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Posted to dev@ctakes.apache.org by Ks Sunder <sh...@gmail.com> on 2017/11/29 15:26:59 UTC
Regarding cTakes version upadtion
Hi,
What are the steps need to change ctakes 3.x version to ctakes 4 version ,
and can I change maven dependency..?
Please help me.
Regards,
Shyam k.
RE: Regarding cTakes version upadtion [EXTERNAL]
Posted by "Finan, Sean" <Se...@childrens.harvard.edu>.
I just checked the wiki on 3.2 for information on setting the umls values. "[it] has been weighed, it has been measured, and it has been found wanting." We need to remedy this.
There are instructions here
https://cwiki.apache.org/confluence/display/CTAKES/cTAKES+3.2+User+Install+Guide#cTAKES3.2UserInstallGuide-(Recommended)AddUMLSaccessrights
but as it is so important it should have its own page with pervasive links.
In the 4.0 docs it should be much more obvious. It is on the page about the Default Clinical Pipeline:
https://cwiki.apache.org/confluence/display/CTAKES/Default+Clinical+Pipeline
and the bottom of the page for piper files:
https://cwiki.apache.org/confluence/display/CTAKES/Piper+Files
Sean
-----Original Message-----
From: Ks Sunder [mailto:shyam769@gmail.com]
Sent: Friday, December 01, 2017 8:31 AM
To: dev@ctakes.apache.org
Subject: Re: Regarding cTakes version upadtion [EXTERNAL]
Hi,
when i am using cTakes3.2.2 after maven install , cTakes all modules
available at src folder in that i changed username and pwd.
but cTakes4.0 is jsut created war file of cTakes modules .. i am confused
how can change username and pwd in cTakes4.0..?
can we have any properties files for that...?
please help me..
On Thu, Nov 30, 2017 at 7:42 PM, Finan, Sean <
Sean.Finan@childrens.harvard.edu> wrote:
> Hi Shyam k,
>
> Are you sure that you changed your umls credentials? How did you change
> them? It doesn't look like your change went through since your error is
> still:
> > is not valid for user CHANGE_ME with CHANGE_ME
>
> Sean
>
> -----Original Message-----
> From: Ks Sunder [mailto:shyam769@gmail.com]
> Sent: Thursday, November 30, 2017 3:41 AM
> To: dev@ctakes.apache.org
> Subject: Re: Regarding cTakes version upadtion [EXTERNAL]
>
> Hi,
>
> I commented in Pipeline :
> \org\apache\ctakes\temporal\ae\eventevent\20150630\model.jar
>
> stitll i am getting this error : UMLS Account at
> https://urldefense.proofpoint.com/v2/url?u=https-3A__uts-
> 2Dws.nlm.nih.gov_restful_isValidUMLSUser&d=DwIBaQ&c=qS4goWBT7poplM69zy_
> 3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=
> GMS7z6wXokcMqQHAUda8o3XxG1M868mv_PRYbKeB0Zc&s=
> le1pEnmgizyhdYQnzNGbDFgXFy53cl2Jj51E-IjkQck&e= is not valid for user
> CHANGE_ME with CHANGE_ME ,
> I changed UMLusername and password its notworking, but cTakes 3.x is
> working properly through current Uml credentials,
> we need any other credential for cTakes4.0...?
>
> Error////////////////////////////////////////////////////////
>
>
> 30 Nov 2017 14:07:16 INFO DictionaryDescriptorParser - Parsing dictionary
> specifications:
> 30 Nov 2017 14:07:16 INFO UmlsUserApprover - Checking UMLS Account at
> https://urldefense.proofpoint.com/v2/url?u=https-3A__uts-
> 2Dws.nlm.nih.gov_restful_isValidUMLSUser&d=DwIBaQ&c=qS4goWBT7poplM69zy_
> 3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=
> GMS7z6wXokcMqQHAUda8o3XxG1M868mv_PRYbKeB0Zc&s=
> le1pEnmgizyhdYQnzNGbDFgXFy53cl2Jj51E-IjkQck&e= for user CHANGE_ME:
> ........30 Nov 2017 14:07:18 ERROR UmlsUserApprover - UMLS Account at
> https://urldefense.proofpoint.com/v2/url?u=https-3A__uts-
> 2Dws.nlm.nih.gov_restful_isValidUMLSUser&d=DwIBaQ&c=qS4goWBT7poplM69zy_
> 3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=
> GMS7z6wXokcMqQHAUda8o3XxG1M868mv_PRYbKeB0Zc&s=
> le1pEnmgizyhdYQnzNGbDFgXFy53cl2Jj51E-IjkQck&e= is not valid for user
> CHANGE_ME with CHANGE_ME
>
> 2017-11-30 14:07:18.867:WARN:/:unavailable
> org.apache.uima.resource.ResourceInitializationException: Initialization
> of
> annotator class
> "org.apache.ctakes.dictionary.lookup2.ae.DefaultJCasTermAnnotator" failed.
> (Descriptor: <unknown>)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:252)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initialize(PrimitiveAnalysisEngine_impl.java:156)
> at
> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(
> AnalysisEngineFactory_impl.java:94)
> at
> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(
> CompositeResourceFactory_impl.java:62)
> at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
> at
> org.apache.uima.UIMAFramework.produceAnalysisEngine(
> UIMAFramework.java:387)
> at
> org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(
> AggregateAnalysisEngine_impl.java:431)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initialize(AggregateAnalysisEngine_impl.java:185)
> at
> org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(
> AnalysisEngineFactory.java:711)
> at
> org.apache.uima.fit.factory.AggregateBuilder.createAggregate(
> AggregateBuilder.java:207)
> at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
> at
> org.eclipse.jetty.servlet.ServletHolder.initServlet(
> ServletHolder.java:532)
> at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.servlet.ServletHandler.initialize(
> ServletHandler.java:791)
> at
> org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> ServletContextHandler.java:265)
> at
> org.eclipse.jetty.webapp.WebAppContext.startContext(
> WebAppContext.java:1242)
> at
> org.eclipse.jetty.server.handler.ContextHandler.
> doStart(ContextHandler.java:717)
> at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.server.handler.HandlerWrapper.
> doStart(HandlerWrapper.java:95)
> at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(
> JettyEmbeddedAdapter.java:67)
> at
> net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> launch(AbstractJettyLauncherMain.java:84)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> main(JettyEmbeddedLauncherMain.java:42)
> Caused by:
> org.apache.uima.resource.ResourceInitializationException: EXCEPTION
> MESSAGE
> LOCALIZATION FAILED: java.util.MissingResourceException: Can't find
> resource for bundle java.util.PropertyResourceBundle, key Could not
> construct
> org.apache.ctakes.dictionary.lookup2.dictionary.UmlsJdbcRareWordDictionary
> at
> org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.
> initialize(AbstractJCasTermAnnotator.java:131)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initialize(PrimitiveAnalysisEngine_impl.java:156)
> at
> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(
> AnalysisEngineFactory_impl.java:94)
> at
> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(
> CompositeResourceFactory_impl.java:62)
> at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
> at
> org.apache.uima.UIMAFramework.produceAnalysisEngine(
> UIMAFramework.java:387)
> at
> org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(
> AggregateAnalysisEngine_impl.java:431)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initialize(AggregateAnalysisEngine_impl.java:185)
> at
> org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(
> AnalysisEngineFactory.java:711)
> at
> org.apache.uima.fit.factory.AggregateBuilder.createAggregate(
> AggregateBuilder.java:207)
> at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
> at
> org.eclipse.jetty.servlet.ServletHolder.initServlet(
> ServletHolder.java:532)
> at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.servlet.ServletHandler.initialize(
> ServletHandler.java:791)
> at
> org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> ServletContextHandler.java:265)
> at
> org.eclipse.jetty.webapp.WebAppContext.startContext(
> WebAppContext.java:1242)
> at
> org.eclipse.jetty.server.handler.ContextHandler.
> doStart(ContextHandler.java:717)
> at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.server.handler.HandlerWrapper.
> doStart(HandlerWrapper.java:95)
> at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(
> JettyEmbeddedAdapter.java:67)
> at
> net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> launch(AbstractJettyLauncherMain.java:84)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> main(JettyEmbeddedLauncherMain.java:42)
> Caused by:
> org.apache.uima.analysis_engine.annotator.AnnotatorContextException:
> EXCEPTION MESSAGE LOCALIZATION FAILED: java.util.MissingResourceException:
> Can't find resource for bundle java.util.PropertyResourceBundle, key Could
> not construct
> org.apache.ctakes.dictionary.lookup2.dictionary.UmlsJdbcRareWordDictionary
> at
> org.apache.ctakes.dictionary.lookup2.dictionary.
> DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser.
> java:199)
> at
> org.apache.ctakes.dictionary.lookup2.dictionary.
> DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser.
> java:156)
> at
> org.apache.ctakes.dictionary.lookup2.dictionary.
> DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.
> java:128)
> at
> org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.
> initialize(AbstractJCasTermAnnotator.java:129)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initialize(PrimitiveAnalysisEngine_impl.java:156)
> at
> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(
> AnalysisEngineFactory_impl.java:94)
> at
> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(
> CompositeResourceFactory_impl.java:62)
> at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
> at
> org.apache.uima.UIMAFramework.produceAnalysisEngine(
> UIMAFramework.java:387)
> at
> org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(
> AggregateAnalysisEngine_impl.java:431)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initialize(AggregateAnalysisEngine_impl.java:185)
> at
> org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(
> AnalysisEngineFactory.java:711)
> at
> org.apache.uima.fit.factory.AggregateBuilder.createAggregate(
> AggregateBuilder.java:207)
> at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
> at
> org.eclipse.jetty.servlet.ServletHolder.initServlet(
> ServletHolder.java:532)
> at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.servlet.ServletHandler.initialize(
> ServletHandler.java:791)
> at
> org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> ServletContextHandler.java:265)
> at
> org.eclipse.jetty.webapp.WebAppContext.startContext(
> WebAppContext.java:1242)
> at
> org.eclipse.jetty.server.handler.ContextHandler.
> doStart(ContextHandler.java:717)
> at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.server.handler.HandlerWrapper.
> doStart(HandlerWrapper.java:95)
> at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(
> JettyEmbeddedAdapter.java:67)
> at
> net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> launch(AbstractJettyLauncherMain.java:84)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> main(JettyEmbeddedLauncherMain.java:42)
> Caused by:
> java.lang.reflect.InvocationTargetException
> at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
> at sun.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source)
> at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown
> Source)
> at java.lang.reflect.Constructor.newInstance(Unknown Source)
> at
> org.apache.ctakes.dictionary.lookup2.dictionary.
> DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser.
> java:196)
> at
> org.apache.ctakes.dictionary.lookup2.dictionary.
> DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser.
> java:156)
> at
> org.apache.ctakes.dictionary.lookup2.dictionary.
> DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.
> java:128)
> at
> org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.
> initialize(AbstractJCasTermAnnotator.java:129)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initialize(PrimitiveAnalysisEngine_impl.java:156)
> at
> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(
> AnalysisEngineFactory_impl.java:94)
> at
> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(
> CompositeResourceFactory_impl.java:62)
> at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
> at
> org.apache.uima.UIMAFramework.produceAnalysisEngine(
> UIMAFramework.java:387)
> at
> org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(
> AggregateAnalysisEngine_impl.java:431)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initialize(AggregateAnalysisEngine_impl.java:185)
> at
> org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(
> AnalysisEngineFactory.java:711)
> at
> org.apache.uima.fit.factory.AggregateBuilder.createAggregate(
> AggregateBuilder.java:207)
> at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
> at
> org.eclipse.jetty.servlet.ServletHolder.initServlet(
> ServletHolder.java:532)
> at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.servlet.ServletHandler.initialize(
> ServletHandler.java:791)
> at
> org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> ServletContextHandler.java:265)
> at
> org.eclipse.jetty.webapp.WebAppContext.startContext(
> WebAppContext.java:1242)
> at
> org.eclipse.jetty.server.handler.ContextHandler.
> doStart(ContextHandler.java:717)
> at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.server.handler.HandlerWrapper.
> doStart(HandlerWrapper.java:95)
> at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(
> JettyEmbeddedAdapter.java:67)
> at
> net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> launch(AbstractJettyLauncherMain.java:84)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> main(JettyEmbeddedLauncherMain.java:42)
> Caused by:
> java.sql.SQLException: Invalid User for UMLS dictionary sno_rx_16abTerms
> at
> org.apache.ctakes.dictionary.lookup2.dictionary.
> UmlsJdbcRareWordDictionary.<init>(UmlsJdbcRareWordDictionary.java:29)
> at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
> at sun.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source)
> at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown
> Source)
> at java.lang.reflect.Constructor.newInstance(Unknown Source)
> at
> org.apache.ctakes.dictionary.lookup2.dictionary.
> DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser.
> java:196)
> at
> org.apache.ctakes.dictionary.lookup2.dictionary.
> DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser.
> java:156)
> at
> org.apache.ctakes.dictionary.lookup2.dictionary.
> DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.
> java:128)
> at
> org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.
> initialize(AbstractJCasTermAnnotator.java:129)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initialize(PrimitiveAnalysisEngine_impl.java:156)
> at
> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(
> AnalysisEngineFactory_impl.java:94)
> at
> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(
> CompositeResourceFactory_impl.java:62)
> at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
> at
> org.apache.uima.UIMAFramework.produceAnalysisEngine(
> UIMAFramework.java:387)
> at
> org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(
> AggregateAnalysisEngine_impl.java:431)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initialize(AggregateAnalysisEngine_impl.java:185)
> at
> org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(
> AnalysisEngineFactory.java:711)
> at
> org.apache.uima.fit.factory.AggregateBuilder.createAggregate(
> AggregateBuilder.java:207)
> at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
> at
> org.eclipse.jetty.servlet.ServletHolder.initServlet(
> ServletHolder.java:532)
> at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.servlet.ServletHandler.initialize(
> ServletHandler.java:791)
> at
> org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> ServletContextHandler.java:265)
> at
> org.eclipse.jetty.webapp.WebAppContext.startContext(
> WebAppContext.java:1242)
> at
> org.eclipse.jetty.server.handler.ContextHandler.
> doStart(ContextHandler.java:717)
> at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.server.handler.HandlerWrapper.
> doStart(HandlerWrapper.java:95)
> at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(
> JettyEmbeddedAdapter.java:67)
> at
> net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> launch(AbstractJettyLauncherMain.java:84)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> main(JettyEmbeddedLauncherMain.java:42)
> 2017-11-30 14:07:18.872:WARN:oejuc.AbstractLifeCycle:FAILED
> cTakesWebClass:
> javax.servlet.ServletException:
> org.apache.uima.resource.ResourceInitializationException: Initialization
> of
> annotator class
> "org.apache.ctakes.dictionary.lookup2.ae.DefaultJCasTermAnnotator" failed.
> (Descriptor: <unknown>)
> javax.servlet.ServletException:
> org.apache.uima.resource.ResourceInitializationException: Initialization
> of
> annotator class
> "org.apache.ctakes.dictionary.lookup2.ae.DefaultJCasTermAnnotator" failed.
> (Descriptor: <unknown>)
> at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:38)
> at
> org.eclipse.jetty.servlet.ServletHolder.initServlet(
> ServletHolder.java:532)
> at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.servlet.ServletHandler.initialize(
> ServletHandler.java:791)
> at
> org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> ServletContextHandler.java:265)
> at
> org.eclipse.jetty.webapp.WebAppContext.startContext(
> WebAppContext.java:1242)
> at
> org.eclipse.jetty.server.handler.ContextHandler.
> doStart(ContextHandler.java:717)
> at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.server.handler.HandlerWrapper.
> doStart(HandlerWrapper.java:95)
> at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(
> JettyEmbeddedAdapter.java:67)
> at
> net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> launch(AbstractJettyLauncherMain.java:84)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> main(JettyEmbeddedLauncherMain.java:42)
> Caused by:
> org.apache.uima.resource.ResourceInitializationException: Initialization
> of
> annotator class
> "org.apache.ctakes.dictionary.lookup2.ae.DefaultJCasTermAnnotator" failed.
> (Descriptor: <unknown>)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:252)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initialize(PrimitiveAnalysisEngine_impl.java:156)
> at
> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(
> AnalysisEngineFactory_impl.java:94)
> at
> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(
> CompositeResourceFactory_impl.java:62)
> at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
> at
> org.apache.uima.UIMAFramework.produceAnalysisEngine(
> UIMAFramework.java:387)
> at
> org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(
> AggregateAnalysisEngine_impl.java:431)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initialize(AggregateAnalysisEngine_impl.java:185)
> at
> org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(
> AnalysisEngineFactory.java:711)
> at
> org.apache.uima.fit.factory.AggregateBuilder.createAggregate(
> AggregateBuilder.java:207)
> at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
> at
> org.eclipse.jetty.servlet.ServletHolder.initServlet(
> ServletHolder.java:532)
> at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.servlet.ServletHandler.initialize(
> ServletHandler.java:791)
> at
> org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> ServletContextHandler.java:265)
> at
> org.eclipse.jetty.webapp.WebAppContext.startContext(
> WebAppContext.java:1242)
> at
> org.eclipse.jetty.server.handler.ContextHandler.
> doStart(ContextHandler.java:717)
> at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.server.handler.HandlerWrapper.
> doStart(HandlerWrapper.java:95)
> at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(
> JettyEmbeddedAdapter.java:67)
> at
> net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> launch(AbstractJettyLauncherMain.java:84)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> main(JettyEmbeddedLauncherMain.java:42)
> Caused by:
> org.apache.uima.resource.ResourceInitializationException: EXCEPTION
> MESSAGE
> LOCALIZATION FAILED: java.util.MissingResourceException: Can't find
> resource for bundle java.util.PropertyResourceBundle, key Could not
> construct
> org.apache.ctakes.dictionary.lookup2.dictionary.UmlsJdbcRareWordDictionary
> at
> org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.
> initialize(AbstractJCasTermAnnotator.java:131)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initialize(PrimitiveAnalysisEngine_impl.java:156)
> at
> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(
> AnalysisEngineFactory_impl.java:94)
> at
> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(
> CompositeResourceFactory_impl.java:62)
> at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
> at
> org.apache.uima.UIMAFramework.produceAnalysisEngine(
> UIMAFramework.java:387)
> at
> org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(
> AggregateAnalysisEngine_impl.java:431)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initialize(AggregateAnalysisEngine_impl.java:185)
> at
> org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(
> AnalysisEngineFactory.java:711)
> at
> org.apache.uima.fit.factory.AggregateBuilder.createAggregate(
> AggregateBuilder.java:207)
> at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
> at
> org.eclipse.jetty.servlet.ServletHolder.initServlet(
> ServletHolder.java:532)
> at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.servlet.ServletHandler.initialize(
> ServletHandler.java:791)
> at
> org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> ServletContextHandler.java:265)
> at
> org.eclipse.jetty.webapp.WebAppContext.startContext(
> WebAppContext.java:1242)
> at
> org.eclipse.jetty.server.handler.ContextHandler.
> doStart(ContextHandler.java:717)
> at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.server.handler.HandlerWrapper.
> doStart(HandlerWrapper.java:95)
> at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(
> JettyEmbeddedAdapter.java:67)
> at
> net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> launch(AbstractJettyLauncherMain.java:84)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> main(JettyEmbeddedLauncherMain.java:42)
> Caused by:
> org.apache.uima.analysis_engine.annotator.AnnotatorContextException:
> EXCEPTION MESSAGE LOCALIZATION FAILED: java.util.MissingResourceException:
> Can't find resource for bundle java.util.PropertyResourceBundle, key Could
> not construct
> org.apache.ctakes.dictionary.lookup2.dictionary.UmlsJdbcRareWordDictionary
> at
> org.apache.ctakes.dictionary.lookup2.dictionary.
> DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser.
> java:199)
> at
> org.apache.ctakes.dictionary.lookup2.dictionary.
> DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser.
> java:156)
> at
> org.apache.ctakes.dictionary.lookup2.dictionary.
> DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.
> java:128)
> at
> org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.
> initialize(AbstractJCasTermAnnotator.java:129)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initialize(PrimitiveAnalysisEngine_impl.java:156)
> at
> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(
> AnalysisEngineFactory_impl.java:94)
> at
> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(
> CompositeResourceFactory_impl.java:62)
> at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
> at
> org.apache.uima.UIMAFramework.produceAnalysisEngine(
> UIMAFramework.java:387)
> at
> org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(
> AggregateAnalysisEngine_impl.java:431)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initialize(AggregateAnalysisEngine_impl.java:185)
> at
> org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(
> AnalysisEngineFactory.java:711)
> at
> org.apache.uima.fit.factory.AggregateBuilder.createAggregate(
> AggregateBuilder.java:207)
> at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
> at
> org.eclipse.jetty.servlet.ServletHolder.initServlet(
> ServletHolder.java:532)
> at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.servlet.ServletHandler.initialize(
> ServletHandler.java:791)
> at
> org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> ServletContextHandler.java:265)
> at
> org.eclipse.jetty.webapp.WebAppContext.startContext(
> WebAppContext.java:1242)
> at
> org.eclipse.jetty.server.handler.ContextHandler.
> doStart(ContextHandler.java:717)
> at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.server.handler.HandlerWrapper.
> doStart(HandlerWrapper.java:95)
> at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(
> JettyEmbeddedAdapter.java:67)
> at
> net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> launch(AbstractJettyLauncherMain.java:84)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> main(JettyEmbeddedLauncherMain.java:42)
> Caused by:
> java.lang.reflect.InvocationTargetException
> at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
> at sun.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source)
> at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown
> Source)
> at java.lang.reflect.Constructor.newInstance(Unknown Source)
> at
> org.apache.ctakes.dictionary.lookup2.dictionary.
> DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser.
> java:196)
> at
> org.apache.ctakes.dictionary.lookup2.dictionary.
> DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser.
> java:156)
> at
> org.apache.ctakes.dictionary.lookup2.dictionary.
> DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.
> java:128)
> at
> org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.
> initialize(AbstractJCasTermAnnotator.java:129)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initialize(PrimitiveAnalysisEngine_impl.java:156)
> at
> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(
> AnalysisEngineFactory_impl.java:94)
> at
> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(
> CompositeResourceFactory_impl.java:62)
> at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
> at
> org.apache.uima.UIMAFramework.produceAnalysisEngine(
> UIMAFramework.java:387)
> at
> org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(
> AggregateAnalysisEngine_impl.java:431)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initialize(AggregateAnalysisEngine_impl.java:185)
> at
> org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(
> AnalysisEngineFactory.java:711)
> at
> org.apache.uima.fit.factory.AggregateBuilder.createAggregate(
> AggregateBuilder.java:207)
> at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
> at
> org.eclipse.jetty.servlet.ServletHolder.initServlet(
> ServletHolder.java:532)
> at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.servlet.ServletHandler.initialize(
> ServletHandler.java:791)
> at
> org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> ServletContextHandler.java:265)
> at
> org.eclipse.jetty.webapp.WebAppContext.startContext(
> WebAppContext.java:1242)
> at
> org.eclipse.jetty.server.handler.ContextHandler.
> doStart(ContextHandler.java:717)
> at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.server.handler.HandlerWrapper.
> doStart(HandlerWrapper.java:95)
> at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(
> JettyEmbeddedAdapter.java:67)
> at
> net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> launch(AbstractJettyLauncherMain.java:84)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> main(JettyEmbeddedLauncherMain.java:42)
> Caused by:
> java.sql.SQLException: Invalid User for UMLS dictionary sno_rx_16abTerms
> at
> org.apache.ctakes.dictionary.lookup2.dictionary.
> UmlsJdbcRareWordDictionary.<init>(UmlsJdbcRareWordDictionary.java:29)
> at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
> at sun.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source)
> at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown
> Source)
> at java.lang.reflect.Constructor.newInstance(Unknown Source)
> at
> org.apache.ctakes.dictionary.lookup2.dictionary.
> DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser.
> java:196)
> at
> org.apache.ctakes.dictionary.lookup2.dictionary.
> DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser.
> java:156)
> at
> org.apache.ctakes.dictionary.lookup2.dictionary.
> DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.
> java:128)
> at
> org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.
> initialize(AbstractJCasTermAnnotator.java:129)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initialize(PrimitiveAnalysisEngine_impl.java:156)
> at
> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(
> AnalysisEngineFactory_impl.java:94)
> at
> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(
> CompositeResourceFactory_impl.java:62)
> at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
> at
> org.apache.uima.UIMAFramework.produceAnalysisEngine(
> UIMAFramework.java:387)
> at
> org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(
> AggregateAnalysisEngine_impl.java:431)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initialize(AggregateAnalysisEngine_impl.java:185)
> at
> org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(
> AnalysisEngineFactory.java:711)
> at
> org.apache.uima.fit.factory.AggregateBuilder.createAggregate(
> AggregateBuilder.java:207)
> at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
> at
> org.eclipse.jetty.servlet.ServletHolder.initServlet(
> ServletHolder.java:532)
> at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.servlet.ServletHandler.initialize(
> ServletHandler.java:791)
> at
> org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> ServletContextHandler.java:265)
> at
> org.eclipse.jetty.webapp.WebAppContext.startContext(
> WebAppContext.java:1242)
> at
> org.eclipse.jetty.server.handler.ContextHandler.
> doStart(ContextHandler.java:717)
> at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.server.handler.HandlerWrapper.
> doStart(HandlerWrapper.java:95)
> at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(
> JettyEmbeddedAdapter.java:67)
> at
> net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> launch(AbstractJettyLauncherMain.java:84)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> main(JettyEmbeddedLauncherMain.java:42)
> 2017-11-30 14:07:18.877:WARN:oejs.Holder:
> java.lang.ClassNotFoundException:
> com.sun.jersey.spi.container.servlet.ServletContainer
> at java.net.URLClassLoader.findClass(Unknown Source)
> at java.lang.ClassLoader.loadClass(Unknown Source)
> at sun.misc.Launcher$AppClassLoader.loadClass(Unknown Source)
> at java.lang.ClassLoader.loadClass(Unknown Source)
> at
> org.eclipse.jetty.webapp.WebAppClassLoader.loadClass(
> WebAppClassLoader.java:430)
> at
> org.eclipse.jetty.webapp.WebAppClassLoader.loadClass(
> WebAppClassLoader.java:383)
> at org.eclipse.jetty.util.Loader.loadClass(Loader.java:100)
> at org.eclipse.jetty.util.Loader.loadClass(Loader.java:79)
> at org.eclipse.jetty.servlet.Holder.doStart(Holder.java:107)
> at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:298)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.servlet.ServletHandler.initialize(
> ServletHandler.java:791)
> at
> org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> ServletContextHandler.java:265)
> at
> org.eclipse.jetty.webapp.WebAppContext.startContext(
> WebAppContext.java:1242)
> at
> org.eclipse.jetty.server.handler.ContextHandler.
> doStart(ContextHandler.java:717)
> at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.server.handler.HandlerWrapper.
