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Posted to commits@uima.apache.org by sc...@apache.org on 2007/07/27 17:59:03 UTC

svn commit: r560293 [1/4] - in /incubator/uima/uimaj/trunk/uima-docbooks/src: docbook/overview_and_setup/ docbook/overview_and_setup/images/eclipse_setup_files/ docbook/references/ docbook/tools/ docbook/tutorials_and_users_guides/ olink/overview_and_s...

Author: schor
Date: Fri Jul 27 08:59:02 2007
New Revision: 560293

URL: http://svn.apache.org/viewvc?view=rev&rev=560293
Log:
[UIMA-516] add info on attaching UIMA Javadocs in places where
info on attaching Sources was removed.  Keep a ref to how to
attach sources, if the sources are downloaded. Put back one
image of what the hovered Javadoc info looks like.  

Also fixed spelling of JavaDoc -> Javadoc to be consistent
with usage in Eclipse.

Added:
    incubator/uima/uimaj/trunk/uima-docbooks/src/docbook/overview_and_setup/images/eclipse_setup_files/image004.jpg   (with props)
Modified:
    incubator/uima/uimaj/trunk/uima-docbooks/src/docbook/overview_and_setup/eclipse_setup.xml
    incubator/uima/uimaj/trunk/uima-docbooks/src/docbook/overview_and_setup/project_overview.xml
    incubator/uima/uimaj/trunk/uima-docbooks/src/docbook/references/ref.cas.xml
    incubator/uima/uimaj/trunk/uima-docbooks/src/docbook/references/ref.javadocs.xml
    incubator/uima/uimaj/trunk/uima-docbooks/src/docbook/references/ref.jcas.xml
    incubator/uima/uimaj/trunk/uima-docbooks/src/docbook/references/ref.pear.xml
    incubator/uima/uimaj/trunk/uima-docbooks/src/docbook/tools/tools.doc_analyzer.xml
    incubator/uima/uimaj/trunk/uima-docbooks/src/docbook/tutorials_and_users_guides/annotator_analysis_engine_guide.xml
    incubator/uima/uimaj/trunk/uima-docbooks/src/docbook/tutorials_and_users_guides/tug.application.xml
    incubator/uima/uimaj/trunk/uima-docbooks/src/docbook/tutorials_and_users_guides/tug.cpe.xml
    incubator/uima/uimaj/trunk/uima-docbooks/src/olink/overview_and_setup/htmlsingle-target.db
    incubator/uima/uimaj/trunk/uima-docbooks/src/olink/overview_and_setup/pdf-target.db
    incubator/uima/uimaj/trunk/uima-docbooks/src/olink/references/htmlsingle-target.db
    incubator/uima/uimaj/trunk/uima-docbooks/src/olink/references/pdf-target.db

Modified: incubator/uima/uimaj/trunk/uima-docbooks/src/docbook/overview_and_setup/eclipse_setup.xml
URL: http://svn.apache.org/viewvc/incubator/uima/uimaj/trunk/uima-docbooks/src/docbook/overview_and_setup/eclipse_setup.xml?view=diff&rev=560293&r1=560292&r2=560293
==============================================================================
--- incubator/uima/uimaj/trunk/uima-docbooks/src/docbook/overview_and_setup/eclipse_setup.xml (original)
+++ incubator/uima/uimaj/trunk/uima-docbooks/src/docbook/overview_and_setup/eclipse_setup.xml Fri Jul 27 08:59:02 2007
@@ -257,6 +257,56 @@
     
   </section>
    
+  <section id="ugr.ovv.eclipse_setup.linking_uima_javadocs">
+     <title>Attaching UIMA Javadocs</title>
+     
+     <para>The binary distribution also includes the UIMA Javadocs.  They are
+       attached to the UIMA library Jar files in the uima-examples project described
+       above.  You can attach the Javadocs to your own project as well.  
+     </para>
+     
+     <para>Attaching the Javadocs enables javadoc help for UIMA APIs.  After they are 
+       attached, if you hover your mouse
+     over a certain UIMA api element, the corresponding javadoc will appear.  
+       You can then press <quote>F2</quote> to make the hover "stick", or 
+       <quote>Shift-F2</quote> to open the default 
+       web-browser on your system to let you browse the entire Javadoc information 
+       for that element.
+     </para>
+     <para>If this pop-up behavior is something you don't want, you can turn it off
+     in the Eclipse preferences, in the menu Window &rarr; Preferences &rarr;
+       Java &rarr; Editors &rarr; hovers.
+     </para>
+    
+     <para>Eclipse also has a Javadoc "view" which you can show, using the Window &rarr;
+     Show View &rarr; Javadoc.</para>
+   
+     <para>See <olink targetdoc="&uima_docs_ref;" targetptr="ugr.ref.javadocs.libraries"/>
+     for information on how to set up a UIMA "library" with the Javadocs attached, which
+     can be reused for other projects in your Eclipse workspace.</para>
+                
+     <para>You can attach the Javadocs to each UIMA library jar you think you might be 
+       interested in.  It makes most sense
+       for the uima-core.jar, you'll probably use the core APIs most of all.
+     </para>
+     
+     <para>Here's a screenshot of what you should see when you hover your mouse pointer over the
+     class name <quote>CAS</quote> in the source code.
+     </para>
+
+       <informalfigure>
+         <mediaobject>
+           <imageobject>
+             <imagedata scale="100" format="JPG" fileref="&imgroot;image004.jpg"/>
+           </imageobject>
+           <textobject><phrase>Screenshot of mouse-over for UIMA APIs</phrase>
+           </textobject>
+         </mediaobject>
+       </informalfigure>
+       
+   </section>
+  
+  
   <section id="ugr.ovv.eclipse_setup.running_external_tools_from_eclipse">
     <title>Running external tools from Eclipse</title>
     

Added: incubator/uima/uimaj/trunk/uima-docbooks/src/docbook/overview_and_setup/images/eclipse_setup_files/image004.jpg
URL: http://svn.apache.org/viewvc/incubator/uima/uimaj/trunk/uima-docbooks/src/docbook/overview_and_setup/images/eclipse_setup_files/image004.jpg?view=auto&rev=560293
==============================================================================
Binary file - no diff available.

Propchange: incubator/uima/uimaj/trunk/uima-docbooks/src/docbook/overview_and_setup/images/eclipse_setup_files/image004.jpg
------------------------------------------------------------------------------
    svn:mime-type = application/octet-stream

Modified: incubator/uima/uimaj/trunk/uima-docbooks/src/docbook/overview_and_setup/project_overview.xml
URL: http://svn.apache.org/viewvc/incubator/uima/uimaj/trunk/uima-docbooks/src/docbook/overview_and_setup/project_overview.xml?view=diff&rev=560293&r1=560292&r2=560293
==============================================================================
--- incubator/uima/uimaj/trunk/uima-docbooks/src/docbook/overview_and_setup/project_overview.xml (original)
+++ incubator/uima/uimaj/trunk/uima-docbooks/src/docbook/overview_and_setup/project_overview.xml Fri Jul 27 08:59:02 2007
@@ -334,9 +334,9 @@
           <colspec colnum="2" colname="col2" colwidth="2.5*"/>
           <tbody>
             <row id="ugr.project_overview_javadocs">
-              <entry><emphasis>Introduction to the UIMA API JavaDocs</emphasis>
+              <entry><emphasis>Introduction to the UIMA API Javadocs</emphasis>
               </entry>
-              <entry>JavaDocs detailing the UIMA programming interfaces  See 
+              <entry>Javadocs detailing the UIMA programming interfaces  See 
                 <olink targetdoc="&uima_docs_ref;" targetptr="ugr.ref.javadocs"/></entry>
             </row>
             <row id="ugr.project_overview_xml_ref_component_descriptor">
@@ -829,7 +829,7 @@
         <title>Use of Undocumented Methods from the com.ibm.uima.util package</title>
         <titleabbrev>Undocumented Methods</titleabbrev>
         <para>Previous UIMA versions has some methods in the <literal>com.ibm.uima.util</literal> package that
-          were for internal use and were not documented in the JavaDoc. (There are also many methods in that package
+          were for internal use and were not documented in the Javadoc. (There are also many methods in that package
           which are documented, and there is no issue with using these.) It is not recommended that you use any of the
           undocumented methods. If you do, the migration script will not handle them correctly. These have now been
           moved to <literal>org.apache.uima.internal.util</literal>, and you will have to manually update your

Modified: incubator/uima/uimaj/trunk/uima-docbooks/src/docbook/references/ref.cas.xml
URL: http://svn.apache.org/viewvc/incubator/uima/uimaj/trunk/uima-docbooks/src/docbook/references/ref.cas.xml?view=diff&rev=560293&r1=560292&r2=560293
==============================================================================
--- incubator/uima/uimaj/trunk/uima-docbooks/src/docbook/references/ref.cas.xml (original)
+++ incubator/uima/uimaj/trunk/uima-docbooks/src/docbook/references/ref.cas.xml Fri Jul 27 08:59:02 2007
@@ -54,7 +54,7 @@
     views, which are regular CASes.</para>
   
