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Posted to commits@taverna.apache.org by st...@apache.org on 2015/02/17 21:49:30 UTC
[03/16] incubator-taverna-workbench-common-activities git commit:
Temporarily empty repository
http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench-common-activities/blob/b4725724/taverna-wsdl-activity-ui/src/test/resources/kegg.wsdl
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diff --git a/taverna-wsdl-activity-ui/src/test/resources/kegg.wsdl b/taverna-wsdl-activity-ui/src/test/resources/kegg.wsdl
deleted file mode 100644
index a62b707..0000000
--- a/taverna-wsdl-activity-ui/src/test/resources/kegg.wsdl
+++ /dev/null
@@ -1,1889 +0,0 @@
-<?xml version="1.0"?>
-<definitions
- name="KEGG_v6.1"
- xmlns:typens="SOAP/KEGG"
- xmlns:xsd="http://www.w3.org/2001/XMLSchema"
- xmlns:soap="http://schemas.xmlsoap.org/wsdl/soap/"
- xmlns:soapenc="http://schemas.xmlsoap.org/soap/encoding/"
- xmlns:wsdl="http://schemas.xmlsoap.org/wsdl/"
- xmlns="http://schemas.xmlsoap.org/wsdl/"
- targetNamespace="SOAP/KEGG">
-
- <types>
- <xsd:schema xmlns:xsd="http://www.w3.org/2001/XMLSchema" targetNamespace="SOAP/KEGG">
- <xsd:import namespace="http://schemas.xmlsoap.org/soap/encoding/"/>
- <xsd:import namespace="http://schemas.xmlsoap.org/wsdl/"/>
-<!-- common variable -->
- <xsd:complexType name="ArrayOfint">
- <xsd:complexContent>
- <xsd:restriction base="soapenc:Array">
-
- <xsd:attribute ref="soapenc:arrayType" wsdl:arrayType="xsd:int[]"/>
- </xsd:restriction>
- </xsd:complexContent>
- </xsd:complexType>
- <xsd:complexType name="ArrayOfstring">
- <xsd:complexContent>
- <xsd:restriction base="soapenc:Array">
- <xsd:attribute ref="soapenc:arrayType" wsdl:arrayType="xsd:string[]"/>
- </xsd:restriction>
-
- </xsd:complexContent>
- </xsd:complexType>
-<!-- SSDB -->
- <xsd:complexType name="SSDBRelation">
- <xsd:all>
- <xsd:element name="genes_id1" type="xsd:string"/>
- <xsd:element name="genes_id2" type="xsd:string"/>
- <xsd:element name="sw_score" type="xsd:int"/>
- <xsd:element name="bit_score" type="xsd:float"/>
-
- <xsd:element name="identity" type="xsd:float"/>
- <xsd:element name="overlap" type="xsd:int"/>
- <xsd:element name="start_position1" type="xsd:int"/>
- <xsd:element name="end_position1" type="xsd:int"/>
- <xsd:element name="start_position2" type="xsd:int"/>
- <xsd:element name="end_position2" type="xsd:int"/>
- <xsd:element name="best_flag_1to2" type="xsd:boolean"/>
- <xsd:element name="best_flag_2to1" type="xsd:boolean"/>
- <xsd:element name="definition1" type="xsd:string"/>
-
- <xsd:element name="definition2" type="xsd:string"/>
- <xsd:element name="length1" type="xsd:int"/>
- <xsd:element name="length2" type="xsd:int"/>
- </xsd:all>
- </xsd:complexType>
- <xsd:complexType name="ArrayOfSSDBRelation">
- <xsd:complexContent>
- <xsd:restriction base="soapenc:Array">
- <xsd:attribute ref="soapenc:arrayType" wsdl:arrayType="typens:SSDBRelation[]"/>
-
- </xsd:restriction>
- </xsd:complexContent>
- </xsd:complexType>
-<!-- MOTIF -->
- <xsd:complexType name="MotifResult">
- <xsd:all>
- <xsd:element name="motif_id" type="xsd:string"/>
- <xsd:element name="definition" type="xsd:string"/>
- <xsd:element name="genes_id" type="xsd:string"/>
-
- <xsd:element name="start_position" type="xsd:int"/>
- <xsd:element name="end_position" type="xsd:int"/>
- <xsd:element name="score" type="xsd:float"/>
- <xsd:element name="evalue" type="xsd:double"/>
- </xsd:all>
- </xsd:complexType>
- <xsd:complexType name="ArrayOfMotifResult">
- <xsd:complexContent>
- <xsd:restriction base="soapenc:Array">
-
- <xsd:attribute ref="soapenc:arrayType" wsdl:arrayType="typens:MotifResult[]"/>
- </xsd:restriction>
- </xsd:complexContent>
- </xsd:complexType>
-<!-- DEFINITION -->
- <xsd:complexType name="Definition">
- <xsd:all>
- <xsd:element name="entry_id" type="xsd:string"/>
- <xsd:element name="definition" type="xsd:string"/>
-
- </xsd:all>
- </xsd:complexType>
- <xsd:complexType name="ArrayOfDefinition">
- <xsd:complexContent>
- <xsd:restriction base="soapenc:Array">
- <xsd:attribute ref="soapenc:arrayType" wsdl:arrayType="typens:Definition[]"/>
- </xsd:restriction>
- </xsd:complexContent>
- </xsd:complexType>
-
-<!-- LinkDB -->
- <xsd:complexType name="LinkDBRelation">
- <xsd:all>
- <xsd:element name="entry_id1" type="xsd:string"/>
- <xsd:element name="entry_id2" type="xsd:string"/>
- <xsd:element name="type" type="xsd:string"/>
- <xsd:element name="path" type="xsd:string"/>
- </xsd:all>
- </xsd:complexType>
-
- <xsd:complexType name="ArrayOfLinkDBRelation">
- <xsd:complexContent>
- <xsd:restriction base="soapenc:Array">
- <xsd:attribute ref="soapenc:arrayType" wsdl:arrayType="typens:LinkDBRelation[]"/>
- </xsd:restriction>
- </xsd:complexContent>
- </xsd:complexType>
-<!-- Pathway -->
- <xsd:complexType name="PathwayElement">
-
- <xsd:all>
- <xsd:element name="element_id" type="xsd:int"/>
- <xsd:element name="type" type="xsd:string"/>
- <xsd:element name="names" type="typens:ArrayOfstring"/>
- <xsd:element name="components" type="typens:ArrayOfint"/>
- </xsd:all>
- </xsd:complexType>
- <xsd:complexType name="ArrayOfPathwayElement">
- <xsd:complexContent>
-
- <xsd:restriction base="soapenc:Array">
- <xsd:attribute ref="soapenc:arrayType" wsdl:arrayType="typens:PathwayElement[]"/>
- </xsd:restriction>
- </xsd:complexContent>
- </xsd:complexType>
- <xsd:complexType name="PathwayElementRelation">
- <xsd:all>
- <xsd:element name="element_id1" type="xsd:int"/>
- <xsd:element name="element_id2" type="xsd:int"/>
-
- <xsd:element name="type" type="xsd:string"/>
- <!--xsd:element name="name" type="xsd:string"/-->
- <xsd:element name="subtypes" type="typens:ArrayOfSubtype"/>
- </xsd:all>
- </xsd:complexType>
- <xsd:complexType name="ArrayOfPathwayElementRelation">
- <xsd:complexContent>
- <xsd:restriction base="soapenc:Array">
- <xsd:attribute ref="soapenc:arrayType" wsdl:arrayType="typens:PathwayElementRelation[]"/>
-
- </xsd:restriction>
- </xsd:complexContent>
- </xsd:complexType>
- <xsd:complexType name="Subtype">
- <xsd:all>
- <xsd:element name="relation" type="xsd:string"/>
- <xsd:element name="element_id" type="xsd:int"/>
- <xsd:element name="type" type="xsd:string"/>
- </xsd:all>
-
- </xsd:complexType>
- <xsd:complexType name="ArrayOfSubtype">
- <xsd:complexContent>
- <xsd:restriction base="soapenc:Array">
- <xsd:attribute ref="soapenc:arrayType" wsdl:arrayType="typens:Subtype[]"/>
- </xsd:restriction>
- </xsd:complexContent>
- </xsd:complexType>
-<!-- v6.0 -->
-
- <xsd:complexType name="StructureAlignment">
- <xsd:all>
- <xsd:element name="target_id" type="xsd:string"/>
- <xsd:element name="score" type="xsd:float"/>
- <xsd:element name="query_nodes" type="typens:ArrayOfint"/>
- <xsd:element name="target_nodes" type="typens:ArrayOfint"/>
- </xsd:all>
- </xsd:complexType>
- <xsd:complexType name="ArrayOfStructureAlignment">
-
- <xsd:complexContent>
- <xsd:restriction base="soapenc:Array">
- <xsd:attribute ref="soapenc:arrayType" wsdl:arrayType="typens:StructureAlignment[]"/>
- </xsd:restriction>
- </xsd:complexContent>
- </xsd:complexType>
-
- </xsd:schema>
- </types>
-
-<!-- KEGG information -->
-<!-- list_databases -->
- <message name="list_databasesRequest"/>
- <message name="list_databasesResponse">
- <part name="return" type="typens:ArrayOfDefinition"/>
- </message>
-<!-- list_organisms -->
- <message name="list_organismsRequest"/>
- <message name="list_organismsResponse">
- <part name="return" type="typens:ArrayOfDefinition"/>
-
- </message>
-<!-- list_pathways -->
- <message name="list_pathwaysRequest">
- <part name="org" type="xsd:string"/>
- </message>
- <message name="list_pathwaysResponse">
- <part name="return" type="typens:ArrayOfDefinition"/>
- </message>
-<!-- list_ko_classes -->
- <message name="list_ko_classesRequest">
-
- <part name="class_id" type="xsd:string"/>
- </message>
- <message name="list_ko_classesResponse">
- <part name="return" type="typens:ArrayOfDefinition"/>
- </message>
-<!-- DBGET -->
-<!-- binfo -->
- <message name="binfoRequest">
- <part name="db" type="xsd:string"/>
- </message>
-
- <message name="binfoResponse">
- <part name="return" type="xsd:string"/>
- </message>
-<!-- bget -->
