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Posted to commits@ctakes.apache.org by se...@apache.org on 2022/12/20 20:38:50 UTC

[ctakes] branch main updated: CTAKES-532 CTAKES-531

This is an automated email from the ASF dual-hosted git repository.

seanfinan pushed a commit to branch main
in repository https://gitbox.apache.org/repos/asf/ctakes.git


The following commit(s) were added to refs/heads/main by this push:
     new 4b56534  CTAKES-532 CTAKES-531
4b56534 is described below

commit 4b56534ba361a9c5957e913950223ca6bae4b1d0
Author: Sean Finan <se...@childrens.harvard.edu>
AuthorDate: Tue Dec 20 15:38:35 2022 -0500

    CTAKES-532
    CTAKES-531
---
 .../ctakes/assertion/stub/SingleDocumentProcessor.java    |  3 +++
 .../org/apache/ctakes/core/cc/html/HtmlTextWriter.java    | 15 ++++++++++-----
 .../apache/ctakes/core/cc/pretty/html/HtmlTextWriter.java | 15 ++++++++++-----
 .../org/apache/ctakes/gui/dictionary/util/FileUtil.java   |  2 +-
 4 files changed, 24 insertions(+), 11 deletions(-)

diff --git a/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/stub/SingleDocumentProcessor.java b/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/stub/SingleDocumentProcessor.java
index 1f01017..34ba7e5 100644
--- a/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/stub/SingleDocumentProcessor.java
+++ b/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/stub/SingleDocumentProcessor.java
@@ -21,6 +21,7 @@ public class SingleDocumentProcessor {
 	
 	public Object addConcept(ApiConcept ac) {
 		// TODO Auto-generated method stub
+		LOGGER.warn("This class cannot be used until CTAKES-76 is implemented.");
 		return null;
 	}
 	
@@ -46,6 +47,7 @@ public class SingleDocumentProcessor {
 
 	public Map<Integer, String> getAssertionTypeMap() {
 		// TODO Auto-generated method stub
+		LOGGER.warn("This class cannot be used until CTAKES-76 is implemented.");
 		return null;
 	}
 
@@ -74,6 +76,7 @@ public class SingleDocumentProcessor {
 
 	public String[][] getTokenArrays() {
 		// TODO Auto-generated method stub
+		LOGGER.warn("This class cannot be used until CTAKES-76 is implemented.");
 		return null;
 	}
 
diff --git a/ctakes-core/src/main/java/org/apache/ctakes/core/cc/html/HtmlTextWriter.java b/ctakes-core/src/main/java/org/apache/ctakes/core/cc/html/HtmlTextWriter.java
index 81a6a02..9e0f628 100644
--- a/ctakes-core/src/main/java/org/apache/ctakes/core/cc/html/HtmlTextWriter.java
+++ b/ctakes-core/src/main/java/org/apache/ctakes/core/cc/html/HtmlTextWriter.java
@@ -820,11 +820,16 @@ final public class HtmlTextWriter extends AbstractJCasFileWriter {
       if ( text == null || text.isEmpty() ) {
          return "";
       }
-      String safeText = text.replaceAll( "'", "&apos;" );
-      safeText = safeText.replaceAll( "\"", "&quot;" );
-      safeText = safeText.replaceAll( "@", "&amp;" );
-      safeText = safeText.replaceAll( "<", "&lt;" );
-      safeText = safeText.replaceAll( ">", "&gt;" );
+//      String safeText = text.replaceAll( "'", "&apos;" );
+//      safeText = safeText.replaceAll( "\"", "&quot;" );
+//      safeText = safeText.replaceAll( "@", "&amp;" );
+//      safeText = safeText.replaceAll( "<", "&lt;" );
+//      safeText = safeText.replaceAll( ">", "&gt;" );
+      String safeText = text.replace( "'", "&apos;" );
+      safeText = safeText.replace( "\"", "&quot;" );
+      safeText = safeText.replace( "@", "&amp;" );
+      safeText = safeText.replace( "<", "&lt;" );
+      safeText = safeText.replace( ">", "&gt;" );
       return safeText;
    }
 
diff --git a/ctakes-core/src/main/java/org/apache/ctakes/core/cc/pretty/html/HtmlTextWriter.java b/ctakes-core/src/main/java/org/apache/ctakes/core/cc/pretty/html/HtmlTextWriter.java
index 089af6e..39c92af 100644
--- a/ctakes-core/src/main/java/org/apache/ctakes/core/cc/pretty/html/HtmlTextWriter.java
+++ b/ctakes-core/src/main/java/org/apache/ctakes/core/cc/pretty/html/HtmlTextWriter.java
@@ -775,11 +775,16 @@ final public class HtmlTextWriter extends AbstractJCasFileWriter {
       if ( text == null || text.isEmpty() ) {
          return "";
       }
-      String safeText = text.replaceAll( "'", "&apos;" );
-      safeText = safeText.replaceAll( "\"", "&quot;" );
-      safeText = safeText.replaceAll( "@", "&amp;" );
-      safeText = safeText.replaceAll( "<", "&lt;" );
-      safeText = safeText.replaceAll( ">", "&gt;" );
+//      String safeText = text.replaceAll( "'", "&apos;" );
+//      safeText = safeText.replaceAll( "\"", "&quot;" );
+//      safeText = safeText.replaceAll( "@", "&amp;" );
+//      safeText = safeText.replaceAll( "<", "&lt;" );
+//      safeText = safeText.replaceAll( ">", "&gt;" );
+      String safeText = text.replace( "'", "&apos;" );
+      safeText = safeText.replace( "\"", "&quot;" );
+      safeText = safeText.replace( "@", "&amp;" );
+      safeText = safeText.replace( "<", "&lt;" );
+      safeText = safeText.replace( ">", "&gt;" );
       return safeText;
    }
 
diff --git a/ctakes-gui/src/main/java/org/apache/ctakes/gui/dictionary/util/FileUtil.java b/ctakes-gui/src/main/java/org/apache/ctakes/gui/dictionary/util/FileUtil.java
index fdf5d75..17db39d 100644
--- a/ctakes-gui/src/main/java/org/apache/ctakes/gui/dictionary/util/FileUtil.java
+++ b/ctakes-gui/src/main/java/org/apache/ctakes/gui/dictionary/util/FileUtil.java
@@ -24,7 +24,7 @@ final public class FileUtil {
       if ( dirPath == null || dirPath.isEmpty() ) {
          return parseDirText( "." );
       } else if ( dirPath.startsWith( "~" ) ) {
-         return parseDirText( dirPath.replaceAll( "~", System.getProperty( "user.home" ) ) );
+         return parseDirText( dirPath.replace( "~", System.getProperty( "user.home" ) ) );
       } else if ( dirPath.equals( "." ) ) {
          final String userDir = System.getProperty( "user.dir" );
          if ( userDir == null || userDir.isEmpty() ) {