   <section id="ugr.ref.cas.javadocs">
-    <title>JavaDocs</title>
+    <title>Javadocs</title>
     
     <para>The subdirectory <literal>docs/api</literal> contains the documentation
       details of all the classes, methods, and constants for the APIs discussed here. Please
@@ -481,7 +481,7 @@
         with TypeSystem.getTopType and by retrieving subtypes with
         <literal>TypeSystem.getDirectlySubsumedTypes()</literal>.</para>
       
-      <para>The JavaDocs also have APIs that allow you to access the features, as well as what
+      <para>The Javadocs also have APIs that allow you to access the features, as well as what
         the allowed value type is for that feature. Here is sample code which prints out all the
         features of all the types, together with the allowed value types (the feature
         <quote>range</quote>). Each feature has a <quote>domain</quote> which is the type
@@ -698,7 +698,7 @@
 // set the lastNameFeature value
 aPerson.setStringValue(lastNameFeature, newStringValueForLastName);</programlisting>
     
-    <para>The getters and setters for each of the primitive types are defined in the JavaDocs
+    <para>The getters and setters for each of the primitive types are defined in the Javadocs
       as methods of the FeatureStructure interface.</para>
     
   </section>
@@ -801,7 +801,7 @@
       <para>There is also a method which produces an <literal>AnnotationTree</literal>
         object, which contains nodes representing the results of doing a strict,
         unambiguous subiterator over the span of some controlling annotation. For more
-        details, please refer to the JavaDocs for the
+        details, please refer to the Javadocs for the
         <literal>org.apache.uima.cas.text</literal> package.</para>
       
     </section>
@@ -846,7 +846,7 @@
       
       <para>Each test may be combined with a path &ndash; to get to the value to test. Tests that
         start from a feature structure instance can be combined with and and or connectors.
-        The JavaDocs for these are in the package org.apache.uima.cas in the classes that end
+        The Javadocs for these are in the package org.apache.uima.cas in the classes that end
         in Constraint, plus the classes ConstraintFactory, FeaturePath and CAS.
         Here&apos;s an example; assume the variable cas holds a reference to a CAS instance.
         
@@ -900,8 +900,8 @@
         </para></section></section>
   
   <section id="ugr.ref.cas.guide_to_javadocs">
-    <title>The CAS API&apos;s &ndash; a guide to the JavaDocs</title>
-    <titleabbrev>CAS API&apos;s JavaDocs</titleabbrev>
+    <title>The CAS API&apos;s &ndash; a guide to the Javadocs</title>
+    <titleabbrev>CAS API&apos;s Javadocs</titleabbrev>
     
     <para>The CAS APIs are organized into 3 Java packages: cas, cas.impl, and cas.text. Most
       of the APIs described here are in the cas package. The cas.impl package contains classes

Modified: incubator/uima/uimaj/trunk/uima-docbooks/src/docbook/references/ref.javadocs.xml
URL: http://svn.apache.org/viewvc/incubator/uima/uimaj/trunk/uima-docbooks/src/docbook/references/ref.javadocs.xml?view=diff&rev=560293&r1=560292&r2=560293
==============================================================================
--- incubator/uima/uimaj/trunk/uima-docbooks/src/docbook/references/ref.javadocs.xml (original)
+++ incubator/uima/uimaj/trunk/uima-docbooks/src/docbook/references/ref.javadocs.xml Fri Jul 27 08:59:02 2007
@@ -27,10 +27,10 @@
 <chapter id="ugr.ref.javadocs">
   <title>Javadocs</title>
   
-  <para>The details of all the public APIs for UIMA are contained in the API JavaDocs. These are located in the docs/api
+  <para>The details of all the public APIs for UIMA are contained in the API Javadocs. These are located in the docs/api
     directory; the top level to open in your browser is called <ulink url="api/index.html"/>.</para>
   
-  <para>Eclipse supports the ability to attach the JavaDocs to your project. The Javadoc should already be attached
+  <para>Eclipse supports the ability to attach the Javadocs to your project. The Javadoc should already be attached
     to the <literal>uimaj-examples</literal> project, if you followed the setup instructions in <olink
       targetdoc="&uima_docs_overview;" targetptr="ugr.ovv.eclipse_setup.example_code"/>. To attach
     Javadocs to your own Eclipse project, use the following instructions.</para>
@@ -51,9 +51,9 @@
     </mediaobject>
   </screenshot></para>
   
-  <para>Once you do this, Eclipse can show you JavaDocs for UIMA APIs as you work. To see the JavaDoc for a UIMA API, you
+  <para>Once you do this, Eclipse can show you Javadocs for UIMA APIs as you work. To see the Javadoc for a UIMA API, you
     can hover over the API class or method, or select it and press shift-F2, or use the menu Navigate &rarr;
-    OpenExternalJavaDoc, or open the Javadoc view (Window &rarr; Show View &rarr; Other
+    Open External Javadoc, or open the Javadoc view (Window &rarr; Show View &rarr; Other
     &rarr; Java &rarr; Javadoc).</para>
   
   <para>In a similar manner, you can attach the source for the UIMA framework, if you download the source
@@ -63,7 +63,7 @@
   
   <section id="ugr.ref.javadocs.libraries">
     <title>Using named Eclipse User Libraries</title>
-  <para>You can also create a named "user library" in Eclipse containing the UIMA Jars, and attach the JavaDocs (or
+  <para>You can also create a named "user library" in Eclipse containing the UIMA Jars, and attach the Javadocs (or
   optionally, the sources); this named library is saved in the Eclipse workspace.  Once created, it can be
   added to the classpath of newly created Eclipse projects.</para> 
   
@@ -74,7 +74,7 @@
   <para>To create this library in the workspace,
     use the same menu picks as above, but after you select the User Libraries and click "Next", you can click the "New Library..."
     button to define your new library.  You use the "Add Jars" button and multi-select all the Jars in the lib directory
-    of the UIMA binary distribution.  Then you add the JavaDoc attachment for each Jar.  The path to use is
+    of the UIMA binary distribution.  Then you add the Javadoc attachment for each Jar.  The path to use is
     file:/ -- insert the path to your install of UIMA -- /docs/api.  After you do this for the first Jar, you can
     copy this string to the clipboard and paste it into the rest of the Jars.</para>
     </section>

Modified: incubator/uima/uimaj/trunk/uima-docbooks/src/docbook/references/ref.jcas.xml
URL: http://svn.apache.org/viewvc/incubator/uima/uimaj/trunk/uima-docbooks/src/docbook/references/ref.jcas.xml?view=diff&rev=560293&r1=560292&r2=560293
==============================================================================
--- incubator/uima/uimaj/trunk/uima-docbooks/src/docbook/references/ref.jcas.xml (original)
+++ incubator/uima/uimaj/trunk/uima-docbooks/src/docbook/references/ref.jcas.xml Fri Jul 27 08:59:02 2007
@@ -114,15 +114,15 @@
     
     <para>Each XML type specification can have &lt;description ...
       &gt; tags. The description for a type will be copied into the generated Java code, as a
-      JavaDoc style comment for the class. When writing these descriptions in the XML type
-      specification file, you might want to use html tags, as allowed in JavaDocs.</para>
+      Javadoc style comment for the class. When writing these descriptions in the XML type
+      specification file, you might want to use html tags, as allowed in Javadocs.</para>
     
     <para>If you use the Component Description Editor, you can write the html tags normally,
       for instance, <quote>&lt;h1&gt;My Title&lt;/h1&gt;</quote>. The Component
       Descriptor Editor will take care of coverting the actual descriptor source so that it
       has the leading <quote>&lt;</quote> character written as <quote>&amp;lt;</quote>,
       to avoid confusing the XML type specification. For example, &lt;p&gt; would be written
-      in the source of the descriptor as &amp;lt;p&gt;. Any characters used in the JavaDoc
+      in the source of the descriptor as &amp;lt;p&gt;. Any characters used in the Javadoc
       comment must of course be from the character set allowed by the XML type specification.
       These specifications often start with the line &lt;?xml version=<quote>1.0</quote>
       encoding=<quote>UTF-8</quote> ?&gt;, which means you can use any of the UTF-8

Modified: incubator/uima/uimaj/trunk/uima-docbooks/src/docbook/references/ref.pear.xml
URL: http://svn.apache.org/viewvc/incubator/uima/uimaj/trunk/uima-docbooks/src/docbook/references/ref.pear.xml?view=diff&rev=560293&r1=560292&r2=560293
==============================================================================
--- incubator/uima/uimaj/trunk/uima-docbooks/src/docbook/references/ref.pear.xml (original)
+++ incubator/uima/uimaj/trunk/uima-docbooks/src/docbook/references/ref.pear.xml Fri Jul 27 08:59:02 2007
@@ -639,7 +639,7 @@
     
       <para>The example below shows how to use the PEAR APIs to install a 
       PEAR package and access the installed PEAR package data. For more details about the PackageBrowser API, 
-      please refer to the JavaDocs for the org.apache.uima.pear.tools package.
+      please refer to the Javadocs for the org.apache.uima.pear.tools package.
       