- <message name="bgetRequest">
- <part name="string" type="xsd:string"/>
- </message>
- <message name="bgetResponse">
- <part name="return" type="xsd:string"/>
-
- </message>
-<!-- bfind -->
- <message name="bfindRequest">
- <part name="string" type="xsd:string"/>
- </message>
- <message name="bfindResponse">
- <part name="return" type="xsd:string"/>
- </message>
-<!-- btit -->
- <message name="btitRequest">
-
- <part name="string" type="xsd:string"/>
- </message>
- <message name="btitResponse">
- <part name="return" type="xsd:string"/>
- </message>
-<!-- bconv -->
- <message name="bconvRequest">
- <part name="string" type="xsd:string"/>
- </message>
-
- <message name="bconvResponse">
- <part name="return" type="xsd:string"/>
- </message>
-<!-- LinkDB -->
- <message name="get_linkdb_by_entryRequest">
- <part name="entry_id" type="xsd:string"/>
- <part name="db" type="xsd:string"/>
- <part name="offset" type="xsd:int"/>
- <part name="limit" type="xsd:int"/>
-
- </message>
- <message name="get_linkdb_by_entryResponse">
- <part name="return" type="typens:ArrayOfLinkDBRelation"/>
- </message>
-<!-- SSDB -->
-<!-- get_best_neighbors_by_gene -->
- <message name="get_best_neighbors_by_geneRequest">
- <part name="genes_id" type="xsd:string"/>
- <part name="offset" type="xsd:int"/>
- <part name="limit" type="xsd:int"/>
-
- </message>
- <message name="get_best_neighbors_by_geneResponse">
- <part name="return" type="typens:ArrayOfSSDBRelation"/>
- </message>
-<!-- get_best_best_neighbors_by_gene -->
- <message name="get_best_best_neighbors_by_geneRequest">
- <part name="genes_id" type="xsd:string"/>
- <part name="offset" type="xsd:int"/>
- <part name="limit" type="xsd:int"/>
-
- </message>
- <message name="get_best_best_neighbors_by_geneResponse">
- <part name="return" type="typens:ArrayOfSSDBRelation"/>
- </message>
-<!-- get_reverse_best_neighbors_by_gene -->
- <message name="get_reverse_best_neighbors_by_geneRequest">
- <part name="genes_id" type="xsd:string"/>
- <part name="offset" type="xsd:int"/>
- <part name="limit" type="xsd:int"/>
-
- </message>
- <message name="get_reverse_best_neighbors_by_geneResponse">
- <part name="return" type="typens:ArrayOfSSDBRelation"/>
- </message>
-<!-- get_paralogs_by_geneRequest -->
- <message name="get_paralogs_by_geneRequest">
- <part name="genes_id" type="xsd:string"/>
- <part name="offset" type="xsd:int"/>
- <part name="limit" type="xsd:int"/>
-
- </message>
- <message name="get_paralogs_by_geneResponse">
- <part name="return" type="typens:ArrayOfSSDBRelation"/>
- </message>
-<!-- MOTIF -->
-<!-- get_motifs_by_gene -->
- <message name="get_motifs_by_geneRequest">
- <part name="genes_id" type="xsd:string"/>
- <part name="db" type="xsd:string"/>
- </message>
-
- <message name="get_motifs_by_geneResponse">
- <part name="return" type="typens:ArrayOfMotifResult"/>
- </message>
-<!-- get_genes_by_motifs -->
- <message name="get_genes_by_motifsRequest">
- <part name="motif_id_list" type="typens:ArrayOfstring"/>
- <part name="offset" type="xsd:int"/>
- <part name="limit" type="xsd:int"/>
- </message>
-
- <message name="get_genes_by_motifsResponse">
- <part name="return" type="typens:ArrayOfDefinition"/>
- </message>
-<!-- KO,OC,PC -->
-<!-- get_ko_by_gene -->
- <message name="get_ko_by_geneRequest">
- <part name="genes_id" type="xsd:string"/>
- </message>
- <message name="get_ko_by_geneResponse">
- <part name="return" type="typens:ArrayOfstring"/>
-
- </message>
-<!-- get_ko_by_ko_class -->
- <message name="get_ko_by_ko_classRequest">
- <part name="class_id" type="xsd:string"/>
- </message>
- <message name="get_ko_by_ko_classResponse">
- <part name="return" type="typens:ArrayOfDefinition"/>
- </message>
-<!-- get_genes_by_ko -->
- <message name="get_genes_by_koRequest">
-
- <part name="ko_id" type="xsd:string"/>
- <part name="org" type="xsd:string"/>
- </message>
- <message name="get_genes_by_koResponse">
- <part name="return" type="typens:ArrayOfDefinition"/>
- </message>
-<!-- get_genes_by_ko_class -->
- <message name="get_genes_by_ko_classRequest">
- <part name="class_id" type="xsd:string"/>
-
- <part name="org" type="xsd:string"/>
- <part name="offset" type="xsd:int"/>
- <part name="limit" type="xsd:int"/>
- </message>
- <message name="get_genes_by_ko_classResponse">
- <part name="return" type="typens:ArrayOfDefinition"/>
- </message>
-<!-- get_oc_members_by_gene -->
-<!--
- <message name="get_oc_members_by_geneRequest">
- <part name="genes_id" type="xsd:string"/>
- <part name="offset" type="xsd:int"/>
- <part name="limit" type="xsd:int"/>
- </message>
- <message name="get_oc_members_by_geneResponse">
- <part name="return" type="typens:ArrayOfstring"/>
- </message>
--->
-<!-- get_pc_members_by_gene -->
-
-<!--
- <message name="get_pc_members_by_geneRequest">
- <part name="genes_id" type="xsd:string"/>
- <part name="offset" type="xsd:int"/>
- <part name="limit" type="xsd:int"/>
- </message>
- <message name="get_pc_members_by_geneResponse">
- <part name="return" type="typens:ArrayOfstring"/>
- </message>
--->
-<!-- PATHWAY -->
-<!-- Coloring pathways -->
-<!-- mark_pathway_by_objects -->
- <message name="get_elements_by_pathwayRequest">
- <part name="pathway_id" type="xsd:string"/>
- </message>
- <message name="get_elements_by_pathwayResponse">
- <part name="return" type="typens:ArrayOfPathwayElement"/>
- </message>
- <message name="get_element_relations_by_pathwayRequest">
-
- <part name="pathway_id" type="xsd:string"/>
- </message>
- <message name="get_element_relations_by_pathwayResponse">
- <part name="return" type="typens:ArrayOfPathwayElementRelation"/>
- </message>
- <message name="color_pathway_by_elementsRequest">
- <part name="pathway_id" type="xsd:string"/>
- <part name="element_list" type="typens:ArrayOfint"/>
- <part name="fg_color_list" type="typens:ArrayOfstring"/>
-
- <part name="bg_color_list" type="typens:ArrayOfstring"/>
- </message>
- <message name="color_pathway_by_elementsResponse">
- <part name="return" type="xsd:string"/>
- </message>
- <message name="get_html_of_colored_pathway_by_elementsRequest">
- <part name="pathway_id" type="xsd:string"/>
- <part name="element_list" type="typens:ArrayOfint"/>
- <part name="fg_color_list" type="typens:ArrayOfstring"/>
-
- <part name="bg_color_list" type="typens:ArrayOfstring"/>
- </message>
- <message name="get_html_of_colored_pathway_by_elementsResponse">
- <part name="return" type="xsd:string"/>
- </message>
-
- <message name="mark_pathway_by_objectsRequest">
- <part name="pathway_id" type="xsd:string"/>
- <part name="object_id_list" type="typens:ArrayOfstring"/>
-
- </message>
- <message name="mark_pathway_by_objectsResponse">
- <part name="return" type="xsd:string"/>
- </message>
-<!-- color_pathway_by_objects -->
- <message name="color_pathway_by_objectsRequest">
- <part name="pathway_id" type="xsd:string"/>
- <part name="object_id_list" type="typens:ArrayOfstring"/>
- <part name="fg_color_list" type="typens:ArrayOfstring"/>
-
- <part name="bg_color_list" type="typens:ArrayOfstring"/>
- </message>
- <message name="color_pathway_by_objectsResponse">
- <part name="return" type="xsd:string"/>
- </message>
-<!-- get_html_org_marked_pathway_by_objects -->
- <message name="get_html_of_marked_pathway_by_objectsRequest">
- <part name="pathway_id" type="xsd:string"/>
- <part name="object_id_list" type="typens:ArrayOfstring"/>
-
- </message>
- <message name="get_html_of_marked_pathway_by_objectsResponse">
- <part name="return" type="xsd:string"/>
- </message>
-<!-- get_html_of_colored_pathway_by_objects -->
- <message name="get_html_of_colored_pathway_by_objectsRequest">
- <part name="pathway_id" type="xsd:string"/>
- <part name="object_id_list" type="typens:ArrayOfstring"/>
- <part name="fg_color_list" type="typens:ArrayOfstring"/>
-
- <part name="bg_color_list" type="typens:ArrayOfstring"/>
- </message>
- <message name="get_html_of_colored_pathway_by_objectsResponse">
- <part name="return" type="xsd:string"/>
- </message>
-<!-- Objects on the pathway -->
-<!-- get_genes_by_pathway -->
- <message name="get_genes_by_pathwayRequest">
- <part name="pathway_id" type="xsd:string"/>
- </message>
-
- <message name="get_genes_by_pathwayResponse">
