tmp/Rtmp3363P8/R.INSTALL184d46c388317/arrow/libarrow/arrow-10.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/usr/lib/R/site-library/cpp11/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4A2Reg/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c config.cpp -o config.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I/tmp/Rtmp3363P8/R.INSTALL184d46c388317/arrow/libarrow/arrow-10.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/usr/lib/R/site-library/cpp11/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4A2Reg/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c csv.cpp -o csv.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I/tmp/Rtmp3363P8/R.INSTALL184d46c388317/arrow/libarrow/arrow-10.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/usr/lib/R/site-library/cpp11/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4A2Reg/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dataset.cpp -o dataset.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I/tmp/Rtmp3363P8/R.INSTALL184d46c388317/arrow/libarrow/arrow-10.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/usr/lib/R/site-library/cpp11/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4A2Reg/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c datatype.cpp -o datatype.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I/tmp/Rtmp3363P8/R.INSTALL184d46c388317/arrow/libarrow/arrow-10.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/usr/lib/R/site-library/cpp11/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4A2Reg/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c expression.cpp -o expression.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I/tmp/Rtmp3363P8/R.INSTALL184d46c388317/arrow/libarrow/arrow-10.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/usr/lib/R/site-library/cpp11/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4A2Reg/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c extension-impl.cpp -o extension-impl.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I/tmp/Rtmp3363P8/R.INSTALL184d46c388317/arrow/libarrow/arrow-10.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/usr/lib/R/site-library/cpp11/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4A2Reg/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c feather.cpp -o feather.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I/tmp/Rtmp3363P8/R.INSTALL184d46c388317/arrow/libarrow/arrow-10.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/usr/lib/R/site-library/cpp11/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4A2Reg/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c field.cpp -o field.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I/tmp/Rtmp3363P8/R.INSTALL184d46c388317/arrow/libarrow/arrow-10.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/usr/lib/R/site-library/cpp11/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4A2Reg/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c filesystem.cpp -o filesystem.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I/tmp/Rtmp3363P8/R.INSTALL184d46c388317/arrow/libarrow/arrow-10.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/usr/lib/R/site-library/cpp11/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4A2Reg/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c imports.cpp -o imports.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I/tmp/Rtmp3363P8/R.INSTALL184d46c388317/arrow/libarrow/arrow-10.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/usr/lib/R/site-library/cpp11/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4A2Reg/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c io.cpp -o io.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I/tmp/Rtmp3363P8/R.INSTALL184d46c388317/arrow/libarrow/arrow-10.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/usr/lib/R/site-library/cpp11/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4A2Reg/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c json.cpp -o json.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I/tmp/Rtmp3363P8/R.INSTALL184d46c388317/arrow/libarrow/arrow-10.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/usr/lib/R/site-library/cpp11/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4A2Reg/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c memorypool.cpp -o memorypool.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I/tmp/Rtmp3363P8/R.INSTALL184d46c388317/arrow/libarrow/arrow-10.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/usr/lib/R/site-library/cpp11/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4A2Reg/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c message.cpp -o message.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I/tmp/Rtmp3363P8/R.INSTALL184d46c388317/arrow/libarrow/arrow-10.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/usr/lib/R/site-library/cpp11/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4A2Reg/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c parquet.cpp -o parquet.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I/tmp/Rtmp3363P8/R.INSTALL184d46c388317/arrow/libarrow/arrow-10.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/usr/lib/R/site-library/cpp11/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4A2Reg/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c r_to_arrow.cpp -o r_to_arrow.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I/tmp/Rtmp3363P8/R.INSTALL184d46c388317/arrow/libarrow/arrow-10.