       <programlisting>File installDir = new File("/home/user/uimaApp/installedPears");
 File pearFile = new File("/home/user/uimaApp/testpear.pear");
@@ -685,7 +685,7 @@
 	  <para>
 	    To run a PEAR package after it was installed using the PEAR API see the example below. It use the 
 	    generated PEAR specifier that was automatically created during the PEAR installation. 
-	    For more details about the APIs please refer to the JavaDocs.
+	    For more details about the APIs please refer to the Javadocs.
 	  
 
       <programlisting>File installDir = new File("/home/user/uimaApp/installedPears");

Modified: incubator/uima/uimaj/trunk/uima-docbooks/src/docbook/tools/tools.doc_analyzer.xml
URL: http://svn.apache.org/viewvc/incubator/uima/uimaj/trunk/uima-docbooks/src/docbook/tools/tools.doc_analyzer.xml?view=diff&rev=560293&r1=560292&r2=560293
==============================================================================
--- incubator/uima/uimaj/trunk/uima-docbooks/src/docbook/tools/tools.doc_analyzer.xml (original)
+++ incubator/uima/uimaj/trunk/uima-docbooks/src/docbook/tools/tools.doc_analyzer.xml Fri Jul 27 08:59:02 2007
@@ -114,7 +114,7 @@
   The character encoding of the input files.  The default, UTF-8, also works fine for ASCII
 text files.  If you have a different
 encoding, enter it here.  For more
-information on character sets and their names, see the JavaDocs for 
+information on character sets and their names, see the Javadocs for 
   <literal>java.nio.charset.Charset</literal>.</para>
 
 <para>Once you&apos;ve filled in the appropriate values, press the

Modified: incubator/uima/uimaj/trunk/uima-docbooks/src/docbook/tutorials_and_users_guides/annotator_analysis_engine_guide.xml
URL: http://svn.apache.org/viewvc/incubator/uima/uimaj/trunk/uima-docbooks/src/docbook/tutorials_and_users_guides/annotator_analysis_engine_guide.xml?view=diff&rev=560293&r1=560292&r2=560293
==============================================================================
--- incubator/uima/uimaj/trunk/uima-docbooks/src/docbook/tutorials_and_users_guides/annotator_analysis_engine_guide.xml (original)
+++ incubator/uima/uimaj/trunk/uima-docbooks/src/docbook/tutorials_and_users_guides/annotator_analysis_engine_guide.xml Fri Jul 27 08:59:02 2007
@@ -145,12 +145,20 @@
       be imported into your Eclipse workspace; see <olink
         targetdoc="&uima_docs_overview;"
         targetptr="ugr.ovv.eclipse_setup.example_code"/> for instructions on how to do
-      this. Also you may wish to refer to the UIMA SDK JavaDocs located in the <ulink
+      this. 
+      See <olink  targetdoc="&uima_docs_overview;"
+        targetptr="ugr.ovv.eclipse_setup.linking_uima_javadocs"/> for how to attach the UIMA 
+        Javadocs to the jar files.
+      Also you may wish to refer to the UIMA SDK Javadocs located in the <ulink
         url="file:../../api/index.html">docs/api</ulink> directory.</para>
-    <note><para>In Eclipse 3.1, if you highlight a UIMA class or method defined in the UIMA SDK
-    JavaDocs, you can conveniently have Eclipse open the corresponding JavaDoc for that
-    class or method in a browser, by pressing Shift + F2.</para></note>
     
+        <note><para>In Eclipse 3.1, if you highlight a UIMA class or method defined in the UIMA SDK
+    Javadocs, you can conveniently have Eclipse open the corresponding Javadoc for that
+    class or method in a browser, by pressing Shift + F2.</para></note>
+    <note><para>If you downloaded the source distribution for UIMA, you can attach that as
+    well to the library Jar files; for information on how to do this, see
+    <olink targetdoc="&uima_docs_ref;" targetptr="ugr.ref.javadocs"/>.</para></note>
+
     <para>The example annotator that we are going to walk through will detect room numbers for
       rooms where the room numbering scheme follows some simple conventions. In our example,
       there are two kinds of patterns we want to find; here are some examples, together with
@@ -377,7 +385,7 @@
           which the user would have to implement to return <literal>JCas.class</literal>. Then in the
           <literal>process(AbstractCas cas)</literal> method, they would need to typecast
           <literal>cas</literal> to type <literal>JCas</literal>.</para></footnote> This allows you to have
-        your annotator inherit from some other superclass if necessary. If you would like to do this, see the JavaDocs
+        your annotator inherit from some other superclass if necessary. If you would like to do this, see the Javadocs
         for JCasAnnotator for descriptions of the methods you must implement.</para>
       
       <para>Annotator classes need to be public, cannot be declared abstract, and must have public, 0-argument 
@@ -853,7 +861,7 @@
       <section id="ugr.tug.aae.supporting_reconfiguration">
         <title>Supporting Reconfiguration</title>
         
-        <para>If you take a look at the JavaDocs (located in the <ulink
+        <para>If you take a look at the Javadocs (located in the <ulink
             url="api/index.html">docs/api</ulink> directory) for
           <literal>org.apache.uima.analysis_component.AnaysisComponent</literal>
           (which our annotator implements indirectly through JCasAnnotator_ImplBase),
@@ -1030,7 +1038,7 @@
         
         <para>These levels are defined by the Java logging framework, which was
           incorporated into Java as of the 1.4 release level. The levels are defined in the
-          JavaDocs for java.util.logging.Level, and include both logging and tracing
+          Javadocs for java.util.logging.Level, and include both logging and tracing
           levels:
           <itemizedlist spacing="compact">
             <listitem><para>OFF is a special level that can be used to turn off
@@ -1415,7 +1423,7 @@
                 method on the analysis engine, which is then delegated by the framework to
                 all the annotators in the engine. For Collection Processing application,
                 the CPM calls the process method. If the application creates and manages
-                your own Collection Processing Engine via API calls (see JavaDocs), the
+                your own Collection Processing Engine via API calls (see Javadocs), the
                 application calls this on the Collection Processing Engine, and it is
                 delegated by the framework to the components.</entry>
               <entry>Process the CAS, adding and/or modifying elements in it</entry>
@@ -1489,7 +1497,7 @@
         message string. This allows the message string to be easily translated later by
         modifying the message digest file, not the Java code. Also, message strings in the
         digest can contain parameters that are filled in when the exception is thrown. The
-        format of the message digest file is described in the JavaDocs for the Java class
+        format of the message digest file is described in the Javadocs for the Java class
         <literal>java.util.PropertyResourceBundle</literal> and in the load method of
         <literal>java.util.Properties</literal>.</para>
       
@@ -1584,7 +1592,7 @@
       <para>Create a file with the .properties extension, where you declare message keys and
         their associated messages, using the same syntax as shown above for the
         regex_syntax_error exception. The properties file syntax is more completely
-        described in the JavaDocs for the <ulink 
+        described in the Javadocs for the <ulink 
           url="http://java.sun.com/j2se/1.4.1/docs/api/java/util/Properties.html#load(java.io.InputStream)">
         load</ulink> method of the java.util.Properties class.</para>
       
@@ -1598,7 +1606,7 @@
         String constant should have the value
         <literal>org.myorg.myannotator.Messages</literal>. Do not include the
         .properties extension. In Java Internationalization terminology, this is called
-        the Resource Bundle name. For more information see the JavaDocs for the <ulink
+        the Resource Bundle name. For more information see the Javadocs for the <ulink
           url="http://java.sun.com/j2se/1.4.1/docs/api/java/util/PropertyResourceBundle.html">
         PropertyResourceBundle</ulink> class.</para>
       
@@ -1608,7 +1616,7 @@
     MESSAGE_DIGEST, "your_message_name",
     new Object[]{param1,param2,...});</programlisting></para>
       
-      <para>You may also wish to look at the JavaDocs for the UIMAException class.</para>
+      <para>You may also wish to look at the Javadocs for the UIMAException class.</para>
       
