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Posted to commits@doris.apache.org by "xinyiZzz (via GitHub)" <gi...@apache.org> on 2024/07/09 07:15:40 UTC
[PR] [fix](memory) Disable Arrow Jemalloc [doris]
xinyiZzz opened a new pull request, #37528:
URL: https://github.com/apache/doris/pull/37528
## Proposed changes
Currently, Arrow use separate Jemalloc, and use non-standard methods `mallocx`, `sdallocx`, `rallocx` in `memory_pool_jemalloc.cc` to optimize memory allocation.
But this may be incompatible with older versions of the Linux kernel. when we use Arrow on Arm Kirin v10 or Centos 7.4, it will get stuck on the Jemalloc Lock, with the stack below, it will appear when calling `arrow::RecordBatch::MakeEmpty`. the kernel version of Arm Kylin v10 is 4.19.90, and the kernel version of Centos 7.4 is 4.14.
```
#0 0x0000ffffae3ceff8 in __lll_lock_wait () from /lib64/libpthread.so.0
#1 0x0000ffffae3c9b50 in pthread_mutex_lock () from /lib64/libpthread.so.0
#2 0x0000ffffae61c834 in pthread_mutex_lock () from /lib64/libc.so.6
#3 0x0000aaaac99bc1e0 in je_arrow_private_je_malloc_mutex_lock_slow ()
#4 0x0000aaaac99af3a4 in ?? ()
#5 0x0000aaaac99b576c in je_arrow_mallocx ()
#6 0x0000aaaac99a8aec in ?? ()
#7 0x0000aaaac99a9858 in arrow::AllocateResizableBuffer(long, arrow::MemoryPool*) ()
#8 0x0000aaaac399f8b8 in arrow::BufferBuilder::Resize(long, bool) ()
#9 0x0000aaaac983715c in arrow::BaseBinaryBuilder<arrow::BinaryType>::Resize(long) ()
#10 0x0000aaaac39a47e0 in arrow::BaseBinaryBuilder<arrow::BinaryType>::Append(unsigned char const*, int) ()
```
After disable separate Jemalloc when compiling Arrow, the above error disappeared, and Arrow will use the default memory allocator, which is Doris Jemalloc.
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Re: [PR] [fix](memory) Disable Arrow Jemalloc [doris]
Posted by "doris-robot (via GitHub)" <gi...@apache.org>.
doris-robot commented on PR #37528:
URL: https://github.com/apache/doris/pull/37528#issuecomment-2217976875
<details>
<summary>TPC-DS: <b>Total hot run time: 172741 ms</b></summary>
```
machine: 'aliyun_ecs.c7a.8xlarge_32C64G'
scripts: https://github.com/apache/doris/tree/master/tools/tpcds-tools
TPC-DS sf100 test result on commit 569cde15e08897015e31cf3e2c532ed6683e6e9e, data reload: false
query1 924 377 357 357
query2 6451 2577 2375 2375
query3 6654 213 226 213
query4 28656 17476 17263 17263
query5 4187 474 484 474
query6 271 191 167 167
query7 4600 284 288 284
query8 338 306 300 300
query9 8426 2402 2378 2378
query10 444 284 277 277
query11 12951 9955 10046 9955
query12 135 84 82 82
query13 1642 375 376 375
query14 10178 7566 7707 7566
query15 237 184 190 184
query16 7928 322 298 298
query17 2035 539 526 526
query18 1965 279 275 275
query19 205 149 153 149
query20 91 83 83 83
query21 206 128 124 124
query22 4357 4085 4022 4022
query23 33712 32976 33237 32976
query24 12069 2835 2753 2753
query25 654 370 370 370
query26 1784 150 150 150
query27 2944 270 276 270
query28 7779 2061 2052 2052
query29 1127 622 606 606
query30 288 146 148 146
query31 1003 761 738 738
query32 93 54 54 54
query33 767 321 322 321
query34 919 484 478 478
query35 715 581 555 555
query36 1100 931 915 915
query37 297 82 78 78
query38 2863 2742 2726 2726
query39 869 797 803 797
query40 277 121 119 119
query41 56 53 50 50
query42 123 96 102 96
query43 621 537 536 536
query44 1177 749 738 738
query45 188 160 162 160
query46 1070 713 737 713
query47 1875 1753 1772 1753
query48 387 300 302 300
query49 1193 425 413 413
query50 775 405 391 391
query51 6709 6736 6717 6717