- <part name="return" type="typens:ArrayOfstring"/>
- </message>
-<!-- get_enzymes_by_pathway -->
- <message name="get_enzymes_by_pathwayRequest">
- <part name="pathway_id" type="xsd:string"/>
- </message>
- <message name="get_enzymes_by_pathwayResponse">
- <part name="return" type="typens:ArrayOfstring"/>
-
- </message>
-<!-- get_reactions_by_pathway -->
- <message name="get_reactions_by_pathwayRequest">
- <part name="pathway_id" type="xsd:string"/>
- </message>
- <message name="get_reactions_by_pathwayResponse">
- <part name="return" type="typens:ArrayOfstring"/>
- </message>
-<!-- Pathways by objects -->
-<!-- get_pathways_by_genes -->
-
- <message name="get_pathways_by_genesRequest">
- <part name="genes_id_list" type="typens:ArrayOfstring"/>
- </message>
- <message name="get_pathways_by_genesResponse">
- <part name="return" type="typens:ArrayOfstring"/>
- </message>
-<!-- get_pathways_by_enzymes -->
- <message name="get_pathways_by_enzymesRequest">
- <part name="enzyme_id_list" type="typens:ArrayOfstring"/>
-
- </message>
- <message name="get_pathways_by_enzymesResponse">
- <part name="return" type="typens:ArrayOfstring"/>
- </message>
-<!-- get_pathways_by_reactions -->
- <message name="get_pathways_by_reactionsRequest">
- <part name="reaction_id_list" type="typens:ArrayOfstring"/>
- </message>
- <message name="get_pathways_by_reactionsResponse">
-
- <part name="return" type="typens:ArrayOfstring"/>
- </message>
-<!-- Mutual transformation of objects -->
-<!-- Relation among pathways -->
-<!-- get_linked_pathways -->
- <message name="get_linked_pathwaysRequest">
- <part name="pathway_id" type="xsd:string"/>
- </message>
- <message name="get_linked_pathwaysResponse">
- <part name="return" type="typens:ArrayOfstring"/>
-
- </message>
-<!-- Relation among genes and enzymes -->
-<!-- get_genes_by_enzyme -->
- <message name="get_genes_by_enzymeRequest">
- <part name="enzyme_id" type="xsd:string"/>
- <part name="org" type="xsd:string"/>
- </message>
- <message name="get_genes_by_enzymeResponse">
- <part name="return" type="typens:ArrayOfstring"/>
- </message>
-
-<!-- get_enzymes_by_gene -->
- <message name="get_enzymes_by_geneRequest">
- <part name="genes_id" type="xsd:string"/>
- </message>
- <message name="get_enzymes_by_geneResponse">
- <part name="return" type="typens:ArrayOfstring"/>
- </message>
-<!-- Relation among enzymes, compounds and reactions -->
-<!-- get_enzymes_by_reaction -->
- <message name="get_enzymes_by_reactionRequest">
-
- <part name="reaction_id" type="xsd:string"/>
- </message>
- <message name="get_enzymes_by_reactionResponse">
- <part name="return" type="typens:ArrayOfstring"/>
- </message>
-<!-- get_reactions_by_enzyme -->
- <message name="get_reactions_by_enzymeRequest">
- <part name="enzyme_id" type="xsd:string"/>
- </message>
-
- <message name="get_reactions_by_enzymeResponse">
- <part name="return" type="typens:ArrayOfstring"/>
- </message>
-<!-- GENES -->
-<!-- get_genes_by_organism -->
- <message name="get_genes_by_organismRequest">
- <part name="org" type="xsd:string"/>
- <part name="offset" type="xsd:int"/>
- <part name="limit" type="xsd:int"/>
- </message>
-
- <message name="get_genes_by_organismResponse">
- <part name="return" type="typens:ArrayOfstring"/>
- </message>
-<!-- GENOME -->
-<!-- get_number_of_genes_by_organism -->
- <message name="get_number_of_genes_by_organismRequest">
- <part name="abbr" type="xsd:string"/>
- </message>
- <message name="get_number_of_genes_by_organismResponse">
- <part name="return" type="xsd:int"/>
-
- </message>
-<!-- LIGAND -->
- <message name="get_reactions_by_glycanRequest">
- <part name="glycan_id" type="xsd:string"/>
- </message>
- <message name="get_reactions_by_glycanResponse">
- <part name="return" type="typens:ArrayOfstring"/>
- </message>
- <message name="get_reactions_by_compoundRequest">
-
- <part name="compound_id" type="xsd:string"/>
- </message>
- <message name="get_reactions_by_compoundResponse">
- <part name="return" type="typens:ArrayOfstring"/>
- </message>
- <message name="get_enzymes_by_glycanRequest">
- <part name="glycan_id" type="xsd:string"/>
- </message>
- <message name="get_enzymes_by_glycanResponse">
-
- <part name="return" type="typens:ArrayOfstring"/>
- </message>
- <message name="get_enzymes_by_compoundRequest">
- <part name="compound_id" type="xsd:string"/>
- </message>
- <message name="get_enzymes_by_compoundResponse">
- <part name="return" type="typens:ArrayOfstring"/>
- </message>
- <message name="get_pathways_by_compoundsRequest">
-
- <part name="compound_id_list" type="typens:ArrayOfstring"/>
- </message>
- <message name="get_pathways_by_compoundsResponse">
- <part name="return" type="typens:ArrayOfstring"/>
- </message>
- <message name="get_pathways_by_glycansRequest">
- <part name="glycan_id_list" type="typens:ArrayOfstring"/>
- </message>
- <message name="get_pathways_by_glycansResponse">
-
- <part name="return" type="typens:ArrayOfstring"/>
- </message>
- <message name="get_compounds_by_pathwayRequest">
- <part name="pathway_id" type="xsd:string"/>
- </message>
- <message name="get_compounds_by_pathwayResponse">
- <part name="return" type="typens:ArrayOfstring"/>
- </message>
- <message name="get_compounds_by_enzymeRequest">
-
- <part name="enzyme_id" type="xsd:string"/>
- </message>
- <message name="get_compounds_by_enzymeResponse">
- <part name="return" type="typens:ArrayOfstring"/>
- </message>
- <message name="get_glycans_by_enzymeRequest">
- <part name="enzyme_id" type="xsd:string"/>
- </message>
- <message name="get_glycans_by_enzymeResponse">
-
- <part name="return" type="typens:ArrayOfstring"/>
- </message>
- <message name="get_glycans_by_pathwayRequest">
- <part name="pathway_id" type="xsd:string"/>
- </message>
- <message name="get_glycans_by_pathwayResponse">
- <part name="return" type="typens:ArrayOfstring"/>
- </message>
- <message name="get_compounds_by_reactionRequest">
-
- <part name="reaction_id" type="xsd:string"/>
- </message>
- <message name="get_compounds_by_reactionResponse">
- <part name="return" type="typens:ArrayOfstring"/>
- </message>
- <message name="get_glycans_by_reactionRequest">
- <part name="reaction_id" type="xsd:string"/>
- </message>
- <message name="get_glycans_by_reactionResponse">
-
- <part name="return" type="typens:ArrayOfstring"/>
- </message>
- <message name="convert_mol_to_kcfRequest">
- <part name="mol_text" type="xsd:string"/>
- </message>
- <message name="convert_mol_to_kcfResponse">
- <part name="return" type="xsd:string"/>
- </message>
- <message name="get_kos_by_pathwayRequest">
-
- <part name="pathway_id" type="xsd:string"/>
- </message>
- <message name="get_kos_by_pathwayResponse">
- <part name="return" type="typens:ArrayOfstring"/>
- </message>
- <message name="get_pathways_by_kosRequest">
- <part name="ko_id_list" type="typens:ArrayOfstring"/>
- <part name="org" type="xsd:string"/>
- </message>
-
- <message name="get_pathways_by_kosResponse">
- <part name="return" type="typens:ArrayOfstring"/>
- </message>
-
-<!-- v6.0 -->
- <message name="search_compounds_by_nameRequest">
- <part name="name" type="xsd:string"/>
- </message>
- <message name="search_compounds_by_nameResponse">
- <part name="return" type="typens:ArrayOfstring"/>
-
- </message>
-
- <message name="search_glycans_by_nameRequest">
- <part name="name" type="xsd:string"/>
- </message>
- <message name="search_glycans_by_nameResponse">
- <part name="return" type="typens:ArrayOfstring"/>
- </message>
-
- <message name="search_compounds_by_compositionRequest">
-
- <part name="composition" type="xsd:string"/>
- </message>
- <message name="search_compounds_by_compositionResponse">
- <part name="return" type="typens:ArrayOfstring"/>
- </message>
-
- <message name="search_compounds_by_massRequest">
- <part name="mass" type="xsd:float"/>
- <part name="range" type="xsd:float"/>
-
- </message>
- <message name="search_compounds_by_massResponse">
- <part name="return" type="typens:ArrayOfstring"/>
- </message>
-
- <message name="search_glycans_by_massRequest">
- <part name="mass" type="xsd:float"/>
- <part name="range" type="xsd:float"/>
- </message>
-
- <message name="search_glycans_by_massResponse">
- <part name="return" type="typens:ArrayOfstring"/>