       <para>For more information on Java&apos;s internationalization features, see the 
        <ulink url="http://java.sun.com/j2se/1.4/docs/guide/intl/index.html">
@@ -1948,7 +1956,7 @@
         names, which are expected to be output from (produced by) the
         annotator. Annotators may use this to optimize their operations, when possible, for
         those cases where only particular outputs are wanted. The interface to the Result
-        Specification object (see the JavaDocs) allows querying both types and particular
+        Specification object (see the Javadocs) allows querying both types and particular
         features of types.</para>
       
       <para>Sometimes you can specify the Result Specification; othertimes, you cannot

Modified: incubator/uima/uimaj/trunk/uima-docbooks/src/docbook/tutorials_and_users_guides/tug.application.xml
URL: http://svn.apache.org/viewvc/incubator/uima/uimaj/trunk/uima-docbooks/src/docbook/tutorials_and_users_guides/tug.application.xml?view=diff&rev=560293&r1=560292&r2=560293
==============================================================================
--- incubator/uima/uimaj/trunk/uima-docbooks/src/docbook/tutorials_and_users_guides/tug.application.xml (original)
+++ incubator/uima/uimaj/trunk/uima-docbooks/src/docbook/tutorials_and_users_guides/tug.application.xml Fri Jul 27 08:59:02 2007
@@ -38,7 +38,7 @@
     <para>An application developer's starting point for accessing UIMA framework functionality is the
       <literal>org.apache.uima.UIMAFramework</literal> class. The following is a short introduction to some
       important methods on this class. Several of these methods are used in examples in the rest of this chapter. For
-      more details, see the JavaDocs (in the docs/api directory of the UIMA SDK).
+      more details, see the Javadocs (in the docs/api directory of the UIMA SDK).
       
       <itemizedlist>
         <listitem>
@@ -71,7 +71,7 @@
               </listitem>
             </itemizedlist>
             There are other variations of each of these methods that take additional, optional arguments. See the
-            JavaDocs for details. </para>
+            Javadocs for details. </para>
         </listitem>
         
         <listitem>
@@ -256,7 +256,7 @@
           </listitem>
           
           <listitem>
-            <para>The JavaDocs for <literal>org.apache.uima.jcas.JCas</literal>. </para>
+            <para>The Javadocs for <literal>org.apache.uima.jcas.JCas</literal>. </para>
           </listitem>
         </itemizedlist>
         
@@ -278,7 +278,7 @@
           </listitem>
           
           <listitem>
-            <para>The JavaDocs for the <literal>org.apache.uima.cas</literal> and
+            <para>The Javadocs for the <literal>org.apache.uima.cas</literal> and
               <literal>org.apache.uima.cas.text</literal> packages. </para>
           </listitem>
         </itemizedlist>
@@ -463,13 +463,13 @@
       
       <para>To save an XMI representation of a CAS, use the <literal>serialize</literal> method of the class
         <literal>org.apache.uima.util.XmlCasSerializer</literal>. To save an XCAS representation of a CAS,
-        use the class <literal>org.apache.uima.cas.impl.XCASSerializer</literal> instead; see the JavaDocs
+        use the class <literal>org.apache.uima.cas.impl.XCASSerializer</literal> instead; see the Javadocs
         for details.</para>
       
       <para>Both of these external forms can be read back in, using the <literal>deserialize</literal> method of
         the class <literal>org.apache.uima.util.XmlCasDeserializer</literal>. This method deserializes
         into a pre-existing CAS, which you must create ahead of time, pre-set-up with the proper type system. See the
-        JavaDocs for details.</para>
+        Javadocs for details.</para>
     </section>
   </section>
   
@@ -505,7 +505,7 @@
         redefine default behavior related to error handling for each component, turn-on check-pointing, change
         performance characteristics of the CPE, and plug-in a custom timer.</para>
       
-      <para>Below is some example code that illustrates how this works. See the JavaDocs for package
+      <para>Below is some example code that illustrates how this works. See the Javadocs for package
         org.apache.uima.collection.metadata for more details.</para>
       
       
@@ -834,8 +834,8 @@
         <para>More information on the syntax of these kinds of queries, called XML Fragments, can be found in
           documentation for the semantic search engine component on <ulink
             url="http://www.alphaworks.ibm.com/tech/uima"/>. For more information on the Index Build
-          Specification format, see the UIMA JavaDocs for class
-          <literal>org.apache.uima.search.IndexBuildSpecification</literal>. Accessing the JavaDocs is
+          Specification format, see the UIMA Javadocs for class
+          <literal>org.apache.uima.search.IndexBuildSpecification</literal>. Accessing the Javadocs is
           described <olink targetdoc="&uima_docs_ref;" targetptr="ugr.ref.javadocs"/>.</para>
         
       </section>

Modified: incubator/uima/uimaj/trunk/uima-docbooks/src/docbook/tutorials_and_users_guides/tug.cpe.xml
URL: http://svn.apache.org/viewvc/incubator/uima/uimaj/trunk/uima-docbooks/src/docbook/tutorials_and_users_guides/tug.cpe.xml?view=diff&rev=560293&r1=560292&r2=560293
==============================================================================
--- incubator/uima/uimaj/trunk/uima-docbooks/src/docbook/tutorials_and_users_guides/tug.cpe.xml (original)
+++ incubator/uima/uimaj/trunk/uima-docbooks/src/docbook/tutorials_and_users_guides/tug.cpe.xml Fri Jul 27 08:59:02 2007
@@ -384,7 +384,7 @@
         code.</para>
       
       <para>If you need more control over the information in the CPE descriptor, you can
-        manually configure it via its API. See the JavaDocs for package
+        manually configure it via its API. See the Javadocs for package
         <literal>org.apache.uima.collection</literal> for more details.</para>
       
     </section>
@@ -459,7 +459,7 @@
           <literal>org.apache.uima.examples.cpe.FileSystemCollectionReader</literal>
           . If you must inherit from a different superclass, you must ensure that your
           Collection Reader implements the <literal>CollectionReader</literal>
-          interface &ndash; see the JavaDocs for <literal>CollectionReader</literal>
+          interface &ndash; see the Javadocs for <literal>CollectionReader</literal>
           for more details.</para>
       </section>
       