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/usr/lib/R/site-library/cpp11/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4A2Reg/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c recordbatch.cpp -o recordbatch.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I/tmp/Rtmp3363P8/R.INSTALL184d46c388317/arrow/libarrow/arrow-10.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/usr/lib/R/site-library/cpp11/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4A2Reg/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c recordbatchreader.cpp -o recordbatchreader.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I/tmp/Rtmp3363P8/R.INSTALL184d46c388317/arrow/libarrow/arrow-10.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/usr/lib/R/site-library/cpp11/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4A2Reg/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c recordbatchwriter.cpp -o recordbatchwriter.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I/tmp/Rtmp3363P8/R.INSTALL184d46c388317/arrow/libarrow/arrow-10.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/usr/lib/R/site-library/cpp11/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4A2Reg/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c safe-call-into-r-impl.cpp -o safe-call-into-r-impl.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I/tmp/Rtmp3363P8/R.INSTALL184d46c388317/arrow/libarrow/arrow-10.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/usr/lib/R/site-library/cpp11/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4A2Reg/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c scalar.cpp -o scalar.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I/tmp/Rtmp3363P8/R.INSTALL184d46c388317/arrow/libarrow/arrow-10.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/usr/lib/R/site-library/cpp11/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4A2Reg/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c schema.cpp -o schema.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I/tmp/Rtmp3363P8/R.INSTALL184d46c388317/arrow/libarrow/arrow-10.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/usr/lib/R/site-library/cpp11/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4A2Reg/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c symbols.cpp -o symbols.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I/tmp/Rtmp3363P8/R.INSTALL184d46c388317/arrow/libarrow/arrow-10.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/usr/lib/R/site-library/cpp11/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4A2Reg/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c table.cpp -o table.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I/tmp/Rtmp3363P8/R.INSTALL184d46c388317/arrow/libarrow/arrow-10.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/usr/lib/R/site-library/cpp11/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4A2Reg/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c threadpool.cpp -o threadpool.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I/tmp/Rtmp3363P8/R.INSTALL184d46c388317/arrow/libarrow/arrow-10.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/usr/lib/R/site-library/cpp11/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4A2Reg/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c type_infer.cpp -o type_infer.o
g++ -std=gnu++17 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -o arrow.so RTasks.o altrep.o array.o array_to_vector.o arraydata.o arrowExports.o bridge.o buffer.o chunkedarray.o compression.o compute-exec.o compute.o config.o csv.o dataset.o datatype.o expression.o extension-impl.o feather.o field.o filesystem.o imports.o io.o json.o memorypool.o message.o parquet.o r_to_arrow.o recordbatch.o recordbatchreader.o recordbatchwriter.o safe-call-into-r-impl.o scalar.o schema.o symbols.o table.o threadpool.o type_infer.o -L/tmp/Rtmp3363P8/R.INSTALL184d46c388317/arrow/libarrow/arrow-10.0.0/lib -larrow_dataset -lparquet -L/arrow/r/libarrow/dist/lib -larrow -larrow_bundled_dependencies -larrow -larrow_bundled_dependencies -larrow_dataset -lparquet -lssl -lcrypto -lcurl -lssl -lcrypto -lcurl -L/usr/lib/R/lib -lR
installing to /home/tdhock/R/x86_64-pc-linux-gnu-library/4.1/00LOCK-arrow/00new/arrow/libs
** R
** inst
** byte-compile and prepare package for lazy loading
Le chargement a nécessité le package : grDevices
** help
*** installing help indices
** building package indices
Le chargement a nécessité le package : grDevices
** installing vignettes
** testing if installed package can be loaded from temporary location
Le chargement a nécessité le package : grDevices
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
Le chargement a nécessité le package : grDevices
** testing if installed package keeps a record of temporary installation path
* DONE (arrow)
(base) tdhock@tdhock-MacBook:~$ R --vanilla < R/arrow-crash.R
R version 4.1.2 (2021-11-01) -- "Bird Hippie"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R est un logiciel libre livré sans AUCUNE GARANTIE.
Vous pouvez le redistribuer sous certaines conditions.
Tapez 'license()' ou 'licence()' pour plus de détails.
R est un projet collaboratif avec de nombreux contributeurs.
Tapez 'contributors()' pour plus d'information et
'citation()' pour la façon de le citer dans les publications.
Tapez 'demo()' pour des démonstrations, 'help()' pour l'aide
en ligne ou 'help.start()' pour obtenir l'aide au format HTML.
Tapez 'q()' pour quitter R.