> doStart(HandlerWrapper.java:95)
> at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(
> JettyEmbeddedAdapter.java:67)
> at
> net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> launch(AbstractJettyLauncherMain.java:84)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> main(JettyEmbeddedLauncherMain.java:42)
> 2017-11-30 14:07:18.878:WARN:/:unavailable
>
>
> regards,
> shyam k.
>
>
> On Thu, Nov 30, 2017 at 1:46 PM, Gandhi Rajan Natarajan <
> Gandhi.Natarajan@arisglobal.com> wrote:
>
> > Hey Sunder,
> >
> > Do you have the required files in your webapp resources folder?
> >
> > The below error shows the required files are missing:
> >
> > Caused by:
> > java.io.FileNotFoundException:
> > \org\apache\ctakes\temporal\ae\eventevent\20150630\model.jar (The system
> > cannot find the path specified) at java.io.FileInputStream.open0(Native
> > Method) at java.io.FileInputStream.open(Unknown Source) at
> > java.io.FileInputStream.<init>(Unknown Source) at
> > java.io.FileInputStream.<init>(Unknown Source)
> >
> > Check out this link - https://urldefense.proofpoint.com/v2/url?u=https-3A__urldefense.proofpoint&d=DwIBaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=tvq0gbpt8EJGu1ezURwhvqjEDn1IyyBNTNBw96aq5pk&s=790FQvkjboCynXxn6G8zrYYgPihBN4KveyyI4nPnRk8&e=.
> com/v2/url?u=https-3A__github.com_healthnlp_&d=DwIBaQ&c=
> qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=
> fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=
> GMS7z6wXokcMqQHAUda8o3XxG1M868mv_PRYbKeB0Zc&s=
> FAcELWVkuvkQZ4udX6onvJRMJRvYTicJFd3MX0mO0YI&e=
> > examples/tree/master/ctakes-temporal-demo/src/main/resources
> >
> > Regards,
> > Gandhi
> >
> >
> > -----Original Message-----
> > From: Ks Sunder [mailto:shyam769@gmail.com]
> > Sent: Thursday, November 30, 2017 12:38 PM
> > To: dev@ctakes.apache.org
> > Subject: Re: Regarding cTakes version upadtion
> >
> > Thank you James,
> >
> > just i am using Maven dependencies and i created one pipline class in
> > that one AggregateBuilder for fastlookup,
> >
> > next i created one servlet for accessing AggregateBuilder.
> >
> > i did every thing .. But i am getting this Exception..
> >
> > ////////////////////////////////////////////////////////////
> //////////////
> >
> > log4j: Level value for root is [INFO].
> > log4j: root level set to INFO
> > log4j: Class name: [org.apache.log4j.ConsoleAppender]
> > log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
> > log4j: Setting property [conversionPattern] to [%d{dd MMM yyyy HH:mm:ss}
> > %5p %c{1} - %m%n].
> > log4j: Adding appender named [consoleAppender] to category [root].
> > 30 Nov 2017 12:27:02 INFO LvgAnnotator - URL for lvg.properties
> > =file:/C:/Users/NI3102/.m2/repository/net/sourceforge/
> > ctakesresources/ctakes-resources-lvg2008/4.0.0/
> > ctakes-resources-lvg2008-4.0.0.jar!/org/apache/ctakes/lvg/
> > data/config/lvg.properties
> > 2017-11-30 12:27:11.055:WARN:/:unavailable
> > org.apache.uima.resource.ResourceInitializationException: Initialization
> > of annotator class "org.apache.ctakes.temporal.ae.
> > EventEventRelationAnnotator"
> > failed. (Descriptor: <unknown>)
> > at
> > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> > initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:252)
> > at
> > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> > initialize(PrimitiveAnalysisEngine_impl.java:156)
> > at
> > org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(
> > AnalysisEngineFactory_impl.java:94)
> > at
> > org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(
> > CompositeResourceFactory_impl.java:62)
> > at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
> > at
> > org.apache.uima.UIMAFramework.produceAnalysisEngine(
> > UIMAFramework.java:387)
> > at
> > org.apache.uima.analysis_engine.asb.impl.ASB_impl.
> setup(ASB_impl.java:254)
> > at
> > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initASB(
> > AggregateAnalysisEngine_impl.java:431)
> > at
> > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> > initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
> > at
> > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> > initialize(AggregateAnalysisEngine_impl.java:185)
> > at
> > org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(
> > AnalysisEngineFactory.java:711)
> > at
> > org.apache.uima.fit.factory.AggregateBuilder.createAggregate(
> > AggregateBuilder.java:207)
> > at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
> > at
> > org.eclipse.jetty.servlet.ServletHolder.initServlet(
> > ServletHolder.java:532)
> > at org.eclipse.jetty.servlet.ServletHolder.doStart(
> ServletHolder.java:344)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > org.eclipse.jetty.servlet.ServletHandler.initialize(
> > ServletHandler.java:791)
> > at
> > org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> > ServletContextHandler.java:265)
> > at
> > org.eclipse.jetty.webapp.WebAppContext.startContext(
> > WebAppContext.java:1242)
> > at
> > org.eclipse.jetty.server.handler.ContextHandler.
> > doStart(ContextHandler.java:717)
> > at org.eclipse.jetty.webapp.WebAppContext.doStart(
> WebAppContext.java:494)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > org.eclipse.jetty.server.handler.HandlerWrapper.
> > doStart(HandlerWrapper.java:95)
> > at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > net.sourceforge.eclipsejetty.starter.embedded.
> JettyEmbeddedAdapter.start(
> > JettyEmbeddedAdapter.java:67)
> > at
> > net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> > launch(AbstractJettyLauncherMain.java:84)
> > at
> > net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> > main(JettyEmbeddedLauncherMain.java:42)
> > Caused by:
> > org.apache.uima.resource.ResourceInitializationException
> > at org.cleartk.ml.CleartkAnnotator.initialize(CleartkAnnotator.java:137)
> > at
> > org.apache.ctakes.temporal.ae.TemporalRelationExtractorAnnot
> > ator.initialize(TemporalRelationExtractorAnnotator.java:164)
> > at
> > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> > initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
> > at
> > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> > initialize(PrimitiveAnalysisEngine_impl.java:156)
> > at
> > org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(
> > AnalysisEngineFactory_impl.java:94)
> > at
> > org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(
> > CompositeResourceFactory_impl.java:62)
> > at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
> > at
> > org.apache.uima.UIMAFramework.produceAnalysisEngine(
> > UIMAFramework.java:387)
> > at
> > org.apache.uima.analysis_engine.asb.impl.ASB_impl.
> setup(ASB_impl.java:254)
> > at
> > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initASB(
> > AggregateAnalysisEngine_impl.java:431)
> > at
> > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> > initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
> > at
> > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> > initialize(AggregateAnalysisEngine_impl.java:185)
> > at
> > org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(
> > AnalysisEngineFactory.java:711)
> > at
> > org.apache.uima.fit.factory.AggregateBuilder.createAggregate(
> > AggregateBuilder.java:207)
> > at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
> > at
> > org.eclipse.jetty.servlet.ServletHolder.initServlet(
> > ServletHolder.java:532)
> > at org.eclipse.jetty.servlet.ServletHolder.doStart(
> ServletHolder.java:344)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > org.eclipse.jetty.servlet.ServletHandler.initialize(
> > ServletHandler.java:791)
> > at
> > org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> > ServletContextHandler.java:265)
> > at
> > org.eclipse.jetty.webapp.WebAppContext.startContext(
> > WebAppContext.java:1242)
> > at
> > org.eclipse.jetty.server.handler.ContextHandler.
> > doStart(ContextHandler.java:717)
> > at org.eclipse.jetty.webapp.WebAppContext.doStart(
> WebAppContext.java:494)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > org.eclipse.jetty.server.handler.HandlerWrapper.
> > doStart(HandlerWrapper.java:95)
> > at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > net.sourceforge.eclipsejetty.starter.embedded.
> JettyEmbeddedAdapter.start(
> > JettyEmbeddedAdapter.java:67)
> > at
> > net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> > launch(AbstractJettyLauncherMain.java:84)
> > at
> > net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> > main(JettyEmbeddedLauncherMain.java:42)
> > Caused by:
> > java.io.FileNotFoundException:
> > \org\apache\ctakes\temporal\ae\eventevent\20150630\model.jar (The system
> > cannot find the path specified) at java.io.FileInputStream.open0(Native
> > Method) at java.io.FileInputStream.open(Unknown Source) at
> > java.io.FileInputStream.<init>(Unknown Source) at
> > java.io.FileInputStream.<init>(Unknown Source) at
> > org.cleartk.ml.jar.GenericJarClassifierFactory.createClassifier(
> > GenericJarClassifierFactory.java:69)
> > at
> > org.cleartk.ml.jar.JarClassifierFactory.createClassifier(
> > JarClassifierFactory.java:35)
> > at org.cleartk.ml.CleartkAnnotator.initialize(CleartkAnnotator.java:135)
> > at
> > org.apache.ctakes.temporal.ae.TemporalRelationExtractorAnnot
> > ator.initialize(TemporalRelationExtractorAnnotator.java:164)
> > at
> > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> > initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
> > at
> > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> > initialize(PrimitiveAnalysisEngine_impl.java:156)
> > at
> > org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(
> > AnalysisEngineFactory_impl.java:94)
> > at
> > org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(
> > CompositeResourceFactory_impl.java:62)
> > at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
> > at
> > org.apache.uima.UIMAFramework.produceAnalysisEngine(
> > UIMAFramework.java:387)
> > at
> > org.apache.uima.analysis_engine.asb.impl.ASB_impl.
> setup(ASB_impl.java:254)
> > at
> > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initASB(
> > AggregateAnalysisEngine_impl.java:431)
> > at
> > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> > initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
> > at
> > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> > initialize(AggregateAnalysisEngine_impl.java:185)
> > at
> > org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(
> > AnalysisEngineFactory.java:711)
> > at
> > org.apache.uima.fit.factory.AggregateBuilder.createAggregate(
> > AggregateBuilder.java:207)
> > at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
> > at
> > org.eclipse.jetty.servlet.ServletHolder.initServlet(
> > ServletHolder.java:532)
> > at org.eclipse.jetty.servlet.ServletHolder.doStart(
> ServletHolder.java:344)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > org.eclipse.jetty.servlet.ServletHandler.initialize(
> > ServletHandler.java:791)
> > at
> > org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> > ServletContextHandler.java:265)
> > at
> > org.eclipse.jetty.webapp.WebAppContext.startContext(
> > WebAppContext.java:1242)
> > at
> > org.eclipse.jetty.server.handler.ContextHandler.
> > doStart(ContextHandler.java:717)
> > at org.eclipse.jetty.webapp.WebAppContext.doStart(
> WebAppContext.java:494)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > org.eclipse.jetty.server.handler.HandlerWrapper.
> > doStart(HandlerWrapper.java:95)
> > at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > net.sourceforge.eclipsejetty.starter.embedded.
> JettyEmbeddedAdapter.start(
> > JettyEmbeddedAdapter.java:67)
> > at
> > net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> > launch(AbstractJettyLauncherMain.java:84)
> > at
> > net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> > main(JettyEmbeddedLauncherMain.java:42)
> > 2017-11-30 12:27:11.058:WARN:oejuc.AbstractLifeCycle:FAILED
> > cTakesWebClass:
> > javax.servlet.ServletException:
> > org.apache.uima.resource.ResourceInitializationException: Initialization
> > of annotator class "org.apache.ctakes.temporal.ae.
> > EventEventRelationAnnotator"
> > failed. (Descriptor: <unknown>)
> > javax.servlet.ServletException:
> > org.apache.uima.resource.ResourceInitializationException: Initialization
> > of annotator class "org.apache.ctakes.temporal.ae.
> > EventEventRelationAnnotator"
> > failed. (Descriptor: <unknown>)
> > at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:38)
> > at
> > org.eclipse.jetty.servlet.ServletHolder.initServlet(
> > ServletHolder.java:532)
> > at org.eclipse.jetty.servlet.ServletHolder.doStart(
> ServletHolder.java:344)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > org.eclipse.jetty.servlet.ServletHandler.initialize(
> > ServletHandler.java:791)
> > at
> > org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> > ServletContextHandler.java:265)
> > at
> > org.eclipse.jetty.webapp.WebAppContext.startContext(
> > WebAppContext.java:1242)
> > at
> > org.eclipse.jetty.server.handler.ContextHandler.
> > doStart(ContextHandler.java:717)
> > at org.eclipse.jetty.webapp.WebAppContext.doStart(
> WebAppContext.java:494)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > org.eclipse.jetty.server.handler.HandlerWrapper.
> > doStart(HandlerWrapper.java:95)
> > at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > net.sourceforge.eclipsejetty.starter.embedded.
> JettyEmbeddedAdapter.start(
> > JettyEmbeddedAdapter.java:67)
> > at
> > net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> > launch(AbstractJettyLauncherMain.java:84)
> > at
> > net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> > main(JettyEmbeddedLauncherMain.java:42)
> > Caused by:
> > org.apache.uima.resource.ResourceInitializationException: Initialization
> > of annotator class "org.apache.ctakes.temporal.ae.
> > EventEventRelationAnnotator"
> > failed. (Descriptor: <unknown>)
> > at
> > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> > initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:252)
> > at
> > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> > initialize(PrimitiveAnalysisEngine_impl.java:156)
> > at
> > org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(
> > AnalysisEngineFactory_impl.java:94)
> > at
> > org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(
> > CompositeResourceFactory_impl.java:62)
> > at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
> > at
> > org.apache.uima.UIMAFramework.produceAnalysisEngine(
> > UIMAFramework.java:387)
> > at
> > org.apache.uima.analysis_engine.asb.impl.ASB_impl.
> setup(ASB_impl.java:254)
> > at
> > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initASB(
> > AggregateAnalysisEngine_impl.java:431)
> > at
> > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> > initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
> > at
> > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> > initialize(AggregateAnalysisEngine_impl.java:185)
> > at
> > org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(
> > AnalysisEngineFactory.java:711)
> > at
> > org.apache.uima.fit.factory.AggregateBuilder.createAggregate(
> > AggregateBuilder.java:207)
> > at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
> > at
> > org.eclipse.jetty.servlet.ServletHolder.initServlet(
> > ServletHolder.java:532)
> > at org.eclipse.jetty.servlet.ServletHolder.doStart(
> ServletHolder.java:344)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > org.eclipse.jetty.servlet.ServletHandler.initialize(
> > ServletHandler.java:791)
> > at
> > org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> > ServletContextHandler.java:265)
> > at
> > org.eclipse.jetty.webapp.WebAppContext.startContext(
> > WebAppContext.java:1242)
> > at
> > org.eclipse.jetty.server.handler.ContextHandler.
> > doStart(ContextHandler.java:717)
> > at org.eclipse.jetty.webapp.WebAppContext.doStart(
> WebAppContext.java:494)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > org.eclipse.jetty.server.handler.HandlerWrapper.
> > doStart(HandlerWrapper.java:95)
> > at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > net.sourceforge.eclipsejetty.starter.embedded.
> JettyEmbeddedAdapter.start(
> > JettyEmbeddedAdapter.java:67)
> > at
> > net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> > launch(AbstractJettyLauncherMain.java:84)
> > at
> > net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> > main(JettyEmbeddedLauncherMain.java:42)
> > Caused by:
> > org.apache.uima.resource.ResourceInitializationException
> > at org.cleartk.ml.CleartkAnnotator.initialize(CleartkAnnotator.java:137)
> > at
> > org.apache.ctakes.temporal.ae.TemporalRelationExtractorAnnot
> > ator.initialize(TemporalRelationExtractorAnnotator.java:164)
> > at
> > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> > initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
> > at
> > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> > initialize(PrimitiveAnalysisEngine_impl.java:156)
> > at
> > org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(
> > AnalysisEngineFactory_impl.java:94)
> > at
> > org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(
> > CompositeResourceFactory_impl.java:62)
> > at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
> > at
> > org.apache.uima.UIMAFramework.produceAnalysisEngine(
> > UIMAFramework.java:387)
> > at
> > org.apache.uima.analysis_engine.asb.impl.ASB_impl.
> setup(ASB_impl.java:254)
> > at
> > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initASB(
> > AggregateAnalysisEngine_impl.java:431)
> > at
> > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> > initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
> > at
> > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> > initialize(AggregateAnalysisEngine_impl.java:185)
> > at
> > org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(
> > AnalysisEngineFactory.java:711)
> > at
> > org.apache.uima.fit.factory.AggregateBuilder.createAggregate(
> > AggregateBuilder.java:207)
> > at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
> > at
> > org.eclipse.jetty.servlet.ServletHolder.initServlet(
> > ServletHolder.java:532)
> > at org.eclipse.jetty.servlet.ServletHolder.doStart(
> ServletHolder.java:344)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > org.eclipse.jetty.servlet.ServletHandler.initialize(
> > ServletHandler.java:791)
> > at
> > org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> > ServletContextHandler.java:265)
> > at
> > org.eclipse.jetty.webapp.WebAppContext.startContext(
> > WebAppContext.java:1242)
> > at
> > org.eclipse.jetty.server.handler.ContextHandler.
> > doStart(ContextHandler.java:717)
> > at org.eclipse.jetty.webapp.WebAppContext.doStart(
> WebAppContext.java:494)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > org.eclipse.jetty.server.handler.HandlerWrapper.
> > doStart(HandlerWrapper.java:95)
> > at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > net.sourceforge.eclipsejetty.starter.embedded.
> JettyEmbeddedAdapter.start(
> > JettyEmbeddedAdapter.java:67)
> > at
> > net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> > launch(AbstractJettyLauncherMain.java:84)
> > at
> > net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> > main(JettyEmbeddedLauncherMain.java:42)
> > Caused by:
> > java.io.FileNotFoundException:
> > \org\apache\ctakes\temporal\ae\eventevent\20150630\model.jar (The system
> > cannot find the path specified) at java.io.FileInputStream.open0(Native
> > Method) at java.io.FileInputStream.open(Unknown Source) at
> > java.io.FileInputStream.<init>(Unknown Source) at
> > java.io.FileInputStream.<init>(Unknown Source) at
> > org.cleartk.ml.jar.GenericJarClassifierFactory.createClassifier(
> > GenericJarClassifierFactory.java:69)
> > at
> > org.cleartk.ml.jar.JarClassifierFactory.createClassifier(
> > JarClassifierFactory.java:35)
> > at org.cleartk.ml.CleartkAnnotator.initialize(CleartkAnnotator.java:135)
> > at
> > org.apache.ctakes.temporal.ae.TemporalRelationExtractorAnnot
> > ator.initialize(TemporalRelationExtractorAnnotator.java:164)
> > at
> > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> > initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
> > at
> > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> > initialize(PrimitiveAnalysisEngine_impl.java:156)
> > at
> > org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(
> > AnalysisEngineFactory_impl.java:94)
> > at
> > org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(
> > CompositeResourceFactory_impl.java:62)
> > at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
> > at
> > org.apache.uima.UIMAFramework.produceAnalysisEngine(
> > UIMAFramework.java:387)
> > at
> > org.apache.uima.analysis_engine.asb.impl.ASB_impl.
> setup(ASB_impl.java:254)
> > at
> > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initASB(
> > AggregateAnalysisEngine_impl.java:431)
> > at
> > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> > initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
> > at
> > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> > initialize(AggregateAnalysisEngine_impl.java:185)
> > at
> > org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(
> > AnalysisEngineFactory.java:711)
> > at
> > org.apache.uima.fit.factory.AggregateBuilder.createAggregate(
> > AggregateBuilder.java:207)
> > at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
> > at
> > org.eclipse.jetty.servlet.ServletHolder.initServlet(
> > ServletHolder.java:532)
> > at org.eclipse.jetty.servlet.ServletHolder.doStart(
> ServletHolder.java:344)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > org.eclipse.jetty.servlet.ServletHandler.initialize(
> > ServletHandler.java:791)
> > at
> > org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> > ServletContextHandler.java:265)
> > at
> > org.eclipse.jetty.webapp.WebAppContext.startContext(
> > WebAppContext.java:1242)
> > at
> > org.eclipse.jetty.server.handler.ContextHandler.
> > doStart(ContextHandler.java:717)
> > at org.eclipse.jetty.webapp.WebAppContext.doStart(
> WebAppContext.java:494)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > org.eclipse.jetty.server.handler.HandlerWrapper.
> > doStart(HandlerWrapper.java:95)
> > at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > net.sourceforge.eclipsejetty.starter.embedded.
> JettyEmbeddedAdapter.start(
> > JettyEmbeddedAdapter.java:67)
> > at
> > net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> > launch(AbstractJettyLauncherMain.java:84)
> > at
> > net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> > main(JettyEmbeddedLauncherMain.java:42)
> > 2017-11-30 12:27:11.066:WARN:oejs.Holder:
> > java.lang.ClassNotFoundException:
> > com.sun.jersey.spi.container.servlet.ServletContainer
> > at java.net.URLClassLoader.findClass(Unknown Source) at
> > java.lang.ClassLoader.loadClass(Unknown Source) at sun.misc.Launcher$
> > AppClassLoader.loadClass(Unknown Source) at java.lang.ClassLoader.
> loadClass(Unknown
> > Source) at
> > org.eclipse.jetty.webapp.WebAppClassLoader.loadClass(
> > WebAppClassLoader.java:430)
> > at
> > org.eclipse.jetty.webapp.WebAppClassLoader.loadClass(
> > WebAppClassLoader.java:383)
> > at org.eclipse.jetty.util.Loader.loadClass(Loader.java:100)
> > at org.eclipse.jetty.util.Loader.loadClass(Loader.java:79)
> > at org.eclipse.jetty.servlet.Holder.doStart(Holder.java:107)
> > at org.eclipse.jetty.servlet.ServletHolder.doStart(
> ServletHolder.java:298)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > org.eclipse.jetty.servlet.ServletHandler.initialize(
> > ServletHandler.java:791)
> > at
> > org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> > ServletContextHandler.java:265)
> > at
> > org.eclipse.jetty.webapp.WebAppContext.startContext(
> > WebAppContext.java:1242)
> > at
> > org.eclipse.jetty.server.handler.ContextHandler.
> > doStart(ContextHandler.java:717)
> > at org.eclipse.jetty.webapp.WebAppContext.doStart(
> WebAppContext.java:494)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > org.eclipse.jetty.server.handler.HandlerWrapper.
> > doStart(HandlerWrapper.java:95)
> > at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > net.sourceforge.eclipsejetty.starter.embedded.
> JettyEmbeddedAdapter.start(
> > JettyEmbeddedAdapter.java:67)
> > at
> > net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> > launch(AbstractJettyLauncherMain.java:84)
> > at
> > net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> > main(JettyEmbeddedLauncherMain.java:42)
> > 2017-11-30 12:27:11.066:WARN:/:unavailable
> > javax.servlet.UnavailableException:
> > com.sun.jersey.spi.container.servlet.ServletContainer
> > at org.eclipse.jetty.servlet.Holder.doStart(Holder.java:114)
> > at org.eclipse.jetty.servlet.ServletHolder.doStart(
> ServletHolder.java:298)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > org.eclipse.jetty.servlet.ServletHandler.initialize(
> > ServletHandler.java:791)
> > at
> > org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> > ServletContextHandler.java:265)
> > at
> > org.eclipse.jetty.webapp.WebAppContext.startContext(
> > WebAppContext.java:1242)
> > at
> > org.eclipse.jetty.server.handler.ContextHandler.
> > doStart(ContextHandler.java:717)
> > at org.eclipse.jetty.webapp.WebAppContext.doStart(
> WebAppContext.java:494)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > org.eclipse.jetty.server.handler.HandlerWrapper.
> > doStart(HandlerWrapper.java:95)
> > at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > net.sourceforge.eclipsejetty.starter.embedded.
> JettyEmbeddedAdapter.start(
> > JettyEmbeddedAdapter.java:67)
> > at
> > net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> > launch(AbstractJettyLauncherMain.java:84)
> > at
> > net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> > main(JettyEmbeddedLauncherMain.java:42)
> > 2017-11-30 12:27:11.066:WARN:oejuc.AbstractLifeCycle:FAILED Jersey
> RESTful
> > Application: javax.servlet.UnavailableException:
> > com.sun.jersey.spi.container.servlet.ServletContainer
> > javax.servlet.UnavailableException:
> > com.sun.jersey.spi.container.servlet.ServletContainer
> > at org.eclipse.jetty.servlet.Holder.doStart(Holder.java:114)
> > at org.eclipse.jetty.servlet.ServletHolder.doStart(
> ServletHolder.java:298)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > org.eclipse.jetty.servlet.ServletHandler.initialize(
> > ServletHandler.java:791)
> > at
> > org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> > ServletContextHandler.java:265)
> > at
> > org.eclipse.jetty.webapp.WebAppContext.startContext(
> > WebAppContext.java:1242)
> > at
> > org.eclipse.jetty.server.handler.ContextHandler.
> > doStart(ContextHandler.java:717)
> > at org.eclipse.jetty.webapp.WebAppContext.doStart(
> WebAppContext.java:494)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > org.eclipse.jetty.server.handler.HandlerWrapper.
> > doStart(HandlerWrapper.java:95)
> > at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > net.sourceforge.eclipsejetty.starter.embedded.
> JettyEmbeddedAdapter.start(
> > JettyEmbeddedAdapter.java:67)
> > at
> > net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> > launch(AbstractJettyLauncherMain.java:84)
> > at
> > net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> > main(JettyEmbeddedLauncherMain.java:42)
> > 2017-11-30 12:27:11.067:WARN:oejw.WebAppContext:Failed startup of
> context
> > o.e.j.w.WebAppContext{/,file:/E:/cTakesLive/cTakes4.0/
> > WebContent/},E:\cTakesLive\cTakes4.0\WebContent
> > MultiException[javax.servlet.ServletException:
> > org.apache.uima.resource.ResourceInitializationException: Initialization
> > of annotator class "org.apache.ctakes.temporal.ae.
> > EventEventRelationAnnotator"
> > failed. (Descriptor: <unknown>), javax.servlet.UnavailableException:
> > com.sun.jersey.spi.container.servlet.ServletContainer]
> > at
> > org.eclipse.jetty.servlet.ServletHandler.initialize(
> > ServletHandler.java:762)
> > at
> > org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> > ServletContextHandler.java:265)
> > at
> > org.eclipse.jetty.webapp.WebAppContext.startContext(
> > WebAppContext.java:1242)
> > at
> > org.eclipse.jetty.server.handler.ContextHandler.
> > doStart(ContextHandler.java:717)
> > at org.eclipse.jetty.webapp.WebAppContext.doStart(
> WebAppContext.java:494)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > org.eclipse.jetty.server.handler.HandlerWrapper.
> > doStart(HandlerWrapper.java:95)
> > at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > net.sourceforge.eclipsejetty.starter.embedded.