Modified: incubator/uima/uimaj/trunk/uima-docbooks/src/olink/overview_and_setup/htmlsingle-target.db
URL: http://svn.apache.org/viewvc/incubator/uima/uimaj/trunk/uima-docbooks/src/olink/overview_and_setup/htmlsingle-target.db?view=diff&rev=560293&r1=560292&r2=560293
==============================================================================
--- incubator/uima/uimaj/trunk/uima-docbooks/src/olink/overview_and_setup/htmlsingle-target.db (original)
+++ incubator/uima/uimaj/trunk/uima-docbooks/src/olink/overview_and_setup/htmlsingle-target.db Fri Jul 27 08:59:02 2007
@@ -6,11 +6,11 @@
         engines work on the audio “<span class="quote">view</span>”, some on the text
         “<span class="quote">view</span>” and some on both.</ttl><xreftext>Figure 2.7, “Multiple Sofas in support of multi-modal analysis of an audio Stream. Some
         engines work on the audio “<span class="quote">view</span>”, some on the text
-        “<span class="quote">view</span>” and some on both.”</xreftext></obj></div><div element="section" href="#ugr.ovv.conceptual.next_steps" number="2.8" targetptr="ugr.ovv.conceptual.next_steps"><ttl>Next Steps</ttl><xreftext>Section 2.8, “Next Steps”</xreftext></div></div><div element="chapter" href="#ugr.ovv.eclipse_setup" number="3" targetptr="ugr.ovv.eclipse_setup"><ttl>Setting up the Eclipse IDE to work with UIMA</ttl><xreftext>Chapter 3, <i xmlns:xlink="http://www.w3.org/1999/xlink">Setting up the Eclipse IDE to work with UIMA</i></xreftext><div element="section" href="#ugr.ovv.eclipse_setup.installation" number="3.1" targetptr="ugr.ovv.eclipse_setup.installation"><ttl>Installation</ttl><xreftext>Section 3.1, “Installation”</xreftext><div element="section" href="#ugr.ovv.eclipse_setup.install_eclipse" number="3.1.1" targetptr="ugr.ovv.eclipse_setup.install_eclipse"><ttl>Install Eclipse</ttl><xreftext>Section 3.1.1, â�
 �œInstall Eclipse”</xreftext></div><div element="section" href="#ugr.ovv.eclipse_setup.install_emf" number="3.1.2" targetptr="ugr.ovv.eclipse_setup.install_emf"><ttl>Install additional Eclipse component: EMF</ttl><xreftext>Section 3.1.2, “Install additional Eclipse component: EMF”</xreftext><div element="section" href="#ugr.ovv.eclipse_setup.install_emf_shortcut" number="3.1.2.1" targetptr="ugr.ovv.eclipse_setup.install_emf_shortcut"><ttl>EMF Installation Shortcut for Eclipse 3.2</ttl><xreftext>Section 3.1.2.1, “EMF Installation Shortcut for Eclipse 3.2”</xreftext></div></div><div element="section" href="#ugr.ovv.eclipse_setup.install_uima_sdk" number="3.1.3" targetptr="ugr.ovv.eclipse_setup.install_uima_sdk"><ttl>Install the UIMA SDK</ttl><xreftext>Section 3.1.3, “Install the UIMA SDK”</xreftext></div><div element="section" href="#ugr.ovv.eclipse_setup.install_uima_eclipse_plugins" number="3.1.4" targetptr="ugr.ovv.eclipse_setup.
 install_uima_eclipse_plugins"><ttl>Install the UIMA Eclipse Plugins</ttl><xreftext>Section 3.1.4, “Install the UIMA Eclipse Plugins”</xreftext></div><div element="section" href="#ugr.ovv.eclipse_setup.start_eclipse" number="3.1.5" targetptr="ugr.ovv.eclipse_setup.start_eclipse"><ttl>Start Eclipse</ttl><xreftext>Section 3.1.5, “Start Eclipse”</xreftext><div element="section" href="#ugr.ovv.eclipse_setup.special_startup_parameter_clean" number="3.1.5.1" targetptr="ugr.ovv.eclipse_setup.special_startup_parameter_clean"><ttl>Special startup parameter for Eclipse: -clean</ttl><xreftext>Section 3.1.5.1, “Special startup parameter for Eclipse: -clean”</xreftext></div></div></div><div element="section" href="#ugr.ovv.eclipse_setup.example_code" number="3.2" targetptr="ugr.ovv.eclipse_setup.example_code"><ttl>Setting up Eclipse to view Example Code</ttl><xreftext>Section 3.2, “Setting up Eclipse to view Example Code”</xreftext></div
 ><div element="section" href="#ugr.ovv.eclipse_setup.linking_uima_source_code" number="3.3" targetptr="ugr.ovv.eclipse_setup.linking_uima_source_code"><ttl>Attaching UIMA source code</ttl><xreftext>Section 3.3, “Attaching UIMA source code”</xreftext></div><div element="section" href="#ugr.ovv.eclipse_setup.running_external_tools_from_eclipse" number="3.4" targetptr="ugr.ovv.eclipse_setup.running_external_tools_from_eclipse"><ttl>Running external tools from Eclipse</ttl><xreftext>Section 3.4, “Running external tools from Eclipse”</xreftext></div></div><div element="chapter" href="#ugr.faqs" number="4" targetptr="ugr.faqs"><ttl>UIMA Frequently Asked Questions (FAQ's)</ttl><xreftext>Chapter 4, <i xmlns:xlink="http://www.w3.org/1999/xlink">UIMA Frequently Asked Questions (FAQ's)</i></xreftext><obj element="varlistentry" href="#ugr.faqs.what_is_uima" number="" targetptr="ugr.faqs.what_is_uima"><ttl>???TITLE???</ttl><xreftext><span class="bold"><strong
 >What is UIMA?</strong></span></xreftext></obj><obj element="varlistentry" href="#ugr.faqs.pronounce" number="" targetptr="ugr.faqs.pronounce"><ttl>???TITLE???</ttl><xreftext><span class="bold"><strong>How do you pronounce UIMA?</strong></span></xreftext></obj><obj element="varlistentry" href="#ugr.faqs.difference_apache_uima" number="" targetptr="ugr.faqs.difference_apache_uima"><ttl>???TITLE???</ttl><xreftext><span class="bold"><strong>What's the difference between UIMA and the Apache UIMA?</strong></span></xreftext></obj><obj element="varlistentry" href="#ugr.faqs.include_semantic_search" number="" targetptr="ugr.faqs.include_semantic_search"><ttl>???TITLE???</ttl><xreftext><span class="bold"><strong>
+        “<span class="quote">view</span>” and some on both.”</xreftext></obj></div><div element="section" href="#ugr.ovv.conceptual.next_steps" number="2.8" targetptr="ugr.ovv.conceptual.next_steps"><ttl>Next Steps</ttl><xreftext>Section 2.8, “Next Steps”</xreftext></div></div><div element="chapter" href="#ugr.ovv.eclipse_setup" number="3" targetptr="ugr.ovv.eclipse_setup"><ttl>Setting up the Eclipse IDE to work with UIMA</ttl><xreftext>Chapter 3, <i xmlns:xlink="http://www.w3.org/1999/xlink">Setting up the Eclipse IDE to work with UIMA</i></xreftext><div element="section" href="#ugr.ovv.eclipse_setup.installation" number="3.1" targetptr="ugr.ovv.eclipse_setup.installation"><ttl>Installation</ttl><xreftext>Section 3.1, “Installation”</xreftext><div element="section" href="#ugr.ovv.eclipse_setup.install_eclipse" number="3.1.1" targetptr="ugr.ovv.eclipse_setup.install_eclipse"><ttl>Install Eclipse</ttl><xreftext>Section 3.1.1, â�
 �œInstall Eclipse”</xreftext></div><div element="section" href="#ugr.ovv.eclipse_setup.install_emf" number="3.1.2" targetptr="ugr.ovv.eclipse_setup.install_emf"><ttl>Install additional Eclipse component: EMF</ttl><xreftext>Section 3.1.2, “Install additional Eclipse component: EMF”</xreftext><div element="section" href="#ugr.ovv.eclipse_setup.install_emf_shortcut" number="3.1.2.1" targetptr="ugr.ovv.eclipse_setup.install_emf_shortcut"><ttl>EMF Installation Shortcut for Eclipse 3.2</ttl><xreftext>Section 3.1.2.1, “EMF Installation Shortcut for Eclipse 3.2”</xreftext></div></div><div element="section" href="#ugr.ovv.eclipse_setup.install_uima_sdk" number="3.1.3" targetptr="ugr.ovv.eclipse_setup.install_uima_sdk"><ttl>Install the UIMA SDK</ttl><xreftext>Section 3.1.3, “Install the UIMA SDK”</xreftext></div><div element="section" href="#ugr.ovv.eclipse_setup.install_uima_eclipse_plugins" number="3.1.4" targetptr="ugr.ovv.eclipse_setup.
 install_uima_eclipse_plugins"><ttl>Install the UIMA Eclipse Plugins</ttl><xreftext>Section 3.1.4, “Install the UIMA Eclipse Plugins”</xreftext></div><div element="section" href="#ugr.ovv.eclipse_setup.start_eclipse" number="3.1.5" targetptr="ugr.ovv.eclipse_setup.start_eclipse"><ttl>Start Eclipse</ttl><xreftext>Section 3.1.5, “Start Eclipse”</xreftext><div element="section" href="#ugr.ovv.eclipse_setup.special_startup_parameter_clean" number="3.1.5.1" targetptr="ugr.ovv.eclipse_setup.special_startup_parameter_clean"><ttl>Special startup parameter for Eclipse: -clean</ttl><xreftext>Section 3.1.5.1, “Special startup parameter for Eclipse: -clean”</xreftext></div></div></div><div element="section" href="#ugr.ovv.eclipse_setup.example_code" number="3.2" targetptr="ugr.ovv.eclipse_setup.example_code"><ttl>Setting up Eclipse to view Example Code</ttl><xreftext>Section 3.2, “Setting up Eclipse to view Example Code”</xreftext></div
