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Posted to commits@taverna.apache.org by st...@apache.org on 2018/01/18 01:04:01 UTC
svn commit: r1821445 [6/21] - in
/incubator/taverna/site/trunk/content/javadoc/taverna-server: ./
org/apache/taverna/server/client/ org/apache/taverna/server/client/class-use/
org/apache/taverna/server/client/generic/
org/apache/taverna/server/client/g...
Modified: incubator/taverna/site/trunk/content/javadoc/taverna-server/index-all.html
URL: http://svn.apache.org/viewvc/incubator/taverna/site/trunk/content/javadoc/taverna-server/index-all.html?rev=1821445&r1=1821444&r2=1821445&view=diff
==============================================================================
--- incubator/taverna/site/trunk/content/javadoc/taverna-server/index-all.html (original)
+++ incubator/taverna/site/trunk/content/javadoc/taverna-server/index-all.html Thu Jan 18 01:03:58 2018
@@ -2,10 +2,10 @@
<!-- NewPage -->
<html lang="en">
<head>
-<!-- Generated by javadoc (1.8.0_151) on Thu Jan 04 17:06:12 GMT 2018 -->
+<!-- Generated by javadoc (1.8.0_151) on Thu Jan 18 00:59:45 GMT 2018 -->
<meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
-<title>Index (Apache Taverna Server 3.1.0-incubating-SNAPSHOT API)</title>
-<meta name="date" content="2018-01-04">
+<title>Index (Apache Taverna Server 3.1.0-incubating API)</title>
+<meta name="date" content="2018-01-18">
<link rel="stylesheet" type="text/css" href="stylesheet.css" title="Style">
<script type="text/javascript" src="script.js"></script>
</head>
@@ -13,7 +13,7 @@
<script type="text/javascript"><!--
try {
if (location.href.indexOf('is-external=true') == -1) {
- parent.document.title="Index (Apache Taverna Server 3.1.0-incubating-SNAPSHOT API)";
+ parent.document.title="Index (Apache Taverna Server 3.1.0-incubating API)";
}
}
catch(err) {
@@ -83,64 +83,64 @@
</dd>
<dt><span class="memberNameLink"><a href="org/apache/taverna/server/client/port/AbsentValue.html#AbsentValue--">AbsentValue()</a></span> - Constructor for class org.apache.taverna.server.client.port.<a href="org/apache/taverna/server/client/port/AbsentValue.html" title="class in org.apache.taverna.server.client.port">AbsentValue</a></dt>
<dd> </dd>
-<dt><a href="org/taverna/server/port_description/AbsentValue.html" title="class in org.taverna.server.port_description"><span class="typeNameLink">AbsentValue</span></a> - Class in <a href="org/taverna/server/port_description/package-summary.html">org.taverna.server.port_description</a></dt>
+<dt><a href="org/apache/taverna/server/port_description/AbsentValue.html" title="class in org.apache.taverna.server.port_description"><span class="typeNameLink">AbsentValue</span></a> - Class in <a href="org/apache/taverna/server/port_description/package-summary.html">org.apache.taverna.server.port_description</a></dt>
<dd> </dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/port_description/AbsentValue.html#AbsentValue--">AbsentValue()</a></span> - Constructor for class org.taverna.server.port_description.<a href="org/taverna/server/port_description/AbsentValue.html" title="class in org.taverna.server.port_description">AbsentValue</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/port_description/AbsentValue.html#AbsentValue--">AbsentValue()</a></span> - Constructor for class org.apache.taverna.server.port_description.<a href="org/apache/taverna/server/port_description/AbsentValue.html" title="class in org.apache.taverna.server.port_description">AbsentValue</a></dt>
<dd> </dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/master/rest/TavernaServerInputREST.InDesc.AbstractContents.html#AbstractContents--">AbstractContents()</a></span> - Constructor for class org.taverna.server.master.rest.<a href="org/taverna/server/master/rest/TavernaServerInputREST.InDesc.AbstractContents.html" title="class in org.taverna.server.master.rest">TavernaServerInputREST.InDesc.AbstractContents</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/master/rest/TavernaServerInputREST.InDesc.AbstractContents.html#AbstractContents--">AbstractContents()</a></span> - Constructor for class org.apache.taverna.server.master.rest.<a href="org/apache/taverna/server/master/rest/TavernaServerInputREST.InDesc.AbstractContents.html" title="class in org.apache.taverna.server.master.rest">TavernaServerInputREST.InDesc.AbstractContents</a></dt>
<dd> </dd>
-<dt><a href="org/taverna/server/port_description/AbstractPort.html" title="class in org.taverna.server.port_description"><span class="typeNameLink">AbstractPort</span></a> - Class in <a href="org/taverna/server/port_description/package-summary.html">org.taverna.server.port_description</a></dt>
+<dt><a href="org/apache/taverna/server/port_description/AbstractPort.html" title="class in org.apache.taverna.server.port_description"><span class="typeNameLink">AbstractPort</span></a> - Class in <a href="org/apache/taverna/server/port_description/package-summary.html">org.apache.taverna.server.port_description</a></dt>
<dd> </dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/port_description/AbstractPort.html#AbstractPort--">AbstractPort()</a></span> - Constructor for class org.taverna.server.port_description.<a href="org/taverna/server/port_description/AbstractPort.html" title="class in org.taverna.server.port_description">AbstractPort</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/port_description/AbstractPort.html#AbstractPort--">AbstractPort()</a></span> - Constructor for class org.apache.taverna.server.port_description.<a href="org/apache/taverna/server/port_description/AbstractPort.html" title="class in org.apache.taverna.server.port_description">AbstractPort</a></dt>
<dd> </dd>
-<dt><a href="org/taverna/server/port_description/AbstractPortDescription.html" title="class in org.taverna.server.port_description"><span class="typeNameLink">AbstractPortDescription</span></a> - Class in <a href="org/taverna/server/port_description/package-summary.html">org.taverna.server.port_description</a></dt>
+<dt><a href="org/apache/taverna/server/port_description/AbstractPortDescription.html" title="class in org.apache.taverna.server.port_description"><span class="typeNameLink">AbstractPortDescription</span></a> - Class in <a href="org/apache/taverna/server/port_description/package-summary.html">org.apache.taverna.server.port_description</a></dt>
<dd> </dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/port_description/AbstractPortDescription.html#AbstractPortDescription--">AbstractPortDescription()</a></span> - Constructor for class org.taverna.server.port_description.<a href="org/taverna/server/port_description/AbstractPortDescription.html" title="class in org.taverna.server.port_description">AbstractPortDescription</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/port_description/AbstractPortDescription.html#AbstractPortDescription--">AbstractPortDescription()</a></span> - Constructor for class org.apache.taverna.server.port_description.<a href="org/apache/taverna/server/port_description/AbstractPortDescription.html" title="class in org.apache.taverna.server.port_description">AbstractPortDescription</a></dt>
<dd> </dd>
-<dt><a href="org/taverna/server/master/localworker/AbstractRemoteRunFactory.html" title="class in org.taverna.server.master.localworker"><span class="typeNameLink">AbstractRemoteRunFactory</span></a> - Class in <a href="org/taverna/server/master/localworker/package-summary.html">org.taverna.server.master.localworker</a></dt>
+<dt><a href="org/apache/taverna/server/master/localworker/AbstractRemoteRunFactory.html" title="class in org.apache.taverna.server.master.localworker"><span class="typeNameLink">AbstractRemoteRunFactory</span></a> - Class in <a href="org/apache/taverna/server/master/localworker/package-summary.html">org.apache.taverna.server.master.localworker</a></dt>
<dd>
<div class="block">Bridge to remote runs via RMI.</div>
</dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/master/localworker/AbstractRemoteRunFactory.html#AbstractRemoteRunFactory--">AbstractRemoteRunFactory()</a></span> - Constructor for class org.taverna.server.master.localworker.<a href="org/taverna/server/master/localworker/AbstractRemoteRunFactory.html" title="class in org.taverna.server.master.localworker">AbstractRemoteRunFactory</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/master/localworker/AbstractRemoteRunFactory.html#AbstractRemoteRunFactory--">AbstractRemoteRunFactory()</a></span> - Constructor for class org.apache.taverna.server.master.localworker.<a href="org/apache/taverna/server/master/localworker/AbstractRemoteRunFactory.html" title="class in org.apache.taverna.server.master.localworker">AbstractRemoteRunFactory</a></dt>
<dd>
<div class="block">Set up the run expiry management engine.</div>
</dd>
-<dt><a href="org/taverna/server/port_description/AbstractValue.html" title="class in org.taverna.server.port_description"><span class="typeNameLink">AbstractValue</span></a> - Class in <a href="org/taverna/server/port_description/package-summary.html">org.taverna.server.port_description</a></dt>
+<dt><a href="org/apache/taverna/server/port_description/AbstractValue.html" title="class in org.apache.taverna.server.port_description"><span class="typeNameLink">AbstractValue</span></a> - Class in <a href="org/apache/taverna/server/port_description/package-summary.html">org.apache.taverna.server.port_description</a></dt>
<dd> </dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/port_description/AbstractValue.html#AbstractValue--">AbstractValue()</a></span> - Constructor for class org.taverna.server.port_description.<a href="org/taverna/server/port_description/AbstractValue.html" title="class in org.taverna.server.port_description">AbstractValue</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/port_description/AbstractValue.html#AbstractValue--">AbstractValue()</a></span> - Constructor for class org.apache.taverna.server.port_description.<a href="org/apache/taverna/server/port_description/AbstractValue.html" title="class in org.apache.taverna.server.port_description">AbstractValue</a></dt>
<dd> </dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/master/rest/TavernaServerDirectoryREST.NegotiationFailedException.html#accepted">accepted</a></span> - Variable in exception org.taverna.server.master.rest.<a href="org/taverna/server/master/rest/TavernaServerDirectoryREST.NegotiationFailedException.html" title="class in org.taverna.server.master.rest">TavernaServerDirectoryREST.NegotiationFailedException</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/master/rest/TavernaServerDirectoryREST.NegotiationFailedException.html#accepted">accepted</a></span> - Variable in exception org.apache.taverna.server.master.rest.<a href="org/apache/taverna/server/master/rest/TavernaServerDirectoryREST.NegotiationFailedException.html" title="class in org.apache.taverna.server.master.rest">TavernaServerDirectoryREST.NegotiationFailedException</a></dt>