query52 103 89 103 89
query53 365 297 292 292
query54 1006 459 456 456
query55 76 73 72 72
query56 293 271 266 266
query57 1198 1048 1027 1027
query58 269 251 251 251
query59 3468 3397 3195 3195
query60 297 291 280 280
query61 97 96 98 96
query62 810 636 666 636
query63 327 292 296 292
query64 10461 2196 1613 1613
query65 3178 3145 3096 3096
query66 1363 337 337 337
query67 15272 15039 14984 14984
query68 4466 540 545 540
query69 469 327 335 327
query70 1060 1082 1100 1082
query71 386 292 282 282
query72 7149 5430 5055 5055
query73 743 325 327 325
query74 5946 5449 5463 5449
query75 3420 2682 2688 2682
query76 2704 936 908 908
query77 460 306 314 306
query78 9460 8953 8864 8864
query79 2672 507 510 507
query80 1922 489 480 480
query81 586 216 221 216
query82 800 140 136 136
query83 287 168 177 168
query84 267 96 86 86
query85 2170 316 312 312
query86 486 309 311 309
query87 3266 3117 3063 3063
query88 4328 2440 2445 2440
query89 498 402 376 376
query90 1857 198 187 187
query91 132 104 104 104
query92 58 47 48 47
query93 2895 508 509 508
query94 1208 210 210 210
query95 401 314 316 314
query96 597 279 268 268
query97 3149 3056 3102 3056
query98 234 200 192 192
query99 1638 1262 1268 1262
Total cold run time: 290612 ms
Total hot run time: 172741 ms
```
</details>
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Re: [PR] [fix](memory) Disable Arrow Jemalloc [doris]
Posted by "doris-robot (via GitHub)" <gi...@apache.org>.
doris-robot commented on PR #37528:
URL: https://github.com/apache/doris/pull/37528#issuecomment-2217988640
<details>
<summary>ClickBench: <b>Total hot run time: 31.12 s</b></summary>
```
machine: 'aliyun_ecs.c7a.8xlarge_32C64G'
scripts: https://github.com/apache/doris/tree/master/tools/clickbench-tools
ClickBench test result on commit 569cde15e08897015e31cf3e2c532ed6683e6e9e, data reload: false
query1 0.04 0.04 0.03
query2 0.07 0.04 0.04
query3 0.22 0.06 0.05
query4 1.67 0.10 0.10
query5 0.50 0.49 0.49
query6 1.14 0.73 0.73
query7 0.02 0.01 0.02
query8 0.04 0.04 0.04
query9 0.54 0.48 0.48
query10 0.54 0.53 0.54
query11 0.16 0.12 0.12
query12 0.15 0.13 0.13
query13 0.60 0.59 0.59
query14 0.76 0.78 0.78
query15 0.86 0.81 0.83
query16 0.35 0.37 0.35
query17 1.01 1.01 1.03
query18 0.22 0.22 0.23
query19 1.73 1.76 1.65
query20 0.01 0.01 0.01
query21 15.43 0.76 0.67
query22 4.14 6.14 2.37
query23 18.30 1.41 1.27
query24 2.18 0.22 0.23
query25 0.16 0.09 0.09
query26 0.30 0.21 0.20
query27 0.46 0.23 0.22
query28 13.22 1.03 1.01
query29 12.65 3.33 3.31
query30 0.25 0.06 0.06
query31 2.86 0.38 0.38
query32 3.28 0.48 0.47
query33 2.93 2.88 2.92
query34 16.87 4.38 4.35
query35 4.40 4.42 4.41
query36 0.65 0.48 0.47
query37 0.18 0.15 0.17
query38 0.16 0.14 0.15
query39 0.05 0.03 0.04
query40 0.15 0.12 0.12
query41 0.09 0.05 0.05
query42 0.06 0.05 0.05
query43 0.04 0.04 0.03
Total cold run time: 109.44 s
Total hot run time: 31.12 s
```
</details>
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Re: [PR] [fix](memory) Disable Arrow Jemalloc [doris]
Posted by "morningman (via GitHub)" <gi...@apache.org>.
morningman commented on PR #37528:
URL: https://github.com/apache/doris/pull/37528#issuecomment-2217898136
run buildall
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Re: [PR] [fix](memory) Disable Arrow Jemalloc [doris]
Posted by "github-actions[bot] (via GitHub)" <gi...@apache.org>.
github-actions[bot] commented on PR #37528:
URL: https://github.com/apache/doris/pull/37528#issuecomment-2218107808
PR approved by at least one committer and no changes requested.