> library(arrow)
Attachement du package : ‘arrow’
L'objet suivant est masqué depuis ‘package:utils’:
timestamp
> sessionInfo()
R version 4.1.2 (2021-11-01)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 22.04.2 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.10.0
LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.10.0
locale:
[1] LC_CTYPE=fr_FR.UTF-8 LC_NUMERIC=C
[3] LC_TIME=fr_FR.UTF-8 LC_COLLATE=fr_FR.UTF-8
[5] LC_MONETARY=fr_FR.UTF-8 LC_MESSAGES=fr_FR.UTF-8
[7] LC_PAPER=fr_FR.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=fr_FR.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] arrow_10.0.0
loaded via a namespace (and not attached):
[1] tidyselect_1.1.2 bit_4.0.4 compiler_4.1.2 magrittr_2.0.2
[5] assertthat_0.2.1 R6_2.5.1 cli_3.2.0 glue_1.6.1
[9] bit64_4.0.5 vctrs_0.3.8 rlang_1.0.1 purrr_0.3.4
> one_level_tree <- tempfile()
> write_dataset(mtcars, one_level_tree, partitioning = "cyl")
*** caught illegal operation ***
address 0x7f44b08be647, cause 'illegal operand'
Traceback:
1: ExecPlan_Write(self, node, prepare_key_value_metadata(node$final_metadata()), ...)
2: plan$Write(final_node, options, path_and_fs$fs, path_and_fs$path, partitioning, basename_template, existing_data_behavior, max_partitions, max_open_files, max_rows_per_file, min_rows_per_group, max_rows_per_group)
3: write_dataset(mtcars, one_level_tree, partitioning = "cyl")
An irrecoverable exception occurred. R is aborting now ...
Instruction non permise (core dumped)
```
Same segfault if I install pre-compiled arrow binary packages from Rstudio via code below,
```r
options(
HTTPUserAgent =
sprintf(
"R/%s R (%s)",
getRversion(),
paste(getRversion(), R.version["platform"], R.version["arch"], R.version["os"])
)
)
install.packages("arrow", repos = "https://packagemanager.rstudio.com/all/__linux__/jammy/latest")
```
Finally `arrow_11.0.0` installed via conda does work on this machine, see below,
```
(arrow) tdhock@tdhock-MacBook:~$ R --vanilla < R/arrow-crash.R
R version 4.2.3 (2023-03-15) -- "Shortstop Beagle"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-conda-linux-gnu (64-bit)
R est un logiciel libre livré sans AUCUNE GARANTIE.
Vous pouvez le redistribuer sous certaines conditions.
Tapez 'license()' ou 'licence()' pour plus de détails.
R est un projet collaboratif avec de nombreux contributeurs.
Tapez 'contributors()' pour plus d'information et
'citation()' pour la façon de le citer dans les publications.
Tapez 'demo()' pour des démonstrations, 'help()' pour l'aide
en ligne ou 'help.start()' pour obtenir l'aide au format HTML.
Tapez 'q()' pour quitter R.
> library(arrow)
Attachement du package : ‘arrow’
L'objet suivant est masqué depuis ‘package:utils’:
timestamp
> sessionInfo()
R version 4.2.3 (2023-03-15)
Platform: x86_64-conda-linux-gnu (64-bit)
Running under: Ubuntu 22.04.2 LTS
Matrix products: default
BLAS/LAPACK: /home/tdhock/miniconda3/envs/arrow/lib/libopenblasp-r0.3.21.so
locale:
[1] LC_CTYPE=fr_FR.UTF-8 LC_NUMERIC=C
[3] LC_TIME=fr_FR.UTF-8 LC_COLLATE=fr_FR.UTF-8
[5] LC_MONETARY=fr_FR.UTF-8 LC_MESSAGES=fr_FR.UTF-8
[7] LC_PAPER=fr_FR.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=fr_FR.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] arrow_11.0.0
loaded via a namespace (and not attached):
[1] tidyselect_1.2.0 bit_4.0.5 compiler_4.2.3 magrittr_2.0.3
[5] assertthat_0.2.1 R6_2.5.1 cli_3.6.1 glue_1.6.2
[9] bit64_4.0.5 vctrs_0.6.2 lifecycle_1.0.3 rlang_1.1.1
[13] purrr_1.0.1
> one_level_tree <- tempfile()
> write_dataset(mtcars, one_level_tree, partitioning = "cyl")