<dd> </dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/localworker/server/UsageRecordReceiver.html#acceptUsageRecord-java.lang.String-">acceptUsageRecord(String)</a></span> - Method in interface org.taverna.server.localworker.server.<a href="org/taverna/server/localworker/server/UsageRecordReceiver.html" title="interface in org.taverna.server.localworker.server">UsageRecordReceiver</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/localworker/server/UsageRecordReceiver.html#acceptUsageRecord-java.lang.String-">acceptUsageRecord(String)</a></span> - Method in interface org.apache.taverna.server.localworker.server.<a href="org/apache/taverna/server/localworker/server/UsageRecordReceiver.html" title="interface in org.apache.taverna.server.localworker.server">UsageRecordReceiver</a></dt>
<dd>
<div class="block">Called to push in a usage record.</div>
</dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/master/notification/TwitterDispatcher.html#ACCESS_SECRET_PROP">ACCESS_SECRET_PROP</a></span> - Static variable in class org.taverna.server.master.notification.<a href="org/taverna/server/master/notification/TwitterDispatcher.html" title="class in org.taverna.server.master.notification">TwitterDispatcher</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/master/notification/TwitterDispatcher.html#ACCESS_SECRET_PROP">ACCESS_SECRET_PROP</a></span> - Static variable in class org.apache.taverna.server.master.notification.<a href="org/apache/taverna/server/master/notification/TwitterDispatcher.html" title="class in org.apache.taverna.server.master.notification">TwitterDispatcher</a></dt>
<dd> </dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/master/notification/TwitterDispatcher.html#ACCESS_TOKEN_PROP">ACCESS_TOKEN_PROP</a></span> - Static variable in class org.taverna.server.master.notification.<a href="org/taverna/server/master/notification/TwitterDispatcher.html" title="class in org.taverna.server.master.notification">TwitterDispatcher</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/master/notification/TwitterDispatcher.html#ACCESS_TOKEN_PROP">ACCESS_TOKEN_PROP</a></span> - Static variable in class org.apache.taverna.server.master.notification.<a href="org/apache/taverna/server/master/notification/TwitterDispatcher.html" title="class in org.apache.taverna.server.master.notification">TwitterDispatcher</a></dt>
<dd> </dd>
-<dt><a href="org/taverna/server/master/rest/handler/AccessDeniedHandler.html" title="class in org.taverna.server.master.rest.handler"><span class="typeNameLink">AccessDeniedHandler</span></a> - Class in <a href="org/taverna/server/master/rest/handler/package-summary.html">org.taverna.server.master.rest.handler</a></dt>
+<dt><a href="org/apache/taverna/server/master/rest/handler/AccessDeniedHandler.html" title="class in org.apache.taverna.server.master.rest.handler"><span class="typeNameLink">AccessDeniedHandler</span></a> - Class in <a href="org/apache/taverna/server/master/rest/handler/package-summary.html">org.apache.taverna.server.master.rest.handler</a></dt>
<dd> </dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/master/rest/handler/AccessDeniedHandler.html#AccessDeniedHandler--">AccessDeniedHandler()</a></span> - Constructor for class org.taverna.server.master.rest.handler.<a href="org/taverna/server/master/rest/handler/AccessDeniedHandler.html" title="class in org.taverna.server.master.rest.handler">AccessDeniedHandler</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/master/rest/handler/AccessDeniedHandler.html#AccessDeniedHandler--">AccessDeniedHandler()</a></span> - Constructor for class org.apache.taverna.server.master.rest.handler.<a href="org/apache/taverna/server/master/rest/handler/AccessDeniedHandler.html" title="class in org.apache.taverna.server.master.rest.handler">AccessDeniedHandler</a></dt>
<dd> </dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/master/FileConcatenation.html#add-org.taverna.server.master.interfaces.File-">add(File)</a></span> - Method in class org.taverna.server.master.<a href="org/taverna/server/master/FileConcatenation.html" title="class in org.taverna.server.master">FileConcatenation</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/master/FileConcatenation.html#add-org.apache.taverna.server.master.interfaces.File-">add(File)</a></span> - Method in class org.apache.taverna.server.master.<a href="org/apache/taverna/server/master/FileConcatenation.html" title="class in org.apache.taverna.server.master">FileConcatenation</a></dt>
<dd> </dd>
<dt><span class="memberNameLink"><a href="org/apache/taverna/server/usagerecord/JobUsageRecord.html#addCharge-float-">addCharge(float)</a></span> - Method in class org.apache.taverna.server.usagerecord.<a href="org/apache/taverna/server/usagerecord/JobUsageRecord.html" title="class in org.apache.taverna.server.usagerecord">JobUsageRecord</a></dt>
<dd> </dd>
<dt><span class="memberNameLink"><a href="org/apache/taverna/server/usagerecord/JobUsageRecord.html#addCpuDuration-long-">addCpuDuration(long)</a></span> - Method in class org.apache.taverna.server.usagerecord.<a href="org/apache/taverna/server/usagerecord/JobUsageRecord.html" title="class in org.apache.taverna.server.usagerecord">JobUsageRecord</a></dt>
<dd> </dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/master/interfaces/TavernaSecurityContext.html#addCredential-org.taverna.server.master.common.Credential-">addCredential(Credential)</a></span> - Method in interface org.taverna.server.master.interfaces.<a href="org/taverna/server/master/interfaces/TavernaSecurityContext.html" title="interface in org.taverna.server.master.interfaces">TavernaSecurityContext</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/master/interfaces/TavernaSecurityContext.html#addCredential-org.apache.taverna.server.master.common.Credential-">addCredential(Credential)</a></span> - Method in interface org.apache.taverna.server.master.interfaces.<a href="org/apache/taverna/server/master/interfaces/TavernaSecurityContext.html" title="interface in org.apache.taverna.server.master.interfaces">TavernaSecurityContext</a></dt>
<dd>
<div class="block">Add a credential to the owned set or replaces the old version with the
new one.</div>
</dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/master/rest/TavernaServerSecurityREST.html#addCredential-org.taverna.server.master.rest.TavernaServerSecurityREST.CredentialHolder-javax.ws.rs.core.UriInfo-">addCredential(TavernaServerSecurityREST.CredentialHolder, UriInfo)</a></span> - Method in interface org.taverna.server.master.rest.<a href="org/taverna/server/master/rest/TavernaServerSecurityREST.html" title="interface in org.taverna.server.master.rest">TavernaServerSecurityREST</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/master/rest/TavernaServerSecurityREST.html#addCredential-org.apache.taverna.server.master.rest.TavernaServerSecurityREST.CredentialHolder-javax.ws.rs.core.UriInfo-">addCredential(TavernaServerSecurityREST.CredentialHolder, UriInfo)</a></span> - Method in interface org.apache.taverna.server.master.rest.<a href="org/apache/taverna/server/master/rest/TavernaServerSecurityREST.html" title="interface in org.apache.taverna.server.master.rest">TavernaServerSecurityREST</a></dt>
<dd>
<div class="block">Adds a new credential.</div>
</dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/master/worker/SecurityContextDelegate.html#addCredential-org.taverna.server.master.common.Credential-">addCredential(Credential)</a></span> - Method in class org.taverna.server.master.worker.<a href="org/taverna/server/master/worker/SecurityContextDelegate.html" title="class in org.taverna.server.master.worker">SecurityContextDelegate</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/master/worker/SecurityContextDelegate.html#addCredential-org.apache.taverna.server.master.common.Credential-">addCredential(Credential)</a></span> - Method in class org.apache.taverna.server.master.worker.<a href="org/apache/taverna/server/master/worker/SecurityContextDelegate.html" title="class in org.apache.taverna.server.master.worker">SecurityContextDelegate</a></dt>
<dd> </dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/master/worker/SecurityContextDelegate.html#addCredentialToKeystore-org.taverna.server.master.common.Credential-">addCredentialToKeystore(Credential)</a></span> - Method in class org.taverna.server.master.worker.<a href="org/taverna/server/master/worker/SecurityContextDelegate.html" title="class in org.taverna.server.master.worker">SecurityContextDelegate</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/master/worker/SecurityContextDelegate.html#addCredentialToKeystore-org.apache.taverna.server.master.common.Credential-">addCredentialToKeystore(Credential)</a></span> - Method in class org.apache.taverna.server.master.worker.<a href="org/apache/taverna/server/master/worker/SecurityContextDelegate.html" title="class in org.apache.taverna.server.master.worker">SecurityContextDelegate</a></dt>
<dd>
<div class="block">Adds a credential to the current keystore.</div>
</dd>
@@ -148,40 +148,40 @@
<dd> </dd>
<dt><span class="memberNameLink"><a href="org/apache/taverna/server/usagerecord/JobUsageRecord.html#addDuration-long-java.lang.String-">addDuration(long, String)</a></span> - Method in class org.apache.taverna.server.usagerecord.<a href="org/apache/taverna/server/usagerecord/JobUsageRecord.html" title="class in org.apache.taverna.server.usagerecord">JobUsageRecord</a></dt>
<dd> </dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/master/InteractionFeed.html#addEntry-org.apache.abdera.model.Entry-">addEntry(Entry)</a></span> - Method in class org.taverna.server.master.<a href="org/taverna/server/master/InteractionFeed.html" title="class in org.taverna.server.master">InteractionFeed</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/master/InteractionFeed.html#addEntry-org.apache.abdera.model.Entry-">addEntry(Entry)</a></span> - Method in class org.apache.taverna.server.master.<a href="org/apache/taverna/server/master/InteractionFeed.html" title="class in org.apache.taverna.server.master">InteractionFeed</a></dt>
<dd> </dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/master/rest/InteractionFeedREST.html#addEntry-org.apache.abdera.model.Entry-">addEntry(Entry)</a></span> - Method in interface org.taverna.server.master.rest.<a href="org/taverna/server/master/rest/InteractionFeedREST.html" title="interface in org.taverna.server.master.rest">InteractionFeedREST</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/master/rest/InteractionFeedREST.html#addEntry-org.apache.abdera.model.Entry-">addEntry(Entry)</a></span> - Method in interface org.apache.taverna.server.master.rest.<a href="org/apache/taverna/server/master/rest/InteractionFeedREST.html" title="interface in org.apache.taverna.server.master.rest">InteractionFeedREST</a></dt>