- </message>
-
- <message name="search_glycans_by_compositionRequest">
- <part name="composition" type="xsd:string"/>
- </message>
- <message name="search_glycans_by_compositionResponse">
- <part name="return" type="typens:ArrayOfstring"/>
-
- </message>
-
- <message name="search_compounds_by_subcompRequest">
- <part name="mol" type="xsd:string"/>
- <part name="offset" type="xsd:int"/>
- <part name="limit" type="xsd:int"/>
- </message>
- <message name="search_compounds_by_subcompResponse">
- <part name="return" type="typens:ArrayOfStructureAlignment"/>
-
- </message>
-
- <message name="search_glycans_by_kcamRequest">
- <part name="kcf" type="xsd:string"/>
- <part name="program" type="xsd:string"/>
- <part name="option" type="xsd:string"/>
- <part name="offset" type="xsd:int"/>
- <part name="limit" type="xsd:int"/>
- </message>
-
- <message name="search_glycans_by_kcamResponse">
- <part name="return" type="typens:ArrayOfStructureAlignment"/>
- </message>
-
- <message name="get_linkdb_between_databasesRequest">
- <part name="from_db" type="xsd:string"/>
- <part name="to_db" type="xsd:string"/>
- <part name="offset" type="xsd:int"/>
- <part name="limit" type="xsd:int"/>
-
- </message>
- <message name="get_linkdb_between_databasesResponse">
- <part name="return" type="typens:ArrayOfLinkDBRelation"/>
- </message>
-
-<!-- v6.1 -->
- <message name="search_drugs_by_nameRequest">
- <part name="name" type="xsd:string"/>
- </message>
- <message name="search_drugs_by_nameResponse">
-
- <part name="return" type="typens:ArrayOfstring"/>
- </message>
-
- <message name="search_drugs_by_compositionRequest">
- <part name="composition" type="xsd:string"/>
- </message>
- <message name="search_drugs_by_compositionResponse">
- <part name="return" type="typens:ArrayOfstring"/>
- </message>
-
- <message name="search_drugs_by_massRequest">
- <part name="mass" type="xsd:float"/>
- <part name="range" type="xsd:float"/>
- </message>
- <message name="search_drugs_by_massResponse">
- <part name="return" type="typens:ArrayOfstring"/>
- </message>
-
- <message name="search_drugs_by_subcompRequest">
-
- <part name="mol" type="xsd:string"/>
- <part name="offset" type="xsd:int"/>
- <part name="limit" type="xsd:int"/>
- </message>
- <message name="search_drugs_by_subcompResponse">
- <part name="return" type="typens:ArrayOfStructureAlignment"/>
- </message>
-
- <portType name="KEGGPortType">
-
-<!-- KEGG information -->
- <operation name="list_databases">
- <input message="typens:list_databasesRequest"/>
- <output message="typens:list_databasesResponse"/>
- </operation>
- <operation name="list_organisms">
- <input message="typens:list_organismsRequest"/>
- <output message="typens:list_organismsResponse"/>
- </operation>
-
- <operation name="list_pathways">
- <input message="typens:list_pathwaysRequest"/>
- <output message="typens:list_pathwaysResponse"/>
- </operation>
- <operation name="list_ko_classes">
- <input message="typens:list_ko_classesRequest"/>
- <output message="typens:list_ko_classesResponse"/>
- </operation>
-<!-- DBGET -->
-
- <operation name="binfo">
- <input message="typens:binfoRequest"/>
- <output message="typens:binfoResponse"/>
- </operation>
- <operation name="bget">
- <input message="typens:bgetRequest"/>
- <output message="typens:bgetResponse"/>
- </operation>
- <operation name="bfind">
-
- <input message="typens:bfindRequest"/>
- <output message="typens:bfindResponse"/>
- </operation>
- <operation name="btit">
- <input message="typens:btitRequest"/>
- <output message="typens:btitResponse"/>
- </operation>
- <operation name="bconv">
- <input message="typens:bconvRequest"/>
-
- <output message="typens:bconvResponse"/>
- </operation>
-<!-- LinkDB -->
- <operation name="get_linkdb_by_entry">
- <input message="typens:get_linkdb_by_entryRequest"/>
- <output message="typens:get_linkdb_by_entryResponse"/>
- </operation>
-<!-- SSDB -->
- <operation name="get_best_neighbors_by_gene">
- <input message="typens:get_best_neighbors_by_geneRequest"/>
-
- <output message="typens:get_best_neighbors_by_geneResponse"/>
- </operation>
- <operation name="get_best_best_neighbors_by_gene">
- <input message="typens:get_best_best_neighbors_by_geneRequest"/>
- <output message="typens:get_best_best_neighbors_by_geneResponse"/>
- </operation>
- <operation name="get_reverse_best_neighbors_by_gene">
- <input message="typens:get_reverse_best_neighbors_by_geneRequest"/>
- <output message="typens:get_reverse_best_neighbors_by_geneResponse"/>
-
- </operation>
- <operation name="get_paralogs_by_gene">
- <input message="typens:get_paralogs_by_geneRequest"/>
- <output message="typens:get_paralogs_by_geneResponse"/>
- </operation>
-<!-- MOTIF -->
- <operation name="get_motifs_by_gene">
- <input message="typens:get_motifs_by_geneRequest"/>
- <output message="typens:get_motifs_by_geneResponse"/>
-
- </operation>
- <operation name="get_genes_by_motifs">
- <input message="typens:get_genes_by_motifsRequest"/>
- <output message="typens:get_genes_by_motifsResponse"/>
- </operation>
-<!-- KO,OC,PC -->
- <operation name="get_ko_by_gene">
- <input message="typens:get_ko_by_geneRequest"/>
- <output message="typens:get_ko_by_geneResponse"/>
-
- </operation>
- <operation name="get_ko_by_ko_class">
- <input message="typens:get_ko_by_ko_classRequest"/>
- <output message="typens:get_ko_by_ko_classResponse"/>
- </operation>
- <operation name="get_genes_by_ko">
- <input message="typens:get_genes_by_koRequest"/>
- <output message="typens:get_genes_by_koResponse"/>
- </operation>
-
- <operation name="get_genes_by_ko_class">
- <input message="typens:get_genes_by_ko_classRequest"/>
- <output message="typens:get_genes_by_ko_classResponse"/>
- </operation>
-<!--
- <operation name="get_oc_members_by_gene">
- <input message="typens:get_oc_members_by_geneRequest"/>
- <output message="typens:get_oc_members_by_geneResponse"/>
- </operation>
--->
-<!--
- <operation name="get_pc_members_by_gene">
- <input message="typens:get_pc_members_by_geneRequest"/>
- <output message="typens:get_pc_members_by_geneResponse"/>
- </operation>
--->
-<!-- PATHWAY -->
-<!-- Coloring pathways -->
- <operation name="get_elements_by_pathway">
- <input message="typens:get_elements_by_pathwayRequest"/>
- <output message="typens:get_elements_by_pathwayResponse"/>
-
- </operation>
- <operation name="get_element_relations_by_pathway">
- <input message="typens:get_element_relations_by_pathwayRequest"/>
- <output message="typens:get_element_relations_by_pathwayResponse"/>
- </operation>
- <operation name="color_pathway_by_elements">
- <input message="typens:color_pathway_by_elementsRequest"/>
- <output message="typens:color_pathway_by_elementsResponse"/>
- </operation>
-
- <operation name="get_html_of_colored_pathway_by_elements">
- <input message="typens:get_html_of_colored_pathway_by_elementsRequest"/>
- <output message="typens:get_html_of_colored_pathway_by_elementsResponse"/>
- </operation>
-
- <operation name="mark_pathway_by_objects">
- <input message="typens:mark_pathway_by_objectsRequest"/>
- <output message="typens:mark_pathway_by_objectsResponse"/>
- </operation>
-
- <operation name="color_pathway_by_objects">
- <input message="typens:color_pathway_by_objectsRequest"/>
- <output message="typens:color_pathway_by_objectsResponse"/>
- </operation>
- <operation name="get_html_of_marked_pathway_by_objects">
- <input message="typens:get_html_of_marked_pathway_by_objectsRequest"/>
- <output message="typens:get_html_of_marked_pathway_by_objectsResponse"/>
- </operation>
- <operation name="get_html_of_colored_pathway_by_objects">
-
- <input message="typens:get_html_of_colored_pathway_by_objectsRequest"/>
- <output message="typens:get_html_of_colored_pathway_by_objectsResponse"/>
- </operation>
-<!-- Objects on the pathway -->
- <operation name="get_genes_by_pathway">
- <input message="typens:get_genes_by_pathwayRequest"/>
- <output message="typens:get_genes_by_pathwayResponse"/>
- </operation>
- <operation name="get_enzymes_by_pathway">
-
- <input message="typens:get_enzymes_by_pathwayRequest"/>
- <output message="typens:get_enzymes_by_pathwayResponse"/>
- </operation>
- <operation name="get_reactions_by_pathway">