>
```
ldd output below, in case that helps
```
(base) tdhock@tdhock-MacBook:~$ ldd /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/arrow.so
linux-vdso.so.1 (0x00007ffdb99f0000)
libarrow_substrait.so.1100 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../../libarrow_substrait.so.1100 (0x00007f8ce9667000)
libarrow_dataset.so.1100 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../../libarrow_dataset.so.1100 (0x00007f8ce94f7000)
libparquet.so.1100 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../../libparquet.so.1100 (0x00007f8ce91d0000)
libarrow.so.1100 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../../libarrow.so.1100 (0x00007f8ce7a02000)
libR.so => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../lib/libR.so (0x00007f8ce752e000)
libstdc++.so.6 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../../libstdc++.so.6 (0x00007f8ce7378000)
libm.so.6 => /lib/x86_64-linux-gnu/libm.so.6 (0x00007f8ce727c000)
libgcc_s.so.1 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../../libgcc_s.so.1 (0x00007f8ce7263000)
libc.so.6 => /lib/x86_64-linux-gnu/libc.so.6 (0x00007f8ce703b000)
libprotobuf.so.32 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../.././libprotobuf.so.32 (0x00007f8ce6d87000)
/lib64/ld-linux-x86-64.so.2 (0x00007f8ce9a7c000)
libthrift.so.0.18.1 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../.././libthrift.so.0.18.1 (0x00007f8ce6cde000)
libcrypto.so.3 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../.././libcrypto.so.3 (0x00007f8ce67d5000)
libbrotlienc.so.1 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../.././libbrotlienc.so.1 (0x00007f8ce6737000)
libbrotlidec.so.1 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../.././libbrotlidec.so.1 (0x00007f8ce6729000)
liborc.so => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../.././liborc.so (0x00007f8ce65e5000)
libglog.so.1 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../.././libglog.so.1 (0x00007f8ce65a8000)
libutf8proc.so.2 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../.././libutf8proc.so.2 (0x00007f8ce6550000)
libdl.so.2 => /lib/x86_64-linux-gnu/libdl.so.2 (0x00007f8ce654b000)
librt.so.1 => /lib/x86_64-linux-gnu/librt.so.1 (0x00007f8ce6546000)
libbz2.so.1.0 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../.././libbz2.so.1.0 (0x00007f8ce6532000)
liblz4.so.1 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../.././liblz4.so.1 (0x00007f8ce6507000)
libsnappy.so.1 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../.././libsnappy.so.1 (0x00007f8ce64f8000)
libz.so.1 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../.././libz.so.1 (0x00007f8ce64de000)
libzstd.so.1 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../.././libzstd.so.1 (0x00007f8ce641b000)
libgoogle_cloud_cpp_storage.so.2 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../.././libgoogle_cloud_cpp_storage.so.2 (0x00007f8ce6177000)
libaws-cpp-sdk-identity-management.so => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../.././libaws-cpp-sdk-identity-management.so (0x00007f8ce614b000)
libaws-cpp-sdk-s3.so => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../.././libaws-cpp-sdk-s3.so (0x00007f8ce5e73000)
libaws-cpp-sdk-core.so => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../.././libaws-cpp-sdk-core.so (0x00007f8ce5d1c000)
libre2.so.10 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../.././libre2.so.10 (0x00007f8ce5cb7000)
libgoogle_cloud_cpp_common.so.2 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../.././libgoogle_cloud_cpp_common.so.2 (0x00007f8ce5c4f000)