<dd>
<div class="block">Adds an entry to this ATOM feed.</div>
</dd>
<dt><span class="memberNameLink"><a href="org/apache/taverna/server/usagerecord/JobUsageRecord.html#addHost-java.lang.String-">addHost(String)</a></span> - Method in class org.apache.taverna.server.usagerecord.<a href="org/apache/taverna/server/usagerecord/JobUsageRecord.html" title="class in org.apache.taverna.server.usagerecord">JobUsageRecord</a></dt>
<dd> </dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/master/identity/WorkflowInternalAuthProvider.html#additionalAuthenticationChecks-org.springframework.security.core.userdetails.UserDetails-java.lang.Object-java.lang.Object-">additionalAuthenticationChecks(UserDetails, Object, Object)</a></span> - Method in class org.taverna.server.master.identity.<a href="org/taverna/server/master/identity/WorkflowInternalAuthProvider.html" title="class in org.taverna.server.master.identity">WorkflowInternalAuthProvider</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/master/identity/WorkflowInternalAuthProvider.html#additionalAuthenticationChecks-org.springframework.security.core.userdetails.UserDetails-java.lang.Object-java.lang.Object-">additionalAuthenticationChecks(UserDetails, Object, Object)</a></span> - Method in class org.apache.taverna.server.master.identity.<a href="org/apache/taverna/server/master/identity/WorkflowInternalAuthProvider.html" title="class in org.apache.taverna.server.master.identity">WorkflowInternalAuthProvider</a></dt>
<dd>
<div class="block">Check that the authentication request is actually valid for the given
user record.</div>
</dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/master/identity/WorkflowInternalAuthProvider.html#additionalAuthenticationChecks-org.springframework.security.core.userdetails.UserDetails-org.springframework.security.authentication.UsernamePasswordAuthenticationToken-">additionalAuthenticationChecks(UserDetails, UsernamePasswordAuthenticationToken)</a></span> - Method in class org.taverna.server.master.identity.<a href="org/taverna/server/master/identity/WorkflowInternalAuthProvider.html" title="class in org.taverna.server.master.identity">WorkflowInternalAuthProvider</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/master/identity/WorkflowInternalAuthProvider.html#additionalAuthenticationChecks-org.springframework.security.core.userdetails.UserDetails-org.springframework.security.authentication.UsernamePasswordAuthenticationToken-">additionalAuthenticationChecks(UserDetails, UsernamePasswordAuthenticationToken)</a></span> - Method in class org.apache.taverna.server.master.identity.<a href="org/apache/taverna/server/master/identity/WorkflowInternalAuthProvider.html" title="class in org.apache.taverna.server.master.identity">WorkflowInternalAuthProvider</a></dt>
<dd> </dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/master/worker/SecurityContextDelegate.html#addKeypairToKeystore-java.lang.String-org.taverna.server.master.common.Credential-">addKeypairToKeystore(String, Credential)</a></span> - Method in class org.taverna.server.master.worker.<a href="org/taverna/server/master/worker/SecurityContextDelegate.html" title="class in org.taverna.server.master.worker">SecurityContextDelegate</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/master/worker/SecurityContextDelegate.html#addKeypairToKeystore-java.lang.String-org.apache.taverna.server.master.common.Credential-">addKeypairToKeystore(String, Credential)</a></span> - Method in class org.apache.taverna.server.master.worker.<a href="org/apache/taverna/server/master/worker/SecurityContextDelegate.html" title="class in org.apache.taverna.server.master.worker">SecurityContextDelegate</a></dt>
<dd>
<div class="block">Adds a credential to the current keystore.</div>
</dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/localworker/impl/LocalWorker.html#addListener-org.taverna.server.localworker.remote.RemoteListener-">addListener(RemoteListener)</a></span> - Method in class org.taverna.server.localworker.impl.<a href="org/taverna/server/localworker/impl/LocalWorker.html" title="class in org.taverna.server.localworker.impl">LocalWorker</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/localworker/impl/LocalWorker.html#addListener-org.apache.taverna.server.localworker.remote.RemoteListener-">addListener(RemoteListener)</a></span> - Method in class org.apache.taverna.server.localworker.impl.<a href="org/apache/taverna/server/localworker/impl/LocalWorker.html" title="class in org.apache.taverna.server.localworker.impl">LocalWorker</a></dt>
<dd> </dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/localworker/remote/RemoteSingleRun.html#addListener-org.taverna.server.localworker.remote.RemoteListener-">addListener(RemoteListener)</a></span> - Method in interface org.taverna.server.localworker.remote.<a href="org/taverna/server/localworker/remote/RemoteSingleRun.html" title="interface in org.taverna.server.localworker.remote">RemoteSingleRun</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/localworker/remote/RemoteSingleRun.html#addListener-org.apache.taverna.server.localworker.remote.RemoteListener-">addListener(RemoteListener)</a></span> - Method in interface org.apache.taverna.server.localworker.remote.<a href="org/apache/taverna/server/localworker/remote/RemoteSingleRun.html" title="interface in org.apache.taverna.server.localworker.remote">RemoteSingleRun</a></dt>
<dd>
<div class="block">Add a listener to the run.</div>
</dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/master/interfaces/TavernaRun.html#addListener-org.taverna.server.master.interfaces.Listener-">addListener(Listener)</a></span> - Method in interface org.taverna.server.master.interfaces.<a href="org/taverna/server/master/interfaces/TavernaRun.html" title="interface in org.taverna.server.master.interfaces">TavernaRun</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/master/interfaces/TavernaRun.html#addListener-org.apache.taverna.server.master.interfaces.Listener-">addListener(Listener)</a></span> - Method in interface org.apache.taverna.server.master.interfaces.<a href="org/apache/taverna/server/master/interfaces/TavernaRun.html" title="interface in org.apache.taverna.server.master.interfaces">TavernaRun</a></dt>
<dd>
<div class="block">Add a listener to the run.</div>
</dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/master/rest/TavernaServerListenersREST.html#addListener-org.taverna.server.master.rest.ListenerDefinition-javax.ws.rs.core.UriInfo-">addListener(ListenerDefinition, UriInfo)</a></span> - Method in interface org.taverna.server.master.rest.<a href="org/taverna/server/master/rest/TavernaServerListenersREST.html" title="interface in org.taverna.server.master.rest">TavernaServerListenersREST</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/master/rest/TavernaServerListenersREST.html#addListener-org.apache.taverna.server.master.rest.ListenerDefinition-javax.ws.rs.core.UriInfo-">addListener(ListenerDefinition, UriInfo)</a></span> - Method in interface org.apache.taverna.server.master.rest.<a href="org/apache/taverna/server/master/rest/TavernaServerListenersREST.html" title="interface in org.apache.taverna.server.master.rest">TavernaServerListenersREST</a></dt>
<dd>
<div class="block">Add a new event listener to the named workflow run.</div>
</dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/master/worker/RemoteRunDelegate.html#addListener-org.taverna.server.master.interfaces.Listener-">addListener(Listener)</a></span> - Method in class org.taverna.server.master.worker.<a href="org/taverna/server/master/worker/RemoteRunDelegate.html" title="class in org.taverna.server.master.worker">RemoteRunDelegate</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/master/worker/RemoteRunDelegate.html#addListener-org.apache.taverna.server.master.interfaces.Listener-">addListener(Listener)</a></span> - Method in class org.apache.taverna.server.master.worker.<a href="org/apache/taverna/server/master/worker/RemoteRunDelegate.html" title="class in org.apache.taverna.server.master.worker">RemoteRunDelegate</a></dt>
<dd> </dd>
<dt><span class="memberNameLink"><a href="org/apache/taverna/server/usagerecord/JobUsageRecord.html#addMachine-java.lang.String-">addMachine(String)</a></span> - Method in class org.apache.taverna.server.usagerecord.<a href="org/apache/taverna/server/usagerecord/JobUsageRecord.html" title="class in org.apache.taverna.server.usagerecord">JobUsageRecord</a></dt>
<dd> </dd>
@@ -191,11 +191,11 @@
<dd> </dd>
<dt><span class="memberNameLink"><a href="org/apache/taverna/server/usagerecord/JobUsageRecord.html#addNodeCount-int-">addNodeCount(int)</a></span> - Method in class org.apache.taverna.server.usagerecord.<a href="org/apache/taverna/server/usagerecord/JobUsageRecord.html" title="class in org.apache.taverna.server.usagerecord">JobUsageRecord</a></dt>
<dd> </dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/port_description/InputDescription.html#addPort-java.lang.String-">addPort(String)</a></span> - Method in class org.taverna.server.port_description.<a href="org/taverna/server/port_description/InputDescription.html" title="class in org.taverna.server.port_description">InputDescription</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/port_description/InputDescription.html#addPort-java.lang.String-">addPort(String)</a></span> - Method in class org.apache.taverna.server.port_description.<a href="org/apache/taverna/server/port_description/InputDescription.html" title="class in org.apache.taverna.server.port_description">InputDescription</a></dt>
<dd>
<div class="block">Add an input port to the list of ports.</div>
</dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/port_description/OutputDescription.html#addPort-java.lang.String-">addPort(String)</a></span> - Method in class org.taverna.server.port_description.<a href="org/taverna/server/port_description/OutputDescription.html" title="class in org.taverna.server.port_description">OutputDescription</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/port_description/OutputDescription.html#addPort-java.lang.String-">addPort(String)</a></span> - Method in class org.apache.taverna.server.port_description.<a href="org/apache/taverna/server/port_description/OutputDescription.html" title="class in org.apache.taverna.server.port_description">OutputDescription</a></dt>
<dd>
<div class="block">Add an output port to the list of ports.</div>
</dd>
@@ -211,16 +211,16 @@
<dd> </dd>
<dt><span class="memberNameLink"><a href="org/apache/taverna/server/usagerecord/JobUsageRecord.html#addResource-java.lang.String-java.lang.String-">addResource(String, String)</a></span> - Method in class org.apache.taverna.server.usagerecord.<a href="org/apache/taverna/server/usagerecord/JobUsageRecord.html" title="class in org.apache.taverna.server.usagerecord">JobUsageRecord</a></dt>
