You are viewing a plain text version of this content. The canonical link for it is here.
Posted to commits@ctakes.apache.org by se...@apache.org on 2017/03/13 13:38:16 UTC
svn commit: r1786685 - in /ctakes/trunk:
ctakes-chunker-res/src/main/resources/org/apache/ctakes/chunker/pipeline/
ctakes-clinical-pipeline-res/src/main/resources/org/apache/ctakes/clinical/pipeline/
ctakes-core/src/main/java/org/apache/ctakes/core/pip...
Author: seanfinan
Date: Mon Mar 13 13:38:16 2017
New Revision: 1786685
URL: http://svn.apache.org/viewvc?rev=1786685&view=rev
Log:
StandardOptions : add -l for cli dictionary lookup configuration xml file, default ""
DefaultFastPipeline.piper : add Chunker sub pipe, remove directory paths
Added:
ctakes/trunk/ctakes-chunker-res/src/main/resources/org/apache/ctakes/chunker/pipeline/ChunkerSubPipe.piper
- copied unchanged from r1786684, ctakes/trunk/ctakes-chunker-res/src/main/resources/org/apache/ctakes/chunker/pipeline/DefaultChunkerSubPipe.piper
Removed:
ctakes/trunk/ctakes-chunker-res/src/main/resources/org/apache/ctakes/chunker/pipeline/DefaultChunkerSubPipe.piper
Modified:
ctakes/trunk/ctakes-clinical-pipeline-res/src/main/resources/org/apache/ctakes/clinical/pipeline/DefaultFastPipeline.piper
ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/pipeline/StandardOptions.java
Modified: ctakes/trunk/ctakes-clinical-pipeline-res/src/main/resources/org/apache/ctakes/clinical/pipeline/DefaultFastPipeline.piper
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-clinical-pipeline-res/src/main/resources/org/apache/ctakes/clinical/pipeline/DefaultFastPipeline.piper?rev=1786685&r1=1786684&r2=1786685&view=diff
==============================================================================
--- ctakes/trunk/ctakes-clinical-pipeline-res/src/main/resources/org/apache/ctakes/clinical/pipeline/DefaultFastPipeline.piper (original)
+++ ctakes/trunk/ctakes-clinical-pipeline-res/src/main/resources/org/apache/ctakes/clinical/pipeline/DefaultFastPipeline.piper Mon Mar 13 13:38:16 2017
@@ -1,14 +1,17 @@
// Commands and parameters to create a default plaintext document processing pipeline with UMLS lookup
// Load a simple token processing pipeline from another pipeline file
-load org/apache/ctakes/core/pipeline/DefaultTokenizerPipeline.piper
+load DefaultTokenizerPipeline.piper
// Add non-core annotators
add ContextDependentTokenizerAnnotator
addDescription POSTagger
+// Add Chunkers
+load ChunkerSubPipe.piper
+
// Default fast dictionary lookup
add DefaultJCasTermAnnotator
// Add Cleartk Entity Attribute annotators
-load org/apache/ctakes/assertion/pipeline/AttributeCleartkSubPipe.piper
+load AttributeCleartkSubPipe.piper
Modified: ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/pipeline/StandardOptions.java
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/pipeline/StandardOptions.java?rev=1786685&r1=1786684&r2=1786685&view=diff
==============================================================================
--- ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/pipeline/StandardOptions.java (original)
+++ ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/pipeline/StandardOptions.java Mon Mar 13 13:38:16 2017
@@ -39,7 +39,8 @@ interface StandardOptions {
@Option(
shortName = "l",
longName = "lookupXml",
- description = "path to the xml file containing information for dictionary lookup configuration." )
+ description = "path to the xml file containing information for dictionary lookup configuration.",
+ defaultValue = "" )
String getLookupXml();
@Option(