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Re: [PR] [fix](memory) Disable Arrow Jemalloc [doris]
Posted by "github-actions[bot] (via GitHub)" <gi...@apache.org>.
github-actions[bot] commented on PR #37528:
URL: https://github.com/apache/doris/pull/37528#issuecomment-2218107892
PR approved by anyone and no changes requested.
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Re: [PR] [fix](memory) Disable Arrow Jemalloc [doris]
Posted by "xinyiZzz (via GitHub)" <gi...@apache.org>.
xinyiZzz commented on PR #37528:
URL: https://github.com/apache/doris/pull/37528#issuecomment-2216786426
run buildall
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Re: [PR] [fix](memory) Disable Arrow Jemalloc [doris]
Posted by "doris-robot (via GitHub)" <gi...@apache.org>.
doris-robot commented on PR #37528:
URL: https://github.com/apache/doris/pull/37528#issuecomment-2216786381
Thank you for your contribution to Apache Doris.
Don't know what should be done next? See [How to process your PR](https://cwiki.apache.org/confluence/display/DORIS/How+to+process+your+PR)
Since 2024-03-18, the Document has been moved to [doris-website](https://github.com/apache/doris-website).
See [Doris Document](https://cwiki.apache.org/confluence/display/DORIS/Doris+Document).
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Re: [PR] [fix](memory) Disable Arrow Jemalloc [doris]
Posted by "doris-robot (via GitHub)" <gi...@apache.org>.
doris-robot commented on PR #37528:
URL: https://github.com/apache/doris/pull/37528#issuecomment-2217947763
<details>
<summary>TPC-H: <b>Total hot run time: 40009 ms</b></summary>
```
machine: 'aliyun_ecs.c7a.8xlarge_32C64G'
scripts: https://github.com/apache/doris/tree/master/tools/tpch-tools
Tpch sf100 test result on commit 569cde15e08897015e31cf3e2c532ed6683e6e9e, data reload: false
------ Round 1 ----------------------------------
q1 18164 4388 4376 4376
q2 2460 200 194 194
q3 11029 1172 1170 1170
q4 10696 793 736 736
q5 7800 2672 2706 2672
q6 227 140 144 140
q7 962 620 635 620
q8 9416 2098 2105 2098
q9 8847 6539 6459 6459
q10 8782 3690 3736 3690
q11 476 243 248 243
q12 401 237 237 237
q13 17767 2982 2993 2982
q14 269 230 237 230
q15 527 484 499 484
q16 510 379 373 373
q17 979 720 716 716
q18 8143 7507 7361 7361
q19 3956 1528 1314 1314
q20 689 321 342 321
q21 4950 3249 3244 3244
q22 409 349 360 349
Total cold run time: 117459 ms
Total hot run time: 40009 ms
----- Round 2, with runtime_filter_mode=off -----
q1 4586 4290 4212 4212
q2 370 253 272 253
q3 3002 2768 2728 2728
q4 1869 1605 1592 1592
q5 5274 5290 5255 5255
q6 225 132 135 132
q7 2123 1720 1688 1688
q8 3182 3368 3312 3312
q9 8358 8425 8348 8348
q10 3848 3634 3634 3634
q11 581 495 477 477
q12 795 596 630 596
q13 16318 2971 3031 2971
q14 291 269 269 269
q15 519 480 470 470
q16 479 418 420 418
q17 1800 1473 1455 1455
q18 7745 7480 7377 7377
q19 1733 1647 1653 1647
q20 1985 1797 1791 1791
q21 4828 4801 4670 4670
q22 607 547 568 547
Total cold run time: 70518 ms
Total hot run time: 53842 ms
```
</details>
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Re: [PR] [fix](memory) Disable Arrow Jemalloc [doris]
Posted by "xinyiZzz (via GitHub)" <gi...@apache.org>.
xinyiZzz commented on PR #37528:
URL: https://github.com/apache/doris/pull/37528#issuecomment-2217403187
run buildall
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Re: [PR] [fix](memory) Disable Arrow Jemalloc [doris]
Posted by "xinyiZzz (via GitHub)" <gi...@apache.org>.