libabsl_time.so.2301.0.0 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../.././libabsl_time.so.2301.0.0 (0x00007f8ce5c38000)
libabsl_time_zone.so.2301.0.0 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../.././libabsl_time_zone.so.2301.0.0 (0x00007f8ce5c17000)
libaws-crt-cpp.so => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../.././libaws-crt-cpp.so (0x00007f8ce5b89000)
libpthread.so.0 => /lib/x86_64-linux-gnu/libpthread.so.0 (0x00007f8ce5b84000)
libblas.so.3 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../lib/../../libblas.so.3 (0x00007f8ce38dc000)
libreadline.so.8 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../lib/../../libreadline.so.8 (0x00007f8ce3883000)
libpcre2-8.so.0 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../lib/../../libpcre2-8.so.0 (0x00007f8ce37e1000)
liblzma.so.5 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../lib/../../liblzma.so.5 (0x00007f8ce37b8000)
libiconv.so.2 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../lib/../../libiconv.so.2 (0x00007f8ce36d1000)
libicuuc.so.72 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../lib/../../libicuuc.so.72 (0x00007f8ce34ca000)
libicui18n.so.72 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../lib/../../libicui18n.so.72 (0x00007f8ce319a000)
libgomp.so.1 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../lib/../../libgomp.so.1 (0x00007f8ce315f000)
libssl.so.3 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../../././libssl.so.3 (0x00007f8ce30bd000)
libbrotlicommon.so.1 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../../././libbrotlicommon.so.1 (0x00007f8ce309a000)
libgflags.so.2.2 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../../././libgflags.so.2.2 (0x00007f8ce3075000)
libgoogle_cloud_cpp_rest_internal.so.2 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../../././libgoogle_cloud_cpp_rest_internal.so.2 (0x00007f8ce2fa5000)
libcrc32c.so.1 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../../././libcrc32c.so.1 (0x00007f8ce2f9f000)
libcurl.so.4 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../../././libcurl.so.4 (0x00007f8ce2ef3000)
libabsl_crc32c.so.2301.0.0 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../../././libabsl_crc32c.so.2301.0.0 (0x00007f8ce2eed000)
libabsl_str_format_internal.so.2301.0.0 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../../././libabsl_str_format_internal.so.2301.0.0 (0x00007f8ce2ed2000)
libabsl_strings.so.2301.0.0 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../../././libabsl_strings.so.2301.0.0 (0x00007f8ce2eb0000)
libabsl_strings_internal.so.2301.0.0 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../../././libabsl_strings_internal.so.2301.0.0 (0x00007f8ce2eaa000)
libaws-cpp-sdk-cognito-identity.so => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../../././libaws-cpp-sdk-cognito-identity.so (0x00007f8ce2e08000)
libaws-cpp-sdk-sts.so => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../../././libaws-cpp-sdk-sts.so (0x00007f8ce2dbb000)
libaws-c-event-stream.so.1.0.0 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../../././libaws-c-event-stream.so.1.0.0 (0x00007f8ce2da2000)
libaws-checksums.so.1.0.0 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../../././libaws-checksums.so.1.0.0 (0x00007f8ce2d92000)
libaws-c-common.so.1 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../../././libaws-c-common.so.1 (0x00007f8ce2d55000)