> JettyEmbeddedAdapter.start(
> > JettyEmbeddedAdapter.java:67)
> > at
> > net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> > launch(AbstractJettyLauncherMain.java:84)
> > at
> > net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> > main(JettyEmbeddedLauncherMain.java:42)
> > 2017-11-30 12:27:11.150:INFO:oejs.AbstractConnector:Started
> > SelectChannelConnector@0.0.0.0:8080
> >
> >
> > /////////////////////////////////////////////////////////////////
> >
> > How can I solve this please help me.
> >
> > regards,
> > shyam k.
> >
> > On Thu, Nov 30, 2017 at 1:59 AM, James Masanz <ma...@gmail.com>
> > wrote:
> >
> > > First, take a look at changes that might affect you, listed on the
> > > Wiki
> > > here:
> > >
> > > https://urldefense.proofpoint.com/v2/url?u=https-3A__cwiki.
> apache.org_confluence_display_CTAKES_New-2B&d=DwIBaQ&c=qS4goWBT7poplM69zy_
> 3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=
> GMS7z6wXokcMqQHAUda8o3XxG1M868mv_PRYbKeB0Zc&s=
> uosucKTceY1WhBHP6_cDURFltyO-A-O8mm603JhoYQs&e=
> > > for+4.0#Newfor4.0-Changes
> > >
> > > I think in order to answer well, I'd need an explanation of how you
> > > are using cTAKES now - just as maven dependencies? Or do you install
> > > from a .tar.gz (or .zip)? Or do you check out the code from SVN?
> > > Have you made modifications to cTAKES itself?
> > >
> > >
> > >
> > > On Wed, Nov 29, 2017 at 10:26 AM, Ks Sunder <sh...@gmail.com>
> wrote:
> > >
> > > > Hi,
> > > >
> > > >
> > > > What are the steps need to change ctakes 3.x version to ctakes 4
> > > > version
> > > ,
> > > > and can I change maven dependency..?
> > > >
> > > > Please help me.
> > > >
> > > > Regards,
> > > > Shyam k.
> > > >
> > >
> > This email and any files transmitted with it are confidential and
> intended
> > solely for the use of the individual or entity to whom they are
> addressed.
> > If you are not the named addressee you should not disseminate, distribute
> > or copy this e-mail. Please notify the sender or system manager by email
> > immediately if you have received this e-mail by mistake and delete this
> > e-mail from your system. If you are not the intended recipient you are
> > notified that disclosing, copying, distributing or taking any action in
> > reliance on the contents of this information is strictly prohibited and
> > against the law.
> >
>
RE: Regarding cTakes version upadtion [EXTERNAL]
Posted by Gandhi Rajan Natarajan <Ga...@arisglobal.com>.
You can explode the war file to a folder and edit the xml file under <application_name>WEB-INF\classes\org\apache\ctakes\dictionary\lookup\fast with proper UMLS username and password.
Then you can deploy the exploded folder in Tomcat.
Regards,
Gandhi
-----Original Message-----
From: Ks Sunder [mailto:shyam769@gmail.com]
Sent: Friday, December 01, 2017 7:01 PM
To: dev@ctakes.apache.org
Subject: Re: Regarding cTakes version upadtion [EXTERNAL]
Hi,
when i am using cTakes3.2.2 after maven install , cTakes all modules
available at src folder in that i changed username and pwd.
but cTakes4.0 is jsut created war file of cTakes modules .. i am confused
how can change username and pwd in cTakes4.0..?
can we have any properties files for that...?
please help me..
On Thu, Nov 30, 2017 at 7:42 PM, Finan, Sean <
Sean.Finan@childrens.harvard.edu> wrote:
> Hi Shyam k,
>
> Are you sure that you changed your umls credentials? How did you change
> them? It doesn't look like your change went through since your error is
> still:
> > is not valid for user CHANGE_ME with CHANGE_ME
>
> Sean
>
> -----Original Message-----
> From: Ks Sunder [mailto:shyam769@gmail.com]
> Sent: Thursday, November 30, 2017 3:41 AM
> To: dev@ctakes.apache.org
> Subject: Re: Regarding cTakes version upadtion [EXTERNAL]
>
> Hi,
>
> I commented in Pipeline :
> \org\apache\ctakes\temporal\ae\eventevent\20150630\model.jar
>
> stitll i am getting this error : UMLS Account at
> https://urldefense.proofpoint.com/v2/url?u=https-3A__uts-
> 2Dws.nlm.nih.gov_restful_isValidUMLSUser&d=DwIBaQ&c=qS4goWBT7poplM69zy_
> 3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=
> GMS7z6wXokcMqQHAUda8o3XxG1M868mv_PRYbKeB0Zc&s=
> le1pEnmgizyhdYQnzNGbDFgXFy53cl2Jj51E-IjkQck&e= is not valid for user
> CHANGE_ME with CHANGE_ME ,
> I changed UMLusername and password its notworking, but cTakes 3.x is
> working properly through current Uml credentials,
> we need any other credential for cTakes4.0...?
>
> Error////////////////////////////////////////////////////////
>
>
> 30 Nov 2017 14:07:16 INFO DictionaryDescriptorParser - Parsing dictionary
> specifications:
> 30 Nov 2017 14:07:16 INFO UmlsUserApprover - Checking UMLS Account at
> https://urldefense.proofpoint.com/v2/url?u=https-3A__uts-
> 2Dws.nlm.nih.gov_restful_isValidUMLSUser&d=DwIBaQ&c=qS4goWBT7poplM69zy_
> 3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=
> GMS7z6wXokcMqQHAUda8o3XxG1M868mv_PRYbKeB0Zc&s=
> le1pEnmgizyhdYQnzNGbDFgXFy53cl2Jj51E-IjkQck&e= for user CHANGE_ME:
> ........30 Nov 2017 14:07:18 ERROR UmlsUserApprover - UMLS Account at
> https://urldefense.proofpoint.com/v2/url?u=https-3A__uts-
> 2Dws.nlm.nih.gov_restful_isValidUMLSUser&d=DwIBaQ&c=qS4goWBT7poplM69zy_
> 3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=
> GMS7z6wXokcMqQHAUda8o3XxG1M868mv_PRYbKeB0Zc&s=
> le1pEnmgizyhdYQnzNGbDFgXFy53cl2Jj51E-IjkQck&e= is not valid for user
> CHANGE_ME with CHANGE_ME
>
> 2017-11-30 14:07:18.867:WARN:/:unavailable
> org.apache.uima.resource.ResourceInitializationException: Initialization
> of
> annotator class
> "org.apache.ctakes.dictionary.lookup2.ae.DefaultJCasTermAnnotator" failed.
> (Descriptor: <unknown>)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:252)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initialize(PrimitiveAnalysisEngine_impl.java:156)
> at
> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(
> AnalysisEngineFactory_impl.java:94)
> at
> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(
> CompositeResourceFactory_impl.java:62)
> at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
> at
> org.apache.uima.UIMAFramework.produceAnalysisEngine(
> UIMAFramework.java:387)
> at
> org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(
> AggregateAnalysisEngine_impl.java:431)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initialize(AggregateAnalysisEngine_impl.java:185)
> at
> org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(
> AnalysisEngineFactory.java:711)
> at
> org.apache.uima.fit.factory.AggregateBuilder.createAggregate(
> AggregateBuilder.java:207)
> at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
> at
> org.eclipse.jetty.servlet.ServletHolder.initServlet(
> ServletHolder.java:532)
> at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.servlet.ServletHandler.initialize(
> ServletHandler.java:791)
> at
> org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> ServletContextHandler.java:265)
> at
> org.eclipse.jetty.webapp.WebAppContext.startContext(
> WebAppContext.java:1242)
> at
> org.eclipse.jetty.server.handler.ContextHandler.
> doStart(ContextHandler.java:717)
> at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.server.handler.HandlerWrapper.
> doStart(HandlerWrapper.java:95)
> at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(
> JettyEmbeddedAdapter.java:67)
> at
> net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> launch(AbstractJettyLauncherMain.java:84)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> main(JettyEmbeddedLauncherMain.java:42)
> Caused by:
> org.apache.uima.resource.ResourceInitializationException: EXCEPTION
> MESSAGE
> LOCALIZATION FAILED: java.util.MissingResourceException: Can't find
> resource for bundle java.util.PropertyResourceBundle, key Could not
> construct
> org.apache.ctakes.dictionary.lookup2.dictionary.UmlsJdbcRareWordDictionary
> at
> org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.
> initialize(AbstractJCasTermAnnotator.java:131)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initialize(PrimitiveAnalysisEngine_impl.java:156)
> at
> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(
> AnalysisEngineFactory_impl.java:94)
> at
> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(
> CompositeResourceFactory_impl.java:62)
> at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
> at
> org.apache.uima.UIMAFramework.produceAnalysisEngine(
> UIMAFramework.java:387)
> at
> org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(
> AggregateAnalysisEngine_impl.java:431)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initialize(AggregateAnalysisEngine_impl.java:185)
> at
> org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(
> AnalysisEngineFactory.java:711)
> at
> org.apache.uima.fit.factory.AggregateBuilder.createAggregate(
> AggregateBuilder.java:207)
> at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
> at
> org.eclipse.jetty.servlet.ServletHolder.initServlet(
> ServletHolder.java:532)
> at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.servlet.ServletHandler.initialize(
> ServletHandler.java:791)
> at
> org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> ServletContextHandler.java:265)
> at
> org.eclipse.jetty.webapp.WebAppContext.startContext(
> WebAppContext.java:1242)
> at
> org.eclipse.jetty.server.handler.ContextHandler.
> doStart(ContextHandler.java:717)
> at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.server.handler.HandlerWrapper.
> doStart(HandlerWrapper.java:95)
> at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(
> JettyEmbeddedAdapter.java:67)
> at
> net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> launch(AbstractJettyLauncherMain.java:84)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> main(JettyEmbeddedLauncherMain.java:42)
> Caused by:
> org.apache.uima.analysis_engine.annotator.AnnotatorContextException:
> EXCEPTION MESSAGE LOCALIZATION FAILED: java.util.MissingResourceException:
> Can't find resource for bundle java.util.PropertyResourceBundle, key Could
> not construct
> org.apache.ctakes.dictionary.lookup2.dictionary.UmlsJdbcRareWordDictionary
> at
> org.apache.ctakes.dictionary.lookup2.dictionary.
> DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser.
> java:199)
> at
> org.apache.ctakes.dictionary.lookup2.dictionary.
> DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser.
> java:156)
> at
> org.apache.ctakes.dictionary.lookup2.dictionary.
> DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.
> java:128)
> at
> org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.
> initialize(AbstractJCasTermAnnotator.java:129)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initialize(PrimitiveAnalysisEngine_impl.java:156)
> at
> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(
> AnalysisEngineFactory_impl.java:94)
> at
> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(
> CompositeResourceFactory_impl.java:62)
> at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
> at
> org.apache.uima.UIMAFramework.produceAnalysisEngine(
> UIMAFramework.java:387)
> at
> org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(
> AggregateAnalysisEngine_impl.java:431)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initialize(AggregateAnalysisEngine_impl.java:185)
> at
> org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(
> AnalysisEngineFactory.java:711)
> at
> org.apache.uima.fit.factory.AggregateBuilder.createAggregate(
> AggregateBuilder.java:207)
> at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
> at
> org.eclipse.jetty.servlet.ServletHolder.initServlet(
> ServletHolder.java:532)
> at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.servlet.ServletHandler.initialize(
> ServletHandler.java:791)
> at
> org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> ServletContextHandler.java:265)
> at
> org.eclipse.jetty.webapp.WebAppContext.startContext(
> WebAppContext.java:1242)
> at
> org.eclipse.jetty.server.handler.ContextHandler.
> doStart(ContextHandler.java:717)
> at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.server.handler.HandlerWrapper.
> doStart(HandlerWrapper.java:95)
> at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(
> JettyEmbeddedAdapter.java:67)
> at
> net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> launch(AbstractJettyLauncherMain.java:84)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> main(JettyEmbeddedLauncherMain.java:42)
> Caused by:
> java.lang.reflect.InvocationTargetException
> at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
> at sun.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source)
> at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown
> Source)
> at java.lang.reflect.Constructor.newInstance(Unknown Source)
> at
> org.apache.ctakes.dictionary.lookup2.dictionary.
> DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser.
> java:196)
> at
> org.apache.ctakes.dictionary.lookup2.dictionary.
> DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser.
> java:156)
> at
> org.apache.ctakes.dictionary.lookup2.dictionary.
> DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.
> java:128)
> at
> org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.
> initialize(AbstractJCasTermAnnotator.java:129)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initialize(PrimitiveAnalysisEngine_impl.java:156)
> at
> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(
> AnalysisEngineFactory_impl.java:94)
> at
> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(
> CompositeResourceFactory_impl.java:62)
> at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
> at
> org.apache.uima.UIMAFramework.produceAnalysisEngine(
> UIMAFramework.java:387)
> at
> org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(
> AggregateAnalysisEngine_impl.java:431)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initialize(AggregateAnalysisEngine_impl.java:185)
> at
> org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(
> AnalysisEngineFactory.java:711)
> at
> org.apache.uima.fit.factory.AggregateBuilder.createAggregate(
> AggregateBuilder.java:207)
> at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
> at
> org.eclipse.jetty.servlet.ServletHolder.initServlet(
> ServletHolder.java:532)
> at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.servlet.ServletHandler.initialize(
> ServletHandler.java:791)
> at
> org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> ServletContextHandler.java:265)
> at
> org.eclipse.jetty.webapp.WebAppContext.startContext(
> WebAppContext.java:1242)
> at
> org.eclipse.jetty.server.handler.ContextHandler.
> doStart(ContextHandler.java:717)
> at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.server.handler.HandlerWrapper.
> doStart(HandlerWrapper.java:95)
> at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(
> JettyEmbeddedAdapter.java:67)
> at
> net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> launch(AbstractJettyLauncherMain.java:84)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> main(JettyEmbeddedLauncherMain.java:42)
> Caused by:
> java.sql.SQLException: Invalid User for UMLS dictionary sno_rx_16abTerms
> at
> org.apache.ctakes.dictionary.lookup2.dictionary.
> UmlsJdbcRareWordDictionary.<init>(UmlsJdbcRareWordDictionary.java:29)
> at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
> at sun.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source)
> at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown
> Source)
> at java.lang.reflect.Constructor.newInstance(Unknown Source)
> at
> org.apache.ctakes.dictionary.lookup2.dictionary.
> DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser.
> java:196)
> at
> org.apache.ctakes.dictionary.lookup2.dictionary.
> DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser.
> java:156)
> at
> org.apache.ctakes.dictionary.lookup2.dictionary.
> DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.
> java:128)
> at
> org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.
> initialize(AbstractJCasTermAnnotator.java:129)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initialize(PrimitiveAnalysisEngine_impl.java:156)
> at
> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(
> AnalysisEngineFactory_impl.java:94)
> at
> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(
> CompositeResourceFactory_impl.java:62)
> at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
> at
> org.apache.uima.UIMAFramework.produceAnalysisEngine(
> UIMAFramework.java:387)
> at
> org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(
> AggregateAnalysisEngine_impl.java:431)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initialize(AggregateAnalysisEngine_impl.java:185)
> at
> org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(
> AnalysisEngineFactory.java:711)
> at
> org.apache.uima.fit.factory.AggregateBuilder.createAggregate(
> AggregateBuilder.java:207)
> at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
> at
> org.eclipse.jetty.servlet.ServletHolder.initServlet(
> ServletHolder.java:532)
> at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.servlet.ServletHandler.initialize(
> ServletHandler.java:791)
> at
> org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> ServletContextHandler.java:265)
> at
> org.eclipse.jetty.webapp.WebAppContext.startContext(
> WebAppContext.java:1242)
> at
> org.eclipse.jetty.server.handler.ContextHandler.
> doStart(ContextHandler.java:717)
> at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.server.handler.HandlerWrapper.
> doStart(HandlerWrapper.java:95)
> at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(
> JettyEmbeddedAdapter.java:67)
> at
> net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> launch(AbstractJettyLauncherMain.java:84)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> main(JettyEmbeddedLauncherMain.java:42)
> 2017-11-30 14:07:18.872:WARN:oejuc.AbstractLifeCycle:FAILED
> cTakesWebClass:
> javax.servlet.ServletException:
> org.apache.uima.resource.ResourceInitializationException: Initialization
> of
> annotator class
> "org.apache.ctakes.dictionary.lookup2.ae.DefaultJCasTermAnnotator" failed.
> (Descriptor: <unknown>)
> javax.servlet.ServletException:
> org.apache.uima.resource.ResourceInitializationException: Initialization
> of
> annotator class
> "org.apache.ctakes.dictionary.lookup2.ae.DefaultJCasTermAnnotator" failed.
> (Descriptor: <unknown>)
> at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:38)
> at
> org.eclipse.jetty.servlet.ServletHolder.initServlet(
> ServletHolder.java:532)
> at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.servlet.ServletHandler.initialize(
> ServletHandler.java:791)
> at
> org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> ServletContextHandler.java:265)
> at
> org.eclipse.jetty.webapp.WebAppContext.startContext(
> WebAppContext.java:1242)
> at
> org.eclipse.jetty.server.handler.ContextHandler.
> doStart(ContextHandler.java:717)
> at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.server.handler.HandlerWrapper.
> doStart(HandlerWrapper.java:95)
> at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(
> JettyEmbeddedAdapter.java:67)
> at
> net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> launch(AbstractJettyLauncherMain.java:84)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> main(JettyEmbeddedLauncherMain.java:42)
> Caused by:
> org.apache.uima.resource.ResourceInitializationException: Initialization
> of
> annotator class
> "org.apache.ctakes.dictionary.lookup2.ae.DefaultJCasTermAnnotator" failed.
> (Descriptor: <unknown>)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:252)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initialize(PrimitiveAnalysisEngine_impl.java:156)
> at
> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(
> AnalysisEngineFactory_impl.java:94)
> at
> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(
> CompositeResourceFactory_impl.java:62)
> at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
> at
> org.apache.uima.UIMAFramework.produceAnalysisEngine(
> UIMAFramework.java:387)
> at
> org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(
> AggregateAnalysisEngine_impl.java:431)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initialize(AggregateAnalysisEngine_impl.java:185)
> at
> org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(
> AnalysisEngineFactory.java:711)
> at
> org.apache.uima.fit.factory.AggregateBuilder.createAggregate(
> AggregateBuilder.java:207)
> at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
> at
> org.eclipse.jetty.servlet.ServletHolder.initServlet(
> ServletHolder.java:532)
> at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.servlet.ServletHandler.initialize(
> ServletHandler.java:791)
> at
> org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> ServletContextHandler.java:265)
> at
> org.eclipse.jetty.webapp.WebAppContext.startContext(
> WebAppContext.java:1242)
> at
> org.eclipse.jetty.server.handler.ContextHandler.
> doStart(ContextHandler.java:717)
> at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.server.handler.HandlerWrapper.
> doStart(HandlerWrapper.java:95)
> at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(
> JettyEmbeddedAdapter.java:67)
> at
> net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> launch(AbstractJettyLauncherMain.java:84)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> main(JettyEmbeddedLauncherMain.java:42)
> Caused by:
> org.apache.uima.resource.ResourceInitializationException: EXCEPTION
> MESSAGE
> LOCALIZATION FAILED: java.util.MissingResourceException: Can't find
> resource for bundle java.util.PropertyResourceBundle, key Could not
> construct
> org.apache.ctakes.dictionary.lookup2.dictionary.UmlsJdbcRareWordDictionary
> at
> org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.
> initialize(AbstractJCasTermAnnotator.java:131)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initialize(PrimitiveAnalysisEngine_impl.java:156)
> at
> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(
> AnalysisEngineFactory_impl.java:94)
> at
> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(
> CompositeResourceFactory_impl.java:62)
> at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
> at
> org.apache.uima.UIMAFramework.produceAnalysisEngine(
> UIMAFramework.java:387)
> at
> org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(
> AggregateAnalysisEngine_impl.java:431)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initialize(AggregateAnalysisEngine_impl.java:185)
> at
> org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(
> AnalysisEngineFactory.java:711)
> at
> org.apache.uima.fit.factory.AggregateBuilder.createAggregate(
> AggregateBuilder.java:207)
> at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
> at
> org.eclipse.jetty.servlet.ServletHolder.initServlet(
> ServletHolder.java:532)
> at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.servlet.ServletHandler.initialize(
> ServletHandler.java:791)
> at
> org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> ServletContextHandler.java:265)
> at
> org.eclipse.jetty.webapp.WebAppContext.startContext(
> WebAppContext.java:1242)
> at
> org.eclipse.jetty.server.handler.ContextHandler.
> doStart(ContextHandler.java:717)
> at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.server.handler.HandlerWrapper.
> doStart(HandlerWrapper.java:95)
> at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(
> JettyEmbeddedAdapter.java:67)
> at
> net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> launch(AbstractJettyLauncherMain.java:84)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> main(JettyEmbeddedLauncherMain.java:42)
> Caused by:
> org.apache.uima.analysis_engine.annotator.AnnotatorContextException:
> EXCEPTION MESSAGE LOCALIZATION FAILED: java.util.MissingResourceException:
> Can't find resource for bundle java.util.PropertyResourceBundle, key Could
> not construct
> org.apache.ctakes.dictionary.lookup2.dictionary.UmlsJdbcRareWordDictionary
> at
> org.apache.ctakes.dictionary.lookup2.dictionary.
> DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser.
> java:199)
> at
> org.apache.ctakes.dictionary.lookup2.dictionary.
> DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser.
> java:156)
> at
> org.apache.ctakes.dictionary.lookup2.dictionary.
> DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.
> java:128)
> at
> org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.
> initialize(AbstractJCasTermAnnotator.java:129)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initialize(PrimitiveAnalysisEngine_impl.java:156)
> at
> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(
> AnalysisEngineFactory_impl.java:94)
> at
> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(
> CompositeResourceFactory_impl.java:62)
> at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
> at
> org.apache.uima.UIMAFramework.produceAnalysisEngine(
> UIMAFramework.java:387)
> at
> org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(
> AggregateAnalysisEngine_impl.java:431)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initialize(AggregateAnalysisEngine_impl.java:185)
> at
> org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(
> AnalysisEngineFactory.java:711)
> at
> org.apache.uima.fit.factory.AggregateBuilder.createAggregate(
> AggregateBuilder.java:207)
> at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
> at
> org.eclipse.jetty.servlet.ServletHolder.initServlet(
> ServletHolder.java:532)
> at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.servlet.ServletHandler.initialize(
> ServletHandler.java:791)
> at
> org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> ServletContextHandler.java:265)
> at
> org.eclipse.jetty.webapp.WebAppContext.startContext(
> WebAppContext.java:1242)
> at
> org.eclipse.jetty.server.handler.ContextHandler.
> doStart(ContextHandler.java:717)
> at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.server.handler.HandlerWrapper.
> doStart(HandlerWrapper.java:95)
> at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(
> JettyEmbeddedAdapter.java:67)
> at
> net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> launch(AbstractJettyLauncherMain.java:84)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> main(JettyEmbeddedLauncherMain.java:42)
> Caused by:
> java.lang.reflect.InvocationTargetException
> at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
> at sun.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source)
> at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown
> Source)
> at java.lang.reflect.Constructor.newInstance(Unknown Source)
> at
> org.apache.ctakes.dictionary.lookup2.dictionary.
> DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser.
> java:196)
> at
> org.apache.ctakes.dictionary.lookup2.dictionary.
> DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser.
> java:156)
> at
> org.apache.ctakes.dictionary.lookup2.dictionary.
> DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.
> java:128)
> at
> org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.
> initialize(AbstractJCasTermAnnotator.java:129)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initialize(PrimitiveAnalysisEngine_impl.java:156)
> at
> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(
> AnalysisEngineFactory_impl.java:94)
> at
> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(
> CompositeResourceFactory_impl.java:62)
> at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
> at
> org.apache.uima.UIMAFramework.produceAnalysisEngine(
> UIMAFramework.java:387)
> at
> org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(
> AggregateAnalysisEngine_impl.java:431)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initialize(AggregateAnalysisEngine_impl.java:185)
> at
> org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(
> AnalysisEngineFactory.java:711)
> at
> org.apache.uima.fit.factory.AggregateBuilder.createAggregate(
> AggregateBuilder.java:207)
> at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
> at
> org.eclipse.jetty.servlet.ServletHolder.initServlet(
> ServletHolder.java:532)
> at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.servlet.ServletHandler.initialize(
> ServletHandler.java:791)
> at
> org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> ServletContextHandler.java:265)
> at
> org.eclipse.jetty.webapp.WebAppContext.startContext(
> WebAppContext.java:1242)
> at
> org.eclipse.jetty.server.handler.ContextHandler.
> doStart(ContextHandler.java:717)
> at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.server.handler.HandlerWrapper.
> doStart(HandlerWrapper.java:95)
> at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(
> JettyEmbeddedAdapter.java:67)
> at
> net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> launch(AbstractJettyLauncherMain.java:84)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> main(JettyEmbeddedLauncherMain.java:42)
> Caused by:
> java.sql.SQLException: Invalid User for UMLS dictionary sno_rx_16abTerms
> at
> org.apache.ctakes.dictionary.lookup2.dictionary.
> UmlsJdbcRareWordDictionary.<init>(UmlsJdbcRareWordDictionary.java:29)
> at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
> at sun.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source)
> at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown
> Source)
> at java.lang.reflect.Constructor.newInstance(Unknown Source)
> at
> org.apache.ctakes.dictionary.lookup2.dictionary.
> DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser.
> java:196)
> at
> org.apache.ctakes.dictionary.lookup2.dictionary.
> DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser.
> java:156)
> at
> org.apache.ctakes.dictionary.lookup2.dictionary.
> DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.
> java:128)
> at
> org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.
> initialize(AbstractJCasTermAnnotator.java:129)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initialize(PrimitiveAnalysisEngine_impl.java:156)
> at
> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(
> AnalysisEngineFactory_impl.java:94)
> at
> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(
> CompositeResourceFactory_impl.java:62)
> at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
> at
> org.apache.uima.UIMAFramework.produceAnalysisEngine(
> UIMAFramework.java:387)
> at
> org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(
> AggregateAnalysisEngine_impl.java:431)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initialize(AggregateAnalysisEngine_impl.java:185)
> at
> org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(
> AnalysisEngineFactory.java:711)
> at
> org.apache.uima.fit.factory.AggregateBuilder.createAggregate(
> AggregateBuilder.java:207)
> at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
> at
> org.eclipse.jetty.servlet.ServletHolder.initServlet(
> ServletHolder.java:532)
> at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.servlet.ServletHandler.initialize(
> ServletHandler.java:791)
> at
> org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> ServletContextHandler.java:265)
> at
> org.eclipse.jetty.webapp.WebAppContext.startContext(
> WebAppContext.java:1242)
> at
> org.eclipse.jetty.server.handler.ContextHandler.
> doStart(ContextHandler.java:717)
> at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.server.handler.HandlerWrapper.