 ><div element="section" href="#ugr.ovv.eclipse_setup.linking_uima_javadocs" number="3.3" targetptr="ugr.ovv.eclipse_setup.linking_uima_javadocs"><ttl>Attaching UIMA Javadocs</ttl><xreftext>Section 3.3, “Attaching UIMA Javadocs”</xreftext></div><div element="section" href="#ugr.ovv.eclipse_setup.running_external_tools_from_eclipse" number="3.4" targetptr="ugr.ovv.eclipse_setup.running_external_tools_from_eclipse"><ttl>Running external tools from Eclipse</ttl><xreftext>Section 3.4, “Running external tools from Eclipse”</xreftext></div></div><div element="chapter" href="#ugr.faqs" number="4" targetptr="ugr.faqs"><ttl>UIMA Frequently Asked Questions (FAQ's)</ttl><xreftext>Chapter 4, <i xmlns:xlink="http://www.w3.org/1999/xlink">UIMA Frequently Asked Questions (FAQ's)</i></xreftext><obj element="varlistentry" href="#ugr.faqs.what_is_uima" number="" targetptr="ugr.faqs.what_is_uima"><ttl>???TITLE???</ttl><xreftext><span class="bold"><strong>What is UIM
 A?</strong></span></xreftext></obj><obj element="varlistentry" href="#ugr.faqs.pronounce" number="" targetptr="ugr.faqs.pronounce"><ttl>???TITLE???</ttl><xreftext><span class="bold"><strong>How do you pronounce UIMA?</strong></span></xreftext></obj><obj element="varlistentry" href="#ugr.faqs.difference_apache_uima" number="" targetptr="ugr.faqs.difference_apache_uima"><ttl>???TITLE???</ttl><xreftext><span class="bold"><strong>What's the difference between UIMA and the Apache UIMA?</strong></span></xreftext></obj><obj element="varlistentry" href="#ugr.faqs.include_semantic_search" number="" targetptr="ugr.faqs.include_semantic_search"><ttl>???TITLE???</ttl><xreftext><span class="bold"><strong>
           Does UIMA include a semantic search engine?
         </strong></span></xreftext></obj><obj element="varlistentry" href="#ugr.faqs.what_is_an_annotation" number="" targetptr="ugr.faqs.what_is_an_annotation"><ttl>???TITLE???</ttl><xreftext><span class="bold"><strong>What is an Annotation?</strong></span></xreftext></obj><obj element="varlistentry" href="#ugr.faqs.what_is_the_cas" number="" targetptr="ugr.faqs.what_is_the_cas"><ttl>???TITLE???</ttl><xreftext><span class="bold"><strong>What is the CAS?</strong></span></xreftext></obj><obj element="varlistentry" href="#ugr.faqs.what_does_the_cas_contain" number="" targetptr="ugr.faqs.what_does_the_cas_contain"><ttl>???TITLE???</ttl><xreftext><span class="bold"><strong>What does the CAS contain?</strong></span></xreftext></obj><obj element="varlistentry" href="#ugr.faqs.only_annotations" number="" targetptr="ugr.faqs.only_annotations"><ttl>???TITLE???</ttl><xreftext><span class="bold"><strong>Does the CAS only contain Annotations?</strong></span></xreftext></obj><obj element
 ="varlistentry" href="#ugr.faqs.just_xml" number="" targetptr="ugr.faqs.just_xml"><ttl>???TITLE???</ttl><xreftext><span class="bold"><strong>Is the CAS just XML?</strong></span></xreftext></obj><obj element="varlistentry" href="#ugr.faqs.what_is_a_type_system" number="" targetptr="ugr.faqs.what_is_a_type_system"><ttl>???TITLE???</ttl><xreftext><span class="bold"><strong>What is a Type System?</strong></span></xreftext></obj><obj element="varlistentry" href="#ugr.faqs.what_is_a_sofa" number="" targetptr="ugr.faqs.what_is_a_sofa"><ttl>???TITLE???</ttl><xreftext><span class="bold"><strong>What is a Sofa?</strong></span></xreftext></obj><obj element="varlistentry" href="#ugr.faqs.annotator_versus_ae" number="" targetptr="ugr.faqs.annotator_versus_ae"><ttl>???TITLE???</ttl><xreftext><span class="bold"><strong>What's the difference between an Annotator and an Analysis
           Engine?</strong></span></xreftext></obj><obj element="varlistentry" href="#ugr.faqs.web_services" number="" targetptr="ugr.faqs.web_services"><ttl>???TITLE???</ttl><xreftext><span class="bold"><strong>Are UIMA analysis engines web services?</strong></span></xreftext></obj><obj element="varlistentry" href="#ugr.faqs.stateless_aes" number="" targetptr="ugr.faqs.stateless_aes"><ttl>???TITLE???</ttl><xreftext><span class="bold"><strong>Do Analysis Engines have to be
           "stateless"?</strong></span></xreftext></obj><obj element="varlistentry" href="#ugr.faqs.uddi" number="" targetptr="ugr.faqs.uddi"><ttl>???TITLE???</ttl><xreftext><span class="bold"><strong>Is engine meta-data compatible with web services and
           UDDI?</strong></span></xreftext></obj><obj element="varlistentry" href="#ugr.faqs.scaling" number="" targetptr="ugr.faqs.scaling"><ttl>???TITLE???</ttl><xreftext><span class="bold"><strong>How do you scale a UIMA application?</strong></span></xreftext></obj><obj element="varlistentry" href="#ugr.faqs.embedding" number="" targetptr="ugr.faqs.embedding"><ttl>???TITLE???</ttl><xreftext><span class="bold"><strong>What does it mean to embed UIMA in systems middleware?</strong></span></xreftext></obj><obj element="varlistentry" href="#ugr.faqs.cpm_versus_cpe" number="" targetptr="ugr.faqs.cpm_versus_cpe"><ttl>???TITLE???</ttl><xreftext><span class="bold"><strong>How is the CPM different from a CPE?</strong></span></xreftext></obj><obj element="varlistentry" href="#ugr.faqs.semantic_search" number="" targetptr="ugr.faqs.semantic_search"><ttl>???TITLE???</ttl><xreftext><span class="bold"><strong>What is Semantic Search and what is its relationship to
           UIMA?</strong></span></xreftext></obj><obj element="varlistentry" href="#ugr.faqs.xml_fragment_not_xml" number="" targetptr="ugr.faqs.xml_fragment_not_xml"><ttl>???TITLE???</ttl><xreftext><span class="bold"><strong>Is an XML Fragment Query valid XML?</strong></span></xreftext></obj><obj element="varlistentry" href="#ugr.faqs.modalities_other_than_text" number="" targetptr="ugr.faqs.modalities_other_than_text"><ttl>???TITLE???</ttl><xreftext><span class="bold"><strong>Does UIMA support modalities other than text?</strong></span></xreftext></obj><obj element="varlistentry" href="#ugr.faqs.compare" number="" targetptr="ugr.faqs.compare"><ttl>???TITLE???</ttl><xreftext><span class="bold"><strong>How does UIMA compare to other similar work?</strong></span></xreftext></obj><obj element="varlistentry" href="#ugr.faqs.open_source" number="" targetptr="ugr.faqs.open_source"><ttl>???TITLE???</ttl><xreftext><span class="bold"><strong>Is UIMA Open Source?</strong></span></xref
 text></obj><obj element="varlistentry" href="#ugr.faqs.levels_required" number="" targetptr="ugr.faqs.levels_required"><ttl>???TITLE???</ttl><xreftext><span class="bold"><strong>What Java level and OS are required for the UIMA SDK?</strong></span></xreftext></obj><obj element="varlistentry" href="#ugr.faqs.building_apps_on_top_of_uima" number="" targetptr="ugr.faqs.building_apps_on_top_of_uima"><ttl>???TITLE???</ttl><xreftext><span class="bold"><strong>Can I build my UIM application on top of UIMA?</strong></span></xreftext></obj><obj element="varlistentry" href="#ugr.faqs.commercial_products" number="" targetptr="ugr.faqs.commercial_products"><ttl>???TITLE???</ttl><xreftext><span class="bold"><strong>Do any commercial products support the UIMA framework or include
-          it as part of their product?</strong></span></xreftext></obj></div><div element="chapter" href="#ugr.issues" number="5" targetptr="ugr.issues"><ttl>Known Issues</ttl><xreftext>Chapter 5, <i xmlns:xlink="http://www.w3.org/1999/xlink">Known Issues</i></xreftext><obj element="varlistentry" href="#ugr.issues.cr_to_xml" number="" targetptr="ugr.issues.cr_to_xml"><ttl>???TITLE???</ttl><xreftext><span class="bold"><strong>Sun Java 1.4.2_12 doesn't serialize CR characters to XML</strong></span></xreftext></obj></div><obj element="glossary" href="#ugr.glossary" number="" targetptr="ugr.glossary"><ttl>Glossary: Key Terms &amp; Concepts</ttl><xreftext>Glossary</xreftext></obj><obj element="glossentry" href="#ugr.glossary.aggregate" number="" targetptr="ugr.glossary.aggregate"><ttl>Aggregate Analysis Engine</ttl><xreftext>Aggregate Analysis Engine</xreftext></obj><obj element="glossentry" href="#ugr.glossary.analysis_engine" number="" targetptr="ugr.glossary.analysis_engine
