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Posted to dev@ctakes.apache.org by "Wilson, Brian" <BW...@tuftsmedicalcenter.org> on 2015/09/17 23:52:04 UTC
Re: [cancer-informatics] Fwd: BD2K Coordination Center Solicits
Hackathon Proposals
> > Food for thought :)
> >
> > The Big Data to Knowledge Coordination Center (BD2KCC) is announcing
> > a call for hackathon event proposals related to biomedical big data
> > science. The BD2KCC is part of the National Institutes of Health
> > (NIH)’s Big Data to Knowledge (BD2K) program, which is committed to
> > fostering consortium activities and collaborations among the
> > nationwide BD2K investigator teams. The current request for
> > applications aims to advance the mission of BD2K by inviting
> > proposals to host public hackathon events that will harness broad
> > expertise for the development and application of biomedical big data
> > software tools. Applications for the first round of funding are due
> > October 15th, 2015. More information about this opportunity can be
> > found at: http://bd2kcc.org/files/hackathons.pdf.
>
>
>
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Tufts Medical Center HIPAA Hotline at (617) 636-4422. If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Re: [cancer-informatics] Fwd: BD2K Coordination Center Solicits
Hackathon Proposals
Posted by andy mcmurry <mc...@gmail.com>.
Awesome! Britt and I used ctakes to combine public and private data in this
paper
"*Improved **de-identification** of physician notes through integrative
modeling of both public and private medical text*"
http://www.biomedcentral.com/1472-6947/13/112
On Sep 24, 2015 11:02 AM, "Mattmann, Chris A (3980)" <
chris.a.mattmann@jpl.nasa.gov> wrote:
> Hey Andy,
>
> Sure, the clinical use case is to combine public and private data.
> So take a company’s private clinical data, and research, and then
> map it e.g.,to public research publications and connect the two.
>
> So the tool I’m talking about is Shangridocs:
>
> http://github.com/chrismattmann/shangridocs/
>
> Would love to chat if people are interested in doing some funding
> proposal related to this. I see a big need for it across multiple
> domains.
>
> Cheers,
> Chris
>
> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
> Chris Mattmann, Ph.D.
> Chief Architect
> Instrument Software and Science Data Systems Section (398)
> NASA Jet Propulsion Laboratory Pasadena, CA 91109 USA
> Office: 168-519, Mailstop: 168-527
> Email: chris.a.mattmann@nasa.gov
> WWW: http://sunset.usc.edu/~mattmann/
> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
> Adjunct Associate Professor, Computer Science Department
> University of Southern California, Los Angeles, CA 90089 USA
> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
>
>
>
>
>
> -----Original Message-----
> From: andy mcmurry <mc...@gmail.com>
> Reply-To: "dev@ctakes.apache.org" <de...@ctakes.apache.org>
> Date: Saturday, September 19, 2015 at 8:44 PM
> To: "dev@ctakes.apache.org" <de...@ctakes.apache.org>
> Cc: "user@ctakes.apache.org" <us...@ctakes.apache.org>
> Subject: Re: [cancer-informatics] Fwd: BD2K Coordination Center Solicits
> Hackathon Proposals
>
> >Chris: sounds interesting. could you share some of your clinical use
> >cases ?
> >
> >On Sep 19, 2015 9:27 AM, "Mattmann, Chris A (3980)" <
> >chris.a.mattmann@jpl.nasa.gov> wrote:
> >>
> >> Hey Folks,
> >>
> >> If anyone wants to discuss how JPL can contribute to a BD2K
> >> proposal or if someone is already leading it, I would definitely
> >> be interested in contributing. We have been combining Tika, cTAKES,
> >> and other software (Spark, OODT) into a solution we call “Shangridocs”
> >> which could be quite compelling here.
> >>
> >> Please feel free to contact me off-line and would love to discuss.
> >>
> >> Cheers,
> >> Chris
> >>
> >> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
> >> Chris Mattmann, Ph.D.
> >> Chief Architect
> >> Instrument Software and Science Data Systems Section (398)
> >> NASA Jet Propulsion Laboratory Pasadena, CA 91109 USA
> >> Office: 168-519, Mailstop: 168-527
> >> Email: chris.a.mattmann@nasa.gov
> >> WWW: http://sunset.usc.edu/~mattmann/
> >> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
> >> Adjunct Associate Professor, Computer Science Department
> >> University of Southern California, Los Angeles, CA 90089 USA
> >> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
> >>
> >>
> >>
> >>
> >>
> >> -----Original Message-----
> >> From: andy mcmurry <mc...@gmail.com>
> >> Reply-To: "user@ctakes.apache.org" <us...@ctakes.apache.org>
> >> Date: Friday, September 18, 2015 at 4:24 PM
> >> To: "dev@ctakes.apache.org" <de...@ctakes.apache.org>
> >> Cc: "user@ctakes.apache.org" <us...@ctakes.apache.org>
> >> Subject: Re: [cancer-informatics] Fwd: BD2K Coordination Center Solicits
> >> Hackathon Proposals
> >>
> >> >+1 , I support the idea of cTAKES as an intermediate step for other
> >> >annotation sources, data "mash up".
> >> >Phenotypes -- Genes, etc.
> >> >
> >> >
> >> >On Thu, Sep 17, 2015 at 2:52 PM, Wilson, Brian
> >> ><BW...@tuftsmedicalcenter.org> wrote:
> >> >
> >> >
> >> >> > Food for thought :)
> >> >
> >> >> >
> >> >> > The Big Data to Knowledge Coordination Center (BD2KCC) is
> >>announcing
> >> >> > a call for hackathon event proposals related to biomedical big
> >>data
> >> >> > science. The BD2KCC is part of the National Institutes of Health
> >> >> > (NIH)’s Big Data to Knowledge (BD2K) program, which is committed to
> >> >> > fostering consortium activities and collaborations among the
> >> >> > nationwide BD2K investigator teams. The current request for
> >> >> > applications aims to advance the mission of BD2K by inviting
> >> >> > proposals to host public hackathon events that will harness broad
> >> >> > expertise for the development and application of biomedical big
> >>data
> >> >> > software tools. Applications for the first round of funding are due
> >> >> > October 15th, 2015. More information about this opportunity can be
> >> >> > found at:
> >> >http://bd2kcc.org/files/hackathons.pdf
> >> ><http://bd2kcc.org/files/hackathons.pdf>.