> doStart(HandlerWrapper.java:95)
> at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(
> JettyEmbeddedAdapter.java:67)
> at
> net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> launch(AbstractJettyLauncherMain.java:84)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> main(JettyEmbeddedLauncherMain.java:42)
> 2017-11-30 14:07:18.877:WARN:oejs.Holder:
> java.lang.ClassNotFoundException:
> com.sun.jersey.spi.container.servlet.ServletContainer
> at java.net.URLClassLoader.findClass(Unknown Source)
> at java.lang.ClassLoader.loadClass(Unknown Source)
> at sun.misc.Launcher$AppClassLoader.loadClass(Unknown Source)
> at java.lang.ClassLoader.loadClass(Unknown Source)
> at
> org.eclipse.jetty.webapp.WebAppClassLoader.loadClass(
> WebAppClassLoader.java:430)
> at
> org.eclipse.jetty.webapp.WebAppClassLoader.loadClass(
> WebAppClassLoader.java:383)
> at org.eclipse.jetty.util.Loader.loadClass(Loader.java:100)
> at org.eclipse.jetty.util.Loader.loadClass(Loader.java:79)
> at org.eclipse.jetty.servlet.Holder.doStart(Holder.java:107)
> at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:298)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.servlet.ServletHandler.initialize(
> ServletHandler.java:791)
> at
> org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> ServletContextHandler.java:265)
> at
> org.eclipse.jetty.webapp.WebAppContext.startContext(
> WebAppContext.java:1242)
> at
> org.eclipse.jetty.server.handler.ContextHandler.
> doStart(ContextHandler.java:717)
> at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.server.handler.HandlerWrapper.
> doStart(HandlerWrapper.java:95)
> at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(
> JettyEmbeddedAdapter.java:67)
> at
> net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> launch(AbstractJettyLauncherMain.java:84)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> main(JettyEmbeddedLauncherMain.java:42)
> 2017-11-30 14:07:18.878:WARN:/:unavailable
>
>
> regards,
> shyam k.
>
>
> On Thu, Nov 30, 2017 at 1:46 PM, Gandhi Rajan Natarajan <
> Gandhi.Natarajan@arisglobal.com> wrote:
>
> > Hey Sunder,
> >
> > Do you have the required files in your webapp resources folder?
> >
> > The below error shows the required files are missing:
> >
> > Caused by:
> > java.io.FileNotFoundException:
> > \org\apache\ctakes\temporal\ae\eventevent\20150630\model.jar (The system
> > cannot find the path specified) at java.io.FileInputStream.open0(Native
> > Method) at java.io.FileInputStream.open(Unknown Source) at
> > java.io.FileInputStream.<init>(Unknown Source) at
> > java.io.FileInputStream.<init>(Unknown Source)
> >
> > Check out this link - https://urldefense.proofpoint.
> com/v2/url?u=https-3A__github.com_healthnlp_&d=DwIBaQ&c=
> qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=
> fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=
> GMS7z6wXokcMqQHAUda8o3XxG1M868mv_PRYbKeB0Zc&s=
> FAcELWVkuvkQZ4udX6onvJRMJRvYTicJFd3MX0mO0YI&e=
> > examples/tree/master/ctakes-temporal-demo/src/main/resources
> >
> > Regards,
> > Gandhi
> >
> >
> > -----Original Message-----
> > From: Ks Sunder [mailto:shyam769@gmail.com]
> > Sent: Thursday, November 30, 2017 12:38 PM
> > To: dev@ctakes.apache.org
> > Subject: Re: Regarding cTakes version upadtion
> >
> > Thank you James,
> >
> > just i am using Maven dependencies and i created one pipline class in
> > that one AggregateBuilder for fastlookup,
> >
> > next i created one servlet for accessing AggregateBuilder.
> >
> > i did every thing .. But i am getting this Exception..
> >
> > ////////////////////////////////////////////////////////////
> //////////////
> >
> > log4j: Level value for root is [INFO].
> > log4j: root level set to INFO
> > log4j: Class name: [org.apache.log4j.ConsoleAppender]
> > log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
> > log4j: Setting property [conversionPattern] to [%d{dd MMM yyyy HH:mm:ss}
> > %5p %c{1} - %m%n].
> > log4j: Adding appender named [consoleAppender] to category [root].
> > 30 Nov 2017 12:27:02 INFO LvgAnnotator - URL for lvg.properties
> > =file:/C:/Users/NI3102/.m2/repository/net/sourceforge/
> > ctakesresources/ctakes-resources-lvg2008/4.0.0/
> > ctakes-resources-lvg2008-4.0.0.jar!/org/apache/ctakes/lvg/
> > data/config/lvg.properties
> > 2017-11-30 12:27:11.055:WARN:/:unavailable
> > org.apache.uima.resource.ResourceInitializationException: Initialization
> > of annotator class "org.apache.ctakes.temporal.ae.
> > EventEventRelationAnnotator"
> > failed. (Descriptor: <unknown>)
> > at
> > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> > initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:252)
> > at
> > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> > initialize(PrimitiveAnalysisEngine_impl.java:156)
> > at
> > org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(
> > AnalysisEngineFactory_impl.java:94)
> > at
> > org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(
> > CompositeResourceFactory_impl.java:62)
> > at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
> > at
> > org.apache.uima.UIMAFramework.produceAnalysisEngine(
> > UIMAFramework.java:387)
> > at
> > org.apache.uima.analysis_engine.asb.impl.ASB_impl.
> setup(ASB_impl.java:254)
> > at
> > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initASB(
> > AggregateAnalysisEngine_impl.java:431)
> > at
> > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> > initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
> > at
> > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> > initialize(AggregateAnalysisEngine_impl.java:185)
> > at
> > org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(
> > AnalysisEngineFactory.java:711)
> > at
> > org.apache.uima.fit.factory.AggregateBuilder.createAggregate(
> > AggregateBuilder.java:207)
> > at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
> > at
> > org.eclipse.jetty.servlet.ServletHolder.initServlet(
> > ServletHolder.java:532)
> > at org.eclipse.jetty.servlet.ServletHolder.doStart(
> ServletHolder.java:344)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > org.eclipse.jetty.servlet.ServletHandler.initialize(
> > ServletHandler.java:791)
> > at
> > org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> > ServletContextHandler.java:265)
> > at
> > org.eclipse.jetty.webapp.WebAppContext.startContext(
> > WebAppContext.java:1242)
> > at
> > org.eclipse.jetty.server.handler.ContextHandler.
> > doStart(ContextHandler.java:717)
> > at org.eclipse.jetty.webapp.WebAppContext.doStart(
> WebAppContext.java:494)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > org.eclipse.jetty.server.handler.HandlerWrapper.
> > doStart(HandlerWrapper.java:95)
> > at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > net.sourceforge.eclipsejetty.starter.embedded.
> JettyEmbeddedAdapter.start(
> > JettyEmbeddedAdapter.java:67)
> > at
> > net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> > launch(AbstractJettyLauncherMain.java:84)
> > at
> > net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> > main(JettyEmbeddedLauncherMain.java:42)
> > Caused by:
> > org.apache.uima.resource.ResourceInitializationException
> > at org.cleartk.ml.CleartkAnnotator.initialize(CleartkAnnotator.java:137)
> > at
> > org.apache.ctakes.temporal.ae.TemporalRelationExtractorAnnot
> > ator.initialize(TemporalRelationExtractorAnnotator.java:164)
> > at
> > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> > initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
> > at
> > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> > initialize(PrimitiveAnalysisEngine_impl.java:156)
> > at
> > org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(
> > AnalysisEngineFactory_impl.java:94)
> > at
> > org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(
> > CompositeResourceFactory_impl.java:62)
> > at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
> > at
> > org.apache.uima.UIMAFramework.produceAnalysisEngine(
> > UIMAFramework.java:387)
> > at
> > org.apache.uima.analysis_engine.asb.impl.ASB_impl.
> setup(ASB_impl.java:254)
> > at
> > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initASB(
> > AggregateAnalysisEngine_impl.java:431)
> > at
> > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> > initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
> > at
> > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> > initialize(AggregateAnalysisEngine_impl.java:185)
> > at
> > org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(
> > AnalysisEngineFactory.java:711)
> > at
> > org.apache.uima.fit.factory.AggregateBuilder.createAggregate(
> > AggregateBuilder.java:207)
> > at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
> > at
> > org.eclipse.jetty.servlet.ServletHolder.initServlet(
> > ServletHolder.java:532)
> > at org.eclipse.jetty.servlet.ServletHolder.doStart(
> ServletHolder.java:344)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > org.eclipse.jetty.servlet.ServletHandler.initialize(
> > ServletHandler.java:791)
> > at
> > org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> > ServletContextHandler.java:265)
> > at
> > org.eclipse.jetty.webapp.WebAppContext.startContext(
> > WebAppContext.java:1242)
> > at
> > org.eclipse.jetty.server.handler.ContextHandler.
> > doStart(ContextHandler.java:717)
> > at org.eclipse.jetty.webapp.WebAppContext.doStart(
> WebAppContext.java:494)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > org.eclipse.jetty.server.handler.HandlerWrapper.
> > doStart(HandlerWrapper.java:95)
> > at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > net.sourceforge.eclipsejetty.starter.embedded.
> JettyEmbeddedAdapter.start(
> > JettyEmbeddedAdapter.java:67)
> > at
> > net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> > launch(AbstractJettyLauncherMain.java:84)
> > at
> > net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> > main(JettyEmbeddedLauncherMain.java:42)
> > Caused by:
> > java.io.FileNotFoundException:
> > \org\apache\ctakes\temporal\ae\eventevent\20150630\model.jar (The system
> > cannot find the path specified) at java.io.FileInputStream.open0(Native
> > Method) at java.io.FileInputStream.open(Unknown Source) at
> > java.io.FileInputStream.<init>(Unknown Source) at
> > java.io.FileInputStream.<init>(Unknown Source) at
> > org.cleartk.ml.jar.GenericJarClassifierFactory.createClassifier(
> > GenericJarClassifierFactory.java:69)
> > at
> > org.cleartk.ml.jar.JarClassifierFactory.createClassifier(
> > JarClassifierFactory.java:35)
> > at org.cleartk.ml.CleartkAnnotator.initialize(CleartkAnnotator.java:135)
> > at
> > org.apache.ctakes.temporal.ae.TemporalRelationExtractorAnnot
> > ator.initialize(TemporalRelationExtractorAnnotator.java:164)
> > at
> > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> > initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
> > at
> > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> > initialize(PrimitiveAnalysisEngine_impl.java:156)
> > at
> > org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(
> > AnalysisEngineFactory_impl.java:94)
> > at
> > org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(
> > CompositeResourceFactory_impl.java:62)
> > at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
> > at
> > org.apache.uima.UIMAFramework.produceAnalysisEngine(
> > UIMAFramework.java:387)
> > at
> > org.apache.uima.analysis_engine.asb.impl.ASB_impl.
> setup(ASB_impl.java:254)
> > at
> > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initASB(
> > AggregateAnalysisEngine_impl.java:431)
> > at
> > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> > initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
> > at
> > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> > initialize(AggregateAnalysisEngine_impl.java:185)
> > at
> > org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(
> > AnalysisEngineFactory.java:711)
> > at
> > org.apache.uima.fit.factory.AggregateBuilder.createAggregate(
> > AggregateBuilder.java:207)
> > at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
> > at
> > org.eclipse.jetty.servlet.ServletHolder.initServlet(
> > ServletHolder.java:532)
> > at org.eclipse.jetty.servlet.ServletHolder.doStart(
> ServletHolder.java:344)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > org.eclipse.jetty.servlet.ServletHandler.initialize(
> > ServletHandler.java:791)
> > at
> > org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> > ServletContextHandler.java:265)
> > at
> > org.eclipse.jetty.webapp.WebAppContext.startContext(
> > WebAppContext.java:1242)
> > at
> > org.eclipse.jetty.server.handler.ContextHandler.
> > doStart(ContextHandler.java:717)
> > at org.eclipse.jetty.webapp.WebAppContext.doStart(
> WebAppContext.java:494)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > org.eclipse.jetty.server.handler.HandlerWrapper.
> > doStart(HandlerWrapper.java:95)
> > at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > net.sourceforge.eclipsejetty.starter.embedded.
> JettyEmbeddedAdapter.start(
> > JettyEmbeddedAdapter.java:67)
> > at
> > net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> > launch(AbstractJettyLauncherMain.java:84)
> > at
> > net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> > main(JettyEmbeddedLauncherMain.java:42)
> > 2017-11-30 12:27:11.058:WARN:oejuc.AbstractLifeCycle:FAILED
> > cTakesWebClass:
> > javax.servlet.ServletException:
> > org.apache.uima.resource.ResourceInitializationException: Initialization
> > of annotator class "org.apache.ctakes.temporal.ae.
> > EventEventRelationAnnotator"
> > failed. (Descriptor: <unknown>)
> > javax.servlet.ServletException:
> > org.apache.uima.resource.ResourceInitializationException: Initialization
> > of annotator class "org.apache.ctakes.temporal.ae.
> > EventEventRelationAnnotator"
> > failed. (Descriptor: <unknown>)
> > at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:38)
> > at
> > org.eclipse.jetty.servlet.ServletHolder.initServlet(
> > ServletHolder.java:532)
> > at org.eclipse.jetty.servlet.ServletHolder.doStart(
> ServletHolder.java:344)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > org.eclipse.jetty.servlet.ServletHandler.initialize(
> > ServletHandler.java:791)
> > at
> > org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> > ServletContextHandler.java:265)
> > at
> > org.eclipse.jetty.webapp.WebAppContext.startContext(
> > WebAppContext.java:1242)
> > at
> > org.eclipse.jetty.server.handler.ContextHandler.
> > doStart(ContextHandler.java:717)
> > at org.eclipse.jetty.webapp.WebAppContext.doStart(
> WebAppContext.java:494)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > org.eclipse.jetty.server.handler.HandlerWrapper.
> > doStart(HandlerWrapper.java:95)
> > at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > net.sourceforge.eclipsejetty.starter.embedded.
> JettyEmbeddedAdapter.start(
> > JettyEmbeddedAdapter.java:67)
> > at
> > net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> > launch(AbstractJettyLauncherMain.java:84)
> > at
> > net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> > main(JettyEmbeddedLauncherMain.java:42)
> > Caused by:
> > org.apache.uima.resource.ResourceInitializationException: Initialization
> > of annotator class "org.apache.ctakes.temporal.ae.
> > EventEventRelationAnnotator"
> > failed. (Descriptor: <unknown>)
> > at
> > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> > initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:252)
> > at
> > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> > initialize(PrimitiveAnalysisEngine_impl.java:156)
> > at
> > org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(
> > AnalysisEngineFactory_impl.java:94)
> > at
> > org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(
> > CompositeResourceFactory_impl.java:62)
> > at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
> > at
> > org.apache.uima.UIMAFramework.produceAnalysisEngine(
> > UIMAFramework.java:387)
> > at
> > org.apache.uima.analysis_engine.asb.impl.ASB_impl.
> setup(ASB_impl.java:254)
> > at
> > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initASB(
> > AggregateAnalysisEngine_impl.java:431)
> > at
> > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> > initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
> > at
> > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> > initialize(AggregateAnalysisEngine_impl.java:185)
> > at
> > org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(
> > AnalysisEngineFactory.java:711)
> > at
> > org.apache.uima.fit.factory.AggregateBuilder.createAggregate(
> > AggregateBuilder.java:207)
> > at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
> > at
> > org.eclipse.jetty.servlet.ServletHolder.initServlet(
> > ServletHolder.java:532)
> > at org.eclipse.jetty.servlet.ServletHolder.doStart(
> ServletHolder.java:344)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > org.eclipse.jetty.servlet.ServletHandler.initialize(
> > ServletHandler.java:791)
> > at
> > org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> > ServletContextHandler.java:265)
> > at
> > org.eclipse.jetty.webapp.WebAppContext.startContext(
> > WebAppContext.java:1242)
> > at
> > org.eclipse.jetty.server.handler.ContextHandler.
> > doStart(ContextHandler.java:717)
> > at org.eclipse.jetty.webapp.WebAppContext.doStart(
> WebAppContext.java:494)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > org.eclipse.jetty.server.handler.HandlerWrapper.
> > doStart(HandlerWrapper.java:95)
> > at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > net.sourceforge.eclipsejetty.starter.embedded.
> JettyEmbeddedAdapter.start(
> > JettyEmbeddedAdapter.java:67)
> > at
> > net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> > launch(AbstractJettyLauncherMain.java:84)
> > at
> > net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> > main(JettyEmbeddedLauncherMain.java:42)
> > Caused by:
> > org.apache.uima.resource.ResourceInitializationException
> > at org.cleartk.ml.CleartkAnnotator.initialize(CleartkAnnotator.java:137)
> > at
> > org.apache.ctakes.temporal.ae.TemporalRelationExtractorAnnot
> > ator.initialize(TemporalRelationExtractorAnnotator.java:164)
> > at
> > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> > initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
> > at
> > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> > initialize(PrimitiveAnalysisEngine_impl.java:156)
> > at
> > org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(
> > AnalysisEngineFactory_impl.java:94)
> > at
> > org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(
> > CompositeResourceFactory_impl.java:62)
> > at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
> > at
> > org.apache.uima.UIMAFramework.produceAnalysisEngine(
> > UIMAFramework.java:387)
> > at
> > org.apache.uima.analysis_engine.asb.impl.ASB_impl.
> setup(ASB_impl.java:254)
> > at
> > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initASB(
> > AggregateAnalysisEngine_impl.java:431)
> > at
> > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> > initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
> > at
> > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> > initialize(AggregateAnalysisEngine_impl.java:185)
> > at
> > org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(
> > AnalysisEngineFactory.java:711)
> > at
> > org.apache.uima.fit.factory.AggregateBuilder.createAggregate(
> > AggregateBuilder.java:207)
> > at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
> > at
> > org.eclipse.jetty.servlet.ServletHolder.initServlet(
> > ServletHolder.java:532)
> > at org.eclipse.jetty.servlet.ServletHolder.doStart(
> ServletHolder.java:344)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > org.eclipse.jetty.servlet.ServletHandler.initialize(
> > ServletHandler.java:791)
> > at
> > org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> > ServletContextHandler.java:265)
> > at
> > org.eclipse.jetty.webapp.WebAppContext.startContext(
> > WebAppContext.java:1242)
> > at
> > org.eclipse.jetty.server.handler.ContextHandler.
> > doStart(ContextHandler.java:717)
> > at org.eclipse.jetty.webapp.WebAppContext.doStart(
> WebAppContext.java:494)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > org.eclipse.jetty.server.handler.HandlerWrapper.
> > doStart(HandlerWrapper.java:95)
> > at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > net.sourceforge.eclipsejetty.starter.embedded.
> JettyEmbeddedAdapter.start(
> > JettyEmbeddedAdapter.java:67)
> > at
> > net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> > launch(AbstractJettyLauncherMain.java:84)
> > at
> > net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> > main(JettyEmbeddedLauncherMain.java:42)
> > Caused by:
> > java.io.FileNotFoundException:
> > \org\apache\ctakes\temporal\ae\eventevent\20150630\model.jar (The system
> > cannot find the path specified) at java.io.FileInputStream.open0(Native
> > Method) at java.io.FileInputStream.open(Unknown Source) at
> > java.io.FileInputStream.<init>(Unknown Source) at
> > java.io.FileInputStream.<init>(Unknown Source) at
> > org.cleartk.ml.jar.GenericJarClassifierFactory.createClassifier(
> > GenericJarClassifierFactory.java:69)
> > at
> > org.cleartk.ml.jar.JarClassifierFactory.createClassifier(
> > JarClassifierFactory.java:35)
> > at org.cleartk.ml.CleartkAnnotator.initialize(CleartkAnnotator.java:135)
> > at
> > org.apache.ctakes.temporal.ae.TemporalRelationExtractorAnnot
> > ator.initialize(TemporalRelationExtractorAnnotator.java:164)
> > at
> > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> > initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
> > at
> > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> > initialize(PrimitiveAnalysisEngine_impl.java:156)
> > at
> > org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(
> > AnalysisEngineFactory_impl.java:94)
> > at
> > org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(
> > CompositeResourceFactory_impl.java:62)
> > at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
> > at
> > org.apache.uima.UIMAFramework.produceAnalysisEngine(
> > UIMAFramework.java:387)
> > at
> > org.apache.uima.analysis_engine.asb.impl.ASB_impl.
> setup(ASB_impl.java:254)
> > at
> > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initASB(
> > AggregateAnalysisEngine_impl.java:431)
> > at
> > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> > initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
> > at
> > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> > initialize(AggregateAnalysisEngine_impl.java:185)
> > at
> > org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(
> > AnalysisEngineFactory.java:711)
> > at
> > org.apache.uima.fit.factory.AggregateBuilder.createAggregate(
> > AggregateBuilder.java:207)
> > at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
> > at
> > org.eclipse.jetty.servlet.ServletHolder.initServlet(
> > ServletHolder.java:532)
> > at org.eclipse.jetty.servlet.ServletHolder.doStart(
> ServletHolder.java:344)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > org.eclipse.jetty.servlet.ServletHandler.initialize(
> > ServletHandler.java:791)
> > at
> > org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> > ServletContextHandler.java:265)
> > at
> > org.eclipse.jetty.webapp.WebAppContext.startContext(
> > WebAppContext.java:1242)
> > at
> > org.eclipse.jetty.server.handler.ContextHandler.
> > doStart(ContextHandler.java:717)
> > at org.eclipse.jetty.webapp.WebAppContext.doStart(
> WebAppContext.java:494)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > org.eclipse.jetty.server.handler.HandlerWrapper.
> > doStart(HandlerWrapper.java:95)
> > at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > net.sourceforge.eclipsejetty.starter.embedded.
> JettyEmbeddedAdapter.start(
> > JettyEmbeddedAdapter.java:67)
> > at
> > net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> > launch(AbstractJettyLauncherMain.java:84)
> > at
> > net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> > main(JettyEmbeddedLauncherMain.java:42)
> > 2017-11-30 12:27:11.066:WARN:oejs.Holder:
> > java.lang.ClassNotFoundException:
> > com.sun.jersey.spi.container.servlet.ServletContainer
> > at java.net.URLClassLoader.findClass(Unknown Source) at
> > java.lang.ClassLoader.loadClass(Unknown Source) at sun.misc.Launcher$
> > AppClassLoader.loadClass(Unknown Source) at java.lang.ClassLoader.
> loadClass(Unknown
> > Source) at
> > org.eclipse.jetty.webapp.WebAppClassLoader.loadClass(
> > WebAppClassLoader.java:430)
> > at
> > org.eclipse.jetty.webapp.WebAppClassLoader.loadClass(
> > WebAppClassLoader.java:383)
> > at org.eclipse.jetty.util.Loader.loadClass(Loader.java:100)
> > at org.eclipse.jetty.util.Loader.loadClass(Loader.java:79)
> > at org.eclipse.jetty.servlet.Holder.doStart(Holder.java:107)
> > at org.eclipse.jetty.servlet.ServletHolder.doStart(
> ServletHolder.java:298)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > org.eclipse.jetty.servlet.ServletHandler.initialize(
> > ServletHandler.java:791)
> > at
> > org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> > ServletContextHandler.java:265)
> > at
> > org.eclipse.jetty.webapp.WebAppContext.startContext(
> > WebAppContext.java:1242)
> > at
> > org.eclipse.jetty.server.handler.ContextHandler.
> > doStart(ContextHandler.java:717)
> > at org.eclipse.jetty.webapp.WebAppContext.doStart(
> WebAppContext.java:494)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > org.eclipse.jetty.server.handler.HandlerWrapper.
> > doStart(HandlerWrapper.java:95)
> > at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > net.sourceforge.eclipsejetty.starter.embedded.
> JettyEmbeddedAdapter.start(
> > JettyEmbeddedAdapter.java:67)
> > at
> > net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> > launch(AbstractJettyLauncherMain.java:84)
> > at
> > net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> > main(JettyEmbeddedLauncherMain.java:42)
> > 2017-11-30 12:27:11.066:WARN:/:unavailable
> > javax.servlet.UnavailableException:
> > com.sun.jersey.spi.container.servlet.ServletContainer
> > at org.eclipse.jetty.servlet.Holder.doStart(Holder.java:114)
> > at org.eclipse.jetty.servlet.ServletHolder.doStart(
> ServletHolder.java:298)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > org.eclipse.jetty.servlet.ServletHandler.initialize(
> > ServletHandler.java:791)
> > at
> > org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> > ServletContextHandler.java:265)
> > at
> > org.eclipse.jetty.webapp.WebAppContext.startContext(
> > WebAppContext.java:1242)
> > at
> > org.eclipse.jetty.server.handler.ContextHandler.
> > doStart(ContextHandler.java:717)
> > at org.eclipse.jetty.webapp.WebAppContext.doStart(
> WebAppContext.java:494)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > org.eclipse.jetty.server.handler.HandlerWrapper.
> > doStart(HandlerWrapper.java:95)
> > at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > net.sourceforge.eclipsejetty.starter.embedded.
> JettyEmbeddedAdapter.start(
> > JettyEmbeddedAdapter.java:67)
> > at
> > net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> > launch(AbstractJettyLauncherMain.java:84)
> > at
> > net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> > main(JettyEmbeddedLauncherMain.java:42)
> > 2017-11-30 12:27:11.066:WARN:oejuc.AbstractLifeCycle:FAILED Jersey
> RESTful
> > Application: javax.servlet.UnavailableException:
> > com.sun.jersey.spi.container.servlet.ServletContainer
> > javax.servlet.UnavailableException:
> > com.sun.jersey.spi.container.servlet.ServletContainer
> > at org.eclipse.jetty.servlet.Holder.doStart(Holder.java:114)
> > at org.eclipse.jetty.servlet.ServletHolder.doStart(
> ServletHolder.java:298)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > org.eclipse.jetty.servlet.ServletHandler.initialize(
> > ServletHandler.java:791)
> > at
> > org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> > ServletContextHandler.java:265)
> > at
> > org.eclipse.jetty.webapp.WebAppContext.startContext(
> > WebAppContext.java:1242)
> > at
> > org.eclipse.jetty.server.handler.ContextHandler.
> > doStart(ContextHandler.java:717)
> > at org.eclipse.jetty.webapp.WebAppContext.doStart(
> WebAppContext.java:494)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > org.eclipse.jetty.server.handler.HandlerWrapper.
> > doStart(HandlerWrapper.java:95)
> > at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > net.sourceforge.eclipsejetty.starter.embedded.
> JettyEmbeddedAdapter.start(
> > JettyEmbeddedAdapter.java:67)
> > at
> > net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> > launch(AbstractJettyLauncherMain.java:84)
> > at
> > net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> > main(JettyEmbeddedLauncherMain.java:42)
> > 2017-11-30 12:27:11.067:WARN:oejw.WebAppContext:Failed startup of
> context
> > o.e.j.w.WebAppContext{/,file:/E:/cTakesLive/cTakes4.0/
> > WebContent/},E:\cTakesLive\cTakes4.0\WebContent
> > MultiException[javax.servlet.ServletException:
> > org.apache.uima.resource.ResourceInitializationException: Initialization
> > of annotator class "org.apache.ctakes.temporal.ae.
