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Posted to commits@airavata.apache.org by di...@apache.org on 2024/08/30 00:39:56 UTC
(airavata-cerebrum) branch main updated (0018245 -> c0adfb4)
This is an automated email from the ASF dual-hosted git repository.
dimuthuupe pushed a change to branch main
in repository https://gitbox.apache.org/repos/asf/airavata-cerebrum.git
from 0018245 Merge pull request #13 from srirampc/main
add fc86dc6 added functionality to connect cell type databases and description files
add c47cf49 update test main
add 8cfd7c0 Merge branch 'apache:main' into main
add f98fa0d use poetry of package management
add fada02e update pandas version
add 675cde1 update README typos
add e8b1155 added Mappers for Mouse model
new c0adfb4 Merge pull request #23 from srirampc/main
The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "add" were already present in the repository and have only
been added to this reference.
Summary of changes:
.gitignore | 2 +
README.md | 17 +
airavata_cerebrum/atlas/data/__init__.py | 3 +
airavata_cerebrum/atlas/data/abc_mouse.py | 88 +-
airavata_cerebrum/atlas/data/abm_celltypes.py | 175 +-
airavata_cerebrum/atlas/data/base.py | 303 +-
airavata_cerebrum/atlas/data/bicn.py | 2 +-
airavata_cerebrum/atlas/model/builder.py | 6 +-
airavata_cerebrum/atlas/model/mousev1.py | 73 +
.../atlas/model/{regions.py => structure.py} | 28 +-
airavata_cerebrum/atlas/operations/netops.py | 67 +-
env_minimal.yml | 26 +
environment.yml | 55 +
pyproject.toml | 49 +-
pyrcfg.json | 5 +
scripts/build_network.py | 258 -
tests/abm_ct.py | 150 +-
tests/abm_ct/description/db_connect.json | 55 +
tests/abm_ct/description/db_connect_output.json | 70667 +++++++++++++++++++
tests/abm_ct/description/db_location_map.json | 196 +
tests/abm_ct/description/db_select_xform.json | 47 +
.../abm_ct/description/db_select_xform_output.json | 17057 +++++
tests/abm_ct/description/network_desc_output.json | 7960 +++
tests/abm_ct/description/user_location_config.json | 52 +
tests/config_net.py | 57 +
tests/config_net/user_location_config.json | 52 +
tests/ct_workflow.json | 104 -
tests/validation_test.py | 118 +
28 files changed, 97007 insertions(+), 665 deletions(-)
create mode 100644 airavata_cerebrum/atlas/model/mousev1.py
rename airavata_cerebrum/atlas/model/{regions.py => structure.py} (90%)
create mode 100644 env_minimal.yml
create mode 100644 environment.yml
create mode 100644 pyrcfg.json
delete mode 100644 scripts/build_network.py
create mode 100644 tests/abm_ct/description/db_connect.json
create mode 100644 tests/abm_ct/description/db_connect_output.json
create mode 100644 tests/abm_ct/description/db_location_map.json
create mode 100644 tests/abm_ct/description/db_select_xform.json
create mode 100644 tests/abm_ct/description/db_select_xform_output.json
create mode 100644 tests/abm_ct/description/network_desc_output.json
create mode 100644 tests/abm_ct/description/user_location_config.json
create mode 100644 tests/config_net.py
create mode 100644 tests/config_net/user_location_config.json
delete mode 100644 tests/ct_workflow.json
create mode 100644 tests/validation_test.py
(airavata-cerebrum) 01/01: Merge pull request #23 from srirampc/main
Posted by di...@apache.org.
This is an automated email from the ASF dual-hosted git repository.
dimuthuupe pushed a commit to branch main
in repository https://gitbox.apache.org/repos/asf/airavata-cerebrum.git
commit c0adfb4ea6c112122b9050e499306d658023fa66
Merge: 0018245 e8b1155
Author: Dimuthu Wannipurage <di...@gmail.com>
AuthorDate: Thu Aug 29 20:39:50 2024 -0400
Merge pull request #23 from srirampc/main
Connections to cell type and abc databases
.gitignore | 2 +
README.md | 17 +
airavata_cerebrum/atlas/data/__init__.py | 3 +
airavata_cerebrum/atlas/data/abc_mouse.py | 88 +-
airavata_cerebrum/atlas/data/abm_celltypes.py | 175 +-
airavata_cerebrum/atlas/data/base.py | 303 +-
airavata_cerebrum/atlas/data/bicn.py | 2 +-
airavata_cerebrum/atlas/model/builder.py | 6 +-
airavata_cerebrum/atlas/model/mousev1.py | 73 +
.../atlas/model/{regions.py => structure.py} | 28 +-
airavata_cerebrum/atlas/operations/netops.py | 67 +-
env_minimal.yml | 26 +
environment.yml | 55 +
pyproject.toml | 49 +-
pyrcfg.json | 5 +
scripts/build_network.py | 258 -
tests/abm_ct.py | 150 +-
tests/abm_ct/description/db_connect.json | 55 +
tests/abm_ct/description/db_connect_output.json | 70667 +++++++++++++++++++
tests/abm_ct/description/db_location_map.json | 196 +
tests/abm_ct/description/db_select_xform.json | 47 +
.../abm_ct/description/db_select_xform_output.json | 17057 +++++
tests/abm_ct/description/network_desc_output.json | 7960 +++
tests/abm_ct/description/user_location_config.json | 52 +
tests/config_net.py | 57 +
tests/config_net/user_location_config.json | 52 +
tests/ct_workflow.json | 104 -
tests/validation_test.py | 118 +
28 files changed, 97007 insertions(+), 665 deletions(-)