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Posted to user@ctakes.apache.org by Sreejith S <sr...@gmail.com> on 2015/03/25 11:28:58 UTC
Smoking Status Pipeline
Hi Team,
I executed SimulatedProdSmokingTAE.xml from Java and its working fine. I
can see the classified sentences and its smoking status through log
messages from ResolutionAnnotator class. Is there any possibility to get
the Sentences and smoking status from a class / object in ctakes ?
Please give me some pointers on this. I would be thankful.
Thank You,
*Sreejith*
Re: Smoking Status Pipeline
Posted by Sreejith S <sr...@gmail.com>.
Hi Britt,
Thank you for the pointers. I tried it by below code and it only gives the
last Smoker Class. and .getRecordID is null.
SimplePipeline.runPipeline(jcas, aed);
for(SmokingDocumentClassification smk : JCasUtil.select(jcas,
SmokingDocumentClassification.class)) {
System.out.println("Class : "+smk.getClassification()
+"\n Sentence ID : "+smk.getRecordID());
}
Is this the right way ?
Output
----------
26 Mar 2015 11:45:37 INFO SentenceAdjuster - started Sentence merging
process.
26 Mar 2015 11:45:37 INFO DictionaryLookupAnnotator - process(JCas)
26 Mar 2015 11:45:37 INFO ResolutionAnnotator -
***SmokerNameEntity***smoke 0
26 Mar 2015 11:45:37 INFO ResolutionAnnotator -
***SmokerNameEntity***cigarettes 0
26 Mar 2015 11:45:37 INFO ResolutionAnnotator - |She used to smoke about
half a pack a day, but for the last month she has been down to about 3-5
cigarettes a day.|CURRENT_SMOKER|0
26 Mar 2015 11:45:37 INFO ResolutionAnnotator - |She used to smoke about
half a pack a day, but for the last month she has been down to about 3-5
cigarettes a day.|CURRENT_SMOKER|0
26 Mar 2015 11:45:37 INFO SentenceDetector - Starting processing.
26 Mar 2015 11:45:37 INFO TokenizerAnnotatorPTB - process(JCas) in
org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
Class : CURRENT_SMOKER
Sentence ID :
Thank you,
On Wed, Mar 25, 2015 at 9:08 PM, britt fitch <
britt.fitch@wiredinformatics.com> wrote:
> Hi Sreejith,
>
> The Smoking Status module uses an extended type system. Search for these
> types:
>
> org.apache.ctakes.smokingstatus.type.SmokingDocumentClassification
>
> org.apache.ctakes.smokingstatus.type.UnknownSmokerNamedEntityAnnotation
>
> org.apache.ctakes.smokingstatus.type.NonSmokerNamedEntityAnnotation;
>
> org.apache.ctakes.smokingstatus.type.SmokerNamedEntityAnnotation;
>
>
> In partiuclar: SmokingDocumentClassification.getClassification().
>
> Cheers,
>
> Britt
>
>
> Britt Fitch
> Wired Informatics
> 265 Franklin St Ste 1702
> Boston, MA 02110
> http://wiredinformatics.com
> Britt.Fitch@wiredinformatics.com
>
> On Mar 25, 2015, at 6:28 AM, Sreejith S <sr...@gmail.com> wrote:
>
> Hi Team,
>
> I executed SimulatedProdSmokingTAE.xml from Java and its working fine. I
> can see the classified sentences and its smoking status through log
> messages from ResolutionAnnotator class. Is there any possibility to get
> the Sentences and smoking status from a class / object in ctakes ?
>
> Please give me some pointers on this. I would be thankful.
>
> Thank You,
>
> *Sreejith*
>
>
>
>
>
>
>
--
*Sreejith.S*
Re: Smoking Status Pipeline
Posted by britt fitch <br...@wiredinformatics.com>.
Hi Sreejith,
The Smoking Status module uses an extended type system. Search for these types:
org.apache.ctakes.smokingstatus.type.SmokingDocumentClassification
org.apache.ctakes.smokingstatus.type.UnknownSmokerNamedEntityAnnotation
org.apache.ctakes.smokingstatus.type.NonSmokerNamedEntityAnnotation;
org.apache.ctakes.smokingstatus.type.SmokerNamedEntityAnnotation;
In partiuclar: SmokingDocumentClassification.getClassification().
Cheers,
Britt
Britt Fitch
Wired Informatics
265 Franklin St Ste 1702
Boston, MA 02110
http://wiredinformatics.com
Britt.Fitch@wiredinformatics.com
> On Mar 25, 2015, at 6:28 AM, Sreejith S <sr...@gmail.com> wrote:
>
> Hi Team,
>
> I executed SimulatedProdSmokingTAE.xml from Java and its working fine. I can see the classified sentences and its smoking status through log messages from ResolutionAnnotator class. Is there any possibility to get the Sentences and smoking status from a class / object in ctakes ?
>
> Please give me some pointers on this. I would be thankful.
>
> Thank You,
>
> Sreejith
>
>
>
>
>
Re: Smoking Status Pipeline
Posted by britt fitch <br...@wiredinformatics.com>.
Hi Sreejith,
The Smoking Status module uses an extended type system. Search for these types:
org.apache.ctakes.smokingstatus.type.SmokingDocumentClassification
org.apache.ctakes.smokingstatus.type.UnknownSmokerNamedEntityAnnotation
org.apache.ctakes.smokingstatus.type.NonSmokerNamedEntityAnnotation;
org.apache.ctakes.smokingstatus.type.SmokerNamedEntityAnnotation;
In partiuclar: SmokingDocumentClassification.getClassification().
Cheers,
Britt
Britt Fitch
Wired Informatics
265 Franklin St Ste 1702
Boston, MA 02110
http://wiredinformatics.com
Britt.Fitch@wiredinformatics.com
> On Mar 25, 2015, at 6:28 AM, Sreejith S <sr...@gmail.com> wrote:
>
> Hi Team,
>
> I executed SimulatedProdSmokingTAE.xml from Java and its working fine. I can see the classified sentences and its smoking status through log messages from ResolutionAnnotator class. Is there any possibility to get the Sentences and smoking status from a class / object in ctakes ?
>
> Please give me some pointers on this. I would be thankful.
>
> Thank You,
>
> Sreejith
>
>
>
>
>