> >> >>
> >> >>
> >> >>
> >> >
> >> >The information in this e-mail is intended only for the person to whom
> >>it
> >> >is addressed. If you believe this e-mail was sent to you in error and
> >>the
> >> >e-mail contains patient information, please contact the Tufts Medical
> >> >Center HIPAA Hotline at
> >> >(617) 636-4422 <tel:%28617%29%20636-4422>. If the e-mail was sent to
> >>you
> >> >in error but does not contain patient information, please contact the
> >> >sender and properly dispose of the e-mail.
> >> >
> >> >
> >> >
> >> >
> >> >
> >>
>
>
Re: [cancer-informatics] Fwd: BD2K Coordination Center Solicits
Hackathon Proposals
Posted by andy mcmurry <mc...@gmail.com>.
Awesome! Britt and I used ctakes to combine public and private data in this
paper
"*Improved **de-identification** of physician notes through integrative
modeling of both public and private medical text*"
http://www.biomedcentral.com/1472-6947/13/112
On Sep 24, 2015 11:02 AM, "Mattmann, Chris A (3980)" <
chris.a.mattmann@jpl.nasa.gov> wrote:
> Hey Andy,
>
> Sure, the clinical use case is to combine public and private data.
> So take a company’s private clinical data, and research, and then
> map it e.g.,to public research publications and connect the two.
>
> So the tool I’m talking about is Shangridocs:
>
> http://github.com/chrismattmann/shangridocs/
>
> Would love to chat if people are interested in doing some funding
> proposal related to this. I see a big need for it across multiple
> domains.
>
> Cheers,
> Chris
>
> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
> Chris Mattmann, Ph.D.
> Chief Architect
> Instrument Software and Science Data Systems Section (398)
> NASA Jet Propulsion Laboratory Pasadena, CA 91109 USA
> Office: 168-519, Mailstop: 168-527
> Email: chris.a.mattmann@nasa.gov
> WWW: http://sunset.usc.edu/~mattmann/
> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
> Adjunct Associate Professor, Computer Science Department
> University of Southern California, Los Angeles, CA 90089 USA
> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
>
>
>
>
>
> -----Original Message-----
> From: andy mcmurry <mc...@gmail.com>
> Reply-To: "dev@ctakes.apache.org" <de...@ctakes.apache.org>
> Date: Saturday, September 19, 2015 at 8:44 PM
> To: "dev@ctakes.apache.org" <de...@ctakes.apache.org>
> Cc: "user@ctakes.apache.org" <us...@ctakes.apache.org>
> Subject: Re: [cancer-informatics] Fwd: BD2K Coordination Center Solicits
> Hackathon Proposals
>
> >Chris: sounds interesting. could you share some of your clinical use
> >cases ?
> >
> >On Sep 19, 2015 9:27 AM, "Mattmann, Chris A (3980)" <
> >chris.a.mattmann@jpl.nasa.gov> wrote:
> >>
> >> Hey Folks,
> >>
> >> If anyone wants to discuss how JPL can contribute to a BD2K
> >> proposal or if someone is already leading it, I would definitely
> >> be interested in contributing. We have been combining Tika, cTAKES,
> >> and other software (Spark, OODT) into a solution we call “Shangridocs”
> >> which could be quite compelling here.
> >>
> >> Please feel free to contact me off-line and would love to discuss.
> >>
> >> Cheers,
> >> Chris
> >>
> >> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
> >> Chris Mattmann, Ph.D.
> >> Chief Architect
> >> Instrument Software and Science Data Systems Section (398)
> >> NASA Jet Propulsion Laboratory Pasadena, CA 91109 USA
> >> Office: 168-519, Mailstop: 168-527
> >> Email: chris.a.mattmann@nasa.gov
> >> WWW: http://sunset.usc.edu/~mattmann/
> >> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
> >> Adjunct Associate Professor, Computer Science Department
> >> University of Southern California, Los Angeles, CA 90089 USA
> >> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
> >>
> >>
> >>
> >>
> >>
> >> -----Original Message-----
> >> From: andy mcmurry <mc...@gmail.com>
> >> Reply-To: "user@ctakes.apache.org" <us...@ctakes.apache.org>
> >> Date: Friday, September 18, 2015 at 4:24 PM
> >> To: "dev@ctakes.apache.org" <de...@ctakes.apache.org>
> >> Cc: "user@ctakes.apache.org" <us...@ctakes.apache.org>
> >> Subject: Re: [cancer-informatics] Fwd: BD2K Coordination Center Solicits
> >> Hackathon Proposals
> >>
> >> >+1 , I support the idea of cTAKES as an intermediate step for other
> >> >annotation sources, data "mash up".
> >> >Phenotypes -- Genes, etc.
> >> >
> >> >
> >> >On Thu, Sep 17, 2015 at 2:52 PM, Wilson, Brian
> >> ><BW...@tuftsmedicalcenter.org> wrote:
> >> >
> >> >
> >> >> > Food for thought :)
> >> >
> >> >> >
> >> >> > The Big Data to Knowledge Coordination Center (BD2KCC) is
> >>announcing
> >> >> > a call for hackathon event proposals related to biomedical big
> >>data
> >> >> > science. The BD2KCC is part of the National Institutes of Health
> >> >> > (NIH)’s Big Data to Knowledge (BD2K) program, which is committed to
> >> >> > fostering consortium activities and collaborations among the
> >> >> > nationwide BD2K investigator teams. The current request for
> >> >> > applications aims to advance the mission of BD2K by inviting
> >> >> > proposals to host public hackathon events that will harness broad
> >> >> > expertise for the development and application of biomedical big
> >>data
> >> >> > software tools. Applications for the first round of funding are due
> >> >> > October 15th, 2015. More information about this opportunity can be
> >> >> > found at:
> >> >http://bd2kcc.org/files/hackathons.pdf
> >> ><http://bd2kcc.org/files/hackathons.pdf>.
> >> >>
> >> >>
> >> >>
> >> >
> >> >The information in this e-mail is intended only for the person to whom
> >>it
> >> >is addressed. If you believe this e-mail was sent to you in error and
> >>the
> >> >e-mail contains patient information, please contact the Tufts Medical
> >> >Center HIPAA Hotline at
> >> >(617) 636-4422 <tel:%28617%29%20636-4422>. If the e-mail was sent to
> >>you
> >> >in error but does not contain patient information, please contact the
> >> >sender and properly dispose of the e-mail.
> >> >
> >> >
> >> >
> >> >
> >> >
> >>
>
>
RE: [cancer-informatics] Fwd: BD2K Coordination Center Solicits
Hackathon Proposals
Posted by "Hari, Sekhar" <se...@cgi.com>.
