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Posted to issues@spark.apache.org by "Dongjoon Hyun (JIRA)" <ji...@apache.org> on 2019/06/09 20:17:00 UTC

[jira] [Updated] (SPARK-27759) Do not auto cast array to np.array in vectorized udf

     [ https://issues.apache.org/jira/browse/SPARK-27759?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]

Dongjoon Hyun updated SPARK-27759:
----------------------------------
    Affects Version/s:     (was: 2.4.3)
                       3.0.0

> Do not auto cast array<double> to np.array in vectorized udf
> ------------------------------------------------------------
>
>                 Key: SPARK-27759
>                 URL: https://issues.apache.org/jira/browse/SPARK-27759
>             Project: Spark
>          Issue Type: Improvement
>          Components: PySpark, SQL
>    Affects Versions: 3.0.0
>            Reporter: colin fang
>            Priority: Minor
>
> {code:java}
> pd_df = pd.DataFrame(\{'x': np.random.rand(11, 3, 5).tolist()})
> df = spark.createDataFrame(pd_df).cache()
> {code}
> Each element in x is a list of list, as expected.
> {code:java}
> df.toPandas()['x']
> # 0 [[0.08669612955959993, 0.32624430522634495, 0.... 
> # 1 [[0.29838166086156914,  0.008550172904516762, 0... 
> # 2 [[0.641304534802928, 0.2392047548381877, 0.555...
> {code}
>  
> {code:java}
> def my_udf(x):
>     # Hack to see what's inside a udf
>     raise Exception(x.values.shape, x.values[0].shape, x.values[0][0].shape, np.stack(x.values).shape)
>     return pd.Series(x.values)
> my_udf = pandas_udf(dot_product, returnType=DoubleType())
> df.withColumn('y', my_udf('x')).show()
> Exception: ((2,), (3,), (5,), (2, 3))
> {code}
>  
> A batch (2) of `x` is converted to pd.Series, however, each element in the pd.Series is now a numpy 1d array of numpy 1d array. It is inconvenient to work with nested 1d numpy array in practice in a udf.
>  
> For example, I need a ndarray of shape (2, 3, 5) in udf, so that I can make use of the numpy vectorized operations. If I was given a list of list intact, I can simply do `np.stack(x.values)`. However, it doesn't work here as what I received is a nested numpy 1d array.
>  
>  



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