- <input message="typens:get_reactions_by_pathwayRequest"/>
- <output message="typens:get_reactions_by_pathwayResponse"/>
- </operation>
-<!-- Pathways by objects -->
- <operation name="get_pathways_by_genes">
-
- <input message="typens:get_pathways_by_genesRequest"/>
- <output message="typens:get_pathways_by_genesResponse"/>
- </operation>
- <operation name="get_pathways_by_enzymes">
- <input message="typens:get_pathways_by_enzymesRequest"/>
- <output message="typens:get_pathways_by_enzymesResponse"/>
- </operation>
- <operation name="get_pathways_by_reactions">
- <input message="typens:get_pathways_by_reactionsRequest"/>
-
- <output message="typens:get_pathways_by_reactionsResponse"/>
- </operation>
-<!-- Mutual transformation of objects -->
-<!-- Realtion among pathways -->
- <operation name="get_linked_pathways">
- <input message="typens:get_linked_pathwaysRequest"/>
- <output message="typens:get_linked_pathwaysResponse"/>
- </operation>
-<!-- Realtion among genes and enzymes -->
- <operation name="get_genes_by_enzyme">
-
- <input message="typens:get_genes_by_enzymeRequest"/>
- <output message="typens:get_genes_by_enzymeResponse"/>
- </operation>
- <operation name="get_enzymes_by_gene">
- <input message="typens:get_enzymes_by_geneRequest"/>
- <output message="typens:get_enzymes_by_geneResponse"/>
- </operation>
-<!-- Realtion among enzymes, compounds and reactions -->
- <operation name="get_enzymes_by_reaction">
-
- <input message="typens:get_enzymes_by_reactionRequest"/>
- <output message="typens:get_enzymes_by_reactionResponse"/>
- </operation>
- <operation name="get_reactions_by_enzyme">
- <input message="typens:get_reactions_by_enzymeRequest"/>
- <output message="typens:get_reactions_by_enzymeResponse"/>
- </operation>
-<!-- GENES -->
- <operation name="get_genes_by_organism">
-
- <input message="typens:get_genes_by_organismRequest"/>
- <output message="typens:get_genes_by_organismResponse"/>
- </operation>
-<!-- GENOME -->
- <operation name="get_number_of_genes_by_organism">
- <input message="typens:get_number_of_genes_by_organismRequest"/>
- <output message="typens:get_number_of_genes_by_organismResponse"/>
- </operation>
-<!-- LIGAND -->
- <operation name="get_reactions_by_glycan">
-
- <input message="typens:get_reactions_by_glycanRequest"/>
- <output message="typens:get_reactions_by_glycanResponse"/>
- </operation>
- <operation name="get_reactions_by_compound">
- <input message="typens:get_reactions_by_compoundRequest"/>
- <output message="typens:get_reactions_by_compoundResponse"/>
- </operation>
- <operation name="get_enzymes_by_glycan">
- <input message="typens:get_enzymes_by_glycanRequest"/>
-
- <output message="typens:get_enzymes_by_glycanResponse"/>
- </operation>
- <operation name="get_enzymes_by_compound">
- <input message="typens:get_enzymes_by_compoundRequest"/>
- <output message="typens:get_enzymes_by_compoundResponse"/>
- </operation>
- <operation name="get_pathways_by_compounds">
- <input message="typens:get_pathways_by_compoundsRequest"/>
- <output message="typens:get_pathways_by_compoundsResponse"/>
-
- </operation>
- <operation name="get_pathways_by_glycans">
- <input message="typens:get_pathways_by_glycansRequest"/>
- <output message="typens:get_pathways_by_glycansResponse"/>
- </operation>
- <operation name="get_compounds_by_pathway">
- <input message="typens:get_compounds_by_pathwayRequest"/>
- <output message="typens:get_compounds_by_pathwayResponse"/>
- </operation>
-
- <operation name="get_glycans_by_pathway">
- <input message="typens:get_glycans_by_pathwayRequest"/>
- <output message="typens:get_glycans_by_pathwayResponse"/>
- </operation>
- <operation name="get_compounds_by_reaction">
- <input message="typens:get_compounds_by_reactionRequest"/>
- <output message="typens:get_compounds_by_reactionResponse"/>
- </operation>
- <operation name="get_glycans_by_reaction">
-
- <input message="typens:get_glycans_by_reactionRequest"/>
- <output message="typens:get_glycans_by_reactionResponse"/>
- </operation>
- <operation name="get_compounds_by_enzyme">
- <input message="typens:get_compounds_by_enzymeRequest"/>
- <output message="typens:get_compounds_by_enzymeResponse"/>
- </operation>
- <operation name="get_glycans_by_enzyme">
- <input message="typens:get_glycans_by_enzymeRequest"/>
-
- <output message="typens:get_glycans_by_enzymeResponse"/>
- </operation>
- <operation name="convert_mol_to_kcf">
- <input message="typens:convert_mol_to_kcfRequest"/>
- <output message="typens:convert_mol_to_kcfResponse"/>
- </operation>
- <operation name="get_kos_by_pathway">
- <input message="typens:get_kos_by_pathwayRequest"/>
- <output message="typens:get_kos_by_pathwayResponse"/>
-
- </operation>
- <operation name="get_pathways_by_kos">
- <input message="typens:get_pathways_by_kosRequest"/>
- <output message="typens:get_pathways_by_kosResponse"/>
- </operation>
-<!-- v6.0 -->
- <operation name="search_compounds_by_name">
- <input message="typens:search_compounds_by_nameRequest"/>
- <output message="typens:search_compounds_by_nameResponse"/>
-
- </operation>
- <operation name="search_glycans_by_name">
- <input message="typens:search_glycans_by_nameRequest"/>
- <output message="typens:search_glycans_by_nameResponse"/>
- </operation>
- <operation name="search_compounds_by_composition">
- <input message="typens:search_compounds_by_compositionRequest"/>
- <output message="typens:search_compounds_by_compositionResponse"/>
- </operation>
-
- <operation name="search_compounds_by_mass">
- <input message="typens:search_compounds_by_massRequest"/>
- <output message="typens:search_compounds_by_massResponse"/>
- </operation>
- <operation name="search_glycans_by_mass">
- <input message="typens:search_glycans_by_massRequest"/>
- <output message="typens:search_glycans_by_massResponse"/>
- </operation>
- <operation name="search_glycans_by_composition">
-
- <input message="typens:search_glycans_by_compositionRequest"/>
- <output message="typens:search_glycans_by_compositionResponse"/>
- </operation>
- <operation name="search_compounds_by_subcomp">
- <input message="typens:search_compounds_by_subcompRequest"/>
- <output message="typens:search_compounds_by_subcompResponse"/>
- </operation>
- <operation name="search_glycans_by_kcam">
- <input message="typens:search_glycans_by_kcamRequest"/>
-
- <output message="typens:search_glycans_by_kcamResponse"/>
- </operation>
- <operation name="get_linkdb_between_databases">
- <input message="typens:get_linkdb_between_databasesRequest"/>
- <output message="typens:get_linkdb_between_databasesResponse"/>
- </operation>
-
-<!-- v6.1 -->
- <operation name="search_drugs_by_name">
- <input message="typens:search_drugs_by_nameRequest"/>
-
- <output message="typens:search_drugs_by_nameResponse"/>
- </operation>
- <operation name="search_drugs_by_composition">
- <input message="typens:search_drugs_by_compositionRequest"/>
- <output message="typens:search_drugs_by_compositionResponse"/>
- </operation>
- <operation name="search_drugs_by_mass">
- <input message="typens:search_drugs_by_massRequest"/>
- <output message="typens:search_drugs_by_massResponse"/>
-
- </operation>
- <operation name="search_drugs_by_subcomp">
- <input message="typens:search_drugs_by_subcompRequest"/>
- <output message="typens:search_drugs_by_subcompResponse"/>
- </operation>
-
- </portType>
-
-
- <binding name="KEGGBinding" type="typens:KEGGPortType">
-
- <soap:binding style="rpc" transport="http://schemas.xmlsoap.org/soap/http"/>
-<!-- KEGG information -->
- <operation name="list_databases">
- <soap:operation soapAction="SOAP/KEGG#list_databases"/>
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </input>
- <output>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
-
- </output>
- </operation>
- <operation name="list_organisms">
- <soap:operation soapAction="SOAP/KEGG#list_organisms"/>
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </input>
- <output>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
-
- </output>
- </operation>
- <operation name="list_pathways">
- <soap:operation soapAction="SOAP/KEGG#list_pathways"/>
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </input>
- <output>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