Hello Chris -
This is impressive. Thanks. One scenario and a question - I am developing a tool that can do retrospective records review for adverse events in coded medical records. There are also statistical analysis reports it can produce in R for the observed adverse events/ triggers. Can I use Shangridocs to combine the statistical data produced by R in my scenario with biomedical research publications; e.g: is it possible for a hospital staff (say a trigger reviewer) or a Chief Medical Officer to ask a question in Shangridocs like - "What is the root cause trend for adverse events associated with the use of Warfarin in hospitalized patients"?. Because in my hospital records I see a number of cases where Vitamin K was used to bring down the INR value to <3. So I will like to know the trend across the globe regarding the root cause for INR>3.
Thanks,
Sekhar H.
________________________________________
From: Mattmann, Chris A (3980) [chris.a.mattmann@jpl.nasa.gov]
Sent: 24 September 2015 23:31
To: dev@ctakes.apache.org
Cc: user@ctakes.apache.org
Subject: Re: [cancer-informatics] Fwd: BD2K Coordination Center Solicits Hackathon Proposals
Hey Andy,
Sure, the clinical use case is to combine public and private data.
So take a company’s private clinical data, and research, and then
map it e.g.,to public research publications and connect the two.
So the tool I’m talking about is Shangridocs:
http://github.com/chrismattmann/shangridocs/
Would love to chat if people are interested in doing some funding
proposal related to this. I see a big need for it across multiple
domains.
Cheers,
Chris
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Chris Mattmann, Ph.D.
Chief Architect
Instrument Software and Science Data Systems Section (398)
NASA Jet Propulsion Laboratory Pasadena, CA 91109 USA
Office: 168-519, Mailstop: 168-527
Email: chris.a.mattmann@nasa.gov
WWW: http://sunset.usc.edu/~mattmann/
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Adjunct Associate Professor, Computer Science Department
University of Southern California, Los Angeles, CA 90089 USA
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
-----Original Message-----
From: andy mcmurry <mc...@gmail.com>
Reply-To: "dev@ctakes.apache.org" <de...@ctakes.apache.org>
Date: Saturday, September 19, 2015 at 8:44 PM
To: "dev@ctakes.apache.org" <de...@ctakes.apache.org>
Cc: "user@ctakes.apache.org" <us...@ctakes.apache.org>
Subject: Re: [cancer-informatics] Fwd: BD2K Coordination Center Solicits
Hackathon Proposals
>Chris: sounds interesting. could you share some of your clinical use
>cases ?
>
>On Sep 19, 2015 9:27 AM, "Mattmann, Chris A (3980)" <
>chris.a.mattmann@jpl.nasa.gov> wrote:
>>
>> Hey Folks,
>>
>> If anyone wants to discuss how JPL can contribute to a BD2K
>> proposal or if someone is already leading it, I would definitely
>> be interested in contributing. We have been combining Tika, cTAKES,
>> and other software (Spark, OODT) into a solution we call “Shangridocs”
>> which could be quite compelling here.
>>
>> Please feel free to contact me off-line and would love to discuss.
>>
>> Cheers,
>> Chris
>>
>> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
>> Chris Mattmann, Ph.D.
>> Chief Architect
>> Instrument Software and Science Data Systems Section (398)
>> NASA Jet Propulsion Laboratory Pasadena, CA 91109 USA
>> Office: 168-519, Mailstop: 168-527
>> Email: chris.a.mattmann@nasa.gov
>> WWW: http://sunset.usc.edu/~mattmann/
>> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
>> Adjunct Associate Professor, Computer Science Department
>> University of Southern California, Los Angeles, CA 90089 USA
>> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
>>
>>
>>
>>
>>
>> -----Original Message-----
>> From: andy mcmurry <mc...@gmail.com>
>> Reply-To: "user@ctakes.apache.org" <us...@ctakes.apache.org>
>> Date: Friday, September 18, 2015 at 4:24 PM
>> To: "dev@ctakes.apache.org" <de...@ctakes.apache.org>
>> Cc: "user@ctakes.apache.org" <us...@ctakes.apache.org>
>> Subject: Re: [cancer-informatics] Fwd: BD2K Coordination Center Solicits
>> Hackathon Proposals
>>
>> >+1 , I support the idea of cTAKES as an intermediate step for other
>> >annotation sources, data "mash up".
>> >Phenotypes -- Genes, etc.
>> >
>> >
>> >On Thu, Sep 17, 2015 at 2:52 PM, Wilson, Brian
>> ><BW...@tuftsmedicalcenter.org> wrote:
>> >
>> >
>> >> > Food for thought :)
>> >
>> >> >
>> >> > The Big Data to Knowledge Coordination Center (BD2KCC) is
>>announcing
>> >> > a call for hackathon event proposals related to biomedical big
>>data
>> >> > science. The BD2KCC is part of the National Institutes of Health
>> >> > (NIH)’s Big Data to Knowledge (BD2K) program, which is committed to
>> >> > fostering consortium activities and collaborations among the
>> >> > nationwide BD2K investigator teams. The current request for
>> >> > applications aims to advance the mission of BD2K by inviting
>> >> > proposals to host public hackathon events that will harness broad
>> >> > expertise for the development and application of biomedical big
>>data
>> >> > software tools. Applications for the first round of funding are due
>> >> > October 15th, 2015. More information about this opportunity can be
>> >> > found at:
>> >http://bd2kcc.org/files/hackathons.pdf
>> ><http://bd2kcc.org/files/hackathons.pdf>.
>> >>
>> >>
>> >>
>> >
>> >The information in this e-mail is intended only for the person to whom
>>it
>> >is addressed. If you believe this e-mail was sent to you in error and
>>the
>> >e-mail contains patient information, please contact the Tufts Medical
>> >Center HIPAA Hotline at
>> >(617) 636-4422 <tel:%28617%29%20636-4422>. If the e-mail was sent to
>>you
>> >in error but does not contain patient information, please contact the
>> >sender and properly dispose of the e-mail.
>> >
>> >
>> >
>> >
>> >
>>
RE: [cancer-informatics] Fwd: BD2K Coordination Center Solicits
Hackathon Proposals
Posted by "Hari, Sekhar" <se...@cgi.com>.