> > EventEventRelationAnnotator"
> > failed. (Descriptor: <unknown>), javax.servlet.UnavailableException:
> > com.sun.jersey.spi.container.servlet.ServletContainer]
> > at
> > org.eclipse.jetty.servlet.ServletHandler.initialize(
> > ServletHandler.java:762)
> > at
> > org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> > ServletContextHandler.java:265)
> > at
> > org.eclipse.jetty.webapp.WebAppContext.startContext(
> > WebAppContext.java:1242)
> > at
> > org.eclipse.jetty.server.handler.ContextHandler.
> > doStart(ContextHandler.java:717)
> > at org.eclipse.jetty.webapp.WebAppContext.doStart(
> WebAppContext.java:494)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > org.eclipse.jetty.server.handler.HandlerWrapper.
> > doStart(HandlerWrapper.java:95)
> > at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > net.sourceforge.eclipsejetty.starter.embedded.
> JettyEmbeddedAdapter.start(
> > JettyEmbeddedAdapter.java:67)
> > at
> > net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> > launch(AbstractJettyLauncherMain.java:84)
> > at
> > net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> > main(JettyEmbeddedLauncherMain.java:42)
> > 2017-11-30 12:27:11.150:INFO:oejs.AbstractConnector:Started
> > SelectChannelConnector@0.0.0.0:8080
> >
> >
> > /////////////////////////////////////////////////////////////////
> >
> > How can I solve this please help me.
> >
> > regards,
> > shyam k.
> >
> > On Thu, Nov 30, 2017 at 1:59 AM, James Masanz <ma...@gmail.com>
> > wrote:
> >
> > > First, take a look at changes that might affect you, listed on the
> > > Wiki
> > > here:
> > >
> > > https://urldefense.proofpoint.com/v2/url?u=https-3A__cwiki.
> apache.org_confluence_display_CTAKES_New-2B&d=DwIBaQ&c=qS4goWBT7poplM69zy_
> 3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=
> GMS7z6wXokcMqQHAUda8o3XxG1M868mv_PRYbKeB0Zc&s=
> uosucKTceY1WhBHP6_cDURFltyO-A-O8mm603JhoYQs&e=
> > > for+4.0#Newfor4.0-Changes
> > >
> > > I think in order to answer well, I'd need an explanation of how you
> > > are using cTAKES now - just as maven dependencies? Or do you install
> > > from a .tar.gz (or .zip)? Or do you check out the code from SVN?
> > > Have you made modifications to cTAKES itself?
> > >
> > >
> > >
> > > On Wed, Nov 29, 2017 at 10:26 AM, Ks Sunder <sh...@gmail.com>
> wrote:
> > >
> > > > Hi,
> > > >
> > > >
> > > > What are the steps need to change ctakes 3.x version to ctakes 4
> > > > version
> > > ,
> > > > and can I change maven dependency..?
> > > >
> > > > Please help me.
> > > >
> > > > Regards,
> > > > Shyam k.
> > > >
> > >
> > This email and any files transmitted with it are confidential and
> intended
> > solely for the use of the individual or entity to whom they are
> addressed.
> > If you are not the named addressee you should not disseminate, distribute
> > or copy this e-mail. Please notify the sender or system manager by email
> > immediately if you have received this e-mail by mistake and delete this
> > e-mail from your system. If you are not the intended recipient you are
> > notified that disclosing, copying, distributing or taking any action in
> > reliance on the contents of this information is strictly prohibited and
> > against the law.
> >
>
This email and any files transmitted with it are confidential and intended solely for the use of the individual or entity to whom they are addressed. If you are not the named addressee you should not disseminate, distribute or copy this e-mail. Please notify the sender or system manager by email immediately if you have received this e-mail by mistake and delete this e-mail from your system. If you are not the intended recipient you are notified that disclosing, copying, distributing or taking any action in reliance on the contents of this information is strictly prohibited and against the law.
Re: Regarding cTakes version upadtion [EXTERNAL]
Posted by Ks Sunder <sh...@gmail.com>.
Hi,
when i am using cTakes3.2.2 after maven install , cTakes all modules
available at src folder in that i changed username and pwd.
but cTakes4.0 is jsut created war file of cTakes modules .. i am confused
how can change username and pwd in cTakes4.0..?
can we have any properties files for that...?
please help me..
On Thu, Nov 30, 2017 at 7:42 PM, Finan, Sean <
Sean.Finan@childrens.harvard.edu> wrote:
> Hi Shyam k,
>
> Are you sure that you changed your umls credentials? How did you change
> them? It doesn't look like your change went through since your error is
> still:
> > is not valid for user CHANGE_ME with CHANGE_ME
>
> Sean
>
> -----Original Message-----
> From: Ks Sunder [mailto:shyam769@gmail.com]
> Sent: Thursday, November 30, 2017 3:41 AM
> To: dev@ctakes.apache.org
> Subject: Re: Regarding cTakes version upadtion [EXTERNAL]
>
> Hi,
>
> I commented in Pipeline :
> \org\apache\ctakes\temporal\ae\eventevent\20150630\model.jar
>
> stitll i am getting this error : UMLS Account at
> https://urldefense.proofpoint.com/v2/url?u=https-3A__uts-
> 2Dws.nlm.nih.gov_restful_isValidUMLSUser&d=DwIBaQ&c=qS4goWBT7poplM69zy_
> 3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=
> GMS7z6wXokcMqQHAUda8o3XxG1M868mv_PRYbKeB0Zc&s=
> le1pEnmgizyhdYQnzNGbDFgXFy53cl2Jj51E-IjkQck&e= is not valid for user
> CHANGE_ME with CHANGE_ME ,
> I changed UMLusername and password its notworking, but cTakes 3.x is
> working properly through current Uml credentials,
> we need any other credential for cTakes4.0...?
>
> Error////////////////////////////////////////////////////////
>
>
> 30 Nov 2017 14:07:16 INFO DictionaryDescriptorParser - Parsing dictionary
> specifications:
> 30 Nov 2017 14:07:16 INFO UmlsUserApprover - Checking UMLS Account at
> https://urldefense.proofpoint.com/v2/url?u=https-3A__uts-
> 2Dws.nlm.nih.gov_restful_isValidUMLSUser&d=DwIBaQ&c=qS4goWBT7poplM69zy_
> 3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=
> GMS7z6wXokcMqQHAUda8o3XxG1M868mv_PRYbKeB0Zc&s=
> le1pEnmgizyhdYQnzNGbDFgXFy53cl2Jj51E-IjkQck&e= for user CHANGE_ME:
> ........30 Nov 2017 14:07:18 ERROR UmlsUserApprover - UMLS Account at
> https://urldefense.proofpoint.com/v2/url?u=https-3A__uts-
> 2Dws.nlm.nih.gov_restful_isValidUMLSUser&d=DwIBaQ&c=qS4goWBT7poplM69zy_
> 3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=
> GMS7z6wXokcMqQHAUda8o3XxG1M868mv_PRYbKeB0Zc&s=
> le1pEnmgizyhdYQnzNGbDFgXFy53cl2Jj51E-IjkQck&e= is not valid for user
> CHANGE_ME with CHANGE_ME
>
> 2017-11-30 14:07:18.867:WARN:/:unavailable
> org.apache.uima.resource.ResourceInitializationException: Initialization
> of
> annotator class
> "org.apache.ctakes.dictionary.lookup2.ae.DefaultJCasTermAnnotator" failed.
> (Descriptor: <unknown>)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:252)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initialize(PrimitiveAnalysisEngine_impl.java:156)
> at
> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(
> AnalysisEngineFactory_impl.java:94)
> at
> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(
> CompositeResourceFactory_impl.java:62)
> at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
> at
> org.apache.uima.UIMAFramework.produceAnalysisEngine(
> UIMAFramework.java:387)
> at
> org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(
> AggregateAnalysisEngine_impl.java:431)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initialize(AggregateAnalysisEngine_impl.java:185)
> at
> org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(
> AnalysisEngineFactory.java:711)
> at
> org.apache.uima.fit.factory.AggregateBuilder.createAggregate(
> AggregateBuilder.java:207)
> at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
> at
> org.eclipse.jetty.servlet.ServletHolder.initServlet(
> ServletHolder.java:532)
> at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.servlet.ServletHandler.initialize(
> ServletHandler.java:791)
> at
> org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> ServletContextHandler.java:265)
> at
> org.eclipse.jetty.webapp.WebAppContext.startContext(
> WebAppContext.java:1242)
> at
> org.eclipse.jetty.server.handler.ContextHandler.
> doStart(ContextHandler.java:717)
> at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.server.handler.HandlerWrapper.
> doStart(HandlerWrapper.java:95)
> at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(
> JettyEmbeddedAdapter.java:67)
> at
> net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> launch(AbstractJettyLauncherMain.java:84)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> main(JettyEmbeddedLauncherMain.java:42)
> Caused by:
> org.apache.uima.resource.ResourceInitializationException: EXCEPTION
> MESSAGE
> LOCALIZATION FAILED: java.util.MissingResourceException: Can't find
> resource for bundle java.util.PropertyResourceBundle, key Could not
> construct
> org.apache.ctakes.dictionary.lookup2.dictionary.UmlsJdbcRareWordDictionary
> at
> org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.
> initialize(AbstractJCasTermAnnotator.java:131)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initialize(PrimitiveAnalysisEngine_impl.java:156)
> at
> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(
> AnalysisEngineFactory_impl.java:94)
> at
> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(
> CompositeResourceFactory_impl.java:62)
> at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
> at
> org.apache.uima.UIMAFramework.produceAnalysisEngine(
> UIMAFramework.java:387)
> at
> org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(
> AggregateAnalysisEngine_impl.java:431)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initialize(AggregateAnalysisEngine_impl.java:185)
> at
> org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(
> AnalysisEngineFactory.java:711)
> at
> org.apache.uima.fit.factory.AggregateBuilder.createAggregate(
> AggregateBuilder.java:207)
> at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
> at
> org.eclipse.jetty.servlet.ServletHolder.initServlet(
> ServletHolder.java:532)
> at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.servlet.ServletHandler.initialize(
> ServletHandler.java:791)
> at
> org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> ServletContextHandler.java:265)
> at
> org.eclipse.jetty.webapp.WebAppContext.startContext(
> WebAppContext.java:1242)
> at
> org.eclipse.jetty.server.handler.ContextHandler.
> doStart(ContextHandler.java:717)
> at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.server.handler.HandlerWrapper.
> doStart(HandlerWrapper.java:95)
> at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(
> JettyEmbeddedAdapter.java:67)
> at
> net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> launch(AbstractJettyLauncherMain.java:84)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> main(JettyEmbeddedLauncherMain.java:42)
> Caused by:
> org.apache.uima.analysis_engine.annotator.AnnotatorContextException:
> EXCEPTION MESSAGE LOCALIZATION FAILED: java.util.MissingResourceException:
> Can't find resource for bundle java.util.PropertyResourceBundle, key Could
> not construct
> org.apache.ctakes.dictionary.lookup2.dictionary.UmlsJdbcRareWordDictionary
> at
> org.apache.ctakes.dictionary.lookup2.dictionary.
> DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser.
> java:199)
> at
> org.apache.ctakes.dictionary.lookup2.dictionary.
> DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser.
> java:156)
> at
> org.apache.ctakes.dictionary.lookup2.dictionary.
> DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.
> java:128)
> at
> org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.
> initialize(AbstractJCasTermAnnotator.java:129)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initialize(PrimitiveAnalysisEngine_impl.java:156)
> at
> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(
> AnalysisEngineFactory_impl.java:94)
> at
> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(
> CompositeResourceFactory_impl.java:62)
> at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
> at
> org.apache.uima.UIMAFramework.produceAnalysisEngine(
> UIMAFramework.java:387)
> at
> org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(
> AggregateAnalysisEngine_impl.java:431)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initialize(AggregateAnalysisEngine_impl.java:185)
> at
> org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(
> AnalysisEngineFactory.java:711)
> at
> org.apache.uima.fit.factory.AggregateBuilder.createAggregate(
> AggregateBuilder.java:207)
> at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
> at
> org.eclipse.jetty.servlet.ServletHolder.initServlet(
> ServletHolder.java:532)
> at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.servlet.ServletHandler.initialize(
> ServletHandler.java:791)
> at
> org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> ServletContextHandler.java:265)
> at
> org.eclipse.jetty.webapp.WebAppContext.startContext(
> WebAppContext.java:1242)
> at
> org.eclipse.jetty.server.handler.ContextHandler.
> doStart(ContextHandler.java:717)
> at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.server.handler.HandlerWrapper.
> doStart(HandlerWrapper.java:95)
> at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(
> JettyEmbeddedAdapter.java:67)
> at
> net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> launch(AbstractJettyLauncherMain.java:84)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> main(JettyEmbeddedLauncherMain.java:42)
> Caused by:
> java.lang.reflect.InvocationTargetException
> at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
> at sun.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source)
> at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown
> Source)
> at java.lang.reflect.Constructor.newInstance(Unknown Source)
> at
> org.apache.ctakes.dictionary.lookup2.dictionary.
> DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser.
> java:196)
> at
> org.apache.ctakes.dictionary.lookup2.dictionary.
> DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser.
> java:156)
> at
> org.apache.ctakes.dictionary.lookup2.dictionary.
> DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.
> java:128)
> at
> org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.
> initialize(AbstractJCasTermAnnotator.java:129)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initialize(PrimitiveAnalysisEngine_impl.java:156)
> at
> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(
> AnalysisEngineFactory_impl.java:94)
> at
> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(
> CompositeResourceFactory_impl.java:62)
> at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
> at
> org.apache.uima.UIMAFramework.produceAnalysisEngine(
> UIMAFramework.java:387)
> at
> org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(
> AggregateAnalysisEngine_impl.java:431)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initialize(AggregateAnalysisEngine_impl.java:185)
> at
> org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(
> AnalysisEngineFactory.java:711)
> at
> org.apache.uima.fit.factory.AggregateBuilder.createAggregate(
> AggregateBuilder.java:207)
> at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
> at
> org.eclipse.jetty.servlet.ServletHolder.initServlet(
> ServletHolder.java:532)
> at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.servlet.ServletHandler.initialize(
> ServletHandler.java:791)
> at
> org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> ServletContextHandler.java:265)
> at
> org.eclipse.jetty.webapp.WebAppContext.startContext(
> WebAppContext.java:1242)
> at
> org.eclipse.jetty.server.handler.ContextHandler.
> doStart(ContextHandler.java:717)
> at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.server.handler.HandlerWrapper.
> doStart(HandlerWrapper.java:95)
> at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(
> JettyEmbeddedAdapter.java:67)
> at
> net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> launch(AbstractJettyLauncherMain.java:84)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> main(JettyEmbeddedLauncherMain.java:42)
> Caused by:
> java.sql.SQLException: Invalid User for UMLS dictionary sno_rx_16abTerms
> at
> org.apache.ctakes.dictionary.lookup2.dictionary.
> UmlsJdbcRareWordDictionary.<init>(UmlsJdbcRareWordDictionary.java:29)
> at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
> at sun.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source)
> at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown
> Source)
> at java.lang.reflect.Constructor.newInstance(Unknown Source)
> at
> org.apache.ctakes.dictionary.lookup2.dictionary.
> DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser.
> java:196)
> at
> org.apache.ctakes.dictionary.lookup2.dictionary.
> DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser.
> java:156)
> at
> org.apache.ctakes.dictionary.lookup2.dictionary.
> DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.
> java:128)
> at
> org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.
> initialize(AbstractJCasTermAnnotator.java:129)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initialize(PrimitiveAnalysisEngine_impl.java:156)
> at
> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(
> AnalysisEngineFactory_impl.java:94)
> at
> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(
> CompositeResourceFactory_impl.java:62)
> at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
> at
> org.apache.uima.UIMAFramework.produceAnalysisEngine(
> UIMAFramework.java:387)
> at
> org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(
> AggregateAnalysisEngine_impl.java:431)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initialize(AggregateAnalysisEngine_impl.java:185)
> at
> org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(
> AnalysisEngineFactory.java:711)
> at
> org.apache.uima.fit.factory.AggregateBuilder.createAggregate(
> AggregateBuilder.java:207)
> at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
> at
> org.eclipse.jetty.servlet.ServletHolder.initServlet(
> ServletHolder.java:532)
> at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.servlet.ServletHandler.initialize(
> ServletHandler.java:791)
> at
> org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> ServletContextHandler.java:265)
> at
> org.eclipse.jetty.webapp.WebAppContext.startContext(
> WebAppContext.java:1242)
> at
> org.eclipse.jetty.server.handler.ContextHandler.
> doStart(ContextHandler.java:717)
> at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.server.handler.HandlerWrapper.
> doStart(HandlerWrapper.java:95)
> at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(
> JettyEmbeddedAdapter.java:67)
> at
> net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> launch(AbstractJettyLauncherMain.java:84)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> main(JettyEmbeddedLauncherMain.java:42)
> 2017-11-30 14:07:18.872:WARN:oejuc.AbstractLifeCycle:FAILED
> cTakesWebClass:
> javax.servlet.ServletException:
> org.apache.uima.resource.ResourceInitializationException: Initialization
> of
> annotator class
> "org.apache.ctakes.dictionary.lookup2.ae.DefaultJCasTermAnnotator" failed.
> (Descriptor: <unknown>)
> javax.servlet.ServletException:
> org.apache.uima.resource.ResourceInitializationException: Initialization
> of
> annotator class
> "org.apache.ctakes.dictionary.lookup2.ae.DefaultJCasTermAnnotator" failed.
> (Descriptor: <unknown>)
> at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:38)
> at
> org.eclipse.jetty.servlet.ServletHolder.initServlet(
> ServletHolder.java:532)
> at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.servlet.ServletHandler.initialize(
> ServletHandler.java:791)
> at
> org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> ServletContextHandler.java:265)
> at
> org.eclipse.jetty.webapp.WebAppContext.startContext(
> WebAppContext.java:1242)
> at
> org.eclipse.jetty.server.handler.ContextHandler.
> doStart(ContextHandler.java:717)
> at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.server.handler.HandlerWrapper.
> doStart(HandlerWrapper.java:95)
> at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(
> JettyEmbeddedAdapter.java:67)
> at
> net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> launch(AbstractJettyLauncherMain.java:84)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> main(JettyEmbeddedLauncherMain.java:42)
> Caused by:
> org.apache.uima.resource.ResourceInitializationException: Initialization
> of
> annotator class
> "org.apache.ctakes.dictionary.lookup2.ae.DefaultJCasTermAnnotator" failed.
> (Descriptor: <unknown>)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:252)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initialize(PrimitiveAnalysisEngine_impl.java:156)
> at
> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(
> AnalysisEngineFactory_impl.java:94)
> at
> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(
> CompositeResourceFactory_impl.java:62)
> at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
> at
> org.apache.uima.UIMAFramework.produceAnalysisEngine(
> UIMAFramework.java:387)
> at
> org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(
> AggregateAnalysisEngine_impl.java:431)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initialize(AggregateAnalysisEngine_impl.java:185)
> at
> org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(
> AnalysisEngineFactory.java:711)
> at
> org.apache.uima.fit.factory.AggregateBuilder.createAggregate(
> AggregateBuilder.java:207)
> at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
> at
> org.eclipse.jetty.servlet.ServletHolder.initServlet(
> ServletHolder.java:532)
> at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.servlet.ServletHandler.initialize(
> ServletHandler.java:791)
> at
> org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> ServletContextHandler.java:265)
> at
> org.eclipse.jetty.webapp.WebAppContext.startContext(
> WebAppContext.java:1242)
> at
> org.eclipse.jetty.server.handler.ContextHandler.
> doStart(ContextHandler.java:717)
> at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.server.handler.HandlerWrapper.
> doStart(HandlerWrapper.java:95)
> at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(
> JettyEmbeddedAdapter.java:67)
> at
> net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> launch(AbstractJettyLauncherMain.java:84)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> main(JettyEmbeddedLauncherMain.java:42)
> Caused by:
> org.apache.uima.resource.ResourceInitializationException: EXCEPTION
> MESSAGE
> LOCALIZATION FAILED: java.util.MissingResourceException: Can't find
> resource for bundle java.util.PropertyResourceBundle, key Could not
> construct
> org.apache.ctakes.dictionary.lookup2.dictionary.UmlsJdbcRareWordDictionary
> at
> org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.
> initialize(AbstractJCasTermAnnotator.java:131)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initialize(PrimitiveAnalysisEngine_impl.java:156)
> at
> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(
> AnalysisEngineFactory_impl.java:94)
> at
> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(
> CompositeResourceFactory_impl.java:62)
> at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
> at
> org.apache.uima.UIMAFramework.produceAnalysisEngine(
> UIMAFramework.java:387)
> at
> org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(
> AggregateAnalysisEngine_impl.java:431)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initialize(AggregateAnalysisEngine_impl.java:185)
> at
> org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(
> AnalysisEngineFactory.java:711)
> at
> org.apache.uima.fit.factory.AggregateBuilder.createAggregate(
> AggregateBuilder.java:207)
> at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
> at
> org.eclipse.jetty.servlet.ServletHolder.initServlet(
> ServletHolder.java:532)
> at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.servlet.ServletHandler.initialize(
> ServletHandler.java:791)
> at
> org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> ServletContextHandler.java:265)
> at
> org.eclipse.jetty.webapp.WebAppContext.startContext(
> WebAppContext.java:1242)
> at
> org.eclipse.jetty.server.handler.ContextHandler.
> doStart(ContextHandler.java:717)
> at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.server.handler.HandlerWrapper.
> doStart(HandlerWrapper.java:95)
> at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(
> JettyEmbeddedAdapter.java:67)
> at
> net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> launch(AbstractJettyLauncherMain.java:84)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> main(JettyEmbeddedLauncherMain.java:42)
> Caused by:
> org.apache.uima.analysis_engine.annotator.AnnotatorContextException:
> EXCEPTION MESSAGE LOCALIZATION FAILED: java.util.MissingResourceException:
> Can't find resource for bundle java.util.PropertyResourceBundle, key Could
> not construct
> org.apache.ctakes.dictionary.lookup2.dictionary.UmlsJdbcRareWordDictionary
> at
> org.apache.ctakes.dictionary.lookup2.dictionary.
> DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser.
> java:199)
> at
> org.apache.ctakes.dictionary.lookup2.dictionary.
> DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser.
> java:156)
> at
> org.apache.ctakes.dictionary.lookup2.dictionary.
> DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.
> java:128)
> at
> org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.
> initialize(AbstractJCasTermAnnotator.java:129)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initialize(PrimitiveAnalysisEngine_impl.java:156)
> at
> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(
> AnalysisEngineFactory_impl.java:94)
> at
> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(
> CompositeResourceFactory_impl.java:62)
> at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
> at
> org.apache.uima.UIMAFramework.produceAnalysisEngine(
> UIMAFramework.java:387)
> at
> org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(
> AggregateAnalysisEngine_impl.java:431)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initialize(AggregateAnalysisEngine_impl.java:185)
> at
> org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(
> AnalysisEngineFactory.java:711)
> at
> org.apache.uima.fit.factory.AggregateBuilder.createAggregate(
> AggregateBuilder.java:207)
> at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
> at
> org.eclipse.jetty.servlet.ServletHolder.initServlet(
> ServletHolder.java:532)
> at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.servlet.ServletHandler.initialize(
> ServletHandler.java:791)
> at
> org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> ServletContextHandler.java:265)
> at
> org.eclipse.jetty.webapp.WebAppContext.startContext(
> WebAppContext.java:1242)
> at
> org.eclipse.jetty.server.handler.ContextHandler.
> doStart(ContextHandler.java:717)
> at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.server.handler.HandlerWrapper.
> doStart(HandlerWrapper.java:95)
> at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(
> JettyEmbeddedAdapter.java:67)
> at
> net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> launch(AbstractJettyLauncherMain.java:84)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> main(JettyEmbeddedLauncherMain.java:42)
> Caused by:
> java.lang.reflect.InvocationTargetException
> at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
> at sun.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source)
> at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown
> Source)
> at java.lang.reflect.Constructor.newInstance(Unknown Source)
> at
> org.apache.ctakes.dictionary.lookup2.dictionary.
> DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser.
> java:196)
> at
> org.apache.ctakes.dictionary.lookup2.dictionary.
> DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser.
> java:156)
> at
> org.apache.ctakes.dictionary.lookup2.dictionary.
> DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.
> java:128)
> at
> org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.
> initialize(AbstractJCasTermAnnotator.java:129)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initialize(PrimitiveAnalysisEngine_impl.java:156)
> at
> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(
> AnalysisEngineFactory_impl.java:94)
> at
> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(
> CompositeResourceFactory_impl.java:62)
> at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
> at
> org.apache.uima.UIMAFramework.produceAnalysisEngine(
> UIMAFramework.java:387)
> at
> org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(
> AggregateAnalysisEngine_impl.java:431)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initialize(AggregateAnalysisEngine_impl.java:185)
> at
> org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(
> AnalysisEngineFactory.java:711)
> at
> org.apache.uima.fit.factory.AggregateBuilder.createAggregate(
> AggregateBuilder.java:207)
> at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
> at
> org.eclipse.jetty.servlet.ServletHolder.initServlet(
> ServletHolder.java:532)
> at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.servlet.ServletHandler.initialize(
> ServletHandler.java:791)
> at
> org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> ServletContextHandler.java:265)
> at
> org.eclipse.jetty.webapp.WebAppContext.startContext(
> WebAppContext.java:1242)
> at
> org.eclipse.jetty.server.handler.ContextHandler.
> doStart(ContextHandler.java:717)
> at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.server.handler.HandlerWrapper.
> doStart(HandlerWrapper.java:95)
> at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(
> JettyEmbeddedAdapter.java:67)
> at
> net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> launch(AbstractJettyLauncherMain.java:84)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> main(JettyEmbeddedLauncherMain.java:42)
> Caused by:
> java.sql.SQLException: Invalid User for UMLS dictionary sno_rx_16abTerms
> at
> org.apache.ctakes.dictionary.lookup2.dictionary.
> UmlsJdbcRareWordDictionary.<init>(UmlsJdbcRareWordDictionary.java:29)
> at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
> at sun.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source)
> at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown
> Source)
> at java.lang.reflect.Constructor.newInstance(Unknown Source)
> at
> org.apache.ctakes.dictionary.lookup2.dictionary.
> DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser.
> java:196)
> at
> org.apache.ctakes.dictionary.lookup2.dictionary.
> DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser.
> java:156)
> at
> org.apache.ctakes.dictionary.lookup2.dictionary.
> DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.
> java:128)
> at
> org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.