<dd> </dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/master/interaction/InteractionFeedSupport.html#addRunFeedEntry-org.taverna.server.master.interfaces.TavernaRun-org.apache.abdera.model.Entry-">addRunFeedEntry(TavernaRun, Entry)</a></span> - Method in class org.taverna.server.master.interaction.<a href="org/taverna/server/master/interaction/InteractionFeedSupport.html" title="class in org.taverna.server.master.interaction">InteractionFeedSupport</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/master/interaction/InteractionFeedSupport.html#addRunFeedEntry-org.apache.taverna.server.master.interfaces.TavernaRun-org.apache.abdera.model.Entry-">addRunFeedEntry(TavernaRun, Entry)</a></span> - Method in class org.apache.taverna.server.master.interaction.<a href="org/apache/taverna/server/master/interaction/InteractionFeedSupport.html" title="class in org.apache.taverna.server.master.interaction">InteractionFeedSupport</a></dt>
<dd>
<div class="block">Given a partial feed entry, store a complete feed entry in the filesystem
for a particular run.</div>
</dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/master/soap/TavernaServerSOAP.html#addRunListener-java.lang.String-java.lang.String-java.lang.String-">addRunListener(String, String, String)</a></span> - Method in interface org.taverna.server.master.soap.<a href="org/taverna/server/master/soap/TavernaServerSOAP.html" title="interface in org.taverna.server.master.soap">TavernaServerSOAP</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/master/soap/TavernaServerSOAP.html#addRunListener-java.lang.String-java.lang.String-java.lang.String-">addRunListener(String, String, String)</a></span> - Method in interface org.apache.taverna.server.master.soap.<a href="org/apache/taverna/server/master/soap/TavernaServerSOAP.html" title="interface in org.apache.taverna.server.master.soap">TavernaServerSOAP</a></dt>
<dd>
<div class="block">Adds an event listener to the run.</div>
</dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/master/TavernaServer.html#addRunListener-java.lang.String-java.lang.String-java.lang.String-">addRunListener(String, String, String)</a></span> - Method in class org.taverna.server.master.<a href="org/taverna/server/master/TavernaServer.html" title="class in org.taverna.server.master">TavernaServer</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/master/TavernaServer.html#addRunListener-java.lang.String-java.lang.String-java.lang.String-">addRunListener(String, String, String)</a></span> - Method in class org.apache.taverna.server.master.<a href="org/apache/taverna/server/master/TavernaServer.html" title="class in org.apache.taverna.server.master">TavernaServer</a></dt>
<dd> </dd>
<dt><span class="memberNameLink"><a href="org/apache/taverna/server/usagerecord/JobUsageRecord.html#addServiceLevel-java.lang.String-">addServiceLevel(String)</a></span> - Method in class org.apache.taverna.server.usagerecord.<a href="org/apache/taverna/server/usagerecord/JobUsageRecord.html" title="class in org.apache.taverna.server.usagerecord">JobUsageRecord</a></dt>
<dd> </dd>
@@ -232,67 +232,67 @@
<dd> </dd>
<dt><span class="memberNameLink"><a href="org/apache/taverna/server/usagerecord/JobUsageRecord.html#addTimestamp-java.util.Date-java.lang.String-">addTimestamp(Date, String)</a></span> - Method in class org.apache.taverna.server.usagerecord.<a href="org/apache/taverna/server/usagerecord/JobUsageRecord.html" title="class in org.apache.taverna.server.usagerecord">JobUsageRecord</a></dt>
<dd> </dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/master/rest/TavernaServerSecurityREST.html#addTrust-org.taverna.server.master.common.Trust-javax.ws.rs.core.UriInfo-">addTrust(Trust, UriInfo)</a></span> - Method in interface org.taverna.server.master.rest.<a href="org/taverna/server/master/rest/TavernaServerSecurityREST.html" title="interface in org.taverna.server.master.rest">TavernaServerSecurityREST</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/master/rest/TavernaServerSecurityREST.html#addTrust-org.apache.taverna.server.master.common.Trust-javax.ws.rs.core.UriInfo-">addTrust(Trust, UriInfo)</a></span> - Method in interface org.apache.taverna.server.master.rest.<a href="org/apache/taverna/server/master/rest/TavernaServerSecurityREST.html" title="interface in org.apache.taverna.server.master.rest">TavernaServerSecurityREST</a></dt>
<dd>
<div class="block">Adds a new trusted identity.</div>
</dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/master/interfaces/TavernaSecurityContext.html#addTrusted-org.taverna.server.master.common.Trust-">addTrusted(Trust)</a></span> - Method in interface org.taverna.server.master.interfaces.<a href="org/taverna/server/master/interfaces/TavernaSecurityContext.html" title="interface in org.taverna.server.master.interfaces">TavernaSecurityContext</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/master/interfaces/TavernaSecurityContext.html#addTrusted-org.apache.taverna.server.master.common.Trust-">addTrusted(Trust)</a></span> - Method in interface org.apache.taverna.server.master.interfaces.<a href="org/apache/taverna/server/master/interfaces/TavernaSecurityContext.html" title="interface in org.apache.taverna.server.master.interfaces">TavernaSecurityContext</a></dt>
<dd>
<div class="block">Add an identity to the trusted set.</div>
</dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/master/worker/SecurityContextDelegate.html#addTrusted-org.taverna.server.master.common.Trust-">addTrusted(Trust)</a></span> - Method in class org.taverna.server.master.worker.<a href="org/taverna/server/master/worker/SecurityContextDelegate.html" title="class in org.taverna.server.master.worker">SecurityContextDelegate</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/master/worker/SecurityContextDelegate.html#addTrusted-org.apache.taverna.server.master.common.Trust-">addTrusted(Trust)</a></span> - Method in class org.apache.taverna.server.master.worker.<a href="org/apache/taverna/server/master/worker/SecurityContextDelegate.html" title="class in org.apache.taverna.server.master.worker">SecurityContextDelegate</a></dt>
<dd> </dd>
-<dt><span class="memberNameLink"><a href="org/apache/taverna/server/usagerecord/JobUsageRecord.html#addUser-java.lang.String-java.lang.String-">addUser(String, String)</a></span> - Method in class org.apache.taverna.server.usagerecord.<a href="org/apache/taverna/server/usagerecord/JobUsageRecord.html" title="class in org.apache.taverna.server.usagerecord">JobUsageRecord</a></dt>
-<dd> </dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/master/identity/UserStore.html#addUser-java.lang.String-java.lang.String-boolean-">addUser(String, String, boolean)</a></span> - Method in class org.taverna.server.master.identity.<a href="org/taverna/server/master/identity/UserStore.html" title="class in org.taverna.server.master.identity">UserStore</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/master/identity/UserStore.html#addUser-java.lang.String-java.lang.String-boolean-">addUser(String, String, boolean)</a></span> - Method in class org.apache.taverna.server.master.identity.<a href="org/apache/taverna/server/master/identity/UserStore.html" title="class in org.apache.taverna.server.master.identity">UserStore</a></dt>
<dd> </dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/master/identity/UserStoreAPI.html#addUser-java.lang.String-java.lang.String-boolean-">addUser(String, String, boolean)</a></span> - Method in interface org.taverna.server.master.identity.<a href="org/taverna/server/master/identity/UserStoreAPI.html" title="interface in org.taverna.server.master.identity">UserStoreAPI</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/master/identity/UserStoreAPI.html#addUser-java.lang.String-java.lang.String-boolean-">addUser(String, String, boolean)</a></span> - Method in interface org.apache.taverna.server.master.identity.<a href="org/apache/taverna/server/master/identity/UserStoreAPI.html" title="interface in org.apache.taverna.server.master.identity">UserStoreAPI</a></dt>
<dd>
<div class="block">Create a new user account; the account will be disabled and
non-administrative by default.</div>
</dd>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/usagerecord/JobUsageRecord.html#addUser-java.lang.String-java.lang.String-">addUser(String, String)</a></span> - Method in class org.apache.taverna.server.usagerecord.<a href="org/apache/taverna/server/usagerecord/JobUsageRecord.html" title="class in org.apache.taverna.server.usagerecord">JobUsageRecord</a></dt>
+<dd> </dd>
<dt><span class="memberNameLink"><a href="org/apache/taverna/server/usagerecord/JobUsageRecord.html#addWallDuration-long-">addWallDuration(long)</a></span> - Method in class org.apache.taverna.server.usagerecord.<a href="org/apache/taverna/server/usagerecord/JobUsageRecord.html" title="class in org.apache.taverna.server.usagerecord">JobUsageRecord</a></dt>
<dd> </dd>
-<dt><a href="org/taverna/server/master/admin/Admin.html" title="interface in org.taverna.server.master.admin"><span class="typeNameLink">Admin</span></a> - Interface in <a href="org/taverna/server/master/admin/package-summary.html">org.taverna.server.master.admin</a></dt>
+<dt><a href="org/apache/taverna/server/master/admin/Admin.html" title="interface in org.apache.taverna.server.master.admin"><span class="typeNameLink">Admin</span></a> - Interface in <a href="org/apache/taverna/server/master/admin/package-summary.html">org.apache.taverna.server.master.admin</a></dt>
<dd>
<div class="block">The administration interface for Taverna Server.</div>
</dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/master/admin/Admin.UserDesc.html#admin">admin</a></span> - Variable in class org.taverna.server.master.admin.<a href="org/taverna/server/master/admin/Admin.UserDesc.html" title="class in org.taverna.server.master.admin">Admin.UserDesc</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/master/admin/Admin.UserDesc.html#admin">admin</a></span> - Variable in class org.apache.taverna.server.master.admin.<a href="org/apache/taverna/server/master/admin/Admin.UserDesc.html" title="class in org.apache.taverna.server.master.admin">Admin.UserDesc</a></dt>
<dd> </dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/master/common/Namespaces.html#ADMIN">ADMIN</a></span> - Static variable in interface org.taverna.server.master.common.<a href="org/taverna/server/master/common/Namespaces.html" title="interface in org.taverna.server.master.common">Namespaces</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/master/common/Namespaces.html#ADMIN">ADMIN</a></span> - Static variable in interface org.apache.taverna.server.master.common.<a href="org/apache/taverna/server/master/common/Namespaces.html" title="interface in org.apache.taverna.server.master.common">Namespaces</a></dt>