Hello Chris -
This is impressive. Thanks. One scenario and a question - I am developing a tool that can do retrospective records review for adverse events in coded medical records. There are also statistical analysis reports it can produce in R for the observed adverse events/ triggers. Can I use Shangridocs to combine the statistical data produced by R in my scenario with biomedical research publications; e.g: is it possible for a hospital staff (say a trigger reviewer) or a Chief Medical Officer to ask a question in Shangridocs like - "What is the root cause trend for adverse events associated with the use of Warfarin in hospitalized patients"?. Because in my hospital records I see a number of cases where Vitamin K was used to bring down the INR value to <3. So I will like to know the trend across the globe regarding the root cause for INR>3.
Thanks,
Sekhar H.
________________________________________
From: Mattmann, Chris A (3980) [chris.a.mattmann@jpl.nasa.gov]
Sent: 24 September 2015 23:31
To: dev@ctakes.apache.org
Cc: user@ctakes.apache.org
Subject: Re: [cancer-informatics] Fwd: BD2K Coordination Center Solicits Hackathon Proposals
Hey Andy,
Sure, the clinical use case is to combine public and private data.
So take a company’s private clinical data, and research, and then
map it e.g.,to public research publications and connect the two.
So the tool I’m talking about is Shangridocs:
http://github.com/chrismattmann/shangridocs/
Would love to chat if people are interested in doing some funding
proposal related to this. I see a big need for it across multiple
domains.
Cheers,
Chris
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Chris Mattmann, Ph.D.
Chief Architect
Instrument Software and Science Data Systems Section (398)
NASA Jet Propulsion Laboratory Pasadena, CA 91109 USA
Office: 168-519, Mailstop: 168-527
Email: chris.a.mattmann@nasa.gov
WWW: http://sunset.usc.edu/~mattmann/
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Adjunct Associate Professor, Computer Science Department
University of Southern California, Los Angeles, CA 90089 USA
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
-----Original Message-----
From: andy mcmurry <mc...@gmail.com>
Reply-To: "dev@ctakes.apache.org" <de...@ctakes.apache.org>
Date: Saturday, September 19, 2015 at 8:44 PM
To: "dev@ctakes.apache.org" <de...@ctakes.apache.org>
Cc: "user@ctakes.apache.org" <us...@ctakes.apache.org>
Subject: Re: [cancer-informatics] Fwd: BD2K Coordination Center Solicits
Hackathon Proposals
>Chris: sounds interesting. could you share some of your clinical use
>cases ?
>
>On Sep 19, 2015 9:27 AM, "Mattmann, Chris A (3980)" <
>chris.a.mattmann@jpl.nasa.gov> wrote:
>>
>> Hey Folks,
>>
>> If anyone wants to discuss how JPL can contribute to a BD2K
>> proposal or if someone is already leading it, I would definitely
>> be interested in contributing. We have been combining Tika, cTAKES,
>> and other software (Spark, OODT) into a solution we call “Shangridocs”
>> which could be quite compelling here.
>>
>> Please feel free to contact me off-line and would love to discuss.
>>
>> Cheers,
>> Chris
>>
>> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
>> Chris Mattmann, Ph.D.
>> Chief Architect
>> Instrument Software and Science Data Systems Section (398)
>> NASA Jet Propulsion Laboratory Pasadena, CA 91109 USA
>> Office: 168-519, Mailstop: 168-527
>> Email: chris.a.mattmann@nasa.gov
>> WWW: http://sunset.usc.edu/~mattmann/
>> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
>> Adjunct Associate Professor, Computer Science Department
>> University of Southern California, Los Angeles, CA 90089 USA
>> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
>>
>>
>>
>>
>>
>> -----Original Message-----
>> From: andy mcmurry <mc...@gmail.com>
>> Reply-To: "user@ctakes.apache.org" <us...@ctakes.apache.org>
>> Date: Friday, September 18, 2015 at 4:24 PM
>> To: "dev@ctakes.apache.org" <de...@ctakes.apache.org>
>> Cc: "user@ctakes.apache.org" <us...@ctakes.apache.org>
>> Subject: Re: [cancer-informatics] Fwd: BD2K Coordination Center Solicits
>> Hackathon Proposals
>>
>> >+1 , I support the idea of cTAKES as an intermediate step for other
>> >annotation sources, data "mash up".
>> >Phenotypes -- Genes, etc.
>> >
>> >
>> >On Thu, Sep 17, 2015 at 2:52 PM, Wilson, Brian
>> ><BW...@tuftsmedicalcenter.org> wrote:
>> >
>> >
>> >> > Food for thought :)
>> >
>> >> >
>> >> > The Big Data to Knowledge Coordination Center (BD2KCC) is
>>announcing
>> >> > a call for hackathon event proposals related to biomedical big
>>data
>> >> > science. The BD2KCC is part of the National Institutes of Health
>> >> > (NIH)’s Big Data to Knowledge (BD2K) program, which is committed to
>> >> > fostering consortium activities and collaborations among the
>> >> > nationwide BD2K investigator teams. The current request for
>> >> > applications aims to advance the mission of BD2K by inviting
>> >> > proposals to host public hackathon events that will harness broad
>> >> > expertise for the development and application of biomedical big
>>data
>> >> > software tools. Applications for the first round of funding are due
>> >> > October 15th, 2015. More information about this opportunity can be
>> >> > found at:
>> >http://bd2kcc.org/files/hackathons.pdf
>> ><http://bd2kcc.org/files/hackathons.pdf>.
>> >>
>> >>
>> >>
>> >
>> >The information in this e-mail is intended only for the person to whom
>>it
>> >is addressed. If you believe this e-mail was sent to you in error and
>>the
>> >e-mail contains patient information, please contact the Tufts Medical
>> >Center HIPAA Hotline at
>> >(617) 636-4422 <tel:%28617%29%20636-4422>. If the e-mail was sent to
>>you
>> >in error but does not contain patient information, please contact the
>> >sender and properly dispose of the e-mail.
>> >
>> >
>> >
>> >
>> >
>>
Re: [cancer-informatics] Fwd: BD2K Coordination Center Solicits
Hackathon Proposals
Posted by "Mattmann, Chris A (3980)" <ch...@jpl.nasa.gov>.
Hey Andy,
Sure, the clinical use case is to combine public and private data.
So take a company’s private clinical data, and research, and then
map it e.g.,to public research publications and connect the two.
So the tool I’m talking about is Shangridocs:
http://github.com/chrismattmann/shangridocs/
Would love to chat if people are interested in doing some funding
proposal related to this. I see a big need for it across multiple
domains.
Cheers,
Chris
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Chris Mattmann, Ph.D.