-
- </output>
- </operation>
- <operation name="list_ko_classes">
- <soap:operation soapAction="SOAP/KEGG#list_ko_classes"/>
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </input>
- <output>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
-
- </output>
- </operation>
-<!-- DBGET -->
- <operation name="binfo">
- <soap:operation soapAction="SOAP/KEGG#binfo"/>
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </input>
- <output>
-
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </output>
- </operation>
- <operation name="bget">
- <soap:operation soapAction="SOAP/KEGG#bget"/>
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </input>
- <output>
-
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </output>
- </operation>
- <operation name="bfind">
- <soap:operation soapAction="SOAP/KEGG#bfind"/>
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </input>
- <output>
-
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </output>
- </operation>
- <operation name="btit">
- <soap:operation soapAction="SOAP/KEGG#btit"/>
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </input>
- <output>
-
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </output>
- </operation>
- <operation name="bconv">
- <soap:operation soapAction="SOAP/KEGG#bconv"/>
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </input>
- <output>
-
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </output>
- </operation>
-<!-- LinkDB -->
- <operation name="get_linkdb_by_entry">
- <soap:operation soapAction="SOAP/KEGG#get_linkdb_by_entry"/>
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </input>
-
- <output>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </output>
- </operation>
-<!-- SSDB -->
- <operation name="get_best_neighbors_by_gene">
- <soap:operation soapAction="SOAP/KEGG#get_best_neighbors_by_gene"/>
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
-
- </input>
- <output>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </output>
- </operation>
- <operation name="get_best_best_neighbors_by_gene">
- <soap:operation soapAction="SOAP/KEGG#get_best_best_neighbors_by_gene"/>
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
-
- </input>
- <output>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </output>
- </operation>
- <operation name="get_reverse_best_neighbors_by_gene">
- <soap:operation soapAction="SOAP/KEGG#get_reverse_best_neighbors_by_gene"/>
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
-
- </input>
- <output>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </output>
- </operation>
- <operation name="get_paralogs_by_gene">
- <soap:operation soapAction="SOAP/KEGG#get_paralogs_by_gene"/>
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
-
- </input>
- <output>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </output>
- </operation>
-<!-- MOTIF -->
- <operation name="get_motifs_by_gene">
- <soap:operation soapAction="SOAP/KEGG#get_motifs_by_gene"/>
- <input>
-
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </input>
- <output>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </output>
- </operation>
- <operation name="get_genes_by_motifs">
- <soap:operation soapAction="SOAP/KEGG#get_genes_by_motifs"/>
- <input>
-
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </input>
- <output>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </output>
- </operation>
-<!-- KO,OC,PC -->
- <operation name="get_ko_by_gene">
- <soap:operation soapAction="SOAP/KEGG#get_ko_by_gene"/>
-
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </input>
- <output>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </output>
- </operation>
- <operation name="get_ko_by_ko_class">
- <soap:operation soapAction="SOAP/KEGG#get_ko_by_ko_class"/>
-
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </input>
- <output>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </output>
- </operation>
- <operation name="get_genes_by_ko">
- <soap:operation soapAction="SOAP/KEGG#get_genes_by_ko"/>
-
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </input>
- <output>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </output>
- </operation>
- <operation name="get_genes_by_ko_class">
- <soap:operation soapAction="SOAP/KEGG#get_genes_by_ko_class"/>
-
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </input>
- <output>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </output>
- </operation>
-<!--
- <operation name="get_oc_members_by_gene">
- <soap:operation soapAction="SOAP/KEGG#get_oc_members_by_gene"/>
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </input>
- <output>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </output>
- </operation>
--->
-<!--
- <operation name="get_pc_members_by_gene">
- <soap:operation soapAction="SOAP/KEGG#get_pc_members_by_gene"/>
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </input>
- <output>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </output>
- </operation>
--->
-<!-- PATHWAY -->
-
-<!-- Coloring pathways -->
- <operation name="get_elements_by_pathway">
- <soap:operation soapAction="SOAP/KEGG#get_elements_by_pathway"/>
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </input>
- <output>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </output>
-
- </operation>
- <operation name="get_element_relations_by_pathway">
- <soap:operation soapAction="SOAP/KEGG#get_element_relations_by_pathway"/>
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </input>
- <output>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </output>
-
- </operation>
- <operation name="color_pathway_by_elements">
- <soap:operation soapAction="SOAP/KEGG#color_pathway_by_elements"/>
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </input>
- <output>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </output>
-
- </operation>
- <operation name="get_html_of_colored_pathway_by_elements">
- <soap:operation soapAction="SOAP/KEGG#get_html_of_colored_pathway_by_elements"/>
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </input>
- <output>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </output>
-
- </operation>
-
- <operation name="mark_pathway_by_objects">
- <soap:operation soapAction="SOAP/KEGG#mark_pathway_by_objects"/>
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </input>
- <output>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
-
- </output>
- </operation>
- <operation name="color_pathway_by_objects">
- <soap:operation soapAction="SOAP/KEGG#color_pathway_by_objects"/>
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </input>
- <output>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
-
- </output>
- </operation>
- <operation name="get_html_of_marked_pathway_by_objects">
- <soap:operation soapAction="SOAP/KEGG#get_html_of_marked_pathway_by_objects"/>
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </input>
- <output>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
-
- </output>
- </operation>
- <operation name="get_html_of_colored_pathway_by_objects">
- <soap:operation soapAction="SOAP/KEGG#get_html_of_colored_pathway_by_objects"/>
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </input>
- <output>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
-
- </output>
- </operation>
-<!-- Objects on the pathway -->
- <operation name="get_genes_by_pathway">
- <soap:operation soapAction="SOAP/KEGG#get_genes_by_pathway"/>
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </input>
- <output>
-
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </output>
- </operation>
- <operation name="get_enzymes_by_pathway">
- <soap:operation soapAction="SOAP/KEGG#get_enzymes_by_pathway"/>
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </input>
- <output>
-
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </output>
- </operation>
- <operation name="get_reactions_by_pathway">
- <soap:operation soapAction="SOAP/KEGG#get_reactions_by_pathway"/>
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </input>
- <output>
-
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </output>
- </operation>
-<!-- Pathways by object -->
- <operation name="get_pathways_by_genes">
- <soap:operation soapAction="SOAP/KEGG#get_pathways_by_genes"/>