 "><ttl>Analysis Engine</ttl><xreftext>Analysis Engine</xreftext></obj><obj element="glossentry" href="#ugr.glossary.annotation" number="" targetptr="ugr.glossary.annotation"><ttl>Annotation</ttl><xreftext>Annotation</xreftext></obj><obj element="glossentry" href="#ugr.glossary.annotator" number="" targetptr="ugr.glossary.annotator"><ttl>Annotator</ttl><xreftext>Annotator</xreftext></obj><obj element="glossentry" href="#ugr.glossary.application" number="" targetptr="ugr.glossary.application"><ttl>Application</ttl><xreftext>Application</xreftext></obj><obj element="glossentry" href="#ugr.glossary.apache_uima_java_framework" number="" targetptr="ugr.glossary.apache_uima_java_framework"><ttl>Apache UIMA Java Framework</ttl><xreftext>Apache UIMA Java Framework</xreftext></obj><obj element="glossentry" href="#ugr.glossary.apache_uima_sdk" number="" targetptr="ugr.glossary.apache_uima_sdk"><ttl>Apache UIMA Software Development Kit (SDK)</ttl><xreftext>Apache UIMA Software Developme
 nt Kit (SDK)</xreftext></obj><obj element="glossentry" href="#ugr.glossary.cas" number="" targetptr="ugr.glossary.cas"><ttl>CAS</ttl><xreftext>CAS</xreftext></obj><obj element="glossentry" href="#ugr.glossary.cas_consumer" number="" targetptr="ugr.glossary.cas_consumer"><ttl>CAS Consumer</ttl><xreftext>CAS Consumer</xreftext></obj><obj element="glossentry" href="#ugr.glossary.cas_initializer" number="" targetptr="ugr.glossary.cas_initializer"><ttl>CAS Initializer (deprecated)</ttl><xreftext>CAS Initializer (deprecated)</xreftext></obj><obj element="glossentry" href="#ugr.glossary.cas_multiplier" number="" targetptr="ugr.glossary.cas_multiplier"><ttl>CAS Multiplier</ttl><xreftext>CAS Multiplier</xreftext></obj><obj element="glossentry" href="#ugr.glossary.cas_processor" number="" targetptr="ugr.glossary.cas_processor"><ttl>CAS Processor</ttl><xreftext>CAS Processor</xreftext></obj><obj element="glossentry" href="#ugr.glossary.cas_view" number="" targetptr="ugr.glossary.cas_vi
 ew"><ttl>CAS View</ttl><xreftext>CAS View</xreftext></obj><obj element="glossentry" href="#ugr.glossary.cde" number="" targetptr="ugr.glossary.cde"><ttl>CDE</ttl><xreftext>CDE</xreftext></obj><obj element="glossentry" href="#ugr.glossary.cpe" number="" targetptr="ugr.glossary.cpe"><ttl>Collection Processing Engine (CPE)</ttl><xreftext>Collection Processing Engine (CPE)</xreftext></obj><obj element="glossentry" href="#ugr.glossary.cpm" number="" targetptr="ugr.glossary.cpm"><ttl>Collection Processing Manager (CPM)</ttl><xreftext>Collection Processing Manager (CPM)</xreftext></obj><obj element="glossentry" href="#ugr.glossary.collection_reader" number="" targetptr="ugr.glossary.collection_reader"><ttl>Collection Reader</ttl><xreftext>Collection Reader</xreftext></obj><obj element="glossentry" href="#ugr.glossary.fact_search" number="" targetptr="ugr.glossary.fact_search"><ttl>Fact Search</ttl><xreftext>Fact Search</xreftext></obj><obj element="glossentry" href="#ugr.glossary.f
 eature" number="" targetptr="ugr.glossary.feature"><ttl>Feature</ttl><xreftext>Feature</xreftext></obj><obj element="glossentry" href="#ugr.glossary.flow_controller" number="" targetptr="ugr.glossary.flow_controller"><ttl>Flow Controller</ttl><xreftext>Flow Controller</xreftext></obj><obj element="glossentry" href="#ugr.glossary.hybrid_analysis_engine" number="" targetptr="ugr.glossary.hybrid_analysis_engine"><ttl>Hybrid Analysis Engine</ttl><xreftext>Hybrid Analysis Engine</xreftext></obj><obj element="glossentry" href="#ugr.glossary.index" number="" targetptr="ugr.glossary.index"><ttl>Index</ttl><xreftext>Index</xreftext></obj><obj element="glossentry" href="#ugr.glossary.jcas" number="" targetptr="ugr.glossary.jcas"><ttl>JCas</ttl><xreftext>JCas</xreftext></obj><obj element="glossentry" href="#ugr.glossary.keyword_search" number="" targetptr="ugr.glossary.keyword_search"><ttl>Keyword Search</ttl><xreftext>Keyword Search</xreftext></obj><obj element="glossentry" href="#ugr
 .glossary.knowledge_base" number="" targetptr="ugr.glossary.knowledge_base"><ttl>Knowledge Base</ttl><xreftext>Knowledge Base</xreftext></obj><obj element="glossentry" href="#ugr.glossary.loosely_coupled_analysis_engine" number="" targetptr="ugr.glossary.loosely_coupled_analysis_engine"><ttl>Loosely-Coupled Analysis Engine</ttl><xreftext>Loosely-Coupled Analysis Engine</xreftext></obj><obj element="glossentry" href="#ugr.glossary.ontology" number="" targetptr="ugr.glossary.ontology"><ttl/><xreftext/></obj><obj element="glossentry" href="#ugr.glossary.pear" number="" targetptr="ugr.glossary.pear"><ttl>PEAR</ttl><xreftext>PEAR</xreftext></obj><obj element="glossentry" href="#ugr.glossary.primitive_analysis_engine" number="" targetptr="ugr.glossary.primitive_analysis_engine"><ttl>Primitive Analysis Engine</ttl><xreftext>Primitive Analysis Engine</xreftext></obj><obj element="glossentry" href="#ugr.glossary.semantic_search" number="" targetptr="ugr.glossary.semantic_search"><ttl
 >Semantic Search</ttl><xreftext>Semantic Search</xreftext></obj><obj element="glossentry" href="#ugr.glossary.structured_information" number="" targetptr="ugr.glossary.structured_information"><ttl>Structured Information</ttl><xreftext>Structured Information</xreftext></obj><obj element="glossentry" href="#ugr.glossary.sofa" number="" targetptr="ugr.glossary.sofa"><ttl>Subject of Analysis (Sofa)</ttl><xreftext>Subject of Analysis (Sofa)</xreftext></obj><obj element="glossentry" href="#ugr.glossary.tightly_coupled_analysis_engine" number="" targetptr="ugr.glossary.tightly_coupled_analysis_engine"><ttl>Tightly-Coupled Analysis Engine</ttl><xreftext>Tightly-Coupled Analysis Engine</xreftext></obj><obj element="glossentry" href="#ugr.glossary.type" number="" targetptr="ugr.glossary.type"><ttl>Type</ttl><xreftext>Type</xreftext></obj><obj element="glossentry" href="#ugr.glossary.type_system" number="" targetptr="ugr.glossary.type_system"><ttl>Type System</ttl><xreftext>Type System
 </xreftext></obj><obj element="glossentry" href="#ugr.glossary.unstructured_information" number="" targetptr="ugr.glossary.unstructured_information"><ttl>Unstructured Information</ttl><xreftext>Unstructured Information</xreftext></obj><obj element="glossentry" href="#ugr.glossary.uima" number="" targetptr="ugr.glossary.uima"><ttl>UIMA</ttl><xreftext>UIMA</xreftext></obj><obj element="glossentry" href="#ugr.glossary.uima_java_framework" number="" targetptr="ugr.glossary.uima_java_framework"><ttl>UIMA Java Framework</ttl><xreftext>UIMA Java Framework</xreftext></obj><obj element="glossentry" href="#ugr.glossary.uima_sdk" number="" targetptr="ugr.glossary.uima_sdk"><ttl>UIMA SDK</ttl><xreftext>UIMA SDK</xreftext></obj><obj element="glossentry" href="#ugr.glossary.xcas" number="" targetptr="ugr.glossary.xcas"><ttl>XCAS</ttl><xreftext>XCAS</xreftext></obj><obj element="glossentry" href="#ugr.glossary.xmi" number="" targetptr="ugr.glossary.xmi"><ttl>XML Metadata Interchange (XMI)<
 /ttl><xreftext>XML Metadata Interchange (XMI)</xreftext></obj></div>