Chief Architect
Instrument Software and Science Data Systems Section (398)
NASA Jet Propulsion Laboratory Pasadena, CA 91109 USA
Office: 168-519, Mailstop: 168-527
Email: chris.a.mattmann@nasa.gov
WWW: http://sunset.usc.edu/~mattmann/
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Adjunct Associate Professor, Computer Science Department
University of Southern California, Los Angeles, CA 90089 USA
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
-----Original Message-----
From: andy mcmurry <mc...@gmail.com>
Reply-To: "dev@ctakes.apache.org" <de...@ctakes.apache.org>
Date: Saturday, September 19, 2015 at 8:44 PM
To: "dev@ctakes.apache.org" <de...@ctakes.apache.org>
Cc: "user@ctakes.apache.org" <us...@ctakes.apache.org>
Subject: Re: [cancer-informatics] Fwd: BD2K Coordination Center Solicits
Hackathon Proposals
>Chris: sounds interesting. could you share some of your clinical use
>cases ?
>
>On Sep 19, 2015 9:27 AM, "Mattmann, Chris A (3980)" <
>chris.a.mattmann@jpl.nasa.gov> wrote:
>>
>> Hey Folks,
>>
>> If anyone wants to discuss how JPL can contribute to a BD2K
>> proposal or if someone is already leading it, I would definitely
>> be interested in contributing. We have been combining Tika, cTAKES,
>> and other software (Spark, OODT) into a solution we call “Shangridocs”
>> which could be quite compelling here.
>>
>> Please feel free to contact me off-line and would love to discuss.
>>
>> Cheers,
>> Chris
>>
>> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
>> Chris Mattmann, Ph.D.
>> Chief Architect
>> Instrument Software and Science Data Systems Section (398)
>> NASA Jet Propulsion Laboratory Pasadena, CA 91109 USA
>> Office: 168-519, Mailstop: 168-527
>> Email: chris.a.mattmann@nasa.gov
>> WWW: http://sunset.usc.edu/~mattmann/
>> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
>> Adjunct Associate Professor, Computer Science Department
>> University of Southern California, Los Angeles, CA 90089 USA
>> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
>>
>>
>>
>>
>>
>> -----Original Message-----
>> From: andy mcmurry <mc...@gmail.com>
>> Reply-To: "user@ctakes.apache.org" <us...@ctakes.apache.org>
>> Date: Friday, September 18, 2015 at 4:24 PM
>> To: "dev@ctakes.apache.org" <de...@ctakes.apache.org>
>> Cc: "user@ctakes.apache.org" <us...@ctakes.apache.org>
>> Subject: Re: [cancer-informatics] Fwd: BD2K Coordination Center Solicits
>> Hackathon Proposals
>>
>> >+1 , I support the idea of cTAKES as an intermediate step for other
>> >annotation sources, data "mash up".
>> >Phenotypes -- Genes, etc.
>> >
>> >
>> >On Thu, Sep 17, 2015 at 2:52 PM, Wilson, Brian
>> ><BW...@tuftsmedicalcenter.org> wrote:
>> >
>> >
>> >> > Food for thought :)
>> >
>> >> >
>> >> > The Big Data to Knowledge Coordination Center (BD2KCC) is
>>announcing
>> >> > a call for hackathon event proposals related to biomedical big
>>data
>> >> > science. The BD2KCC is part of the National Institutes of Health
>> >> > (NIH)’s Big Data to Knowledge (BD2K) program, which is committed to
>> >> > fostering consortium activities and collaborations among the
>> >> > nationwide BD2K investigator teams. The current request for
>> >> > applications aims to advance the mission of BD2K by inviting
>> >> > proposals to host public hackathon events that will harness broad
>> >> > expertise for the development and application of biomedical big
>>data
>> >> > software tools. Applications for the first round of funding are due
>> >> > October 15th, 2015. More information about this opportunity can be
>> >> > found at:
>> >http://bd2kcc.org/files/hackathons.pdf
>> ><http://bd2kcc.org/files/hackathons.pdf>.
>> >>
>> >>
>> >>
>> >
>> >The information in this e-mail is intended only for the person to whom
>>it
>> >is addressed. If you believe this e-mail was sent to you in error and
>>the
>> >e-mail contains patient information, please contact the Tufts Medical
>> >Center HIPAA Hotline at
>> >(617) 636-4422 <tel:%28617%29%20636-4422>. If the e-mail was sent to
>>you
>> >in error but does not contain patient information, please contact the
>> >sender and properly dispose of the e-mail.
>> >
>> >
>> >
>> >
>> >
>>
Re: [cancer-informatics] Fwd: BD2K Coordination Center Solicits
Hackathon Proposals
Posted by "Mattmann, Chris A (3980)" <ch...@jpl.nasa.gov>.
Hey Andy,
Sure, the clinical use case is to combine public and private data.
So take a company’s private clinical data, and research, and then
map it e.g.,to public research publications and connect the two.
So the tool I’m talking about is Shangridocs:
http://github.com/chrismattmann/shangridocs/
Would love to chat if people are interested in doing some funding
proposal related to this. I see a big need for it across multiple
domains.
Cheers,
Chris
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Chris Mattmann, Ph.D.
Chief Architect
Instrument Software and Science Data Systems Section (398)
NASA Jet Propulsion Laboratory Pasadena, CA 91109 USA
Office: 168-519, Mailstop: 168-527
Email: chris.a.mattmann@nasa.gov
WWW: http://sunset.usc.edu/~mattmann/
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Adjunct Associate Professor, Computer Science Department
University of Southern California, Los Angeles, CA 90089 USA
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
-----Original Message-----
From: andy mcmurry <mc...@gmail.com>
Reply-To: "dev@ctakes.apache.org" <de...@ctakes.apache.org>
Date: Saturday, September 19, 2015 at 8:44 PM
To: "dev@ctakes.apache.org" <de...@ctakes.apache.org>
Cc: "user@ctakes.apache.org" <us...@ctakes.apache.org>
Subject: Re: [cancer-informatics] Fwd: BD2K Coordination Center Solicits
Hackathon Proposals
>Chris: sounds interesting. could you share some of your clinical use
>cases ?
>
>On Sep 19, 2015 9:27 AM, "Mattmann, Chris A (3980)" <
>chris.a.mattmann@jpl.nasa.gov> wrote:
>>
>> Hey Folks,
>>
>> If anyone wants to discuss how JPL can contribute to a BD2K
>> proposal or if someone is already leading it, I would definitely
>> be interested in contributing. We have been combining Tika, cTAKES,
>> and other software (Spark, OODT) into a solution we call “Shangridocs”
>> which could be quite compelling here.