xinyiZzz commented on PR #37528:
URL: https://github.com/apache/doris/pull/37528#issuecomment-2216842962
run buildall
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Re: [PR] [fix](memory) Disable Arrow Jemalloc [doris]
Posted by "doris-robot (via GitHub)" <gi...@apache.org>.
doris-robot commented on PR #37528:
URL: https://github.com/apache/doris/pull/37528#issuecomment-2216876595
<details>
<summary>TPC-H: <b>Total hot run time: 39834 ms</b></summary>
```
machine: 'aliyun_ecs.c7a.8xlarge_32C64G'
scripts: https://github.com/apache/doris/tree/master/tools/tpch-tools
Tpch sf100 test result on commit fc2fc027aaf942a5f4f2b681375296ab67275fdd, data reload: false
------ Round 1 ----------------------------------
q1 18059 4462 4388 4388
q2 3043 201 194 194
q3 12408 1161 1132 1132
q4 10644 749 805 749
q5 7849 2704 2622 2622
q6 227 141 141 141
q7 959 602 603 602
q8 9249 2084 2064 2064
q9 8998 6502 6459 6459
q10 8951 3704 3777 3704
q11 468 242 249 242
q12 414 232 236 232
q13 17774 2974 2985 2974
q14 285 224 223 223
q15 529 475 494 475
q16 506 383 374 374
q17 969 701 667 667
q18 8057 7507 7397 7397
q19 7454 1576 1365 1365
q20 703 342 341 341
q21 4928 3142 4049 3142
q22 412 352 347 347
Total cold run time: 122886 ms
Total hot run time: 39834 ms
----- Round 2, with runtime_filter_mode=off -----
q1 4389 4265 4269 4265
q2 376 263 270 263
q3 3005 2783 2811 2783
q4 1845 1587 1639 1587
q5 5236 5262 5285 5262
q6 226 132 134 132
q7 2127 1782 1724 1724
q8 3212 3364 3322 3322
q9 8381 8354 8396 8354
q10 3848 3664 3653 3653
q11 596 491 469 469
q12 783 620 604 604
q13 16453 2992 3028 2992
q14 293 265 252 252
q15 521 475 495 475
q16 473 415 416 415
q17 1798 1507 1473 1473
q18 7752 7584 7438 7438
q19 1715 1512 1451 1451
q20 1969 1811 1769 1769
q21 5001 4768 4821 4768
q22 660 556 573 556
Total cold run time: 70659 ms
Total hot run time: 54007 ms
```
</details>
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Re: [PR] [fix](memory) Disable Arrow Jemalloc [doris]
Posted by "morningman (via GitHub)" <gi...@apache.org>.
morningman merged PR #37528:
URL: https://github.com/apache/doris/pull/37528
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Re: [PR] [fix](memory) Disable Arrow Jemalloc [doris]
Posted by "doris-robot (via GitHub)" <gi...@apache.org>.
doris-robot commented on PR #37528:
URL: https://github.com/apache/doris/pull/37528#issuecomment-2216899631
<details>
<summary>TPC-DS: <b>Total hot run time: 169964 ms</b></summary>
```
machine: 'aliyun_ecs.c7a.8xlarge_32C64G'
scripts: https://github.com/apache/doris/tree/master/tools/tpcds-tools
TPC-DS sf100 test result on commit fc2fc027aaf942a5f4f2b681375296ab67275fdd, data reload: false
query1 908 368 369 368
query2 6904 2310 2378 2310
query3 6656 216 229 216
query4 24843 17556 17358 17358
query5 4244 497 494 494
query6 269 195 177 177
query7 4596 298 307 298
query8 325 308 303 303
query9 8675 2465 2480 2465
query10 449 295 299 295
query11 10866 10009 10011 10009
query12 137 89 81 81
query13 1637 366 372 366
query14 10352 6998 8416 6998
query15 235 192 181 181
query16 7201 316 314 314
query17 1809 550 532 532
query18 1186 298 271 271
query19 195 150 146 146
query20 90 81 81 81
query21 208 133 134 133
query22 4306 3981 3954 3954
query23 33534 32903 33040 32903
query24 11243 2863 2807 2807
query25 605 364 369 364
query26 1369 150 150 150
query27 2612 274 279 274
query28 7198 2095 2084 2084
query29 922 653 632 632
query30 287 152 150 150
query31 966 740 744 740
