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Posted to commits@ctakes.apache.org by se...@apache.org on 2017/03/13 13:38:16 UTC

svn commit: r1786685 - in /ctakes/trunk: ctakes-chunker-res/src/main/resources/org/apache/ctakes/chunker/pipeline/ ctakes-clinical-pipeline-res/src/main/resources/org/apache/ctakes/clinical/pipeline/ ctakes-core/src/main/java/org/apache/ctakes/core/pip...

Author: seanfinan
Date: Mon Mar 13 13:38:16 2017
New Revision: 1786685

URL: http://svn.apache.org/viewvc?rev=1786685&view=rev
Log:
StandardOptions : add -l for cli dictionary lookup configuration xml file, default ""
DefaultFastPipeline.piper : add Chunker sub pipe, remove directory paths

Added:
    ctakes/trunk/ctakes-chunker-res/src/main/resources/org/apache/ctakes/chunker/pipeline/ChunkerSubPipe.piper
      - copied unchanged from r1786684, ctakes/trunk/ctakes-chunker-res/src/main/resources/org/apache/ctakes/chunker/pipeline/DefaultChunkerSubPipe.piper
Removed:
    ctakes/trunk/ctakes-chunker-res/src/main/resources/org/apache/ctakes/chunker/pipeline/DefaultChunkerSubPipe.piper
Modified:
    ctakes/trunk/ctakes-clinical-pipeline-res/src/main/resources/org/apache/ctakes/clinical/pipeline/DefaultFastPipeline.piper
    ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/pipeline/StandardOptions.java

Modified: ctakes/trunk/ctakes-clinical-pipeline-res/src/main/resources/org/apache/ctakes/clinical/pipeline/DefaultFastPipeline.piper
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-clinical-pipeline-res/src/main/resources/org/apache/ctakes/clinical/pipeline/DefaultFastPipeline.piper?rev=1786685&r1=1786684&r2=1786685&view=diff
==============================================================================
--- ctakes/trunk/ctakes-clinical-pipeline-res/src/main/resources/org/apache/ctakes/clinical/pipeline/DefaultFastPipeline.piper (original)
+++ ctakes/trunk/ctakes-clinical-pipeline-res/src/main/resources/org/apache/ctakes/clinical/pipeline/DefaultFastPipeline.piper Mon Mar 13 13:38:16 2017
@@ -1,14 +1,17 @@
 // Commands and parameters to create a default plaintext document processing pipeline with UMLS lookup
 
 // Load a simple token processing pipeline from another pipeline file
-load org/apache/ctakes/core/pipeline/DefaultTokenizerPipeline.piper
+load DefaultTokenizerPipeline.piper
 
 // Add non-core annotators
 add ContextDependentTokenizerAnnotator
 addDescription POSTagger
 
+// Add Chunkers
+load ChunkerSubPipe.piper
+
 // Default fast dictionary lookup
 add DefaultJCasTermAnnotator
 
 // Add Cleartk Entity Attribute annotators
-load org/apache/ctakes/assertion/pipeline/AttributeCleartkSubPipe.piper
+load AttributeCleartkSubPipe.piper

Modified: ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/pipeline/StandardOptions.java
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/pipeline/StandardOptions.java?rev=1786685&r1=1786684&r2=1786685&view=diff
==============================================================================
--- ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/pipeline/StandardOptions.java (original)
+++ ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/pipeline/StandardOptions.java Mon Mar 13 13:38:16 2017
@@ -39,7 +39,8 @@ interface StandardOptions {
    @Option(
          shortName = "l",
          longName = "lookupXml",
-         description = "path to the xml file containing information for dictionary lookup configuration." )
+         description = "path to the xml file containing information for dictionary lookup configuration.",
+         defaultValue = "" )
    String getLookupXml();
 
    @Option(