>>
>> Please feel free to contact me off-line and would love to discuss.
>>
>> Cheers,
>> Chris
>>
>> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
>> Chris Mattmann, Ph.D.
>> Chief Architect
>> Instrument Software and Science Data Systems Section (398)
>> NASA Jet Propulsion Laboratory Pasadena, CA 91109 USA
>> Office: 168-519, Mailstop: 168-527
>> Email: chris.a.mattmann@nasa.gov
>> WWW: http://sunset.usc.edu/~mattmann/
>> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
>> Adjunct Associate Professor, Computer Science Department
>> University of Southern California, Los Angeles, CA 90089 USA
>> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
>>
>>
>>
>>
>>
>> -----Original Message-----
>> From: andy mcmurry <mc...@gmail.com>
>> Reply-To: "user@ctakes.apache.org" <us...@ctakes.apache.org>
>> Date: Friday, September 18, 2015 at 4:24 PM
>> To: "dev@ctakes.apache.org" <de...@ctakes.apache.org>
>> Cc: "user@ctakes.apache.org" <us...@ctakes.apache.org>
>> Subject: Re: [cancer-informatics] Fwd: BD2K Coordination Center Solicits
>> Hackathon Proposals
>>
>> >+1 , I support the idea of cTAKES as an intermediate step for other
>> >annotation sources, data "mash up".
>> >Phenotypes -- Genes, etc.
>> >
>> >
>> >On Thu, Sep 17, 2015 at 2:52 PM, Wilson, Brian
>> ><BW...@tuftsmedicalcenter.org> wrote:
>> >
>> >
>> >> > Food for thought :)
>> >
>> >> >
>> >> > The Big Data to Knowledge Coordination Center (BD2KCC) is
>>announcing
>> >> > a call for hackathon event proposals related to biomedical big
>>data
>> >> > science. The BD2KCC is part of the National Institutes of Health
>> >> > (NIH)’s Big Data to Knowledge (BD2K) program, which is committed to
>> >> > fostering consortium activities and collaborations among the
>> >> > nationwide BD2K investigator teams. The current request for
>> >> > applications aims to advance the mission of BD2K by inviting
>> >> > proposals to host public hackathon events that will harness broad
>> >> > expertise for the development and application of biomedical big
>>data
>> >> > software tools. Applications for the first round of funding are due
>> >> > October 15th, 2015. More information about this opportunity can be
>> >> > found at:
>> >http://bd2kcc.org/files/hackathons.pdf
>> ><http://bd2kcc.org/files/hackathons.pdf>.
>> >>
>> >>
>> >>
>> >
>> >The information in this e-mail is intended only for the person to whom
>>it
>> >is addressed. If you believe this e-mail was sent to you in error and
>>the
>> >e-mail contains patient information, please contact the Tufts Medical
>> >Center HIPAA Hotline at
>> >(617) 636-4422 <tel:%28617%29%20636-4422>. If the e-mail was sent to
>>you
>> >in error but does not contain patient information, please contact the
>> >sender and properly dispose of the e-mail.
>> >
>> >
>> >
>> >
>> >
>>
Re: [cancer-informatics] Fwd: BD2K Coordination Center Solicits
Hackathon Proposals
Posted by andy mcmurry <mc...@gmail.com>.
Chris: sounds interesting. could you share some of your clinical use cases ?
On Sep 19, 2015 9:27 AM, "Mattmann, Chris A (3980)" <
chris.a.mattmann@jpl.nasa.gov> wrote:
>
> Hey Folks,
>
> If anyone wants to discuss how JPL can contribute to a BD2K
> proposal or if someone is already leading it, I would definitely
> be interested in contributing. We have been combining Tika, cTAKES,
> and other software (Spark, OODT) into a solution we call “Shangridocs”
> which could be quite compelling here.
>
> Please feel free to contact me off-line and would love to discuss.
>
> Cheers,
> Chris
>
> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
> Chris Mattmann, Ph.D.
> Chief Architect
> Instrument Software and Science Data Systems Section (398)
> NASA Jet Propulsion Laboratory Pasadena, CA 91109 USA
> Office: 168-519, Mailstop: 168-527
> Email: chris.a.mattmann@nasa.gov
> WWW: http://sunset.usc.edu/~mattmann/
> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
> Adjunct Associate Professor, Computer Science Department
> University of Southern California, Los Angeles, CA 90089 USA
> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
>
>
>
>
>
> -----Original Message-----
> From: andy mcmurry <mc...@gmail.com>
> Reply-To: "user@ctakes.apache.org" <us...@ctakes.apache.org>
> Date: Friday, September 18, 2015 at 4:24 PM
> To: "dev@ctakes.apache.org" <de...@ctakes.apache.org>
> Cc: "user@ctakes.apache.org" <us...@ctakes.apache.org>
> Subject: Re: [cancer-informatics] Fwd: BD2K Coordination Center Solicits
> Hackathon Proposals
>
> >+1 , I support the idea of cTAKES as an intermediate step for other
> >annotation sources, data "mash up".
> >Phenotypes -- Genes, etc.
> >
> >
> >On Thu, Sep 17, 2015 at 2:52 PM, Wilson, Brian
> ><BW...@tuftsmedicalcenter.org> wrote:
> >
> >
> >> > Food for thought :)
> >
> >> >
> >> > The Big Data to Knowledge Coordination Center (BD2KCC) is announcing
> >> > a call for hackathon event proposals related to biomedical big data
> >> > science. The BD2KCC is part of the National Institutes of Health
> >> > (NIH)’s Big Data to Knowledge (BD2K) program, which is committed to
> >> > fostering consortium activities and collaborations among the
> >> > nationwide BD2K investigator teams. The current request for
> >> > applications aims to advance the mission of BD2K by inviting
> >> > proposals to host public hackathon events that will harness broad
> >> > expertise for the development and application of biomedical big data
> >> > software tools. Applications for the first round of funding are due
> >> > October 15th, 2015. More information about this opportunity can be
> >> > found at:
> >http://bd2kcc.org/files/hackathons.pdf
> ><http://bd2kcc.org/files/hackathons.pdf>.
> >>
> >>
> >>
> >
> >The information in this e-mail is intended only for the person to whom it
> >is addressed. If you believe this e-mail was sent to you in error and the
> >e-mail contains patient information, please contact the Tufts Medical
> >Center HIPAA Hotline at
> >(617) 636-4422 <tel:%28617%29%20636-4422>. If the e-mail was sent to you
> >in error but does not contain patient information, please contact the
> >sender and properly dispose of the e-mail.