<dd> </dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/master/common/Roles.html#ADMIN">ADMIN</a></span> - Static variable in interface org.taverna.server.master.common.<a href="org/taverna/server/master/common/Roles.html" title="interface in org.taverna.server.master.common">Roles</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/master/common/Roles.html#ADMIN">ADMIN</a></span> - Static variable in interface org.apache.taverna.server.master.common.<a href="org/apache/taverna/server/master/common/Roles.html" title="interface in org.apache.taverna.server.master.common">Roles</a></dt>
<dd>
<div class="block">The role of an administrator.</div>
</dd>
-<dt><a href="org/taverna/server/master/admin/Admin.AdminDescription.html" title="class in org.taverna.server.master.admin"><span class="typeNameLink">Admin.AdminDescription</span></a> - Class in <a href="org/taverna/server/master/admin/package-summary.html">org.taverna.server.master.admin</a></dt>
+<dt><a href="org/apache/taverna/server/master/admin/Admin.AdminDescription.html" title="class in org.apache.taverna.server.master.admin"><span class="typeNameLink">Admin.AdminDescription</span></a> - Class in <a href="org/apache/taverna/server/master/admin/package-summary.html">org.apache.taverna.server.master.admin</a></dt>
<dd>
<div class="block">The description of what properties are supported by the administration
interface.</div>
</dd>
-<dt><a href="org/taverna/server/master/admin/Admin.StringList.html" title="class in org.taverna.server.master.admin"><span class="typeNameLink">Admin.StringList</span></a> - Class in <a href="org/taverna/server/master/admin/package-summary.html">org.taverna.server.master.admin</a></dt>
+<dt><a href="org/apache/taverna/server/master/admin/Admin.StringList.html" title="class in org.apache.taverna.server.master.admin"><span class="typeNameLink">Admin.StringList</span></a> - Class in <a href="org/apache/taverna/server/master/admin/package-summary.html">org.apache.taverna.server.master.admin</a></dt>
<dd>
<div class="block">A list of strings, as XML.</div>
</dd>
-<dt><a href="org/taverna/server/master/admin/Admin.URList.html" title="class in org.taverna.server.master.admin"><span class="typeNameLink">Admin.URList</span></a> - Class in <a href="org/taverna/server/master/admin/package-summary.html">org.taverna.server.master.admin</a></dt>
+<dt><a href="org/apache/taverna/server/master/admin/Admin.URList.html" title="class in org.apache.taverna.server.master.admin"><span class="typeNameLink">Admin.URList</span></a> - Class in <a href="org/apache/taverna/server/master/admin/package-summary.html">org.apache.taverna.server.master.admin</a></dt>
<dd>
<div class="block">A list of usage records, as XML.</div>
</dd>
-<dt><a href="org/taverna/server/master/admin/Admin.UserDesc.html" title="class in org.taverna.server.master.admin"><span class="typeNameLink">Admin.UserDesc</span></a> - Class in <a href="org/taverna/server/master/admin/package-summary.html">org.taverna.server.master.admin</a></dt>
+<dt><a href="org/apache/taverna/server/master/admin/Admin.UserDesc.html" title="class in org.apache.taverna.server.master.admin"><span class="typeNameLink">Admin.UserDesc</span></a> - Class in <a href="org/apache/taverna/server/master/admin/package-summary.html">org.apache.taverna.server.master.admin</a></dt>
<dd> </dd>
-<dt><a href="org/taverna/server/master/admin/Admin.UserList.html" title="class in org.taverna.server.master.admin"><span class="typeNameLink">Admin.UserList</span></a> - Class in <a href="org/taverna/server/master/admin/package-summary.html">org.taverna.server.master.admin</a></dt>
+<dt><a href="org/apache/taverna/server/master/admin/Admin.UserList.html" title="class in org.apache.taverna.server.master.admin"><span class="typeNameLink">Admin.UserList</span></a> - Class in <a href="org/apache/taverna/server/master/admin/package-summary.html">org.apache.taverna.server.master.admin</a></dt>
<dd>
<div class="block">A list of users, as XML.</div>
</dd>
-<dt><a href="org/taverna/server/master/admin/AdminBean.html" title="class in org.taverna.server.master.admin"><span class="typeNameLink">AdminBean</span></a> - Class in <a href="org/taverna/server/master/admin/package-summary.html">org.taverna.server.master.admin</a></dt>
+<dt><a href="org/apache/taverna/server/master/admin/AdminBean.html" title="class in org.apache.taverna.server.master.admin"><span class="typeNameLink">AdminBean</span></a> - Class in <a href="org/apache/taverna/server/master/admin/package-summary.html">org.apache.taverna.server.master.admin</a></dt>
<dd>
<div class="block">The administration interface to Taverna Server.</div>
</dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/master/admin/AdminBean.html#AdminBean--">AdminBean()</a></span> - Constructor for class org.taverna.server.master.admin.<a href="org/taverna/server/master/admin/AdminBean.html" title="class in org.taverna.server.master.admin">AdminBean</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/master/admin/AdminBean.html#AdminBean--">AdminBean()</a></span> - Constructor for class org.apache.taverna.server.master.admin.<a href="org/apache/taverna/server/master/admin/AdminBean.html" title="class in org.apache.taverna.server.master.admin">AdminBean</a></dt>
<dd> </dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/master/admin/Admin.AdminDescription.html#AdminDescription--">AdminDescription()</a></span> - Constructor for class org.taverna.server.master.admin.<a href="org/taverna/server/master/admin/Admin.AdminDescription.html" title="class in org.taverna.server.master.admin">Admin.AdminDescription</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/master/admin/Admin.AdminDescription.html#AdminDescription--">AdminDescription()</a></span> - Constructor for class org.apache.taverna.server.master.admin.<a href="org/apache/taverna/server/master/admin/Admin.AdminDescription.html" title="class in org.apache.taverna.server.master.admin">Admin.AdminDescription</a></dt>
<dd> </dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/master/admin/Admin.AdminDescription.html#AdminDescription-javax.ws.rs.core.UriInfo-">AdminDescription(UriInfo)</a></span> - Constructor for class org.taverna.server.master.admin.<a href="org/taverna/server/master/admin/Admin.AdminDescription.html" title="class in org.taverna.server.master.admin">Admin.AdminDescription</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/master/admin/Admin.AdminDescription.html#AdminDescription-javax.ws.rs.core.UriInfo-">AdminDescription(UriInfo)</a></span> - Constructor for class org.apache.taverna.server.master.admin.<a href="org/apache/taverna/server/master/admin/Admin.AdminDescription.html" title="class in org.apache.taverna.server.master.admin">Admin.AdminDescription</a></dt>
<dd> </dd>
<dt><span class="memberNameLink"><a href="org/apache/taverna/server/usagerecord/xml/dsig/CanonicalizationMethodType.html#algorithm">algorithm</a></span> - Variable in class org.apache.taverna.server.usagerecord.xml.dsig.<a href="org/apache/taverna/server/usagerecord/xml/dsig/CanonicalizationMethodType.html" title="class in org.apache.taverna.server.usagerecord.xml.dsig">CanonicalizationMethodType</a></dt>
<dd> </dd>
@@ -302,47 +302,47 @@
<dd> </dd>
<dt><span class="memberNameLink"><a href="org/apache/taverna/server/usagerecord/xml/dsig/TransformType.html#algorithm">algorithm</a></span> - Variable in class org.apache.taverna.server.usagerecord.xml.dsig.<a href="org/apache/taverna/server/usagerecord/xml/dsig/TransformType.html" title="class in org.apache.taverna.server.usagerecord.xml.dsig">TransformType</a></dt>
<dd> </dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/master/admin/Admin.AdminDescription.html#allowNew">allowNew</a></span> - Variable in class org.taverna.server.master.admin.<a href="org/taverna/server/master/admin/Admin.AdminDescription.html" title="class in org.taverna.server.master.admin">Admin.AdminDescription</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/master/admin/Admin.AdminDescription.html#allowNew">allowNew</a></span> - Variable in class org.apache.taverna.server.master.admin.<a href="org/apache/taverna/server/master/admin/Admin.AdminDescription.html" title="class in org.apache.taverna.server.master.admin">Admin.AdminDescription</a></dt>
<dd> </dd>
<dt><span class="memberNameLink"><a href="org/apache/taverna/server/client/generic/Workflow.html#any">any</a></span> - Variable in class org.apache.taverna.server.client.generic.<a href="org/apache/taverna/server/client/generic/Workflow.html" title="class in org.apache.taverna.server.client.generic">Workflow</a></dt>
<dd> </dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/localworker/impl/FileDelegate.html#appendContents-byte:A-">appendContents(byte[])</a></span> - Method in class org.taverna.server.localworker.impl.<a href="org/taverna/server/localworker/impl/FileDelegate.html" title="class in org.taverna.server.localworker.impl">FileDelegate</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/localworker/impl/FileDelegate.html#appendContents-byte:A-">appendContents(byte[])</a></span> - Method in class org.apache.taverna.server.localworker.impl.<a href="org/apache/taverna/server/localworker/impl/FileDelegate.html" title="class in org.apache.taverna.server.localworker.impl">FileDelegate</a></dt>
<dd> </dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/localworker/remote/RemoteFile.html#appendContents-byte:A-">appendContents(byte[])</a></span> - Method in interface org.taverna.server.localworker.remote.<a href="org/taverna/server/localworker/remote/RemoteFile.html" title="interface in org.taverna.server.localworker.remote">RemoteFile</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/localworker/remote/RemoteFile.html#appendContents-byte:A-">appendContents(byte[])</a></span> - Method in interface org.apache.taverna.server.localworker.remote.<a href="org/apache/taverna/server/localworker/remote/RemoteFile.html" title="interface in org.apache.taverna.server.localworker.remote">RemoteFile</a></dt>
<dd>
<div class="block">Append the data to the file.</div>
</dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/master/interfaces/File.html#appendContents-byte:A-">appendContents(byte[])</a></span> - Method in interface org.taverna.server.master.interfaces.<a href="org/taverna/server/master/interfaces/File.html" title="interface in org.taverna.server.master.interfaces">File</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/master/interfaces/File.html#appendContents-byte:A-">appendContents(byte[])</a></span> - Method in interface org.apache.taverna.server.master.interfaces.<a href="org/apache/taverna/server/master/interfaces/File.html" title="interface in org.apache.taverna.server.master.interfaces">File</a></dt>
<dd>
<div class="block">Append the data to the file.</div>
</dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/master/api/ContentTypes.html#APPLICATION_ZIP_TYPE">APPLICATION_ZIP_TYPE</a></span> - Static variable in interface org.taverna.server.master.api.<a href="org/taverna/server/master/api/ContentTypes.html" title="interface in org.taverna.server.master.api">ContentTypes</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/master/api/ContentTypes.html#APPLICATION_ZIP_TYPE">APPLICATION_ZIP_TYPE</a></span> - Static variable in interface org.apache.taverna.server.master.api.<a href="org/apache/taverna/server/master/api/ContentTypes.html" title="interface in org.apache.taverna.server.master.api">ContentTypes</a></dt>
<dd>
<div class="block">"application/zip"</div>
</dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/master/rest/TavernaServerInputREST.InDesc.html#assignment">assignment</a></span> - Variable in class org.taverna.server.master.rest.<a href="org/taverna/server/master/rest/TavernaServerInputREST.InDesc.html" title="class in org.taverna.server.master.rest">TavernaServerInputREST.InDesc</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/master/rest/TavernaServerInputREST.InDesc.html#assignment">assignment</a></span> - Variable in class org.apache.taverna.server.master.rest.<a href="org/apache/taverna/server/master/rest/TavernaServerInputREST.InDesc.html" title="class in org.apache.taverna.server.master.rest">TavernaServerInputREST.InDesc</a></dt>
<dd>
<div class="block">The assignment of input values to the port.</div>
</dd>
-<dt><a href="org/taverna/server/master/notification/atom/AtomFeed.html" title="class in org.taverna.server.master.notification.atom"><span class="typeNameLink">AtomFeed</span></a> - Class in <a href="org/taverna/server/master/notification/atom/package-summary.html">org.taverna.server.master.notification.atom</a></dt>
+<dt><a href="org/apache/taverna/server/master/notification/atom/AtomFeed.html" title="class in org.apache.taverna.server.master.notification.atom"><span class="typeNameLink">AtomFeed</span></a> - Class in <a href="org/apache/taverna/server/master/notification/atom/package-summary.html">org.apache.taverna.server.master.notification.atom</a></dt>
<dd>
<div class="block">Simple REST handler that allows an Atom feed to be served up of events
generated by workflow runs.</div>
</dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/master/notification/atom/AtomFeed.html#AtomFeed--">AtomFeed()</a></span> - Constructor for class org.taverna.server.master.notification.atom.<a href="org/taverna/server/master/notification/atom/AtomFeed.html" title="class in org.taverna.server.master.notification.atom">AtomFeed</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/master/notification/atom/AtomFeed.html#AtomFeed--">AtomFeed()</a></span> - Constructor for class org.apache.taverna.server.master.notification.atom.<a href="org/apache/taverna/server/master/notification/atom/AtomFeed.html" title="class in org.apache.taverna.server.master.notification.atom">AtomFeed</a></dt>
<dd> </dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/master/identity/StrippedDownAuthProvider.html#authenticate-org.springframework.security.core.Authentication-">authenticate(Authentication)</a></span> - Method in class org.taverna.server.master.identity.<a href="org/taverna/server/master/identity/StrippedDownAuthProvider.html" title="class in org.taverna.server.master.identity">StrippedDownAuthProvider</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/master/identity/StrippedDownAuthProvider.html#authenticate-org.springframework.security.core.Authentication-">authenticate(Authentication)</a></span> - Method in class org.apache.taverna.server.master.identity.<a href="org/apache/taverna/server/master/identity/StrippedDownAuthProvider.html" title="class in org.apache.taverna.server.master.identity">StrippedDownAuthProvider</a></dt>
<dd> </dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/master/defaults/Default.html#AUTHORITY_PREFIX">AUTHORITY_PREFIX</a></span> - Static variable in interface org.taverna.server.master.defaults.<a href="org/taverna/server/master/defaults/Default.html" title="interface in org.taverna.server.master.defaults">Default</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/master/defaults/Default.html#AUTHORITY_PREFIX">AUTHORITY_PREFIX</a></span> - Static variable in interface org.apache.taverna.server.master.defaults.<a href="org/apache/taverna/server/master/defaults/Default.html" title="interface in org.apache.taverna.server.master.defaults">Default</a></dt>
<dd>
<div class="block">The default value of the <tt>prefix</tt> property.</div>
</dd>
-<dt><a href="org/taverna/server/master/identity/AuthorityDerivedIDMapper.html" title="class in org.taverna.server.master.identity"><span class="typeNameLink">AuthorityDerivedIDMapper</span></a> - Class in <a href="org/taverna/server/master/identity/package-summary.html">org.taverna.server.master.identity</a></dt>
+<dt><a href="org/apache/taverna/server/master/identity/AuthorityDerivedIDMapper.html" title="class in org.apache.taverna.server.master.identity"><span class="typeNameLink">AuthorityDerivedIDMapper</span></a> - Class in <a href="org/apache/taverna/server/master/identity/package-summary.html">org.apache.taverna.server.master.identity</a></dt>
<dd>
<div class="block">Extracts the local user id from the set of Spring Security authorities
granted to the current user.</div>
</dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/master/identity/AuthorityDerivedIDMapper.html#AuthorityDerivedIDMapper--">AuthorityDerivedIDMapper()</a></span> - Constructor for class org.taverna.server.master.identity.<a href="org/taverna/server/master/identity/AuthorityDerivedIDMapper.html" title="class in org.taverna.server.master.identity">AuthorityDerivedIDMapper</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/master/identity/AuthorityDerivedIDMapper.html#AuthorityDerivedIDMapper--">AuthorityDerivedIDMapper()</a></span> - Constructor for class org.apache.taverna.server.master.identity.<a href="org/apache/taverna/server/master/identity/AuthorityDerivedIDMapper.html" title="class in org.apache.taverna.server.master.identity">AuthorityDerivedIDMapper</a></dt>
<dd> </dd>
</dl>
<a name="I:B">
@@ -358,62 +358,62 @@
<dd>
<div class="block">Create new instance using existing Client instance, and a base URI and any parameters</div>
</dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/master/rest/TavernaServerInputREST.InputsDescriptor.html#baclava">baclava</a></span> - Variable in class org.taverna.server.master.rest.<a href="org/taverna/server/master/rest/TavernaServerInputREST.InputsDescriptor.html" title="class in org.taverna.server.master.rest">TavernaServerInputREST.InputsDescriptor</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/master/rest/TavernaServerInputREST.InputsDescriptor.html#baclava">baclava</a></span> - Variable in class org.apache.taverna.server.master.rest.<a href="org/apache/taverna/server/master/rest/TavernaServerInputREST.InputsDescriptor.html" title="class in org.apache.taverna.server.master.rest">TavernaServerInputREST.InputsDescriptor</a></dt>
<dd>
<div class="block">Where to find the overall Baclava document filename (if set).</div>
</dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/master/rest/TavernaServerInputREST.PathNames.html#BACLAVA">BACLAVA</a></span> - Static variable in interface org.taverna.server.master.rest.<a href="org/taverna/server/master/rest/TavernaServerInputREST.PathNames.html" title="interface in org.taverna.server.master.rest">TavernaServerInputREST.PathNames</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/master/rest/TavernaServerInputREST.PathNames.html#BACLAVA">BACLAVA</a></span> - Static variable in interface org.apache.taverna.server.master.rest.<a href="org/apache/taverna/server/master/rest/TavernaServerInputREST.PathNames.html" title="interface in org.apache.taverna.server.master.rest">TavernaServerInputREST.PathNames</a></dt>
<dd> </dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/master/api/ContentTypes.html#BACLAVA_MEDIA_TYPE">BACLAVA_MEDIA_TYPE</a></span> - Static variable in interface org.taverna.server.master.api.<a href="org/taverna/server/master/api/ContentTypes.html" title="interface in org.taverna.server.master.api">ContentTypes</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/master/api/ContentTypes.html#BACLAVA_MEDIA_TYPE">BACLAVA_MEDIA_TYPE</a></span> - Static variable in interface org.apache.taverna.server.master.api.<a href="org/apache/taverna/server/master/api/ContentTypes.html" title="interface in org.apache.taverna.server.master.api">ContentTypes</a></dt>
<dd>
<div class="block">"application/vnd.taverna.baclava+xml"</div>
</dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/master/common/InputDescription.html#baclavaFile">baclavaFile</a></span> - Variable in class org.taverna.server.master.common.<a href="org/taverna/server/master/common/InputDescription.html" title="class in org.taverna.server.master.common">InputDescription</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/master/common/InputDescription.html#baclavaFile">baclavaFile</a></span> - Variable in class org.apache.taverna.server.master.common.<a href="org/apache/taverna/server/master/common/InputDescription.html" title="class in org.apache.taverna.server.master.common">InputDescription</a></dt>
<dd>
<div class="block">The Baclava file handling the description of the elements.</div>
</dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/master/rest/TavernaServerInputREST.html#baclavaOptions--">baclavaOptions()</a></span> - Method in interface org.taverna.server.master.rest.<a href="org/taverna/server/master/rest/TavernaServerInputREST.html" title="interface in org.taverna.server.master.rest">TavernaServerInputREST</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/master/rest/TavernaServerInputREST.html#baclavaOptions--">baclavaOptions()</a></span> - Method in interface org.apache.taverna.server.master.rest.<a href="org/apache/taverna/server/master/rest/TavernaServerInputREST.html" title="interface in org.apache.taverna.server.master.rest">TavernaServerInputREST</a></dt>
<dd>
<div class="block">Get an outline of the operations supported.</div>
</dd>
-<dt><a href="org/taverna/server/master/exceptions/BadInputPortNameException.html" title="class in org.taverna.server.master.exceptions"><span class="typeNameLink">BadInputPortNameException</span></a> - Exception in <a href="org/taverna/server/master/exceptions/package-summary.html">org.taverna.server.master.exceptions</a></dt>
+<dt><a href="org/apache/taverna/server/master/exceptions/BadInputPortNameException.html" title="class in org.apache.taverna.server.master.exceptions"><span class="typeNameLink">BadInputPortNameException</span></a> - Exception in <a href="org/apache/taverna/server/master/exceptions/package-summary.html">org.apache.taverna.server.master.exceptions</a></dt>