> initialize(AbstractJCasTermAnnotator.java:129)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initialize(PrimitiveAnalysisEngine_impl.java:156)
> at
> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(
> AnalysisEngineFactory_impl.java:94)
> at
> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(
> CompositeResourceFactory_impl.java:62)
> at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
> at
> org.apache.uima.UIMAFramework.produceAnalysisEngine(
> UIMAFramework.java:387)
> at
> org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(
> AggregateAnalysisEngine_impl.java:431)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initialize(AggregateAnalysisEngine_impl.java:185)
> at
> org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(
> AnalysisEngineFactory.java:711)
> at
> org.apache.uima.fit.factory.AggregateBuilder.createAggregate(
> AggregateBuilder.java:207)
> at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
> at
> org.eclipse.jetty.servlet.ServletHolder.initServlet(
> ServletHolder.java:532)
> at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.servlet.ServletHandler.initialize(
> ServletHandler.java:791)
> at
> org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> ServletContextHandler.java:265)
> at
> org.eclipse.jetty.webapp.WebAppContext.startContext(
> WebAppContext.java:1242)
> at
> org.eclipse.jetty.server.handler.ContextHandler.
> doStart(ContextHandler.java:717)
> at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.server.handler.HandlerWrapper.
> doStart(HandlerWrapper.java:95)
> at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(
> JettyEmbeddedAdapter.java:67)
> at
> net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> launch(AbstractJettyLauncherMain.java:84)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> main(JettyEmbeddedLauncherMain.java:42)
> 2017-11-30 14:07:18.877:WARN:oejs.Holder:
> java.lang.ClassNotFoundException:
> com.sun.jersey.spi.container.servlet.ServletContainer
> at java.net.URLClassLoader.findClass(Unknown Source)
> at java.lang.ClassLoader.loadClass(Unknown Source)
> at sun.misc.Launcher$AppClassLoader.loadClass(Unknown Source)
> at java.lang.ClassLoader.loadClass(Unknown Source)
> at
> org.eclipse.jetty.webapp.WebAppClassLoader.loadClass(
> WebAppClassLoader.java:430)
> at
> org.eclipse.jetty.webapp.WebAppClassLoader.loadClass(
> WebAppClassLoader.java:383)
> at org.eclipse.jetty.util.Loader.loadClass(Loader.java:100)
> at org.eclipse.jetty.util.Loader.loadClass(Loader.java:79)
> at org.eclipse.jetty.servlet.Holder.doStart(Holder.java:107)
> at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:298)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.servlet.ServletHandler.initialize(
> ServletHandler.java:791)
> at
> org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> ServletContextHandler.java:265)
> at
> org.eclipse.jetty.webapp.WebAppContext.startContext(
> WebAppContext.java:1242)
> at
> org.eclipse.jetty.server.handler.ContextHandler.
> doStart(ContextHandler.java:717)
> at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.server.handler.HandlerWrapper.
> doStart(HandlerWrapper.java:95)
> at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(
> JettyEmbeddedAdapter.java:67)
> at
> net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> launch(AbstractJettyLauncherMain.java:84)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> main(JettyEmbeddedLauncherMain.java:42)
> 2017-11-30 14:07:18.878:WARN:/:unavailable
>
>
> regards,
> shyam k.
>
>
> On Thu, Nov 30, 2017 at 1:46 PM, Gandhi Rajan Natarajan <
> Gandhi.Natarajan@arisglobal.com> wrote:
>
> > Hey Sunder,
> >
> > Do you have the required files in your webapp resources folder?
> >
> > The below error shows the required files are missing:
> >
> > Caused by:
> > java.io.FileNotFoundException:
> > \org\apache\ctakes\temporal\ae\eventevent\20150630\model.jar (The system
> > cannot find the path specified) at java.io.FileInputStream.open0(Native
> > Method) at java.io.FileInputStream.open(Unknown Source) at
> > java.io.FileInputStream.<init>(Unknown Source) at
> > java.io.FileInputStream.<init>(Unknown Source)
> >
> > Check out this link - https://urldefense.proofpoint.
> com/v2/url?u=https-3A__github.com_healthnlp_&d=DwIBaQ&c=
> qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=
> fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=
> GMS7z6wXokcMqQHAUda8o3XxG1M868mv_PRYbKeB0Zc&s=
> FAcELWVkuvkQZ4udX6onvJRMJRvYTicJFd3MX0mO0YI&e=
> > examples/tree/master/ctakes-temporal-demo/src/main/resources
> >
> > Regards,
> > Gandhi
> >
> >
> > -----Original Message-----
> > From: Ks Sunder [mailto:shyam769@gmail.com]
> > Sent: Thursday, November 30, 2017 12:38 PM
> > To: dev@ctakes.apache.org
> > Subject: Re: Regarding cTakes version upadtion
> >
> > Thank you James,
> >
> > just i am using Maven dependencies and i created one pipline class in
> > that one AggregateBuilder for fastlookup,
> >
> > next i created one servlet for accessing AggregateBuilder.
> >
> > i did every thing .. But i am getting this Exception..
> >
> > ////////////////////////////////////////////////////////////
> //////////////
> >
> > log4j: Level value for root is [INFO].
> > log4j: root level set to INFO
> > log4j: Class name: [org.apache.log4j.ConsoleAppender]
> > log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
> > log4j: Setting property [conversionPattern] to [%d{dd MMM yyyy HH:mm:ss}
> > %5p %c{1} - %m%n].
> > log4j: Adding appender named [consoleAppender] to category [root].
> > 30 Nov 2017 12:27:02 INFO LvgAnnotator - URL for lvg.properties
> > =file:/C:/Users/NI3102/.m2/repository/net/sourceforge/
> > ctakesresources/ctakes-resources-lvg2008/4.0.0/
> > ctakes-resources-lvg2008-4.0.0.jar!/org/apache/ctakes/lvg/
> > data/config/lvg.properties
> > 2017-11-30 12:27:11.055:WARN:/:unavailable
> > org.apache.uima.resource.ResourceInitializationException: Initialization
> > of annotator class "org.apache.ctakes.temporal.ae.
> > EventEventRelationAnnotator"
> > failed. (Descriptor: <unknown>)
> > at
> > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> > initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:252)
> > at
> > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> > initialize(PrimitiveAnalysisEngine_impl.java:156)
> > at
> > org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(
> > AnalysisEngineFactory_impl.java:94)
> > at
> > org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(
> > CompositeResourceFactory_impl.java:62)
> > at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
> > at
> > org.apache.uima.UIMAFramework.produceAnalysisEngine(
> > UIMAFramework.java:387)
> > at
> > org.apache.uima.analysis_engine.asb.impl.ASB_impl.
> setup(ASB_impl.java:254)
> > at
> > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initASB(
> > AggregateAnalysisEngine_impl.java:431)
> > at
> > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> > initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
> > at
> > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> > initialize(AggregateAnalysisEngine_impl.java:185)
> > at
> > org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(
> > AnalysisEngineFactory.java:711)
> > at
> > org.apache.uima.fit.factory.AggregateBuilder.createAggregate(
> > AggregateBuilder.java:207)
> > at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
> > at
> > org.eclipse.jetty.servlet.ServletHolder.initServlet(
> > ServletHolder.java:532)
> > at org.eclipse.jetty.servlet.ServletHolder.doStart(
> ServletHolder.java:344)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > org.eclipse.jetty.servlet.ServletHandler.initialize(
> > ServletHandler.java:791)
> > at
> > org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> > ServletContextHandler.java:265)
> > at
> > org.eclipse.jetty.webapp.WebAppContext.startContext(
> > WebAppContext.java:1242)
> > at
> > org.eclipse.jetty.server.handler.ContextHandler.
> > doStart(ContextHandler.java:717)
> > at org.eclipse.jetty.webapp.WebAppContext.doStart(
> WebAppContext.java:494)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > org.eclipse.jetty.server.handler.HandlerWrapper.
> > doStart(HandlerWrapper.java:95)
> > at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > net.sourceforge.eclipsejetty.starter.embedded.
> JettyEmbeddedAdapter.start(
> > JettyEmbeddedAdapter.java:67)
> > at
> > net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> > launch(AbstractJettyLauncherMain.java:84)
> > at
> > net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> > main(JettyEmbeddedLauncherMain.java:42)
> > Caused by:
> > org.apache.uima.resource.ResourceInitializationException
> > at org.cleartk.ml.CleartkAnnotator.initialize(CleartkAnnotator.java:137)
> > at
> > org.apache.ctakes.temporal.ae.TemporalRelationExtractorAnnot
> > ator.initialize(TemporalRelationExtractorAnnotator.java:164)
> > at
> > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> > initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
> > at
> > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> > initialize(PrimitiveAnalysisEngine_impl.java:156)
> > at
> > org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(
> > AnalysisEngineFactory_impl.java:94)
> > at
> > org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(
> > CompositeResourceFactory_impl.java:62)
> > at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
> > at
> > org.apache.uima.UIMAFramework.produceAnalysisEngine(
> > UIMAFramework.java:387)
> > at
> > org.apache.uima.analysis_engine.asb.impl.ASB_impl.
> setup(ASB_impl.java:254)
> > at
> > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initASB(
> > AggregateAnalysisEngine_impl.java:431)
> > at
> > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> > initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
> > at
> > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> > initialize(AggregateAnalysisEngine_impl.java:185)
> > at
> > org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(
> > AnalysisEngineFactory.java:711)
> > at
> > org.apache.uima.fit.factory.AggregateBuilder.createAggregate(
> > AggregateBuilder.java:207)
> > at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
> > at
> > org.eclipse.jetty.servlet.ServletHolder.initServlet(
> > ServletHolder.java:532)
> > at org.eclipse.jetty.servlet.ServletHolder.doStart(
> ServletHolder.java:344)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > org.eclipse.jetty.servlet.ServletHandler.initialize(
> > ServletHandler.java:791)
> > at
> > org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> > ServletContextHandler.java:265)
> > at
> > org.eclipse.jetty.webapp.WebAppContext.startContext(
> > WebAppContext.java:1242)
> > at
> > org.eclipse.jetty.server.handler.ContextHandler.
> > doStart(ContextHandler.java:717)
> > at org.eclipse.jetty.webapp.WebAppContext.doStart(
> WebAppContext.java:494)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > org.eclipse.jetty.server.handler.HandlerWrapper.
> > doStart(HandlerWrapper.java:95)
> > at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > net.sourceforge.eclipsejetty.starter.embedded.
> JettyEmbeddedAdapter.start(
> > JettyEmbeddedAdapter.java:67)
> > at
> > net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> > launch(AbstractJettyLauncherMain.java:84)
> > at
> > net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> > main(JettyEmbeddedLauncherMain.java:42)
> > Caused by:
> > java.io.FileNotFoundException:
> > \org\apache\ctakes\temporal\ae\eventevent\20150630\model.jar (The system
> > cannot find the path specified) at java.io.FileInputStream.open0(Native
> > Method) at java.io.FileInputStream.open(Unknown Source) at
> > java.io.FileInputStream.<init>(Unknown Source) at
> > java.io.FileInputStream.<init>(Unknown Source) at
> > org.cleartk.ml.jar.GenericJarClassifierFactory.createClassifier(
> > GenericJarClassifierFactory.java:69)
> > at
> > org.cleartk.ml.jar.JarClassifierFactory.createClassifier(
> > JarClassifierFactory.java:35)
> > at org.cleartk.ml.CleartkAnnotator.initialize(CleartkAnnotator.java:135)
> > at
> > org.apache.ctakes.temporal.ae.TemporalRelationExtractorAnnot
> > ator.initialize(TemporalRelationExtractorAnnotator.java:164)
> > at
> > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> > initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
> > at
> > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> > initialize(PrimitiveAnalysisEngine_impl.java:156)
> > at
> > org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(
> > AnalysisEngineFactory_impl.java:94)
> > at
> > org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(
> > CompositeResourceFactory_impl.java:62)
> > at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
> > at
> > org.apache.uima.UIMAFramework.produceAnalysisEngine(
> > UIMAFramework.java:387)
> > at
> > org.apache.uima.analysis_engine.asb.impl.ASB_impl.
> setup(ASB_impl.java:254)
> > at
> > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initASB(
> > AggregateAnalysisEngine_impl.java:431)
> > at
> > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> > initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
> > at
> > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> > initialize(AggregateAnalysisEngine_impl.java:185)
> > at
> > org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(
> > AnalysisEngineFactory.java:711)
> > at
> > org.apache.uima.fit.factory.AggregateBuilder.createAggregate(
> > AggregateBuilder.java:207)
> > at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
> > at
> > org.eclipse.jetty.servlet.ServletHolder.initServlet(
> > ServletHolder.java:532)
> > at org.eclipse.jetty.servlet.ServletHolder.doStart(
> ServletHolder.java:344)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > org.eclipse.jetty.servlet.ServletHandler.initialize(
> > ServletHandler.java:791)
> > at
> > org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> > ServletContextHandler.java:265)
> > at
> > org.eclipse.jetty.webapp.WebAppContext.startContext(
> > WebAppContext.java:1242)
> > at
> > org.eclipse.jetty.server.handler.ContextHandler.
> > doStart(ContextHandler.java:717)
> > at org.eclipse.jetty.webapp.WebAppContext.doStart(
> WebAppContext.java:494)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > org.eclipse.jetty.server.handler.HandlerWrapper.
> > doStart(HandlerWrapper.java:95)
> > at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > net.sourceforge.eclipsejetty.starter.embedded.
> JettyEmbeddedAdapter.start(
> > JettyEmbeddedAdapter.java:67)
> > at
> > net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> > launch(AbstractJettyLauncherMain.java:84)
> > at
> > net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> > main(JettyEmbeddedLauncherMain.java:42)
> > 2017-11-30 12:27:11.058:WARN:oejuc.AbstractLifeCycle:FAILED
> > cTakesWebClass:
> > javax.servlet.ServletException:
> > org.apache.uima.resource.ResourceInitializationException: Initialization
> > of annotator class "org.apache.ctakes.temporal.ae.
> > EventEventRelationAnnotator"
> > failed. (Descriptor: <unknown>)
> > javax.servlet.ServletException:
> > org.apache.uima.resource.ResourceInitializationException: Initialization
> > of annotator class "org.apache.ctakes.temporal.ae.
> > EventEventRelationAnnotator"
> > failed. (Descriptor: <unknown>)
> > at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:38)
> > at
> > org.eclipse.jetty.servlet.ServletHolder.initServlet(
> > ServletHolder.java:532)
> > at org.eclipse.jetty.servlet.ServletHolder.doStart(
> ServletHolder.java:344)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > org.eclipse.jetty.servlet.ServletHandler.initialize(
> > ServletHandler.java:791)
> > at
> > org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> > ServletContextHandler.java:265)
> > at
> > org.eclipse.jetty.webapp.WebAppContext.startContext(
> > WebAppContext.java:1242)
> > at
> > org.eclipse.jetty.server.handler.ContextHandler.
> > doStart(ContextHandler.java:717)
> > at org.eclipse.jetty.webapp.WebAppContext.doStart(
> WebAppContext.java:494)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > org.eclipse.jetty.server.handler.HandlerWrapper.
> > doStart(HandlerWrapper.java:95)
> > at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > net.sourceforge.eclipsejetty.starter.embedded.
> JettyEmbeddedAdapter.start(
> > JettyEmbeddedAdapter.java:67)
> > at
> > net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> > launch(AbstractJettyLauncherMain.java:84)
> > at
> > net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> > main(JettyEmbeddedLauncherMain.java:42)
> > Caused by:
> > org.apache.uima.resource.ResourceInitializationException: Initialization
> > of annotator class "org.apache.ctakes.temporal.ae.
> > EventEventRelationAnnotator"
> > failed. (Descriptor: <unknown>)
> > at
> > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> > initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:252)
> > at
> > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> > initialize(PrimitiveAnalysisEngine_impl.java:156)
> > at
> > org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(
> > AnalysisEngineFactory_impl.java:94)
> > at
> > org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(
> > CompositeResourceFactory_impl.java:62)
> > at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
> > at
> > org.apache.uima.UIMAFramework.produceAnalysisEngine(
> > UIMAFramework.java:387)
> > at
> > org.apache.uima.analysis_engine.asb.impl.ASB_impl.
> setup(ASB_impl.java:254)
> > at
> > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initASB(
> > AggregateAnalysisEngine_impl.java:431)
> > at
> > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> > initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
> > at
> > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> > initialize(AggregateAnalysisEngine_impl.java:185)
> > at
> > org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(
> > AnalysisEngineFactory.java:711)
> > at
> > org.apache.uima.fit.factory.AggregateBuilder.createAggregate(
> > AggregateBuilder.java:207)
> > at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
> > at
> > org.eclipse.jetty.servlet.ServletHolder.initServlet(
> > ServletHolder.java:532)
> > at org.eclipse.jetty.servlet.ServletHolder.doStart(
> ServletHolder.java:344)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > org.eclipse.jetty.servlet.ServletHandler.initialize(
> > ServletHandler.java:791)
> > at
> > org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> > ServletContextHandler.java:265)
> > at
> > org.eclipse.jetty.webapp.WebAppContext.startContext(
> > WebAppContext.java:1242)
> > at
> > org.eclipse.jetty.server.handler.ContextHandler.
> > doStart(ContextHandler.java:717)
> > at org.eclipse.jetty.webapp.WebAppContext.doStart(
> WebAppContext.java:494)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > org.eclipse.jetty.server.handler.HandlerWrapper.
> > doStart(HandlerWrapper.java:95)
> > at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > net.sourceforge.eclipsejetty.starter.embedded.
> JettyEmbeddedAdapter.start(
> > JettyEmbeddedAdapter.java:67)
> > at
> > net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> > launch(AbstractJettyLauncherMain.java:84)
> > at
> > net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> > main(JettyEmbeddedLauncherMain.java:42)
> > Caused by:
> > org.apache.uima.resource.ResourceInitializationException
> > at org.cleartk.ml.CleartkAnnotator.initialize(CleartkAnnotator.java:137)
> > at
> > org.apache.ctakes.temporal.ae.TemporalRelationExtractorAnnot
> > ator.initialize(TemporalRelationExtractorAnnotator.java:164)
> > at
> > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> > initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
> > at
> > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> > initialize(PrimitiveAnalysisEngine_impl.java:156)
> > at
> > org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(
> > AnalysisEngineFactory_impl.java:94)
> > at
> > org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(
> > CompositeResourceFactory_impl.java:62)
> > at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
> > at
> > org.apache.uima.UIMAFramework.produceAnalysisEngine(
> > UIMAFramework.java:387)
> > at
> > org.apache.uima.analysis_engine.asb.impl.ASB_impl.
> setup(ASB_impl.java:254)
> > at
> > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initASB(
> > AggregateAnalysisEngine_impl.java:431)
> > at
> > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> > initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
> > at
> > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> > initialize(AggregateAnalysisEngine_impl.java:185)
> > at
> > org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(
> > AnalysisEngineFactory.java:711)
> > at
> > org.apache.uima.fit.factory.AggregateBuilder.createAggregate(
> > AggregateBuilder.java:207)
> > at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
> > at
> > org.eclipse.jetty.servlet.ServletHolder.initServlet(
> > ServletHolder.java:532)
> > at org.eclipse.jetty.servlet.ServletHolder.doStart(
> ServletHolder.java:344)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > org.eclipse.jetty.servlet.ServletHandler.initialize(
> > ServletHandler.java:791)
> > at
> > org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> > ServletContextHandler.java:265)
> > at
> > org.eclipse.jetty.webapp.WebAppContext.startContext(
> > WebAppContext.java:1242)
> > at
> > org.eclipse.jetty.server.handler.ContextHandler.
> > doStart(ContextHandler.java:717)
> > at org.eclipse.jetty.webapp.WebAppContext.doStart(
> WebAppContext.java:494)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > org.eclipse.jetty.server.handler.HandlerWrapper.
> > doStart(HandlerWrapper.java:95)
> > at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > net.sourceforge.eclipsejetty.starter.embedded.
> JettyEmbeddedAdapter.start(
> > JettyEmbeddedAdapter.java:67)
> > at
> > net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> > launch(AbstractJettyLauncherMain.java:84)
> > at
> > net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> > main(JettyEmbeddedLauncherMain.java:42)
> > Caused by:
> > java.io.FileNotFoundException:
> > \org\apache\ctakes\temporal\ae\eventevent\20150630\model.jar (The system
> > cannot find the path specified) at java.io.FileInputStream.open0(Native
> > Method) at java.io.FileInputStream.open(Unknown Source) at
> > java.io.FileInputStream.<init>(Unknown Source) at
> > java.io.FileInputStream.<init>(Unknown Source) at
> > org.cleartk.ml.jar.GenericJarClassifierFactory.createClassifier(
> > GenericJarClassifierFactory.java:69)
> > at
> > org.cleartk.ml.jar.JarClassifierFactory.createClassifier(
> > JarClassifierFactory.java:35)
> > at org.cleartk.ml.CleartkAnnotator.initialize(CleartkAnnotator.java:135)
> > at
> > org.apache.ctakes.temporal.ae.TemporalRelationExtractorAnnot
> > ator.initialize(TemporalRelationExtractorAnnotator.java:164)
> > at
> > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> > initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
> > at
> > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> > initialize(PrimitiveAnalysisEngine_impl.java:156)
> > at
> > org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(
> > AnalysisEngineFactory_impl.java:94)
> > at
> > org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(
> > CompositeResourceFactory_impl.java:62)
> > at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
> > at
> > org.apache.uima.UIMAFramework.produceAnalysisEngine(
> > UIMAFramework.java:387)
> > at
> > org.apache.uima.analysis_engine.asb.impl.ASB_impl.
> setup(ASB_impl.java:254)
> > at
> > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initASB(
> > AggregateAnalysisEngine_impl.java:431)
> > at
> > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> > initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
> > at
> > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> > initialize(AggregateAnalysisEngine_impl.java:185)
> > at
> > org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(
> > AnalysisEngineFactory.java:711)
> > at
> > org.apache.uima.fit.factory.AggregateBuilder.createAggregate(
> > AggregateBuilder.java:207)
> > at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
> > at
> > org.eclipse.jetty.servlet.ServletHolder.initServlet(
> > ServletHolder.java:532)
> > at org.eclipse.jetty.servlet.ServletHolder.doStart(
> ServletHolder.java:344)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > org.eclipse.jetty.servlet.ServletHandler.initialize(
> > ServletHandler.java:791)
> > at
> > org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> > ServletContextHandler.java:265)
> > at
> > org.eclipse.jetty.webapp.WebAppContext.startContext(
> > WebAppContext.java:1242)
> > at
> > org.eclipse.jetty.server.handler.ContextHandler.
> > doStart(ContextHandler.java:717)
> > at org.eclipse.jetty.webapp.WebAppContext.doStart(
> WebAppContext.java:494)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > org.eclipse.jetty.server.handler.HandlerWrapper.
> > doStart(HandlerWrapper.java:95)
> > at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > net.sourceforge.eclipsejetty.starter.embedded.
> JettyEmbeddedAdapter.start(
> > JettyEmbeddedAdapter.java:67)
> > at
> > net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> > launch(AbstractJettyLauncherMain.java:84)
> > at
> > net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> > main(JettyEmbeddedLauncherMain.java:42)
> > 2017-11-30 12:27:11.066:WARN:oejs.Holder:
> > java.lang.ClassNotFoundException:
> > com.sun.jersey.spi.container.servlet.ServletContainer
> > at java.net.URLClassLoader.findClass(Unknown Source) at
> > java.lang.ClassLoader.loadClass(Unknown Source) at sun.misc.Launcher$
> > AppClassLoader.loadClass(Unknown Source) at java.lang.ClassLoader.
> loadClass(Unknown
> > Source) at
> > org.eclipse.jetty.webapp.WebAppClassLoader.loadClass(
> > WebAppClassLoader.java:430)
> > at
> > org.eclipse.jetty.webapp.WebAppClassLoader.loadClass(
> > WebAppClassLoader.java:383)
> > at org.eclipse.jetty.util.Loader.loadClass(Loader.java:100)
> > at org.eclipse.jetty.util.Loader.loadClass(Loader.java:79)
> > at org.eclipse.jetty.servlet.Holder.doStart(Holder.java:107)
> > at org.eclipse.jetty.servlet.ServletHolder.doStart(
> ServletHolder.java:298)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > org.eclipse.jetty.servlet.ServletHandler.initialize(
> > ServletHandler.java:791)
> > at
> > org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> > ServletContextHandler.java:265)
> > at
> > org.eclipse.jetty.webapp.WebAppContext.startContext(
> > WebAppContext.java:1242)
> > at
> > org.eclipse.jetty.server.handler.ContextHandler.
> > doStart(ContextHandler.java:717)
> > at org.eclipse.jetty.webapp.WebAppContext.doStart(
> WebAppContext.java:494)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > org.eclipse.jetty.server.handler.HandlerWrapper.
> > doStart(HandlerWrapper.java:95)
> > at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > net.sourceforge.eclipsejetty.starter.embedded.
> JettyEmbeddedAdapter.start(
> > JettyEmbeddedAdapter.java:67)
> > at
> > net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> > launch(AbstractJettyLauncherMain.java:84)
> > at
> > net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> > main(JettyEmbeddedLauncherMain.java:42)
> > 2017-11-30 12:27:11.066:WARN:/:unavailable
> > javax.servlet.UnavailableException:
> > com.sun.jersey.spi.container.servlet.ServletContainer
> > at org.eclipse.jetty.servlet.Holder.doStart(Holder.java:114)
> > at org.eclipse.jetty.servlet.ServletHolder.doStart(
> ServletHolder.java:298)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > org.eclipse.jetty.servlet.ServletHandler.initialize(
> > ServletHandler.java:791)
> > at
> > org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> > ServletContextHandler.java:265)
> > at
> > org.eclipse.jetty.webapp.WebAppContext.startContext(
> > WebAppContext.java:1242)
> > at
> > org.eclipse.jetty.server.handler.ContextHandler.
> > doStart(ContextHandler.java:717)
> > at org.eclipse.jetty.webapp.WebAppContext.doStart(
> WebAppContext.java:494)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > org.eclipse.jetty.server.handler.HandlerWrapper.
> > doStart(HandlerWrapper.java:95)
> > at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > net.sourceforge.eclipsejetty.starter.embedded.
> JettyEmbeddedAdapter.start(
> > JettyEmbeddedAdapter.java:67)
> > at
> > net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> > launch(AbstractJettyLauncherMain.java:84)
> > at
> > net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> > main(JettyEmbeddedLauncherMain.java:42)
> > 2017-11-30 12:27:11.066:WARN:oejuc.AbstractLifeCycle:FAILED Jersey
> RESTful
> > Application: javax.servlet.UnavailableException:
> > com.sun.jersey.spi.container.servlet.ServletContainer
> > javax.servlet.UnavailableException:
> > com.sun.jersey.spi.container.servlet.ServletContainer
> > at org.eclipse.jetty.servlet.Holder.doStart(Holder.java:114)
> > at org.eclipse.jetty.servlet.ServletHolder.doStart(
> ServletHolder.java:298)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > org.eclipse.jetty.servlet.ServletHandler.initialize(
> > ServletHandler.java:791)
> > at
> > org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> > ServletContextHandler.java:265)
> > at
> > org.eclipse.jetty.webapp.WebAppContext.startContext(
> > WebAppContext.java:1242)
> > at
> > org.eclipse.jetty.server.handler.ContextHandler.