> >
> >
> >
> >
> >
>
Re: [cancer-informatics] Fwd: BD2K Coordination Center Solicits
Hackathon Proposals
Posted by andy mcmurry <mc...@gmail.com>.
Chris: sounds interesting. could you share some of your clinical use cases ?
On Sep 19, 2015 9:27 AM, "Mattmann, Chris A (3980)" <
chris.a.mattmann@jpl.nasa.gov> wrote:
>
> Hey Folks,
>
> If anyone wants to discuss how JPL can contribute to a BD2K
> proposal or if someone is already leading it, I would definitely
> be interested in contributing. We have been combining Tika, cTAKES,
> and other software (Spark, OODT) into a solution we call “Shangridocs”
> which could be quite compelling here.
>
> Please feel free to contact me off-line and would love to discuss.
>
> Cheers,
> Chris
>
> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
> Chris Mattmann, Ph.D.
> Chief Architect
> Instrument Software and Science Data Systems Section (398)
> NASA Jet Propulsion Laboratory Pasadena, CA 91109 USA
> Office: 168-519, Mailstop: 168-527
> Email: chris.a.mattmann@nasa.gov
> WWW: http://sunset.usc.edu/~mattmann/
> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
> Adjunct Associate Professor, Computer Science Department
> University of Southern California, Los Angeles, CA 90089 USA
> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
>
>
>
>
>
> -----Original Message-----
> From: andy mcmurry <mc...@gmail.com>
> Reply-To: "user@ctakes.apache.org" <us...@ctakes.apache.org>
> Date: Friday, September 18, 2015 at 4:24 PM
> To: "dev@ctakes.apache.org" <de...@ctakes.apache.org>
> Cc: "user@ctakes.apache.org" <us...@ctakes.apache.org>
> Subject: Re: [cancer-informatics] Fwd: BD2K Coordination Center Solicits
> Hackathon Proposals
>
> >+1 , I support the idea of cTAKES as an intermediate step for other
> >annotation sources, data "mash up".
> >Phenotypes -- Genes, etc.
> >
> >
> >On Thu, Sep 17, 2015 at 2:52 PM, Wilson, Brian
> ><BW...@tuftsmedicalcenter.org> wrote:
> >
> >
> >> > Food for thought :)
> >
> >> >
> >> > The Big Data to Knowledge Coordination Center (BD2KCC) is announcing
> >> > a call for hackathon event proposals related to biomedical big data
> >> > science. The BD2KCC is part of the National Institutes of Health
> >> > (NIH)’s Big Data to Knowledge (BD2K) program, which is committed to
> >> > fostering consortium activities and collaborations among the
> >> > nationwide BD2K investigator teams. The current request for
> >> > applications aims to advance the mission of BD2K by inviting
> >> > proposals to host public hackathon events that will harness broad
> >> > expertise for the development and application of biomedical big data
> >> > software tools. Applications for the first round of funding are due
> >> > October 15th, 2015. More information about this opportunity can be
> >> > found at:
> >http://bd2kcc.org/files/hackathons.pdf
> ><http://bd2kcc.org/files/hackathons.pdf>.
> >>
> >>
> >>
> >
> >The information in this e-mail is intended only for the person to whom it
> >is addressed. If you believe this e-mail was sent to you in error and the
> >e-mail contains patient information, please contact the Tufts Medical
> >Center HIPAA Hotline at
> >(617) 636-4422 <tel:%28617%29%20636-4422>. If the e-mail was sent to you
> >in error but does not contain patient information, please contact the
> >sender and properly dispose of the e-mail.
> >
> >
> >
> >
> >
>
Re: [cancer-informatics] Fwd: BD2K Coordination Center Solicits
Hackathon Proposals
Posted by "Mattmann, Chris A (3980)" <ch...@jpl.nasa.gov>.
Hey Folks,
If anyone wants to discuss how JPL can contribute to a BD2K
proposal or if someone is already leading it, I would definitely
be interested in contributing. We have been combining Tika, cTAKES,
and other software (Spark, OODT) into a solution we call “Shangridocs”
which could be quite compelling here.
Please feel free to contact me off-line and would love to discuss.
Cheers,
Chris
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Chris Mattmann, Ph.D.
Chief Architect
Instrument Software and Science Data Systems Section (398)
NASA Jet Propulsion Laboratory Pasadena, CA 91109 USA
Office: 168-519, Mailstop: 168-527
Email: chris.a.mattmann@nasa.gov
WWW: http://sunset.usc.edu/~mattmann/
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Adjunct Associate Professor, Computer Science Department
University of Southern California, Los Angeles, CA 90089 USA
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
-----Original Message-----
From: andy mcmurry <mc...@gmail.com>
Reply-To: "user@ctakes.apache.org" <us...@ctakes.apache.org>
Date: Friday, September 18, 2015 at 4:24 PM
To: "dev@ctakes.apache.org" <de...@ctakes.apache.org>
Cc: "user@ctakes.apache.org" <us...@ctakes.apache.org>
Subject: Re: [cancer-informatics] Fwd: BD2K Coordination Center Solicits
Hackathon Proposals
>+1 , I support the idea of cTAKES as an intermediate step for other
>annotation sources, data "mash up".
>Phenotypes -- Genes, etc.
>
>
>On Thu, Sep 17, 2015 at 2:52 PM, Wilson, Brian
><BW...@tuftsmedicalcenter.org> wrote:
>
>
>> > Food for thought :)
>
>> >
>> > The Big Data to Knowledge Coordination Center (BD2KCC) is announcing
>> > a call for hackathon event proposals related to biomedical big data
>> > science. The BD2KCC is part of the National Institutes of Health
>> > (NIH)’s Big Data to Knowledge (BD2K) program, which is committed to
>> > fostering consortium activities and collaborations among the
>> > nationwide BD2K investigator teams. The current request for
>> > applications aims to advance the mission of BD2K by inviting
>> > proposals to host public hackathon events that will harness broad
>> > expertise for the development and application of biomedical big data
>> > software tools. Applications for the first round of funding are due
>> > October 15th, 2015. More information about this opportunity can be
>> > found at:
>http://bd2kcc.org/files/hackathons.pdf
><http://bd2kcc.org/files/hackathons.pdf>.
>>
>>
>>
>
>The information in this e-mail is intended only for the person to whom it
>is addressed. If you believe this e-mail was sent to you in error and the
>e-mail contains patient information, please contact the Tufts Medical
>Center HIPAA Hotline at
>(617) 636-4422 <tel:%28617%29%20636-4422>. If the e-mail was sent to you
>in error but does not contain patient information, please contact the
>sender and properly dispose of the e-mail.