<dd>
<div class="block">Indicates that the port name was not recognized.</div>
</dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/master/exceptions/BadInputPortNameException.html#BadInputPortNameException-java.lang.String-">BadInputPortNameException(String)</a></span> - Constructor for exception org.taverna.server.master.exceptions.<a href="org/taverna/server/master/exceptions/BadInputPortNameException.html" title="class in org.taverna.server.master.exceptions">BadInputPortNameException</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/master/exceptions/BadInputPortNameException.html#BadInputPortNameException-java.lang.String-">BadInputPortNameException(String)</a></span> - Constructor for exception org.apache.taverna.server.master.exceptions.<a href="org/apache/taverna/server/master/exceptions/BadInputPortNameException.html" title="class in org.apache.taverna.server.master.exceptions">BadInputPortNameException</a></dt>
<dd> </dd>
-<dt><a href="org/taverna/server/master/rest/handler/BadInputPortNameHandler.html" title="class in org.taverna.server.master.rest.handler"><span class="typeNameLink">BadInputPortNameHandler</span></a> - Class in <a href="org/taverna/server/master/rest/handler/package-summary.html">org.taverna.server.master.rest.handler</a></dt>
+<dt><a href="org/apache/taverna/server/master/rest/handler/BadInputPortNameHandler.html" title="class in org.apache.taverna.server.master.rest.handler"><span class="typeNameLink">BadInputPortNameHandler</span></a> - Class in <a href="org/apache/taverna/server/master/rest/handler/package-summary.html">org.apache.taverna.server.master.rest.handler</a></dt>
<dd> </dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/master/rest/handler/BadInputPortNameHandler.html#BadInputPortNameHandler--">BadInputPortNameHandler()</a></span> - Constructor for class org.taverna.server.master.rest.handler.<a href="org/taverna/server/master/rest/handler/BadInputPortNameHandler.html" title="class in org.taverna.server.master.rest.handler">BadInputPortNameHandler</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/master/rest/handler/BadInputPortNameHandler.html#BadInputPortNameHandler--">BadInputPortNameHandler()</a></span> - Constructor for class org.apache.taverna.server.master.rest.handler.<a href="org/apache/taverna/server/master/rest/handler/BadInputPortNameHandler.html" title="class in org.apache.taverna.server.master.rest.handler">BadInputPortNameHandler</a></dt>
<dd> </dd>
-<dt><a href="org/taverna/server/master/exceptions/BadPropertyValueException.html" title="class in org.taverna.server.master.exceptions"><span class="typeNameLink">BadPropertyValueException</span></a> - Exception in <a href="org/taverna/server/master/exceptions/package-summary.html">org.taverna.server.master.exceptions</a></dt>
+<dt><a href="org/apache/taverna/server/master/exceptions/BadPropertyValueException.html" title="class in org.apache.taverna.server.master.exceptions"><span class="typeNameLink">BadPropertyValueException</span></a> - Exception in <a href="org/apache/taverna/server/master/exceptions/package-summary.html">org.apache.taverna.server.master.exceptions</a></dt>
<dd>
<div class="block">Indicates a bad property value.</div>
</dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/master/exceptions/BadPropertyValueException.html#BadPropertyValueException-java.lang.String-">BadPropertyValueException(String)</a></span> - Constructor for exception org.taverna.server.master.exceptions.<a href="org/taverna/server/master/exceptions/BadPropertyValueException.html" title="class in org.taverna.server.master.exceptions">BadPropertyValueException</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/master/exceptions/BadPropertyValueException.html#BadPropertyValueException-java.lang.String-">BadPropertyValueException(String)</a></span> - Constructor for exception org.apache.taverna.server.master.exceptions.<a href="org/apache/taverna/server/master/exceptions/BadPropertyValueException.html" title="class in org.apache.taverna.server.master.exceptions">BadPropertyValueException</a></dt>
<dd> </dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/master/exceptions/BadPropertyValueException.html#BadPropertyValueException-java.lang.String-java.lang.Throwable-">BadPropertyValueException(String, Throwable)</a></span> - Constructor for exception org.taverna.server.master.exceptions.<a href="org/taverna/server/master/exceptions/BadPropertyValueException.html" title="class in org.taverna.server.master.exceptions">BadPropertyValueException</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/master/exceptions/BadPropertyValueException.html#BadPropertyValueException-java.lang.String-java.lang.Throwable-">BadPropertyValueException(String, Throwable)</a></span> - Constructor for exception org.apache.taverna.server.master.exceptions.<a href="org/apache/taverna/server/master/exceptions/BadPropertyValueException.html" title="class in org.apache.taverna.server.master.exceptions">BadPropertyValueException</a></dt>
<dd> </dd>
-<dt><a href="org/taverna/server/master/rest/handler/BadPropertyValueHandler.html" title="class in org.taverna.server.master.rest.handler"><span class="typeNameLink">BadPropertyValueHandler</span></a> - Class in <a href="org/taverna/server/master/rest/handler/package-summary.html">org.taverna.server.master.rest.handler</a></dt>
+<dt><a href="org/apache/taverna/server/master/rest/handler/BadPropertyValueHandler.html" title="class in org.apache.taverna.server.master.rest.handler"><span class="typeNameLink">BadPropertyValueHandler</span></a> - Class in <a href="org/apache/taverna/server/master/rest/handler/package-summary.html">org.apache.taverna.server.master.rest.handler</a></dt>
<dd> </dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/master/rest/handler/BadPropertyValueHandler.html#BadPropertyValueHandler--">BadPropertyValueHandler()</a></span> - Constructor for class org.taverna.server.master.rest.handler.<a href="org/taverna/server/master/rest/handler/BadPropertyValueHandler.html" title="class in org.taverna.server.master.rest.handler">BadPropertyValueHandler</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/master/rest/handler/BadPropertyValueHandler.html#BadPropertyValueHandler--">BadPropertyValueHandler()</a></span> - Constructor for class org.apache.taverna.server.master.rest.handler.<a href="org/apache/taverna/server/master/rest/handler/BadPropertyValueHandler.html" title="class in org.apache.taverna.server.master.rest.handler">BadPropertyValueHandler</a></dt>
<dd> </dd>
-<dt><a href="org/taverna/server/master/exceptions/BadStateChangeException.html" title="class in org.taverna.server.master.exceptions"><span class="typeNameLink">BadStateChangeException</span></a> - Exception in <a href="org/taverna/server/master/exceptions/package-summary.html">org.taverna.server.master.exceptions</a></dt>
+<dt><a href="org/apache/taverna/server/master/exceptions/BadStateChangeException.html" title="class in org.apache.taverna.server.master.exceptions"><span class="typeNameLink">BadStateChangeException</span></a> - Exception in <a href="org/apache/taverna/server/master/exceptions/package-summary.html">org.apache.taverna.server.master.exceptions</a></dt>
<dd>
<div class="block">Exception that is thrown to indicate that the state change requested for a
run is impossible.</div>
</dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/master/exceptions/BadStateChangeException.html#BadStateChangeException--">BadStateChangeException()</a></span> - Constructor for exception org.taverna.server.master.exceptions.<a href="org/taverna/server/master/exceptions/BadStateChangeException.html" title="class in org.taverna.server.master.exceptions">BadStateChangeException</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/master/exceptions/BadStateChangeException.html#BadStateChangeException--">BadStateChangeException()</a></span> - Constructor for exception org.apache.taverna.server.master.exceptions.<a href="org/apache/taverna/server/master/exceptions/BadStateChangeException.html" title="class in org.apache.taverna.server.master.exceptions">BadStateChangeException</a></dt>
<dd> </dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/master/exceptions/BadStateChangeException.html#BadStateChangeException-java.lang.Throwable-">BadStateChangeException(Throwable)</a></span> - Constructor for exception org.taverna.server.master.exceptions.<a href="org/taverna/server/master/exceptions/BadStateChangeException.html" title="class in org.taverna.server.master.exceptions">BadStateChangeException</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/master/exceptions/BadStateChangeException.html#BadStateChangeException-java.lang.Throwable-">BadStateChangeException(Throwable)</a></span> - Constructor for exception org.apache.taverna.server.master.exceptions.<a href="org/apache/taverna/server/master/exceptions/BadStateChangeException.html" title="class in org.apache.taverna.server.master.exceptions">BadStateChangeException</a></dt>
<dd> </dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/master/exceptions/BadStateChangeException.html#BadStateChangeException-java.lang.String-java.lang.Throwable-">BadStateChangeException(String, Throwable)</a></span> - Constructor for exception org.taverna.server.master.exceptions.<a href="org/taverna/server/master/exceptions/BadStateChangeException.html" title="class in org.taverna.server.master.exceptions">BadStateChangeException</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/master/exceptions/BadStateChangeException.html#BadStateChangeException-java.lang.String-java.lang.Throwable-">BadStateChangeException(String, Throwable)</a></span> - Constructor for exception org.apache.taverna.server.master.exceptions.<a href="org/apache/taverna/server/master/exceptions/BadStateChangeException.html" title="class in org.apache.taverna.server.master.exceptions">BadStateChangeException</a></dt>
<dd> </dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/master/exceptions/BadStateChangeException.html#BadStateChangeException-java.lang.String-">BadStateChangeException(String)</a></span> - Constructor for exception org.taverna.server.master.exceptions.<a href="org/taverna/server/master/exceptions/BadStateChangeException.html" title="class in org.taverna.server.master.exceptions">BadStateChangeException</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/master/exceptions/BadStateChangeException.html#BadStateChangeException-java.lang.String-">BadStateChangeException(String)</a></span> - Constructor for exception org.apache.taverna.server.master.exceptions.<a href="org/apache/taverna/server/master/exceptions/BadStateChangeException.html" title="class in org.apache.taverna.server.master.exceptions">BadStateChangeException</a></dt>
<dd> </dd>