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </input>
-
- <output>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </output>
- </operation>
- <operation name="get_pathways_by_enzymes">
- <soap:operation soapAction="SOAP/KEGG#get_pathways_by_enzymes"/>
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </input>
-
- <output>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </output>
- </operation>
- <operation name="get_pathways_by_reactions">
- <soap:operation soapAction="SOAP/KEGG#get_pathways_by_reactions"/>
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </input>
-
- <output>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </output>
- </operation>
-<!-- Mutual transformation of objects -->
- <operation name="get_linked_pathways">
- <soap:operation soapAction="SOAP/KEGG#get_linked_pathways"/>
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
-
- </input>
- <output>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </output>
- </operation>
- <operation name="get_genes_by_enzyme">
- <soap:operation soapAction="SOAP/KEGG#get_genes_by_enzyme"/>
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
-
- </input>
- <output>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </output>
- </operation>
- <operation name="get_enzymes_by_gene">
- <soap:operation soapAction="SOAP/KEGG#get_enzymes_by_gene"/>
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
-
- </input>
- <output>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </output>
- </operation>
- <operation name="get_enzymes_by_reaction">
- <soap:operation soapAction="SOAP/KEGG#get_enzymes_by_reaction"/>
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
-
- </input>
- <output>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </output>
- </operation>
- <operation name="get_reactions_by_enzyme">
- <soap:operation soapAction="SOAP/KEGG#get_reactions_by_enzyme"/>
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
-
- </input>
- <output>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </output>
- </operation>
-<!-- GENES -->
- <operation name="get_genes_by_organism">
- <soap:operation soapAction="SOAP/KEGG#get_genes_by_organism"/>
- <input>
-
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </input>
- <output>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </output>
- </operation>
-<!-- GENOME -->
- <operation name="get_number_of_genes_by_organism">
- <soap:operation soapAction="SOAP/KEGG#get_number_of_genes_by_organism"/>
-
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </input>
- <output>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </output>
- </operation>
-<!-- LIGAND -->
- <operation name="get_reactions_by_glycan">
-
- <soap:operation soapAction="SOAP/KEGG#get_reactions_by_glycan"/>
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </input>
- <output>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </output>
- </operation>
- <operation name="get_reactions_by_compound">
-
- <soap:operation soapAction="SOAP/KEGG#get_reactions_by_compound"/>
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </input>
- <output>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </output>
- </operation>
- <operation name="get_enzymes_by_glycan">
-
- <soap:operation soapAction="SOAP/KEGG#get_enzymes_by_glycan"/>
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </input>
- <output>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </output>
- </operation>
- <operation name="get_enzymes_by_compound">
-
- <soap:operation soapAction="SOAP/KEGG#get_enzymes_by_compound"/>
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </input>
- <output>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </output>
- </operation>
- <operation name="get_pathways_by_compounds">
-
- <soap:operation soapAction="SOAP/KEGG#get_pathways_by_compounds"/>
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </input>
- <output>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </output>
- </operation>
- <operation name="get_pathways_by_glycans">
-
- <soap:operation soapAction="SOAP/KEGG#get_pathways_by_glycans"/>
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </input>
- <output>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </output>
- </operation>
- <operation name="get_compounds_by_pathway">
-
- <soap:operation soapAction="SOAP/KEGG#get_compounds_by_pathway"/>
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </input>
- <output>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </output>
- </operation>
- <operation name="get_glycans_by_pathway">
-
- <soap:operation soapAction="SOAP/KEGG#get_glycans_by_pathway"/>
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </input>
- <output>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </output>
- </operation>
- <operation name="get_compounds_by_reaction">
-
- <soap:operation soapAction="SOAP/KEGG#get_compounds_by_reaction"/>
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </input>
- <output>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </output>
- </operation>
- <operation name="get_glycans_by_reaction">
-
- <soap:operation soapAction="SOAP/KEGG#get_glycans_by_reaction"/>
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </input>
- <output>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </output>
- </operation>
- <operation name="get_compounds_by_enzyme">
-
- <soap:operation soapAction="SOAP/KEGG#get_compounds_by_enzyme"/>
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </input>
- <output>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </output>
- </operation>
- <operation name="get_glycans_by_enzyme">
-
- <soap:operation soapAction="SOAP/KEGG#get_glycans_by_enzyme"/>
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </input>
- <output>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </output>
- </operation>
- <operation name="convert_mol_to_kcf">
-
- <soap:operation soapAction="SOAP/KEGG#convert_mol_to_kcf"/>
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </input>
- <output>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </output>
- </operation>
- <operation name="get_kos_by_pathway">
-
- <soap:operation soapAction="SOAP/KEGG#get_kos_by_pathway"/>
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </input>
- <output>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </output>
- </operation>
- <operation name="get_pathways_by_kos">
-
- <soap:operation soapAction="SOAP/KEGG#get_pathways_by_kos"/>
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </input>
- <output>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </output>
- </operation>
-
-<!-- v6.0 -->
- <operation name="search_compounds_by_name">
- <soap:operation soapAction="SOAP/KEGG#search_compounds_by_name"/>
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </input>
- <output>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </output>
-
- </operation>
- <operation name="search_glycans_by_name">
- <soap:operation soapAction="SOAP/KEGG#search_glycans_by_name"/>
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </input>
- <output>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </output>
-
- </operation>
- <operation name="search_compounds_by_composition">
- <soap:operation soapAction="SOAP/KEGG#search_compounds_by_composition"/>
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </input>
- <output>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </output>
-
- </operation>
- <operation name="search_compounds_by_mass">
- <soap:operation soapAction="SOAP/KEGG#search_compounds_by_mass"/>
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </input>
- <output>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </output>
-
- </operation>
- <operation name="search_glycans_by_mass">
- <soap:operation soapAction="SOAP/KEGG#search_glycans_by_mass"/>
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </input>
- <output>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </output>
-
- </operation>
- <operation name="search_glycans_by_composition">
- <soap:operation soapAction="SOAP/KEGG#search_glycans_by_composition"/>
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </input>
- <output>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </output>