>
>
>
>
>
Re: [cancer-informatics] Fwd: BD2K Coordination Center Solicits
Hackathon Proposals
Posted by "Mattmann, Chris A (3980)" <ch...@jpl.nasa.gov>.
Hey Folks,
If anyone wants to discuss how JPL can contribute to a BD2K
proposal or if someone is already leading it, I would definitely
be interested in contributing. We have been combining Tika, cTAKES,
and other software (Spark, OODT) into a solution we call “Shangridocs”
which could be quite compelling here.
Please feel free to contact me off-line and would love to discuss.
Cheers,
Chris
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Chris Mattmann, Ph.D.
Chief Architect
Instrument Software and Science Data Systems Section (398)
NASA Jet Propulsion Laboratory Pasadena, CA 91109 USA
Office: 168-519, Mailstop: 168-527
Email: chris.a.mattmann@nasa.gov
WWW: http://sunset.usc.edu/~mattmann/
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Adjunct Associate Professor, Computer Science Department
University of Southern California, Los Angeles, CA 90089 USA
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
-----Original Message-----
From: andy mcmurry <mc...@gmail.com>
Reply-To: "user@ctakes.apache.org" <us...@ctakes.apache.org>
Date: Friday, September 18, 2015 at 4:24 PM
To: "dev@ctakes.apache.org" <de...@ctakes.apache.org>
Cc: "user@ctakes.apache.org" <us...@ctakes.apache.org>
Subject: Re: [cancer-informatics] Fwd: BD2K Coordination Center Solicits
Hackathon Proposals
>+1 , I support the idea of cTAKES as an intermediate step for other
>annotation sources, data "mash up".
>Phenotypes -- Genes, etc.
>
>
>On Thu, Sep 17, 2015 at 2:52 PM, Wilson, Brian
><BW...@tuftsmedicalcenter.org> wrote:
>
>
>> > Food for thought :)
>
>> >
>> > The Big Data to Knowledge Coordination Center (BD2KCC) is announcing
>> > a call for hackathon event proposals related to biomedical big data
>> > science. The BD2KCC is part of the National Institutes of Health
>> > (NIH)’s Big Data to Knowledge (BD2K) program, which is committed to
>> > fostering consortium activities and collaborations among the
>> > nationwide BD2K investigator teams. The current request for
>> > applications aims to advance the mission of BD2K by inviting
>> > proposals to host public hackathon events that will harness broad
>> > expertise for the development and application of biomedical big data
>> > software tools. Applications for the first round of funding are due
>> > October 15th, 2015. More information about this opportunity can be
>> > found at:
>http://bd2kcc.org/files/hackathons.pdf
><http://bd2kcc.org/files/hackathons.pdf>.
>>
>>
>>
>
>The information in this e-mail is intended only for the person to whom it
>is addressed. If you believe this e-mail was sent to you in error and the
>e-mail contains patient information, please contact the Tufts Medical
>Center HIPAA Hotline at
>(617) 636-4422 <tel:%28617%29%20636-4422>. If the e-mail was sent to you
>in error but does not contain patient information, please contact the
>sender and properly dispose of the e-mail.
>
>
>
>
>
Re: [cancer-informatics] Fwd: BD2K Coordination Center Solicits
Hackathon Proposals
Posted by andy mcmurry <mc...@gmail.com>.
+1 , I support the idea of cTAKES as an intermediate step for other
annotation sources, data "mash up".
Phenotypes -- Genes, etc.
On Thu, Sep 17, 2015 at 2:52 PM, Wilson, Brian <
BWilson@tuftsmedicalcenter.org> wrote:
>
> > > Food for thought :)
>
> > >
> > > The Big Data to Knowledge Coordination Center (BD2KCC) is announcing
> > > a call for hackathon event proposals related to biomedical big data
> > > science. The BD2KCC is part of the National Institutes of Health
> > > (NIH)’s Big Data to Knowledge (BD2K) program, which is committed to
> > > fostering consortium activities and collaborations among the
> > > nationwide BD2K investigator teams. The current request for
> > > applications aims to advance the mission of BD2K by inviting
> > > proposals to host public hackathon events that will harness broad
> > > expertise for the development and application of biomedical big data
> > > software tools. Applications for the first round of funding are due
> > > October 15th, 2015. More information about this opportunity can be
> > > found at: http://bd2kcc.org/files/hackathons.pdf.
> >
> >
> >
>
> The information in this e-mail is intended only for the person to whom it
> is addressed. If you believe this e-mail was sent to you in error and the
> e-mail contains patient information, please contact the Tufts Medical
> Center HIPAA Hotline at (617) 636-4422. If the e-mail was sent to you in
> error but does not contain patient information, please contact the sender
> and properly dispose of the e-mail.
>
Re: [cancer-informatics] Fwd: BD2K Coordination Center Solicits
Hackathon Proposals
Posted by andy mcmurry <mc...@gmail.com>.
+1 , I support the idea of cTAKES as an intermediate step for other
annotation sources, data "mash up".
Phenotypes -- Genes, etc.
On Thu, Sep 17, 2015 at 2:52 PM, Wilson, Brian <
BWilson@tuftsmedicalcenter.org> wrote:
>
> > > Food for thought :)
>
> > >
> > > The Big Data to Knowledge Coordination Center (BD2KCC) is announcing
> > > a call for hackathon event proposals related to biomedical big data
> > > science. The BD2KCC is part of the National Institutes of Health
> > > (NIH)’s Big Data to Knowledge (BD2K) program, which is committed to
> > > fostering consortium activities and collaborations among the
> > > nationwide BD2K investigator teams. The current request for
> > > applications aims to advance the mission of BD2K by inviting
> > > proposals to host public hackathon events that will harness broad
> > > expertise for the development and application of biomedical big data
> > > software tools. Applications for the first round of funding are due
> > > October 15th, 2015. More information about this opportunity can be
> > > found at: http://bd2kcc.org/files/hackathons.pdf.
> >
> >
> >
>
> The information in this e-mail is intended only for the person to whom it
> is addressed. If you believe this e-mail was sent to you in error and the
> e-mail contains patient information, please contact the Tufts Medical
> Center HIPAA Hotline at (617) 636-4422. If the e-mail was sent to you in
> error but does not contain patient information, please contact the sender
> and properly dispose of the e-mail.
>