Galaxy Gears poster

[Dmitry <re...@list.ru>]

Hello everybody,

I just uploaded the Galaxy Gears poster I presented in May here in 
Barcelona.
http://f1000research.com/posters/4-263

Cheers,

Dmitry

Re: Galaxy Gears poster

[Dmitry <re...@list.ru>]

Hello Stian,

Honestly I am a little bit scared trying to read CWL... :-)

"wsdl-generic" is a branch where splitters were substituted with XML 
tree structure based on XML Schema.
This can be seen as "advanced" splitters that preserve XML Schema 
definitions (Apache XML Schema 2.1).
Technically, the API is based on Swing TreeNode API, but is generalized.
I have a Swing API to manage the tree.

Each node may serialize/deserialize itself based on original XML Schema 
definition (the must) and possible XML node (for deserialization).

XPath are very DUMB - each node may generate the XPath reference. There 
is no any real XPath analyzer - the matching is done as a 
String.equals(). That is OK when the XPath is generated by the same tool 
(like Galaxy Gears).

> ... would the XML inputs/outputs be too complex to use manually
The main problem is that there is no way to provide the reference to the 
XSD component, so the reference is to the XML node.
XPaths may be very large, because there is no good way to represent 
namespaces.
Probably it would be better represented using XPointers, not sure.

There is no need to use the command line, it is OK for Galaxy tools that 
are basically command line wrappers.
The invoker is a usual Taverna's invoker based on JAX-WS (with the same 
API, I think).

Dmitry

On 7/21/2015 12:59 PM, Stian Soiland-Reyes wrote:
> Good stuff!  Did you get any feedback or questions..?
>
> Do you think your wsdl-generic command line tool would be well
> suitable as a docker image - or would the XML inputs/outputs be too
> complex to use manually?
>
>
> As a Docker image it could fit well into the Common Workflow Language
> approach for running WSDL services, and therefore translating Taverna
> workflows to CWL could use this for the wsdl services. (don't ask me
> about the XML splitters though..)
>
>
>
> On 21 July 2015 at 11:48, Dmitry <re...@list.ru> wrote:
>> Hello everybody,
>>
>> I just uploaded the Galaxy Gears poster I presented in May here in
>> Barcelona.
>> http://f1000research.com/posters/4-263
>>
>> Cheers,
>>
>> Dmitry
>
>

Re: Galaxy Gears poster

[Stian Soiland-Reyes <st...@apache.org>]

Good stuff!  Did you get any feedback or questions..?

Do you think your wsdl-generic command line tool would be well
suitable as a docker image - or would the XML inputs/outputs be too
complex to use manually?


As a Docker image it could fit well into the Common Workflow Language
approach for running WSDL services, and therefore translating Taverna
workflows to CWL could use this for the wsdl services. (don't ask me
about the XML splitters though..)



On 21 July 2015 at 11:48, Dmitry <re...@list.ru> wrote:
> Hello everybody,
>
> I just uploaded the Galaxy Gears poster I presented in May here in
> Barcelona.
> http://f1000research.com/posters/4-263
>
> Cheers,
>
> Dmitry



-- 
Stian Soiland-Reyes
Apache Taverna (incubating), Apache Commons RDF (incubating)
http://orcid.org/0000-0001-9842-9718