libabsl_int128.so.2301.0.0 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../../././libabsl_int128.so.2301.0.0 (0x00007f8ce2d4e000)
libabsl_base.so.2301.0.0 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../../././libabsl_base.so.2301.0.0 (0x00007f8ce2d48000)
libabsl_raw_logging_internal.so.2301.0.0 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../../././libabsl_raw_logging_internal.so.2301.0.0 (0x00007f8ce2d43000)
libaws-c-mqtt.so.1.0.0 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../../././libaws-c-mqtt.so.1.0.0 (0x00007f8ce2cff000)
libaws-c-s3.so.0unstable => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../../././libaws-c-s3.so.0unstable (0x00007f8ce2cd9000)
libaws-c-auth.so.1.0.0 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../../././libaws-c-auth.so.1.0.0 (0x00007f8ce2ca9000)
libaws-c-http.so.1.0.0 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../../././libaws-c-http.so.1.0.0 (0x00007f8ce2c45000)
libaws-c-io.so.1.0.0 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../../././libaws-c-io.so.1.0.0 (0x00007f8ce2bfe000)
libaws-c-cal.so.1.0.0 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../../././libaws-c-cal.so.1.0.0 (0x00007f8ce2bea000)
libaws-c-sdkutils.so.1.0.0 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../../././libaws-c-sdkutils.so.1.0.0 (0x00007f8ce2bd1000)
libgfortran.so.5 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../lib/../.././libgfortran.so.5 (0x00007f8ce2a26000)
libtinfo.so.6 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../lib/../.././libtinfo.so.6 (0x00007f8ce29e6000)
libicudata.so.72 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../lib/../.././libicudata.so.72 (0x00007f8ce0c15000)
libnghttp2.so.14 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../.././././libnghttp2.so.14 (0x00007f8ce0be6000)
libssh2.so.1 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../.././././libssh2.so.1 (0x00007f8ce0ba2000)
libgssapi_krb5.so.2 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../.././././libgssapi_krb5.so.2 (0x00007f8ce0b50000)
libabsl_crc_internal.so.2301.0.0 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../.././././libabsl_crc_internal.so.2301.0.0 (0x00007f8ce0b49000)
libabsl_spinlock_wait.so.2301.0.0 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../.././././libabsl_spinlock_wait.so.2301.0.0 (0x00007f8ce0b42000)
libaws-c-compression.so.1.0.0 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../.././././libaws-c-compression.so.1.0.0 (0x00007f8ce0b3d000)
libs2n.so.1 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../.././././libs2n.so.1 (0x00007f8ce09fc000)
libquadmath.so.0 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../lib/../../././libquadmath.so.0 (0x00007f8ce09c2000)
libkrb5.so.3 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../../././././libkrb5.so.3 (0x00007f8ce08e9000)
libk5crypto.so.3 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../../././././libk5crypto.so.3 (0x00007f8ce08d0000)
libcom_err.so.3 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../../././././libcom_err.so.3 (0x00007f8ce08ca000)
libkrb5support.so.0 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../../././././libkrb5support.so.0 (0x00007f8ce08bb000)
libkeyutils.so.1 => /home/tdhock/miniconda3/envs/arrow/lib/R/library/arrow/libs/../../../../././././libkeyutils.so.1 (0x00007f8ce08b4000)
libresolv.so.2 => /lib/x86_64-linux-gnu/libresolv.so.2 (0x00007f8ce089e000)
(base) tdhock@tdhock-MacBook:~$ ldd /home/tdhock/R/x86_64-pc-linux-gnu-library/4.1/arrow/libs/arrow.so
linux-vdso.so.1 (0x00007ffe711fb000)