-
- </operation>
- <operation name="search_compounds_by_subcomp">
- <soap:operation soapAction="SOAP/KEGG#search_compounds_by_subcomp"/>
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </input>
- <output>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </output>
-
- </operation>
- <operation name="search_glycans_by_kcam">
- <soap:operation soapAction="SOAP/KEGG#search_glycans_by_kcam"/>
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </input>
- <output>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </output>
-
- </operation>
- <operation name="get_linkdb_between_databases">
- <soap:operation soapAction="SOAP/KEGG#get_linkdb_between_databases"/>
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </input>
- <output>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </output>
-
- </operation>
-
-<!-- v6.1 -->
- <operation name="search_drugs_by_name">
- <soap:operation soapAction="SOAP/KEGG#search_drugs_by_name"/>
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </input>
- <output>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
-
- </output>
- </operation>
- <operation name="search_drugs_by_composition">
- <soap:operation soapAction="SOAP/KEGG#search_drugs_by_composition"/>
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </input>
- <output>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
-
- </output>
- </operation>
- <operation name="search_drugs_by_mass">
- <soap:operation soapAction="SOAP/KEGG#search_drugs_by_mass"/>
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </input>
- <output>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
-
- </output>
- </operation>
- <operation name="search_drugs_by_subcomp">
- <soap:operation soapAction="SOAP/KEGG#search_drugs_by_subcomp"/>
- <input>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
- </input>
- <output>
- <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
-
- </output>
- </operation>
-
- </binding>
-
- <service name="KEGG">
- <port name="KEGGPort" binding="typens:KEGGBinding">
- <soap:address location="http://soap.genome.jp/keggapi/request_v6.1.cgi"/>
- </port>
- </service>
-
-</definitions>
http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench-common-activities/blob/b4725724/taverna-xpath-activity-ui/pom.xml
----------------------------------------------------------------------
diff --git a/taverna-xpath-activity-ui/pom.xml b/taverna-xpath-activity-ui/pom.xml
deleted file mode 100644
index 53b81ee..0000000
--- a/taverna-xpath-activity-ui/pom.xml
+++ /dev/null
@@ -1,68 +0,0 @@
-<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
- xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
- <modelVersion>4.0.0</modelVersion>
- <parent>
- <groupId>net.sf.taverna</groupId>
- <artifactId>taverna-parent</artifactId>
- <version>3.0.1-SNAPSHOT</version>
- </parent>
- <groupId>net.sf.taverna.t2.ui-activities</groupId>
- <artifactId>xpath-activity-ui</artifactId>
- <version>2.0-SNAPSHOT</version>
- <packaging>bundle</packaging>
- <name>XPath Activity - UI bindings</name>
- <dependencies>
- <dependency>
- <groupId>net.sf.taverna.t2.activities</groupId>
- <artifactId>xpath-activity</artifactId>
- <version>${t2.activities.version}</version>
- </dependency>
- <dependency>
- <groupId>net.sf.taverna.t2.ui-api</groupId>
- <artifactId>activity-icons-api</artifactId>
- <version>${t2.ui.api.version}</version>
- </dependency>
- <dependency>
- <groupId>net.sf.taverna.t2.ui-api</groupId>
- <artifactId>contextual-views-api</artifactId>
- <version>${t2.ui.api.version}</version>
- </dependency>
- <dependency>
- <groupId>net.sf.taverna.t2.ui-api</groupId>
- <artifactId>menu-api</artifactId>
- <version>${t2.ui.api.version}</version>
- </dependency>
- <dependency>
- <groupId>net.sf.taverna.t2.ui-api</groupId>
- <artifactId>report-api</artifactId>
- <version>${t2.ui.api.version}</version>
- </dependency>
- <dependency>
- <groupId>net.sf.taverna.t2.ui-components</groupId>
- <artifactId>workflow-view</artifactId>
- <version>${t2.ui.components.version}</version>
- </dependency>
- </dependencies>
-
- <repositories>
- <repository>
- <releases />
- <snapshots>
- <enabled>false</enabled>
- </snapshots>
- <id>mygrid-repository</id>
- <name>myGrid Repository</name>
- <url>http://www.mygrid.org.uk/maven/repository
- </url>
- </repository>
- <repository>
- <releases>
- <enabled>false</enabled>
- </releases>
- <snapshots />
- <id>mygrid-snapshot-repository</id>
- <name>myGrid Snapshot Repository</name>
- <url>http://www.mygrid.org.uk/maven/snapshot-repository</url>
- </repository>
- </repositories>
-</project>
http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench-common-activities/blob/b4725724/taverna-xpath-activity-ui/src/main/java/net/sf/taverna/t2/activities/xpath/ui/config/TwoFieldQueryPanel.java
----------------------------------------------------------------------
diff --git a/taverna-xpath-activity-ui/src/main/java/net/sf/taverna/t2/activities/xpath/ui/config/TwoFieldQueryPanel.java b/taverna-xpath-activity-ui/src/main/java/net/sf/taverna/t2/activities/xpath/ui/config/TwoFieldQueryPanel.java
deleted file mode 100644
index d0f131a..0000000
--- a/taverna-xpath-activity-ui/src/main/java/net/sf/taverna/t2/activities/xpath/ui/config/TwoFieldQueryPanel.java
+++ /dev/null
@@ -1,110 +0,0 @@
-package net.sf.taverna.t2.activities.xpath.ui.config;
-
-import java.awt.GridBagConstraints;
-import java.awt.GridBagLayout;
-import java.awt.Insets;
-
-import javax.swing.BorderFactory;
-import javax.swing.JLabel;
-import javax.swing.JPanel;
-import javax.swing.JTextField;
-
-/**
- * Auxiliary class that creates a JPanel with two labels and two text fields.
- *
- * It can be used to be placed into a dialog made by JOptionPane to get two
- * input values, not just one.
- *
- * @author Sergejs Aleksejevs
- */
-public class TwoFieldQueryPanel extends JPanel {
- private JTextField tfFirstValue;
- private JTextField tfSecondValue;
-
- public TwoFieldQueryPanel(String firstFieldName, String secondFieldName) {
- this(null, firstFieldName, null, secondFieldName, null);
- }
-
- public TwoFieldQueryPanel(String message, String firstFieldName,
- String secondFieldName) {
- this(message, firstFieldName, null, secondFieldName, null);
- }
-
- public TwoFieldQueryPanel(String firstFieldName,
- String firstFieldDefaultValue, String secondFieldName,
- String secondFieldDefaultValue) {
- this(null, firstFieldName, firstFieldDefaultValue, secondFieldName,
- secondFieldDefaultValue);
- }
-
- public TwoFieldQueryPanel(String message, String firstFieldName,
- String firstFieldDefaultValue, String secondFieldName,
- String secondFieldDefaultValue) {
- super();
- this.setBorder(BorderFactory.createEmptyBorder(5, 5, 5, 5));
-
- this.setLayout(new GridBagLayout());
- GridBagConstraints c = new GridBagConstraints();
-
- c.gridx = 0;
- c.gridy = 0;
- c.weightx = 0;
- c.fill = GridBagConstraints.HORIZONTAL;
- c.anchor = GridBagConstraints.WEST;
- c.insets = new Insets(3, 5, 3, 5);
-
- if (message != null && message.length() > 0) {
- c.gridwidth = 2;
- c.insets = new Insets(5, 5, 15, 5);
- this.add(new JLabel(message), c);
-
- c.gridwidth = 1;
- c.gridx = 0;
- c.gridy++;
- c.insets = new Insets(3, 5, 3, 5);
- }
-
- this.add(new JLabel(firstFieldName), c);
-
- c.gridx++;
- c.weightx = 1.0;
- tfFirstValue = new JTextField(20);
- if (firstFieldDefaultValue != null) {
- tfFirstValue.setText(firstFieldDefaultValue);
- }
- tfFirstValue.selectAll();
- tfFirstValue.requestFocusInWindow();
- this.add(tfFirstValue, c);
-
- c.gridx = 0;
- c.gridy++;
- c.weightx = 0;
- this.add(new JLabel(secondFieldName), c);
-
- c.gridx++;
- c.weightx = 1.0;
- tfSecondValue = new JTextField(20);
- if (secondFieldDefaultValue != null) {
- tfSecondValue.setText(secondFieldDefaultValue);
- }
- tfSecondValue.selectAll();
- this.add(tfSecondValue, c);
- }
-
- /**
- * @return Trimmed value from the first text field. Guaranteed to be
- * non-null.
- */
- public String getFirstValue() {
- return (tfFirstValue.getText().trim());
- }
-
- /**
- * @return Trimmed value from the second text field. Guaranteed to be
- * non-null.
- */
- public String getSecondValue() {
- return (tfSecondValue.getText().trim());
- }
-
-}