> > doStart(ContextHandler.java:717)
> > at org.eclipse.jetty.webapp.WebAppContext.doStart(
> WebAppContext.java:494)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > org.eclipse.jetty.server.handler.HandlerWrapper.
> > doStart(HandlerWrapper.java:95)
> > at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > net.sourceforge.eclipsejetty.starter.embedded.
> JettyEmbeddedAdapter.start(
> > JettyEmbeddedAdapter.java:67)
> > at
> > net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> > launch(AbstractJettyLauncherMain.java:84)
> > at
> > net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> > main(JettyEmbeddedLauncherMain.java:42)
> > 2017-11-30 12:27:11.067:WARN:oejw.WebAppContext:Failed startup of
> context
> > o.e.j.w.WebAppContext{/,file:/E:/cTakesLive/cTakes4.0/
> > WebContent/},E:\cTakesLive\cTakes4.0\WebContent
> > MultiException[javax.servlet.ServletException:
> > org.apache.uima.resource.ResourceInitializationException: Initialization
> > of annotator class "org.apache.ctakes.temporal.ae.
> > EventEventRelationAnnotator"
> > failed. (Descriptor: <unknown>), javax.servlet.UnavailableException:
> > com.sun.jersey.spi.container.servlet.ServletContainer]
> > at
> > org.eclipse.jetty.servlet.ServletHandler.initialize(
> > ServletHandler.java:762)
> > at
> > org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> > ServletContextHandler.java:265)
> > at
> > org.eclipse.jetty.webapp.WebAppContext.startContext(
> > WebAppContext.java:1242)
> > at
> > org.eclipse.jetty.server.handler.ContextHandler.
> > doStart(ContextHandler.java:717)
> > at org.eclipse.jetty.webapp.WebAppContext.doStart(
> WebAppContext.java:494)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > org.eclipse.jetty.server.handler.HandlerWrapper.
> > doStart(HandlerWrapper.java:95)
> > at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> > at
> > org.eclipse.jetty.util.component.AbstractLifeCycle.
> > start(AbstractLifeCycle.java:64)
> > at
> > net.sourceforge.eclipsejetty.starter.embedded.
> JettyEmbeddedAdapter.start(
> > JettyEmbeddedAdapter.java:67)
> > at
> > net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> > launch(AbstractJettyLauncherMain.java:84)
> > at
> > net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> > main(JettyEmbeddedLauncherMain.java:42)
> > 2017-11-30 12:27:11.150:INFO:oejs.AbstractConnector:Started
> > SelectChannelConnector@0.0.0.0:8080
> >
> >
> > /////////////////////////////////////////////////////////////////
> >
> > How can I solve this please help me.
> >
> > regards,
> > shyam k.
> >
> > On Thu, Nov 30, 2017 at 1:59 AM, James Masanz <ma...@gmail.com>
> > wrote:
> >
> > > First, take a look at changes that might affect you, listed on the
> > > Wiki
> > > here:
> > >
> > > https://urldefense.proofpoint.com/v2/url?u=https-3A__cwiki.
> apache.org_confluence_display_CTAKES_New-2B&d=DwIBaQ&c=qS4goWBT7poplM69zy_
> 3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=
> GMS7z6wXokcMqQHAUda8o3XxG1M868mv_PRYbKeB0Zc&s=
> uosucKTceY1WhBHP6_cDURFltyO-A-O8mm603JhoYQs&e=
> > > for+4.0#Newfor4.0-Changes
> > >
> > > I think in order to answer well, I'd need an explanation of how you
> > > are using cTAKES now - just as maven dependencies? Or do you install
> > > from a .tar.gz (or .zip)? Or do you check out the code from SVN?
> > > Have you made modifications to cTAKES itself?
> > >
> > >
> > >
> > > On Wed, Nov 29, 2017 at 10:26 AM, Ks Sunder <sh...@gmail.com>
> wrote:
> > >
> > > > Hi,
> > > >
> > > >
> > > > What are the steps need to change ctakes 3.x version to ctakes 4
> > > > version
> > > ,
> > > > and can I change maven dependency..?
> > > >
> > > > Please help me.
> > > >
> > > > Regards,
> > > > Shyam k.
> > > >
> > >
> > This email and any files transmitted with it are confidential and
> intended
> > solely for the use of the individual or entity to whom they are
> addressed.
> > If you are not the named addressee you should not disseminate, distribute
> > or copy this e-mail. Please notify the sender or system manager by email
> > immediately if you have received this e-mail by mistake and delete this
> > e-mail from your system. If you are not the intended recipient you are
> > notified that disclosing, copying, distributing or taking any action in
> > reliance on the contents of this information is strictly prohibited and
> > against the law.
> >
>
RE: Regarding cTakes version upadtion [EXTERNAL]
Posted by "Finan, Sean" <Se...@childrens.harvard.edu>.
Hi Shyam k,
Are you sure that you changed your umls credentials? How did you change them? It doesn't look like your change went through since your error is still:
> is not valid for user CHANGE_ME with CHANGE_ME
Sean
-----Original Message-----
From: Ks Sunder [mailto:shyam769@gmail.com]
Sent: Thursday, November 30, 2017 3:41 AM
To: dev@ctakes.apache.org
Subject: Re: Regarding cTakes version upadtion [EXTERNAL]
Hi,
I commented in Pipeline :
\org\apache\ctakes\temporal\ae\eventevent\20150630\model.jar
stitll i am getting this error : UMLS Account at
https://urldefense.proofpoint.com/v2/url?u=https-3A__uts-2Dws.nlm.nih.gov_restful_isValidUMLSUser&d=DwIBaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=GMS7z6wXokcMqQHAUda8o3XxG1M868mv_PRYbKeB0Zc&s=le1pEnmgizyhdYQnzNGbDFgXFy53cl2Jj51E-IjkQck&e= is not valid for user
CHANGE_ME with CHANGE_ME ,
I changed UMLusername and password its notworking, but cTakes 3.x is
working properly through current Uml credentials,
we need any other credential for cTakes4.0...?
Error////////////////////////////////////////////////////////
30 Nov 2017 14:07:16 INFO DictionaryDescriptorParser - Parsing dictionary
specifications:
30 Nov 2017 14:07:16 INFO UmlsUserApprover - Checking UMLS Account at
https://urldefense.proofpoint.com/v2/url?u=https-3A__uts-2Dws.nlm.nih.gov_restful_isValidUMLSUser&d=DwIBaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=GMS7z6wXokcMqQHAUda8o3XxG1M868mv_PRYbKeB0Zc&s=le1pEnmgizyhdYQnzNGbDFgXFy53cl2Jj51E-IjkQck&e= for user CHANGE_ME:
........30 Nov 2017 14:07:18 ERROR UmlsUserApprover - UMLS Account at
https://urldefense.proofpoint.com/v2/url?u=https-3A__uts-2Dws.nlm.nih.gov_restful_isValidUMLSUser&d=DwIBaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=GMS7z6wXokcMqQHAUda8o3XxG1M868mv_PRYbKeB0Zc&s=le1pEnmgizyhdYQnzNGbDFgXFy53cl2Jj51E-IjkQck&e= is not valid for user
CHANGE_ME with CHANGE_ME
2017-11-30 14:07:18.867:WARN:/:unavailable
org.apache.uima.resource.ResourceInitializationException: Initialization of
annotator class
"org.apache.ctakes.dictionary.lookup2.ae.DefaultJCasTermAnnotator" failed.
(Descriptor: <unknown>)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:252)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at
org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at
org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at
org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at
org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
at
org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
org.apache.uima.resource.ResourceInitializationException: EXCEPTION MESSAGE
LOCALIZATION FAILED: java.util.MissingResourceException: Can't find
resource for bundle java.util.PropertyResourceBundle, key Could not
construct
org.apache.ctakes.dictionary.lookup2.dictionary.UmlsJdbcRareWordDictionary
at
org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:131)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at
org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at
org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at
org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at
org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
at
org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
org.apache.uima.analysis_engine.annotator.AnnotatorContextException:
EXCEPTION MESSAGE LOCALIZATION FAILED: java.util.MissingResourceException:
Can't find resource for bundle java.util.PropertyResourceBundle, key Could
not construct
org.apache.ctakes.dictionary.lookup2.dictionary.UmlsJdbcRareWordDictionary
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser.java:199)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser.java:156)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.java:128)
at
org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:129)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at
org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at
org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at
org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at
org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
at
org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
java.lang.reflect.InvocationTargetException
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source)
at java.lang.reflect.Constructor.newInstance(Unknown Source)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser.java:196)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser.java:156)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.java:128)
at
org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:129)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at
org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at
org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at
org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at
org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
at
org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
java.sql.SQLException: Invalid User for UMLS dictionary sno_rx_16abTerms
at
org.apache.ctakes.dictionary.lookup2.dictionary.UmlsJdbcRareWordDictionary.<init>(UmlsJdbcRareWordDictionary.java:29)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source)
at java.lang.reflect.Constructor.newInstance(Unknown Source)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser.java:196)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser.java:156)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.java:128)
at
org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:129)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at
org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at
org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at
org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at
org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
at
org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
2017-11-30 14:07:18.872:WARN:oejuc.AbstractLifeCycle:FAILED cTakesWebClass:
javax.servlet.ServletException:
org.apache.uima.resource.ResourceInitializationException: Initialization of
annotator class
"org.apache.ctakes.dictionary.lookup2.ae.DefaultJCasTermAnnotator" failed.
(Descriptor: <unknown>)
javax.servlet.ServletException:
org.apache.uima.resource.ResourceInitializationException: Initialization of
annotator class
"org.apache.ctakes.dictionary.lookup2.ae.DefaultJCasTermAnnotator" failed.
(Descriptor: <unknown>)
at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:38)
at
org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
org.apache.uima.resource.ResourceInitializationException: Initialization of
annotator class
"org.apache.ctakes.dictionary.lookup2.ae.DefaultJCasTermAnnotator" failed.
(Descriptor: <unknown>)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:252)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at
org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at
org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at
org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at
org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
at
org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
org.apache.uima.resource.ResourceInitializationException: EXCEPTION MESSAGE
LOCALIZATION FAILED: java.util.MissingResourceException: Can't find
resource for bundle java.util.PropertyResourceBundle, key Could not
construct
org.apache.ctakes.dictionary.lookup2.dictionary.UmlsJdbcRareWordDictionary
at
org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:131)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at
org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at
org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at
org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at
org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
at
org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
org.apache.uima.analysis_engine.annotator.AnnotatorContextException:
EXCEPTION MESSAGE LOCALIZATION FAILED: java.util.MissingResourceException:
Can't find resource for bundle java.util.PropertyResourceBundle, key Could
not construct
org.apache.ctakes.dictionary.lookup2.dictionary.UmlsJdbcRareWordDictionary
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser.java:199)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser.java:156)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.java:128)
at
org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:129)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at
org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at
org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at
org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at
org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
at
org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
java.lang.reflect.InvocationTargetException
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source)
at java.lang.reflect.Constructor.newInstance(Unknown Source)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser.java:196)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser.java:156)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.java:128)
at
org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:129)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at
org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at
org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at
org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at
org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
at
org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
java.sql.SQLException: Invalid User for UMLS dictionary sno_rx_16abTerms
at
org.apache.ctakes.dictionary.lookup2.dictionary.UmlsJdbcRareWordDictionary.<init>(UmlsJdbcRareWordDictionary.java:29)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source)
at java.lang.reflect.Constructor.newInstance(Unknown Source)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser.java:196)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser.java:156)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.java:128)
at
org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:129)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at
org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at
org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at
org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at
org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
at
org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
2017-11-30 14:07:18.877:WARN:oejs.Holder:
java.lang.ClassNotFoundException:
com.sun.jersey.spi.container.servlet.ServletContainer
at java.net.URLClassLoader.findClass(Unknown Source)
at java.lang.ClassLoader.loadClass(Unknown Source)
at sun.misc.Launcher$AppClassLoader.loadClass(Unknown Source)
at java.lang.ClassLoader.loadClass(Unknown Source)
at
org.eclipse.jetty.webapp.WebAppClassLoader.loadClass(WebAppClassLoader.java:430)
at
org.eclipse.jetty.webapp.WebAppClassLoader.loadClass(WebAppClassLoader.java:383)
at org.eclipse.jetty.util.Loader.loadClass(Loader.java:100)
at org.eclipse.jetty.util.Loader.loadClass(Loader.java:79)
at org.eclipse.jetty.servlet.Holder.doStart(Holder.java:107)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:298)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
2017-11-30 14:07:18.878:WARN:/:unavailable
regards,
shyam k.
On Thu, Nov 30, 2017 at 1:46 PM, Gandhi Rajan Natarajan <
Gandhi.Natarajan@arisglobal.com> wrote:
> Hey Sunder,
>
> Do you have the required files in your webapp resources folder?
>
> The below error shows the required files are missing:
>
> Caused by:
> java.io.FileNotFoundException:
> \org\apache\ctakes\temporal\ae\eventevent\20150630\model.jar (The system
> cannot find the path specified) at java.io.FileInputStream.open0(Native
> Method) at java.io.FileInputStream.open(Unknown Source) at
> java.io.FileInputStream.<init>(Unknown Source) at
> java.io.FileInputStream.<init>(Unknown Source)
>
> Check out this link - https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_healthnlp_&d=DwIBaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=GMS7z6wXokcMqQHAUda8o3XxG1M868mv_PRYbKeB0Zc&s=FAcELWVkuvkQZ4udX6onvJRMJRvYTicJFd3MX0mO0YI&e=
> examples/tree/master/ctakes-temporal-demo/src/main/resources
>
> Regards,
> Gandhi
>
>
> -----Original Message-----
> From: Ks Sunder [mailto:shyam769@gmail.com]
> Sent: Thursday, November 30, 2017 12:38 PM
> To: dev@ctakes.apache.org
> Subject: Re: Regarding cTakes version upadtion
>
> Thank you James,
>
> just i am using Maven dependencies and i created one pipline class in
> that one AggregateBuilder for fastlookup,
>
> next i created one servlet for accessing AggregateBuilder.
>
> i did every thing .. But i am getting this Exception..
>
> //////////////////////////////////////////////////////////////////////////
>
> log4j: Level value for root is [INFO].
> log4j: root level set to INFO
> log4j: Class name: [org.apache.log4j.ConsoleAppender]
> log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
> log4j: Setting property [conversionPattern] to [%d{dd MMM yyyy HH:mm:ss}
> %5p %c{1} - %m%n].
> log4j: Adding appender named [consoleAppender] to category [root].
> 30 Nov 2017 12:27:02 INFO LvgAnnotator - URL for lvg.properties
> =file:/C:/Users/NI3102/.m2/repository/net/sourceforge/
> ctakesresources/ctakes-resources-lvg2008/4.0.0/
> ctakes-resources-lvg2008-4.0.0.jar!/org/apache/ctakes/lvg/
> data/config/lvg.properties
> 2017-11-30 12:27:11.055:WARN:/:unavailable
> org.apache.uima.resource.ResourceInitializationException: Initialization
> of annotator class "org.apache.ctakes.temporal.ae.
> EventEventRelationAnnotator"
> failed. (Descriptor: <unknown>)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:252)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initialize(PrimitiveAnalysisEngine_impl.java:156)
> at
> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(
> AnalysisEngineFactory_impl.java:94)
> at
> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(
> CompositeResourceFactory_impl.java:62)
> at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
> at
> org.apache.uima.UIMAFramework.produceAnalysisEngine(
> UIMAFramework.java:387)
> at
> org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(
> AggregateAnalysisEngine_impl.java:431)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initialize(AggregateAnalysisEngine_impl.java:185)
> at
> org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(
> AnalysisEngineFactory.java:711)
> at
> org.apache.uima.fit.factory.AggregateBuilder.createAggregate(
> AggregateBuilder.java:207)
> at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
> at
> org.eclipse.jetty.servlet.ServletHolder.initServlet(
> ServletHolder.java:532)
> at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.servlet.ServletHandler.initialize(
> ServletHandler.java:791)
> at
> org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> ServletContextHandler.java:265)
> at
> org.eclipse.jetty.webapp.WebAppContext.startContext(
> WebAppContext.java:1242)
> at
> org.eclipse.jetty.server.handler.ContextHandler.
> doStart(ContextHandler.java:717)
> at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.server.handler.HandlerWrapper.
> doStart(HandlerWrapper.java:95)
> at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(
> JettyEmbeddedAdapter.java:67)
> at
> net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> launch(AbstractJettyLauncherMain.java:84)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> main(JettyEmbeddedLauncherMain.java:42)
> Caused by:
> org.apache.uima.resource.ResourceInitializationException
> at org.cleartk.ml.CleartkAnnotator.initialize(CleartkAnnotator.java:137)
> at
> org.apache.ctakes.temporal.ae.TemporalRelationExtractorAnnot
> ator.initialize(TemporalRelationExtractorAnnotator.java:164)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initialize(PrimitiveAnalysisEngine_impl.java:156)
> at
> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(
> AnalysisEngineFactory_impl.java:94)
> at
> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(
> CompositeResourceFactory_impl.java:62)
> at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
> at
> org.apache.uima.UIMAFramework.produceAnalysisEngine(
> UIMAFramework.java:387)
> at
> org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(
> AggregateAnalysisEngine_impl.java:431)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initialize(AggregateAnalysisEngine_impl.java:185)
> at
> org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(
> AnalysisEngineFactory.java:711)
> at
> org.apache.uima.fit.factory.AggregateBuilder.createAggregate(
> AggregateBuilder.java:207)
> at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
> at
> org.eclipse.jetty.servlet.ServletHolder.initServlet(
> ServletHolder.java:532)
> at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.servlet.ServletHandler.initialize(
> ServletHandler.java:791)
> at
> org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> ServletContextHandler.java:265)
> at
> org.eclipse.jetty.webapp.WebAppContext.startContext(
> WebAppContext.java:1242)
> at
> org.eclipse.jetty.server.handler.ContextHandler.
> doStart(ContextHandler.java:717)
> at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.server.handler.HandlerWrapper.
> doStart(HandlerWrapper.java:95)
> at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(
> JettyEmbeddedAdapter.java:67)
> at
> net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> launch(AbstractJettyLauncherMain.java:84)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> main(JettyEmbeddedLauncherMain.java:42)
> Caused by:
> java.io.FileNotFoundException:
> \org\apache\ctakes\temporal\ae\eventevent\20150630\model.jar (The system
> cannot find the path specified) at java.io.FileInputStream.open0(Native
> Method) at java.io.FileInputStream.open(Unknown Source) at
> java.io.FileInputStream.<init>(Unknown Source) at
> java.io.FileInputStream.<init>(Unknown Source) at
> org.cleartk.ml.jar.GenericJarClassifierFactory.createClassifier(
> GenericJarClassifierFactory.java:69)
> at
> org.cleartk.ml.jar.JarClassifierFactory.createClassifier(
> JarClassifierFactory.java:35)
> at org.cleartk.ml.CleartkAnnotator.initialize(CleartkAnnotator.java:135)
> at
> org.apache.ctakes.temporal.ae.TemporalRelationExtractorAnnot
> ator.initialize(TemporalRelationExtractorAnnotator.java:164)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initialize(PrimitiveAnalysisEngine_impl.java:156)
> at
> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(
> AnalysisEngineFactory_impl.java:94)
> at
> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(
> CompositeResourceFactory_impl.java:62)
> at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
> at
> org.apache.uima.UIMAFramework.produceAnalysisEngine(
> UIMAFramework.java:387)
> at
> org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(
> AggregateAnalysisEngine_impl.java:431)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initialize(AggregateAnalysisEngine_impl.java:185)
> at
> org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(
> AnalysisEngineFactory.java:711)
> at
> org.apache.uima.fit.factory.AggregateBuilder.createAggregate(
> AggregateBuilder.java:207)
> at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
> at
> org.eclipse.jetty.servlet.ServletHolder.initServlet(
> ServletHolder.java:532)
> at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.servlet.ServletHandler.initialize(
> ServletHandler.java:791)
> at
> org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> ServletContextHandler.java:265)
> at
> org.eclipse.jetty.webapp.WebAppContext.startContext(
> WebAppContext.java:1242)
> at
> org.eclipse.jetty.server.handler.ContextHandler.
> doStart(ContextHandler.java:717)
> at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.server.handler.HandlerWrapper.
> doStart(HandlerWrapper.java:95)
> at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(
> JettyEmbeddedAdapter.java:67)
> at
> net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> launch(AbstractJettyLauncherMain.java:84)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> main(JettyEmbeddedLauncherMain.java:42)
> 2017-11-30 12:27:11.058:WARN:oejuc.AbstractLifeCycle:FAILED
> cTakesWebClass:
> javax.servlet.ServletException:
> org.apache.uima.resource.ResourceInitializationException: Initialization
> of annotator class "org.apache.ctakes.temporal.ae.
> EventEventRelationAnnotator"
> failed. (Descriptor: <unknown>)
> javax.servlet.ServletException:
> org.apache.uima.resource.ResourceInitializationException: Initialization
> of annotator class "org.apache.ctakes.temporal.ae.
> EventEventRelationAnnotator"
> failed. (Descriptor: <unknown>)
> at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:38)
> at
> org.eclipse.jetty.servlet.ServletHolder.initServlet(
> ServletHolder.java:532)
> at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.servlet.ServletHandler.initialize(
> ServletHandler.java:791)
> at
> org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> ServletContextHandler.java:265)
> at
> org.eclipse.jetty.webapp.WebAppContext.startContext(
> WebAppContext.java:1242)
> at
> org.eclipse.jetty.server.handler.ContextHandler.
> doStart(ContextHandler.java:717)
> at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.server.handler.HandlerWrapper.
> doStart(HandlerWrapper.java:95)
> at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(
> JettyEmbeddedAdapter.java:67)
> at
> net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> launch(AbstractJettyLauncherMain.java:84)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> main(JettyEmbeddedLauncherMain.java:42)
> Caused by:
> org.apache.uima.resource.ResourceInitializationException: Initialization
> of annotator class "org.apache.ctakes.temporal.ae.
> EventEventRelationAnnotator"
> failed. (Descriptor: <unknown>)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:252)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initialize(PrimitiveAnalysisEngine_impl.java:156)
> at
> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(
> AnalysisEngineFactory_impl.java:94)
> at
> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(
> CompositeResourceFactory_impl.java:62)
> at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
> at
> org.apache.uima.UIMAFramework.produceAnalysisEngine(
> UIMAFramework.java:387)
> at
> org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(
> AggregateAnalysisEngine_impl.java:431)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initialize(AggregateAnalysisEngine_impl.java:185)
> at
> org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(
> AnalysisEngineFactory.java:711)
> at
> org.apache.uima.fit.factory.AggregateBuilder.createAggregate(
> AggregateBuilder.java:207)
> at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
> at
> org.eclipse.jetty.servlet.ServletHolder.initServlet(
> ServletHolder.java:532)
> at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.servlet.ServletHandler.initialize(
> ServletHandler.java:791)
> at
> org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> ServletContextHandler.java:265)
> at
> org.eclipse.jetty.webapp.WebAppContext.startContext(
> WebAppContext.java:1242)
> at
> org.eclipse.jetty.server.handler.ContextHandler.
> doStart(ContextHandler.java:717)
> at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.server.handler.HandlerWrapper.
> doStart(HandlerWrapper.java:95)
> at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(
> JettyEmbeddedAdapter.java:67)
> at
> net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> launch(AbstractJettyLauncherMain.java:84)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> main(JettyEmbeddedLauncherMain.java:42)
> Caused by:
> org.apache.uima.resource.ResourceInitializationException
> at org.cleartk.ml.CleartkAnnotator.initialize(CleartkAnnotator.java:137)
> at
> org.apache.ctakes.temporal.ae.TemporalRelationExtractorAnnot
> ator.initialize(TemporalRelationExtractorAnnotator.java:164)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initialize(PrimitiveAnalysisEngine_impl.java:156)
> at
> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(
> AnalysisEngineFactory_impl.java:94)
> at
> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(
> CompositeResourceFactory_impl.java:62)
> at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
> at
> org.apache.uima.UIMAFramework.produceAnalysisEngine(
> UIMAFramework.java:387)
> at
> org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(
> AggregateAnalysisEngine_impl.java:431)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initialize(AggregateAnalysisEngine_impl.java:185)
> at
> org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(
> AnalysisEngineFactory.java:711)
> at
> org.apache.uima.fit.factory.AggregateBuilder.createAggregate(
> AggregateBuilder.java:207)
> at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
> at
> org.eclipse.jetty.servlet.ServletHolder.initServlet(
> ServletHolder.java:532)
> at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.servlet.ServletHandler.initialize(
> ServletHandler.java:791)
> at
> org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> ServletContextHandler.java:265)
> at
> org.eclipse.jetty.webapp.WebAppContext.startContext(
> WebAppContext.java:1242)
> at
> org.eclipse.jetty.server.handler.ContextHandler.
> doStart(ContextHandler.java:717)
> at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.server.handler.HandlerWrapper.
> doStart(HandlerWrapper.java:95)
> at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(
> JettyEmbeddedAdapter.java:67)
> at
> net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> launch(AbstractJettyLauncherMain.java:84)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> main(JettyEmbeddedLauncherMain.java:42)
> Caused by:
> java.io.FileNotFoundException:
> \org\apache\ctakes\temporal\ae\eventevent\20150630\model.jar (The system
> cannot find the path specified) at java.io.FileInputStream.open0(Native
> Method) at java.io.FileInputStream.open(Unknown Source) at
> java.io.FileInputStream.<init>(Unknown Source) at
> java.io.FileInputStream.<init>(Unknown Source) at
> org.cleartk.ml.jar.GenericJarClassifierFactory.createClassifier(
> GenericJarClassifierFactory.java:69)
> at
> org.cleartk.ml.jar.JarClassifierFactory.createClassifier(
> JarClassifierFactory.java:35)
> at org.cleartk.ml.CleartkAnnotator.initialize(CleartkAnnotator.java:135)
> at
> org.apache.ctakes.temporal.ae.TemporalRelationExtractorAnnot
> ator.initialize(TemporalRelationExtractorAnnotator.java:164)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initialize(PrimitiveAnalysisEngine_impl.java:156)
> at
> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(
> AnalysisEngineFactory_impl.java:94)
> at
> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(
> CompositeResourceFactory_impl.java:62)
> at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
> at
> org.apache.uima.UIMAFramework.produceAnalysisEngine(
> UIMAFramework.java:387)
> at
> org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(
> AggregateAnalysisEngine_impl.java:431)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initialize(AggregateAnalysisEngine_impl.java:185)
> at
> org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(
> AnalysisEngineFactory.java:711)
> at
> org.apache.uima.fit.factory.AggregateBuilder.createAggregate(
> AggregateBuilder.java:207)
> at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
> at
> org.eclipse.jetty.servlet.ServletHolder.initServlet(
> ServletHolder.java:532)
> at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.servlet.ServletHandler.initialize(
> ServletHandler.java:791)
> at
> org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> ServletContextHandler.java:265)
> at
> org.eclipse.jetty.webapp.WebAppContext.startContext(
> WebAppContext.java:1242)
> at
> org.eclipse.jetty.server.handler.ContextHandler.