-<dt><a href="org/taverna/server/master/rest/handler/BadStateChangeHandler.html" title="class in org.taverna.server.master.rest.handler"><span class="typeNameLink">BadStateChangeHandler</span></a> - Class in <a href="org/taverna/server/master/rest/handler/package-summary.html">org.taverna.server.master.rest.handler</a></dt>
+<dt><a href="org/apache/taverna/server/master/rest/handler/BadStateChangeHandler.html" title="class in org.apache.taverna.server.master.rest.handler"><span class="typeNameLink">BadStateChangeHandler</span></a> - Class in <a href="org/apache/taverna/server/master/rest/handler/package-summary.html">org.apache.taverna.server.master.rest.handler</a></dt>
<dd> </dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/master/rest/handler/BadStateChangeHandler.html#BadStateChangeHandler--">BadStateChangeHandler()</a></span> - Constructor for class org.taverna.server.master.rest.handler.<a href="org/taverna/server/master/rest/handler/BadStateChangeHandler.html" title="class in org.taverna.server.master.rest.handler">BadStateChangeHandler</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/master/rest/handler/BadStateChangeHandler.html#BadStateChangeHandler--">BadStateChangeHandler()</a></span> - Constructor for class org.apache.taverna.server.master.rest.handler.<a href="org/apache/taverna/server/master/rest/handler/BadStateChangeHandler.html" title="class in org.apache.taverna.server.master.rest.handler">BadStateChangeHandler</a></dt>
<dd> </dd>
<dt><span class="memberNameLink"><a href="org/apache/taverna/server/client/wadl/TavernaServer.html#BASE_URI">BASE_URI</a></span> - Static variable in class org.apache.taverna.server.client.wadl.<a href="org/apache/taverna/server/client/wadl/TavernaServer.html" title="class in org.apache.taverna.server.client.wadl">TavernaServer</a></dt>
<dd>
@@ -427,13 +427,13 @@
</dd>
<dt><span class="memberNameLink"><a href="org/apache/taverna/server/usagerecord/xml/urf2/BenchmarkType.html#BenchmarkType--">BenchmarkType()</a></span> - Constructor for class org.apache.taverna.server.usagerecord.xml.urf2.<a href="org/apache/taverna/server/usagerecord/xml/urf2/BenchmarkType.html" title="class in org.apache.taverna.server.usagerecord.xml.urf2">BenchmarkType</a></dt>
<dd> </dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/master/TavernaServerSupport.html#buildWorkflow-org.taverna.server.master.common.Workflow-">buildWorkflow(Workflow)</a></span> - Method in class org.taverna.server.master.<a href="org/taverna/server/master/TavernaServerSupport.html" title="class in org.taverna.server.master">TavernaServerSupport</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/master/TavernaServerSupport.html#buildWorkflow-org.apache.taverna.server.master.common.Workflow-">buildWorkflow(Workflow)</a></span> - Method in class org.apache.taverna.server.master.<a href="org/apache/taverna/server/master/TavernaServerSupport.html" title="class in org.apache.taverna.server.master">TavernaServerSupport</a></dt>
<dd>
<div class="block">Manufacture a workflow run instance.</div>
</dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/port_description/ErrorValue.html#byteLength">byteLength</a></span> - Variable in class org.taverna.server.port_description.<a href="org/taverna/server/port_description/ErrorValue.html" title="class in org.taverna.server.port_description">ErrorValue</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/port_description/ErrorValue.html#byteLength">byteLength</a></span> - Variable in class org.apache.taverna.server.port_description.<a href="org/apache/taverna/server/port_description/ErrorValue.html" title="class in org.apache.taverna.server.port_description">ErrorValue</a></dt>
<dd> </dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/port_description/LeafValue.html#byteLength">byteLength</a></span> - Variable in class org.taverna.server.port_description.<a href="org/taverna/server/port_description/LeafValue.html" title="class in org.taverna.server.port_description">LeafValue</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/port_description/LeafValue.html#byteLength">byteLength</a></span> - Variable in class org.apache.taverna.server.port_description.<a href="org/apache/taverna/server/port_description/LeafValue.html" title="class in org.apache.taverna.server.port_description">LeafValue</a></dt>
<dd> </dd>
</dl>
<a name="I:C">
@@ -441,24 +441,24 @@
</a>
<h2 class="title">C</h2>
<dl>
-<dt><span class="memberNameLink"><a href="org/taverna/server/master/identity/UserStore.CachedUserStore.html#CachedUserStore--">CachedUserStore()</a></span> - Constructor for class org.taverna.server.master.identity.<a href="org/taverna/server/master/identity/UserStore.CachedUserStore.html" title="class in org.taverna.server.master.identity">UserStore.CachedUserStore</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/master/identity/UserStore.CachedUserStore.html#CachedUserStore--">CachedUserStore()</a></span> - Constructor for class org.apache.taverna.server.master.identity.<a href="org/apache/taverna/server/master/identity/UserStore.CachedUserStore.html" title="class in org.apache.taverna.server.master.identity">UserStore.CachedUserStore</a></dt>
<dd> </dd>
-<dt><a href="org/taverna/server/master/utils/CallTimeLogger.html" title="class in org.taverna.server.master.utils"><span class="typeNameLink">CallTimeLogger</span></a> - Class in <a href="org/taverna/server/master/utils/package-summary.html">org.taverna.server.master.utils</a></dt>
+<dt><a href="org/apache/taverna/server/master/utils/CallTimeLogger.html" title="class in org.apache.taverna.server.master.utils"><span class="typeNameLink">CallTimeLogger</span></a> - Class in <a href="org/apache/taverna/server/master/utils/package-summary.html">org.apache.taverna.server.master.utils</a></dt>
<dd>
<div class="block">This class is responsible for timing all invocations of publicly-exposed
methods of the webapp.</div>
</dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/master/utils/CallTimeLogger.html#CallTimeLogger--">CallTimeLogger()</a></span> - Constructor for class org.taverna.server.master.utils.<a href="org/taverna/server/master/utils/CallTimeLogger.html" title="class in org.taverna.server.master.utils">CallTimeLogger</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/master/utils/CallTimeLogger.html#CallTimeLogger--">CallTimeLogger()</a></span> - Constructor for class org.apache.taverna.server.master.utils.<a href="org/apache/taverna/server/master/utils/CallTimeLogger.html" title="class in org.apache.taverna.server.master.utils">CallTimeLogger</a></dt>
<dd> </dd>
-<dt><a href="org/taverna/server/master/utils/CallTimeLogger.PerfLogged.html" title="annotation in org.taverna.server.master.utils"><span class="typeNameLink">CallTimeLogger.PerfLogged</span></a> - Annotation Type in <a href="org/taverna/server/master/utils/package-summary.html">org.taverna.server.master.utils</a></dt>
+<dt><a href="org/apache/taverna/server/master/utils/CallTimeLogger.PerfLogged.html" title="annotation in org.apache.taverna.server.master.utils"><span class="typeNameLink">CallTimeLogger.PerfLogged</span></a> - Annotation Type in <a href="org/apache/taverna/server/master/utils/package-summary.html">org.apache.taverna.server.master.utils</a></dt>
<dd>
<div class="block">Mark methods that should be counted by the invocation counter.</div>
</dd>
-<dt><a href="org/taverna/server/master/utils/CallTimingFilter.html" title="class in org.taverna.server.master.utils"><span class="typeNameLink">CallTimingFilter</span></a> - Class in <a href="org/taverna/server/master/utils/package-summary.html">org.taverna.server.master.utils</a></dt>
+<dt><a href="org/apache/taverna/server/master/utils/CallTimingFilter.html" title="class in org.apache.taverna.server.master.utils"><span class="typeNameLink">CallTimingFilter</span></a> - Class in <a href="org/apache/taverna/server/master/utils/package-summary.html">org.apache.taverna.server.master.utils</a></dt>
<dd>
<div class="block">Logs the time it takes to service HTTP calls into Taverna Server.</div>
</dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/master/utils/CallTimingFilter.html#CallTimingFilter--">CallTimingFilter()</a></span> - Constructor for class org.taverna.server.master.utils.<a href="org/taverna/server/master/utils/CallTimingFilter.html" title="class in org.taverna.server.master.utils">CallTimingFilter</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/master/utils/CallTimingFilter.html#CallTimingFilter--">CallTimingFilter()</a></span> - Constructor for class org.apache.taverna.server.master.utils.<a href="org/apache/taverna/server/master/utils/CallTimingFilter.html" title="class in org.apache.taverna.server.master.utils">CallTimingFilter</a></dt>
<dd> </dd>
<dt><span class="memberNameLink"><a href="org/apache/taverna/server/usagerecord/xml/dsig/SignedInfoType.html#canonicalizationMethod">canonicalizationMethod</a></span> - Variable in class org.apache.taverna.server.usagerecord.xml.dsig.<a href="org/apache/taverna/server/usagerecord/xml/dsig/SignedInfoType.html" title="class in org.apache.taverna.server.usagerecord.xml.dsig">SignedInfoType</a></dt>
<dd> </dd>
@@ -482,7 +482,7 @@
<dd>
<div class="block">Create new instance using existing Client instance, and a base URI and any parameters</div>
</dd>
-<dt><span class="memberNameLink"><a href="org/taverna/server/master/rest/TavernaServerREST.PolicyView.PolicyDescription.html#capabilities">capabilities</a></span> - Variable in class org.taverna.server.master.rest.<a href="org/taverna/server/master/rest/TavernaServerREST.PolicyView.PolicyDescription.html" title="class in org.taverna.server.master.rest">TavernaServerREST.PolicyView.PolicyDescription</a></dt>
+<dt><span class="memberNameLink"><a href="org/apache/taverna/server/master/rest/TavernaServerREST.PolicyView.PolicyDescription.html#capabilities">capabilities</a></span> - Variable in class org.apache.taverna.server.master.rest.<a href="org/apache/taverna/server/master/rest/TavernaServerREST.PolicyView.PolicyDescription.html" title="class in org.apache.taverna.server.master.rest">TavernaServerREST.PolicyView.PolicyDescription</a></dt>
<dd> </dd>
<dt><a href="org/apache/taverna/server/client/generic/Capability.html" title="class in org.apache.taverna.server.client.generic"><span class="typeNameLink">Capability</span></a> - Class in <a href="org/apache/taverna/server/client/generic/package-summary.html">org.apache.taverna.server.client.generic</a></dt>
<dd>
@@ -494,52 +494,52 @@
<dd> </dd>
<dt><span class="memberNameLink"><a href="org/apache/taverna/server/client/rest/Capabilities.html#capability">capability</a></span> - Variable in class org.apache.taverna.server.client.rest.<a href="org/apache/taverna/server/client/rest/Capabilities.html" title="class in org.apache.taverna.server.client.rest">Capabilities</a></dt>
<dd> </dd>
[... 11203 lines stripped ...]