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Posted to dev@ctakes.apache.org by "Finan, Sean" <Se...@childrens.harvard.edu> on 2017/06/30 18:35:51 UTC

RE: Inquiry about using cTakes with sql [EXTERNAL]

Hi Raga,

The topic of grabbing data from a db has come up several times within the last six months or so.  There are some classes in ctakes-core cr/ that deal with databases, but they are not documented and do require configuration for site-specific schema.

Is anybody out there familiar with them enough to write up a wiki page?

Thanks,
Sean

From: Bjarnadottir,Ragnhildur I [mailto:rib@ufl.edu]
Sent: Friday, June 30, 2017 11:11 AM
To: dev@ctakes.apache.org
Subject: Inquiry about using cTakes with sql [EXTERNAL]

Good morning,

I am attempting to use cTakes for some NLP analysis on a corpus of clinical nursing progress notes. Currently I am only looking to use the core NLP pipeline. My data is in a MySQL database, do you have any documentation on using cTakes with MySQL or similar databases?

Thank you
Best,
Raga


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RE: Inquiry about using cTakes with sql [EXTERNAL]

Posted by "Mullane, Sean *HS" <SP...@hscmail.mcc.virginia.edu>.
I don't know about using only ctakes-core, but FWIW I have had success with using the YTEX classes to read from and write to a database. We are using MSSQL but from what I have seen I expect MySQL to work as well.

Sean

From: Finan, Sean [mailto:Sean.Finan@childrens.harvard.edu]
Sent: Friday, June 30, 2017 2:36 PM
To: dev@ctakes.apache.org
Subject: RE: Inquiry about using cTakes with sql [EXTERNAL]

Hi Raga,

The topic of grabbing data from a db has come up several times within the last six months or so.  There are some classes in ctakes-core cr/ that deal with databases, but they are not documented and do require configuration for site-specific schema.

Is anybody out there familiar with them enough to write up a wiki page?

Thanks,
Sean

From: Bjarnadottir,Ragnhildur I [mailto:rib@ufl.edu]
Sent: Friday, June 30, 2017 11:11 AM
To: dev@ctakes.apache.org<ma...@ctakes.apache.org>
Subject: Inquiry about using cTakes with sql [EXTERNAL]

Good morning,

I am attempting to use cTakes for some NLP analysis on a corpus of clinical nursing progress notes. Currently I am only looking to use the core NLP pipeline. My data is in a MySQL database, do you have any documentation on using cTakes with MySQL or similar databases?

Thank you
Best,
Raga


[cid:image002.jpg@01D2F1AE.27609410]