query32 98 55 55 55
query33 795 318 319 318
query34 887 483 493 483
query35 726 567 572 567
query36 1110 958 971 958
query37 138 79 80 79
query38 2881 2726 2716 2716
query39 847 782 811 782
query40 283 120 117 117
query41 52 52 51 51
query42 117 96 103 96
query43 563 563 570 563
query44 1190 735 726 726
query45 193 161 160 160
query46 1102 726 705 705
query47 1824 1747 1752 1747
query48 370 300 294 294
query49 1100 415 411 411
query50 774 404 406 404
query51 6873 6751 6878 6751
query52 100 100 99 99
query53 357 299 291 291
query54 963 491 448 448
query55 75 73 75 73
query56 290 262 268 262
query57 1138 1026 1060 1026
query58 247 239 259 239
query59 3204 3379 3200 3200
query60 309 275 272 272
query61 93 94 91 91
query62 839 658 679 658
query63 334 289 288 288
query64 10449 2176 1630 1630
query65 3175 3098 3118 3098
query66 1302 338 330 330
query67 15430 14938 14942 14938
query68 4614 556 552 552
query69 480 349 329 329
query70 1209 1120 1106 1106
query71 387 285 282 282
query72 7287 2767 2623 2623
query73 749 322 332 322
query74 5956 5595 5475 5475
query75 3472 2687 2686 2686
query76 2837 903 922 903
query77 467 309 311 309
query78 9446 8928 8783 8783
query79 2115 514 512 512
query80 1487 471 463 463
query81 566 221 228 221
query82 778 144 137 137
query83 202 167 166 166
query84 280 87 91 87
query85 1443 310 299 299
query86 454 334 329 329
query87 3273 3081 3117 3081
query88 3830 2449 2463 2449
query89 484 398 385 385
query90 1858 195 196 195
query91 132 103 102 102
query92 69 48 52 48
query93 2318 495 502 495
query94 1227 218 215 215
query95 500 326 318 318
query96 585 271 269 269
query97 3186 3044 2997 2997
query98 221 210 198 198
query99 1588 1300 1248 1248
Total cold run time: 278555 ms
Total hot run time: 169964 ms
```
</details>
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Re: [PR] [fix](memory) Disable Arrow Jemalloc [doris]
Posted by "doris-robot (via GitHub)" <gi...@apache.org>.
doris-robot commented on PR #37528:
URL: https://github.com/apache/doris/pull/37528#issuecomment-2216909804
<details>
<summary>ClickBench: <b>Total hot run time: 30.97 s</b></summary>
```
machine: 'aliyun_ecs.c7a.8xlarge_32C64G'
scripts: https://github.com/apache/doris/tree/master/tools/clickbench-tools
ClickBench test result on commit fc2fc027aaf942a5f4f2b681375296ab67275fdd, data reload: false
query1 0.04 0.03 0.03
query2 0.07 0.04 0.04
query3 0.22 0.05 0.05
query4 1.67 0.07 0.07
query5 0.50 0.49 0.47
query6 1.14 0.72 0.72
query7 0.02 0.01 0.01
query8 0.05 0.05 0.04
query9 0.54 0.50 0.48
query10 0.54 0.54 0.55
query11 0.16 0.11 0.11
query12 0.15 0.13 0.12
query13 0.59 0.58 0.58
query14 0.78 0.79 0.78
query15 0.86 0.81 0.83
query16 0.36 0.36 0.37
query17 1.03 0.99 1.01
query18 0.24 0.23 0.22
query19 1.85 1.76 1.75
query20 0.01 0.01 0.01
query21 15.39 0.74 0.65
query22 4.69 6.58 2.22
query23 18.31 1.38 1.30
query24 2.14 0.22 0.21
query25 0.15 0.08 0.08
query26 0.30 0.22 0.22
query27 0.46 0.23 0.23
query28 13.33 1.01 1.00
query29 12.61 3.36 3.33
query30 0.26 0.06 0.05
query31 2.87 0.40 0.38
query32 3.25 0.49 0.48
query33 2.85 2.91 2.91
query34 17.14 4.35 4.37
query35 4.42 4.37 4.40
query36 0.65 0.45 0.49
query37 0.18 0.15 0.16
query38 0.15 0.15 0.14
query39 0.04 0.03 0.04
query40 0.15 0.12 0.12
query41 0.09 0.04 0.04
query42 0.05 0.04 0.04
query43 0.05 0.04 0.04
Total cold run time: 110.35 s
Total hot run time: 30.97 s
```
</details>
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