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+          it as part of their product?</strong></span></xreftext></obj></div><div element="chapter" href="#ugr.issues" number="5" targetptr="ugr.issues"><ttl>Known Issues</ttl><xreftext>Chapter 5, <i xmlns:xlink="http://www.w3.org/1999/xlink">Known Issues</i></xreftext><obj element="varlistentry" href="#ugr.issues.cr_to_xml" number="" targetptr="ugr.issues.cr_to_xml"><ttl>???TITLE???</ttl><xreftext><span class="bold"><strong>Sun Java 1.4.2_12 doesn't serialize CR characters to XML</strong></span></xreftext></obj><obj element="varlistentry" href="#ugr.issues.jcasgen_java_1.4" number="" targetptr="ugr.issues.jcasgen_java_1.4"><ttl>???TITLE???</ttl><xreftext><span class="bold"><strong>JCasGen merge facility supports Java levels 1.4 or earlier</strong></span></xreftext></obj></div><obj element="glossary" href="#ugr.glossary" number="" targetptr="ugr.glossary"><ttl>Glossary: Key Terms &amp; Concepts</ttl><xreftext>Glossary</xreftext></obj><obj element="glossentry" href="#ugr.g
 lossary.aggregate" number="" targetptr="ugr.glossary.aggregate"><ttl>Aggregate Analysis Engine</ttl><xreftext>Aggregate Analysis Engine</xreftext></obj><obj element="glossentry" href="#ugr.glossary.analysis_engine" number="" targetptr="ugr.glossary.analysis_engine"><ttl>Analysis Engine</ttl><xreftext>Analysis Engine</xreftext></obj><obj element="glossentry" href="#ugr.glossary.annotation" number="" targetptr="ugr.glossary.annotation"><ttl>Annotation</ttl><xreftext>Annotation</xreftext></obj><obj element="glossentry" href="#ugr.glossary.annotator" number="" targetptr="ugr.glossary.annotator"><ttl>Annotator</ttl><xreftext>Annotator</xreftext></obj><obj element="glossentry" href="#ugr.glossary.application" number="" targetptr="ugr.glossary.application"><ttl>Application</ttl><xreftext>Application</xreftext></obj><obj element="glossentry" href="#ugr.glossary.apache_uima_java_framework" number="" targetptr="ugr.glossary.apache_uima_java_framework"><ttl>Apache UIMA Java Framework</
 ttl><xreftext>Apache UIMA Java Framework</xreftext></obj><obj element="glossentry" href="#ugr.glossary.apache_uima_sdk" number="" targetptr="ugr.glossary.apache_uima_sdk"><ttl>Apache UIMA Software Development Kit (SDK)</ttl><xreftext>Apache UIMA Software Development Kit (SDK)</xreftext></obj><obj element="glossentry" href="#ugr.glossary.cas" number="" targetptr="ugr.glossary.cas"><ttl>CAS</ttl><xreftext>CAS</xreftext></obj><obj element="glossentry" href="#ugr.glossary.cas_consumer" number="" targetptr="ugr.glossary.cas_consumer"><ttl>CAS Consumer</ttl><xreftext>CAS Consumer</xreftext></obj><obj element="glossentry" href="#ugr.glossary.cas_initializer" number="" targetptr="ugr.glossary.cas_initializer"><ttl>CAS Initializer (deprecated)</ttl><xreftext>CAS Initializer (deprecated)</xreftext></obj><obj element="glossentry" href="#ugr.glossary.cas_multiplier" number="" targetptr="ugr.glossary.cas_multiplier"><ttl>CAS Multiplier</ttl><xreftext>CAS Multiplier</xreftext></obj><obj e
 lement="glossentry" href="#ugr.glossary.cas_processor" number="" targetptr="ugr.glossary.cas_processor"><ttl>CAS Processor</ttl><xreftext>CAS Processor</xreftext></obj><obj element="glossentry" href="#ugr.glossary.cas_view" number="" targetptr="ugr.glossary.cas_view"><ttl>CAS View</ttl><xreftext>CAS View</xreftext></obj><obj element="glossentry" href="#ugr.glossary.cde" number="" targetptr="ugr.glossary.cde"><ttl>CDE</ttl><xreftext>CDE</xreftext></obj><obj element="glossentry" href="#ugr.glossary.cpe" number="" targetptr="ugr.glossary.cpe"><ttl>Collection Processing Engine (CPE)</ttl><xreftext>Collection Processing Engine (CPE)</xreftext></obj><obj element="glossentry" href="#ugr.glossary.cpm" number="" targetptr="ugr.glossary.cpm"><ttl>Collection Processing Manager (CPM)</ttl><xreftext>Collection Processing Manager (CPM)</xreftext></obj><obj element="glossentry" href="#ugr.glossary.collection_reader" number="" targetptr="ugr.glossary.collection_reader"><ttl>Collection Reade
 r</ttl><xreftext>Collection Reader</xreftext></obj><obj element="glossentry" href="#ugr.glossary.fact_search" number="" targetptr="ugr.glossary.fact_search"><ttl>Fact Search</ttl><xreftext>Fact Search</xreftext></obj><obj element="glossentry" href="#ugr.glossary.feature" number="" targetptr="ugr.glossary.feature"><ttl>Feature</ttl><xreftext>Feature</xreftext></obj><obj element="glossentry" href="#ugr.glossary.flow_controller" number="" targetptr="ugr.glossary.flow_controller"><ttl>Flow Controller</ttl><xreftext>Flow Controller</xreftext></obj><obj element="glossentry" href="#ugr.glossary.hybrid_analysis_engine" number="" targetptr="ugr.glossary.hybrid_analysis_engine"><ttl>Hybrid Analysis Engine</ttl><xreftext>Hybrid Analysis Engine</xreftext></obj><obj element="glossentry" href="#ugr.glossary.index" number="" targetptr="ugr.glossary.index"><ttl>Index</ttl><xreftext>Index</xreftext></obj><obj element="glossentry" href="#ugr.glossary.jcas" number="" targetptr="ugr.glossary.jc
 as"><ttl>JCas</ttl><xreftext>JCas</xreftext></obj><obj element="glossentry" href="#ugr.glossary.keyword_search" number="" targetptr="ugr.glossary.keyword_search"><ttl>Keyword Search</ttl><xreftext>Keyword Search</xreftext></obj><obj element="glossentry" href="#ugr.glossary.knowledge_base" number="" targetptr="ugr.glossary.knowledge_base"><ttl>Knowledge Base</ttl><xreftext>Knowledge Base</xreftext></obj><obj element="glossentry" href="#ugr.glossary.loosely_coupled_analysis_engine" number="" targetptr="ugr.glossary.loosely_coupled_analysis_engine"><ttl>Loosely-Coupled Analysis Engine</ttl><xreftext>Loosely-Coupled Analysis Engine</xreftext></obj><obj element="glossentry" href="#ugr.glossary.ontology" number="" targetptr="ugr.glossary.ontology"><ttl/><xreftext/></obj><obj element="glossentry" href="#ugr.glossary.pear" number="" targetptr="ugr.glossary.pear"><ttl>PEAR</ttl><xreftext>PEAR</xreftext></obj><obj element="glossentry" href="#ugr.glossary.primitive_analysis_engine" num
 ber="" targetptr="ugr.glossary.primitive_analysis_engine"><ttl>Primitive Analysis Engine</ttl><xreftext>Primitive Analysis Engine</xreftext></obj><obj element="glossentry" href="#ugr.glossary.semantic_search" number="" targetptr="ugr.glossary.semantic_search"><ttl>Semantic Search</ttl><xreftext>Semantic Search</xreftext></obj><obj element="glossentry" href="#ugr.glossary.structured_information" number="" targetptr="ugr.glossary.structured_information"><ttl>Structured Information</ttl><xreftext>Structured Information</xreftext></obj><obj element="glossentry" href="#ugr.glossary.sofa" number="" targetptr="ugr.glossary.sofa"><ttl>Subject of Analysis (Sofa)</ttl><xreftext>Subject of Analysis (Sofa)</xreftext></obj><obj element="glossentry" href="#ugr.glossary.tightly_coupled_analysis_engine" number="" targetptr="ugr.glossary.tightly_coupled_analysis_engine"><ttl>Tightly-Coupled Analysis Engine</ttl><xreftext>Tightly-Coupled Analysis Engine</xreftext></obj><obj element="glossentr
 y" href="#ugr.glossary.type" number="" targetptr="ugr.glossary.type"><ttl>Type</ttl><xreftext>Type</xreftext></obj><obj element="glossentry" href="#ugr.glossary.type_system" number="" targetptr="ugr.glossary.type_system"><ttl>Type System</ttl><xreftext>Type System</xreftext></obj><obj element="glossentry" href="#ugr.glossary.unstructured_information" number="" targetptr="ugr.glossary.unstructured_information"><ttl>Unstructured Information</ttl><xreftext>Unstructured Information</xreftext></obj><obj element="glossentry" href="#ugr.glossary.uima" number="" targetptr="ugr.glossary.uima"><ttl>UIMA</ttl><xreftext>UIMA</xreftext></obj><obj element="glossentry" href="#ugr.glossary.uima_java_framework" number="" targetptr="ugr.glossary.uima_java_framework"><ttl>UIMA Java Framework</ttl><xreftext>UIMA Java Framework</xreftext></obj><obj element="glossentry" href="#ugr.glossary.uima_sdk" number="" targetptr="ugr.glossary.uima_sdk"><ttl>UIMA SDK</ttl><xreftext>UIMA SDK</xreftext></obj>
 <obj element="glossentry" href="#ugr.glossary.xcas" number="" targetptr="ugr.glossary.xcas"><ttl>XCAS</ttl><xreftext>XCAS</xreftext></obj><obj element="glossentry" href="#ugr.glossary.xmi" number="" targetptr="ugr.glossary.xmi"><ttl>XML Metadata Interchange (XMI)</ttl><xreftext>XML Metadata Interchange (XMI)</xreftext></obj></div>
\ No newline at end of file