libcurl.so.4 => /lib/x86_64-linux-gnu/libcurl.so.4 (0x00007fa9ce0c7000)
libcrypto.so.3 => /lib/x86_64-linux-gnu/libcrypto.so.3 (0x00007fa9cdc84000)
libR.so => /lib/libR.so (0x00007fa9cd7cb000)
libstdc++.so.6 => /lib/x86_64-linux-gnu/libstdc++.so.6 (0x00007fa9cd5a1000)
libm.so.6 => /lib/x86_64-linux-gnu/libm.so.6 (0x00007fa9cd4ba000)
libgcc_s.so.1 => /lib/x86_64-linux-gnu/libgcc_s.so.1 (0x00007fa9cd49a000)
libc.so.6 => /lib/x86_64-linux-gnu/libc.so.6 (0x00007fa9cd270000)
/lib64/ld-linux-x86-64.so.2 (0x00007fa9d0ad1000)
libnghttp2.so.14 => /lib/x86_64-linux-gnu/libnghttp2.so.14 (0x00007fa9cd246000)
libidn2.so.0 => /lib/x86_64-linux-gnu/libidn2.so.0 (0x00007fa9cd225000)
librtmp.so.1 => /lib/x86_64-linux-gnu/librtmp.so.1 (0x00007fa9cd206000)
libssh.so.4 => /lib/x86_64-linux-gnu/libssh.so.4 (0x00007fa9cd199000)
libpsl.so.5 => /lib/x86_64-linux-gnu/libpsl.so.5 (0x00007fa9cd185000)
libssl.so.3 => /lib/x86_64-linux-gnu/libssl.so.3 (0x00007fa9cd0df000)
libgssapi_krb5.so.2 => /lib/x86_64-linux-gnu/libgssapi_krb5.so.2 (0x00007fa9cd08b000)
libldap-2.5.so.0 => /lib/x86_64-linux-gnu/libldap-2.5.so.0 (0x00007fa9cd02c000)
liblber-2.5.so.0 => /lib/x86_64-linux-gnu/liblber-2.5.so.0 (0x00007fa9cd01b000)
libzstd.so.1 => /lib/x86_64-linux-gnu/libzstd.so.1 (0x00007fa9ccf4c000)
libbrotlidec.so.1 => /lib/x86_64-linux-gnu/libbrotlidec.so.1 (0x00007fa9ccf3e000)
libz.so.1 => /lib/x86_64-linux-gnu/libz.so.1 (0x00007fa9ccf20000)
libblas.so.3 => /lib/x86_64-linux-gnu/libblas.so.3 (0x00007fa9cce7a000)
libreadline.so.8 => /lib/x86_64-linux-gnu/libreadline.so.8 (0x00007fa9cce26000)
libpcre2-8.so.0 => /lib/x86_64-linux-gnu/libpcre2-8.so.0 (0x00007fa9ccd8f000)
liblzma.so.5 => /lib/x86_64-linux-gnu/liblzma.so.5 (0x00007fa9ccd64000)
libbz2.so.1.0 => /lib/x86_64-linux-gnu/libbz2.so.1.0 (0x00007fa9ccd51000)
libtirpc.so.3 => /lib/x86_64-linux-gnu/libtirpc.so.3 (0x00007fa9ccd21000)
libicuuc.so.70 => /lib/x86_64-linux-gnu/libicuuc.so.70 (0x00007fa9ccb26000)
libicui18n.so.70 => /lib/x86_64-linux-gnu/libicui18n.so.70 (0x00007fa9cc7f7000)
libgomp.so.1 => /lib/x86_64-linux-gnu/libgomp.so.1 (0x00007fa9cc7ad000)
libunistring.so.2 => /lib/x86_64-linux-gnu/libunistring.so.2 (0x00007fa9cc603000)
libgnutls.so.30 => /lib/x86_64-linux-gnu/libgnutls.so.30 (0x00007fa9cc416000)
libhogweed.so.6 => /lib/x86_64-linux-gnu/libhogweed.so.6 (0x00007fa9cc3ce000)
libnettle.so.8 => /lib/x86_64-linux-gnu/libnettle.so.8 (0x00007fa9cc388000)
libgmp.so.10 => /lib/x86_64-linux-gnu/libgmp.so.10 (0x00007fa9cc306000)
libkrb5.so.3 => /lib/x86_64-linux-gnu/libkrb5.so.3 (0x00007fa9cc23b000)
libk5crypto.so.3 => /lib/x86_64-linux-gnu/libk5crypto.so.3 (0x00007fa9cc20a000)
libcom_err.so.2 => /lib/x86_64-linux-gnu/libcom_err.so.2 (0x00007fa9cc204000)
libkrb5support.so.0 => /lib/x86_64-linux-gnu/libkrb5support.so.0 (0x00007fa9cc1f6000)
libsasl2.so.2 => /lib/x86_64-linux-gnu/libsasl2.so.2 (0x00007fa9cc1db000)
libbrotlicommon.so.1 => /lib/x86_64-linux-gnu/libbrotlicommon.so.1 (0x00007fa9cc1b8000)
libtinfo.so.6 => /lib/x86_64-linux-gnu/libtinfo.so.6 (0x00007fa9cc186000)
libicudata.so.70 => /lib/x86_64-linux-gnu/libicudata.so.70 (0x00007fa9ca566000)
libp11-kit.so.0 => /lib/x86_64-linux-gnu/libp11-kit.so.0 (0x00007fa9ca42b000)
libtasn1.so.6 => /lib/x86_64-linux-gnu/libtasn1.so.6 (0x00007fa9ca413000)
libkeyutils.so.1 => /lib/x86_64-linux-gnu/libkeyutils.so.1 (0x00007fa9ca40c000)
libresolv.so.2 => /lib/x86_64-linux-gnu/libresolv.so.2 (0x00007fa9ca3f8000)
libffi.so.8 => /lib/x86_64-linux-gnu/libffi.so.8 (0x00007fa9ca3e9000)
```
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