> doStart(ContextHandler.java:717)
> at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.server.handler.HandlerWrapper.
> doStart(HandlerWrapper.java:95)
> at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(
> JettyEmbeddedAdapter.java:67)
> at
> net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> launch(AbstractJettyLauncherMain.java:84)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> main(JettyEmbeddedLauncherMain.java:42)
> 2017-11-30 12:27:11.066:WARN:oejs.Holder:
> java.lang.ClassNotFoundException:
> com.sun.jersey.spi.container.servlet.ServletContainer
> at java.net.URLClassLoader.findClass(Unknown Source) at
> java.lang.ClassLoader.loadClass(Unknown Source) at sun.misc.Launcher$
> AppClassLoader.loadClass(Unknown Source) at java.lang.ClassLoader.loadClass(Unknown
> Source) at
> org.eclipse.jetty.webapp.WebAppClassLoader.loadClass(
> WebAppClassLoader.java:430)
> at
> org.eclipse.jetty.webapp.WebAppClassLoader.loadClass(
> WebAppClassLoader.java:383)
> at org.eclipse.jetty.util.Loader.loadClass(Loader.java:100)
> at org.eclipse.jetty.util.Loader.loadClass(Loader.java:79)
> at org.eclipse.jetty.servlet.Holder.doStart(Holder.java:107)
> at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:298)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.servlet.ServletHandler.initialize(
> ServletHandler.java:791)
> at
> org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> ServletContextHandler.java:265)
> at
> org.eclipse.jetty.webapp.WebAppContext.startContext(
> WebAppContext.java:1242)
> at
> org.eclipse.jetty.server.handler.ContextHandler.
> doStart(ContextHandler.java:717)
> at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.server.handler.HandlerWrapper.
> doStart(HandlerWrapper.java:95)
> at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(
> JettyEmbeddedAdapter.java:67)
> at
> net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> launch(AbstractJettyLauncherMain.java:84)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> main(JettyEmbeddedLauncherMain.java:42)
> 2017-11-30 12:27:11.066:WARN:/:unavailable
> javax.servlet.UnavailableException:
> com.sun.jersey.spi.container.servlet.ServletContainer
> at org.eclipse.jetty.servlet.Holder.doStart(Holder.java:114)
> at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:298)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.servlet.ServletHandler.initialize(
> ServletHandler.java:791)
> at
> org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> ServletContextHandler.java:265)
> at
> org.eclipse.jetty.webapp.WebAppContext.startContext(
> WebAppContext.java:1242)
> at
> org.eclipse.jetty.server.handler.ContextHandler.
> doStart(ContextHandler.java:717)
> at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.server.handler.HandlerWrapper.
> doStart(HandlerWrapper.java:95)
> at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(
> JettyEmbeddedAdapter.java:67)
> at
> net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> launch(AbstractJettyLauncherMain.java:84)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> main(JettyEmbeddedLauncherMain.java:42)
> 2017-11-30 12:27:11.066:WARN:oejuc.AbstractLifeCycle:FAILED Jersey RESTful
> Application: javax.servlet.UnavailableException:
> com.sun.jersey.spi.container.servlet.ServletContainer
> javax.servlet.UnavailableException:
> com.sun.jersey.spi.container.servlet.ServletContainer
> at org.eclipse.jetty.servlet.Holder.doStart(Holder.java:114)
> at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:298)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.servlet.ServletHandler.initialize(
> ServletHandler.java:791)
> at
> org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> ServletContextHandler.java:265)
> at
> org.eclipse.jetty.webapp.WebAppContext.startContext(
> WebAppContext.java:1242)
> at
> org.eclipse.jetty.server.handler.ContextHandler.
> doStart(ContextHandler.java:717)
> at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.server.handler.HandlerWrapper.
> doStart(HandlerWrapper.java:95)
> at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(
> JettyEmbeddedAdapter.java:67)
> at
> net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> launch(AbstractJettyLauncherMain.java:84)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> main(JettyEmbeddedLauncherMain.java:42)
> 2017-11-30 12:27:11.067:WARN:oejw.WebAppContext:Failed startup of context
> o.e.j.w.WebAppContext{/,file:/E:/cTakesLive/cTakes4.0/
> WebContent/},E:\cTakesLive\cTakes4.0\WebContent
> MultiException[javax.servlet.ServletException:
> org.apache.uima.resource.ResourceInitializationException: Initialization
> of annotator class "org.apache.ctakes.temporal.ae.
> EventEventRelationAnnotator"
> failed. (Descriptor: <unknown>), javax.servlet.UnavailableException:
> com.sun.jersey.spi.container.servlet.ServletContainer]
> at
> org.eclipse.jetty.servlet.ServletHandler.initialize(
> ServletHandler.java:762)
> at
> org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> ServletContextHandler.java:265)
> at
> org.eclipse.jetty.webapp.WebAppContext.startContext(
> WebAppContext.java:1242)
> at
> org.eclipse.jetty.server.handler.ContextHandler.
> doStart(ContextHandler.java:717)
> at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.server.handler.HandlerWrapper.
> doStart(HandlerWrapper.java:95)
> at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(
> JettyEmbeddedAdapter.java:67)
> at
> net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> launch(AbstractJettyLauncherMain.java:84)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> main(JettyEmbeddedLauncherMain.java:42)
> 2017-11-30 12:27:11.150:INFO:oejs.AbstractConnector:Started
> SelectChannelConnector@0.0.0.0:8080
>
>
> /////////////////////////////////////////////////////////////////
>
> How can I solve this please help me.
>
> regards,
> shyam k.
>
> On Thu, Nov 30, 2017 at 1:59 AM, James Masanz <ma...@gmail.com>
> wrote:
>
> > First, take a look at changes that might affect you, listed on the
> > Wiki
> > here:
> >
> > https://urldefense.proofpoint.com/v2/url?u=https-3A__cwiki.apache.org_confluence_display_CTAKES_New-2B&d=DwIBaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=GMS7z6wXokcMqQHAUda8o3XxG1M868mv_PRYbKeB0Zc&s=uosucKTceY1WhBHP6_cDURFltyO-A-O8mm603JhoYQs&e=
> > for+4.0#Newfor4.0-Changes
> >
> > I think in order to answer well, I'd need an explanation of how you
> > are using cTAKES now - just as maven dependencies? Or do you install
> > from a .tar.gz (or .zip)? Or do you check out the code from SVN?
> > Have you made modifications to cTAKES itself?
> >
> >
> >
> > On Wed, Nov 29, 2017 at 10:26 AM, Ks Sunder <sh...@gmail.com> wrote:
> >
> > > Hi,
> > >
> > >
> > > What are the steps need to change ctakes 3.x version to ctakes 4
> > > version
> > ,
> > > and can I change maven dependency..?
> > >
> > > Please help me.
> > >
> > > Regards,
> > > Shyam k.
> > >
> >
> This email and any files transmitted with it are confidential and intended
> solely for the use of the individual or entity to whom they are addressed.
> If you are not the named addressee you should not disseminate, distribute
> or copy this e-mail. Please notify the sender or system manager by email
> immediately if you have received this e-mail by mistake and delete this
> e-mail from your system. If you are not the intended recipient you are
> notified that disclosing, copying, distributing or taking any action in
> reliance on the contents of this information is strictly prohibited and
> against the law.
>
Re: Regarding cTakes version upadtion
Posted by Ks Sunder <sh...@gmail.com>.
Hi,
I commented in Pipeline :
\org\apache\ctakes\temporal\ae\eventevent\20150630\model.jar
stitll i am getting this error : UMLS Account at
https://uts-ws.nlm.nih.gov/restful/isValidUMLSUser is not valid for user
CHANGE_ME with CHANGE_ME ,
I changed UMLusername and password its notworking, but cTakes 3.x is
working properly through current Uml credentials,
we need any other credential for cTakes4.0...?
Error////////////////////////////////////////////////////////
30 Nov 2017 14:07:16 INFO DictionaryDescriptorParser - Parsing dictionary
specifications:
30 Nov 2017 14:07:16 INFO UmlsUserApprover - Checking UMLS Account at
https://uts-ws.nlm.nih.gov/restful/isValidUMLSUser for user CHANGE_ME:
........30 Nov 2017 14:07:18 ERROR UmlsUserApprover - UMLS Account at
https://uts-ws.nlm.nih.gov/restful/isValidUMLSUser is not valid for user
CHANGE_ME with CHANGE_ME
2017-11-30 14:07:18.867:WARN:/:unavailable
org.apache.uima.resource.ResourceInitializationException: Initialization of
annotator class
"org.apache.ctakes.dictionary.lookup2.ae.DefaultJCasTermAnnotator" failed.
(Descriptor: <unknown>)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:252)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at
org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at
org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at
org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at
org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
at
org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
org.apache.uima.resource.ResourceInitializationException: EXCEPTION MESSAGE
LOCALIZATION FAILED: java.util.MissingResourceException: Can't find
resource for bundle java.util.PropertyResourceBundle, key Could not
construct
org.apache.ctakes.dictionary.lookup2.dictionary.UmlsJdbcRareWordDictionary
at
org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:131)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at
org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at
org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at
org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at
org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
at
org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
org.apache.uima.analysis_engine.annotator.AnnotatorContextException:
EXCEPTION MESSAGE LOCALIZATION FAILED: java.util.MissingResourceException:
Can't find resource for bundle java.util.PropertyResourceBundle, key Could
not construct
org.apache.ctakes.dictionary.lookup2.dictionary.UmlsJdbcRareWordDictionary
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser.java:199)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser.java:156)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.java:128)
at
org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:129)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at
org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at
org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at
org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at
org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
at
org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
java.lang.reflect.InvocationTargetException
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source)
at java.lang.reflect.Constructor.newInstance(Unknown Source)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser.java:196)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser.java:156)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.java:128)
at
org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:129)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at
org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at
org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at
org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at
org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
at
org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
java.sql.SQLException: Invalid User for UMLS dictionary sno_rx_16abTerms
at
org.apache.ctakes.dictionary.lookup2.dictionary.UmlsJdbcRareWordDictionary.<init>(UmlsJdbcRareWordDictionary.java:29)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source)
at java.lang.reflect.Constructor.newInstance(Unknown Source)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser.java:196)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser.java:156)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.java:128)
at
org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:129)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at
org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at
org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at
org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at
org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
at
org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
2017-11-30 14:07:18.872:WARN:oejuc.AbstractLifeCycle:FAILED cTakesWebClass:
javax.servlet.ServletException:
org.apache.uima.resource.ResourceInitializationException: Initialization of
annotator class
"org.apache.ctakes.dictionary.lookup2.ae.DefaultJCasTermAnnotator" failed.
(Descriptor: <unknown>)
javax.servlet.ServletException:
org.apache.uima.resource.ResourceInitializationException: Initialization of
annotator class
"org.apache.ctakes.dictionary.lookup2.ae.DefaultJCasTermAnnotator" failed.
(Descriptor: <unknown>)
at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:38)
at
org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
org.apache.uima.resource.ResourceInitializationException: Initialization of
annotator class
"org.apache.ctakes.dictionary.lookup2.ae.DefaultJCasTermAnnotator" failed.
(Descriptor: <unknown>)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:252)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at
org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at
org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at
org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at
org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
at
org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
org.apache.uima.resource.ResourceInitializationException: EXCEPTION MESSAGE
LOCALIZATION FAILED: java.util.MissingResourceException: Can't find
resource for bundle java.util.PropertyResourceBundle, key Could not
construct
org.apache.ctakes.dictionary.lookup2.dictionary.UmlsJdbcRareWordDictionary
at
org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:131)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at
org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at
org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at
org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at
org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
at
org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
org.apache.uima.analysis_engine.annotator.AnnotatorContextException:
EXCEPTION MESSAGE LOCALIZATION FAILED: java.util.MissingResourceException:
Can't find resource for bundle java.util.PropertyResourceBundle, key Could
not construct
org.apache.ctakes.dictionary.lookup2.dictionary.UmlsJdbcRareWordDictionary
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser.java:199)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser.java:156)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.java:128)
at
org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:129)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at
org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at
org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at
org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at
org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
at
org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
java.lang.reflect.InvocationTargetException
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source)
at java.lang.reflect.Constructor.newInstance(Unknown Source)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser.java:196)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser.java:156)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.java:128)
at
org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:129)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at
org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at
org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at
org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at
org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
at
org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
java.sql.SQLException: Invalid User for UMLS dictionary sno_rx_16abTerms
at
org.apache.ctakes.dictionary.lookup2.dictionary.UmlsJdbcRareWordDictionary.<init>(UmlsJdbcRareWordDictionary.java:29)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source)
at java.lang.reflect.Constructor.newInstance(Unknown Source)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser.java:196)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser.java:156)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.java:128)
at
org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:129)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at
org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at
org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at
org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at
org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
at
org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
2017-11-30 14:07:18.877:WARN:oejs.Holder:
java.lang.ClassNotFoundException:
com.sun.jersey.spi.container.servlet.ServletContainer
at java.net.URLClassLoader.findClass(Unknown Source)
at java.lang.ClassLoader.loadClass(Unknown Source)
at sun.misc.Launcher$AppClassLoader.loadClass(Unknown Source)
at java.lang.ClassLoader.loadClass(Unknown Source)
at
org.eclipse.jetty.webapp.WebAppClassLoader.loadClass(WebAppClassLoader.java:430)
at
org.eclipse.jetty.webapp.WebAppClassLoader.loadClass(WebAppClassLoader.java:383)
at org.eclipse.jetty.util.Loader.loadClass(Loader.java:100)
at org.eclipse.jetty.util.Loader.loadClass(Loader.java:79)
at org.eclipse.jetty.servlet.Holder.doStart(Holder.java:107)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:298)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
2017-11-30 14:07:18.878:WARN:/:unavailable
regards,
shyam k.
On Thu, Nov 30, 2017 at 1:46 PM, Gandhi Rajan Natarajan <
Gandhi.Natarajan@arisglobal.com> wrote:
> Hey Sunder,
>
> Do you have the required files in your webapp resources folder?
>
> The below error shows the required files are missing:
>
> Caused by:
> java.io.FileNotFoundException:
> \org\apache\ctakes\temporal\ae\eventevent\20150630\model.jar (The system
> cannot find the path specified) at java.io.FileInputStream.open0(Native
> Method) at java.io.FileInputStream.open(Unknown Source) at
> java.io.FileInputStream.<init>(Unknown Source) at
> java.io.FileInputStream.<init>(Unknown Source)
>
> Check out this link - https://github.com/healthnlp/
> examples/tree/master/ctakes-temporal-demo/src/main/resources
>
> Regards,
> Gandhi
>
>
> -----Original Message-----
> From: Ks Sunder [mailto:shyam769@gmail.com]
> Sent: Thursday, November 30, 2017 12:38 PM
> To: dev@ctakes.apache.org
> Subject: Re: Regarding cTakes version upadtion
>
> Thank you James,
>
> just i am using Maven dependencies and i created one pipline class in
> that one AggregateBuilder for fastlookup,
>
> next i created one servlet for accessing AggregateBuilder.
>
> i did every thing .. But i am getting this Exception..
>
> //////////////////////////////////////////////////////////////////////////
>
> log4j: Level value for root is [INFO].
> log4j: root level set to INFO
> log4j: Class name: [org.apache.log4j.ConsoleAppender]
> log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
> log4j: Setting property [conversionPattern] to [%d{dd MMM yyyy HH:mm:ss}
> %5p %c{1} - %m%n].
> log4j: Adding appender named [consoleAppender] to category [root].
> 30 Nov 2017 12:27:02 INFO LvgAnnotator - URL for lvg.properties
> =file:/C:/Users/NI3102/.m2/repository/net/sourceforge/
> ctakesresources/ctakes-resources-lvg2008/4.0.0/
> ctakes-resources-lvg2008-4.0.0.jar!/org/apache/ctakes/lvg/
> data/config/lvg.properties
> 2017-11-30 12:27:11.055:WARN:/:unavailable
> org.apache.uima.resource.ResourceInitializationException: Initialization
> of annotator class "org.apache.ctakes.temporal.ae.
> EventEventRelationAnnotator"
> failed. (Descriptor: <unknown>)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:252)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initialize(PrimitiveAnalysisEngine_impl.java:156)
> at
> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(
> AnalysisEngineFactory_impl.java:94)
> at
> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(
> CompositeResourceFactory_impl.java:62)
> at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
> at
> org.apache.uima.UIMAFramework.produceAnalysisEngine(
> UIMAFramework.java:387)
> at
> org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(
> AggregateAnalysisEngine_impl.java:431)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initialize(AggregateAnalysisEngine_impl.java:185)
> at
> org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(
> AnalysisEngineFactory.java:711)
> at
> org.apache.uima.fit.factory.AggregateBuilder.createAggregate(
> AggregateBuilder.java:207)
> at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
> at
> org.eclipse.jetty.servlet.ServletHolder.initServlet(
> ServletHolder.java:532)
> at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.servlet.ServletHandler.initialize(
> ServletHandler.java:791)
> at
> org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> ServletContextHandler.java:265)
> at
> org.eclipse.jetty.webapp.WebAppContext.startContext(
> WebAppContext.java:1242)
> at
> org.eclipse.jetty.server.handler.ContextHandler.
> doStart(ContextHandler.java:717)
> at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.server.handler.HandlerWrapper.
> doStart(HandlerWrapper.java:95)
> at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(
> JettyEmbeddedAdapter.java:67)
> at
> net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> launch(AbstractJettyLauncherMain.java:84)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> main(JettyEmbeddedLauncherMain.java:42)
> Caused by:
> org.apache.uima.resource.ResourceInitializationException
> at org.cleartk.ml.CleartkAnnotator.initialize(CleartkAnnotator.java:137)
> at
> org.apache.ctakes.temporal.ae.TemporalRelationExtractorAnnot
> ator.initialize(TemporalRelationExtractorAnnotator.java:164)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initialize(PrimitiveAnalysisEngine_impl.java:156)
> at
> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(
> AnalysisEngineFactory_impl.java:94)
> at
> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(
> CompositeResourceFactory_impl.java:62)
> at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
> at
> org.apache.uima.UIMAFramework.produceAnalysisEngine(
> UIMAFramework.java:387)
> at
> org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(
> AggregateAnalysisEngine_impl.java:431)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initialize(AggregateAnalysisEngine_impl.java:185)
> at
> org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(
> AnalysisEngineFactory.java:711)
> at
> org.apache.uima.fit.factory.AggregateBuilder.createAggregate(
> AggregateBuilder.java:207)
> at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
> at
> org.eclipse.jetty.servlet.ServletHolder.initServlet(
> ServletHolder.java:532)
> at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.servlet.ServletHandler.initialize(
> ServletHandler.java:791)
> at
> org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> ServletContextHandler.java:265)
> at
> org.eclipse.jetty.webapp.WebAppContext.startContext(
> WebAppContext.java:1242)
> at
> org.eclipse.jetty.server.handler.ContextHandler.
> doStart(ContextHandler.java:717)
> at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.server.handler.HandlerWrapper.
> doStart(HandlerWrapper.java:95)
> at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(
> JettyEmbeddedAdapter.java:67)
> at
> net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> launch(AbstractJettyLauncherMain.java:84)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> main(JettyEmbeddedLauncherMain.java:42)
> Caused by:
> java.io.FileNotFoundException:
> \org\apache\ctakes\temporal\ae\eventevent\20150630\model.jar (The system
> cannot find the path specified) at java.io.FileInputStream.open0(Native
> Method) at java.io.FileInputStream.open(Unknown Source) at
> java.io.FileInputStream.<init>(Unknown Source) at
> java.io.FileInputStream.<init>(Unknown Source) at
> org.cleartk.ml.jar.GenericJarClassifierFactory.createClassifier(
> GenericJarClassifierFactory.java:69)
> at
> org.cleartk.ml.jar.JarClassifierFactory.createClassifier(
> JarClassifierFactory.java:35)
> at org.cleartk.ml.CleartkAnnotator.initialize(CleartkAnnotator.java:135)
> at
> org.apache.ctakes.temporal.ae.TemporalRelationExtractorAnnot
> ator.initialize(TemporalRelationExtractorAnnotator.java:164)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initialize(PrimitiveAnalysisEngine_impl.java:156)
> at
> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(
> AnalysisEngineFactory_impl.java:94)
> at
> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(
> CompositeResourceFactory_impl.java:62)
> at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
> at
> org.apache.uima.UIMAFramework.produceAnalysisEngine(
> UIMAFramework.java:387)
> at
> org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(
> AggregateAnalysisEngine_impl.java:431)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initialize(AggregateAnalysisEngine_impl.java:185)
> at
> org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(
> AnalysisEngineFactory.java:711)
> at
> org.apache.uima.fit.factory.AggregateBuilder.createAggregate(
> AggregateBuilder.java:207)
> at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
> at
> org.eclipse.jetty.servlet.ServletHolder.initServlet(
> ServletHolder.java:532)
> at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.servlet.ServletHandler.initialize(
> ServletHandler.java:791)
> at
> org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> ServletContextHandler.java:265)
> at
> org.eclipse.jetty.webapp.WebAppContext.startContext(
> WebAppContext.java:1242)
> at
> org.eclipse.jetty.server.handler.ContextHandler.
> doStart(ContextHandler.java:717)
> at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.server.handler.HandlerWrapper.
> doStart(HandlerWrapper.java:95)
> at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(
> JettyEmbeddedAdapter.java:67)
> at
> net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> launch(AbstractJettyLauncherMain.java:84)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> main(JettyEmbeddedLauncherMain.java:42)
> 2017-11-30 12:27:11.058:WARN:oejuc.AbstractLifeCycle:FAILED
> cTakesWebClass:
> javax.servlet.ServletException:
> org.apache.uima.resource.ResourceInitializationException: Initialization
> of annotator class "org.apache.ctakes.temporal.ae.
> EventEventRelationAnnotator"
> failed. (Descriptor: <unknown>)
> javax.servlet.ServletException:
> org.apache.uima.resource.ResourceInitializationException: Initialization
> of annotator class "org.apache.ctakes.temporal.ae.
> EventEventRelationAnnotator"
> failed. (Descriptor: <unknown>)
> at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:38)
> at
> org.eclipse.jetty.servlet.ServletHolder.initServlet(
> ServletHolder.java:532)
> at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.servlet.ServletHandler.initialize(
> ServletHandler.java:791)
> at
> org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> ServletContextHandler.java:265)
> at
> org.eclipse.jetty.webapp.WebAppContext.startContext(
> WebAppContext.java:1242)
> at
> org.eclipse.jetty.server.handler.ContextHandler.
> doStart(ContextHandler.java:717)
> at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.server.handler.HandlerWrapper.
> doStart(HandlerWrapper.java:95)
> at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(
> JettyEmbeddedAdapter.java:67)
> at
> net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> launch(AbstractJettyLauncherMain.java:84)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> main(JettyEmbeddedLauncherMain.java:42)
> Caused by:
> org.apache.uima.resource.ResourceInitializationException: Initialization
> of annotator class "org.apache.ctakes.temporal.ae.
> EventEventRelationAnnotator"
> failed. (Descriptor: <unknown>)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:252)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initialize(PrimitiveAnalysisEngine_impl.java:156)
> at
> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(
> AnalysisEngineFactory_impl.java:94)
> at
> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(
> CompositeResourceFactory_impl.java:62)
> at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
> at
> org.apache.uima.UIMAFramework.produceAnalysisEngine(
> UIMAFramework.java:387)
> at
> org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(
> AggregateAnalysisEngine_impl.java:431)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initialize(AggregateAnalysisEngine_impl.java:185)
> at
> org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(
> AnalysisEngineFactory.java:711)
> at
> org.apache.uima.fit.factory.AggregateBuilder.createAggregate(
> AggregateBuilder.java:207)
> at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
> at
> org.eclipse.jetty.servlet.ServletHolder.initServlet(
> ServletHolder.java:532)
> at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.servlet.ServletHandler.initialize(
> ServletHandler.java:791)
> at
> org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> ServletContextHandler.java:265)
> at
> org.eclipse.jetty.webapp.WebAppContext.startContext(
> WebAppContext.java:1242)
> at
> org.eclipse.jetty.server.handler.ContextHandler.
> doStart(ContextHandler.java:717)
> at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.server.handler.HandlerWrapper.
> doStart(HandlerWrapper.java:95)
> at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(
> JettyEmbeddedAdapter.java:67)
> at
> net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> launch(AbstractJettyLauncherMain.java:84)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> main(JettyEmbeddedLauncherMain.java:42)
> Caused by:
> org.apache.uima.resource.ResourceInitializationException
> at org.cleartk.ml.CleartkAnnotator.initialize(CleartkAnnotator.java:137)
> at
> org.apache.ctakes.temporal.ae.TemporalRelationExtractorAnnot
> ator.initialize(TemporalRelationExtractorAnnotator.java:164)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initialize(PrimitiveAnalysisEngine_impl.java:156)
> at
> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(
> AnalysisEngineFactory_impl.java:94)
> at
> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(
> CompositeResourceFactory_impl.java:62)
> at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
> at
> org.apache.uima.UIMAFramework.produceAnalysisEngine(
> UIMAFramework.java:387)
> at
> org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(
> AggregateAnalysisEngine_impl.java:431)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initialize(AggregateAnalysisEngine_impl.java:185)
> at
> org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(
> AnalysisEngineFactory.java:711)
> at
> org.apache.uima.fit.factory.AggregateBuilder.createAggregate(
> AggregateBuilder.java:207)
> at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
> at
> org.eclipse.jetty.servlet.ServletHolder.initServlet(
> ServletHolder.java:532)
> at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.servlet.ServletHandler.initialize(
> ServletHandler.java:791)
> at
> org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> ServletContextHandler.java:265)
> at
> org.eclipse.jetty.webapp.WebAppContext.startContext(
> WebAppContext.java:1242)
> at
> org.eclipse.jetty.server.handler.ContextHandler.
> doStart(ContextHandler.java:717)
> at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.server.handler.HandlerWrapper.
> doStart(HandlerWrapper.java:95)
> at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(
> JettyEmbeddedAdapter.java:67)
> at
> net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> launch(AbstractJettyLauncherMain.java:84)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> main(JettyEmbeddedLauncherMain.java:42)
> Caused by:
> java.io.FileNotFoundException:
> \org\apache\ctakes\temporal\ae\eventevent\20150630\model.jar (The system
> cannot find the path specified) at java.io.FileInputStream.open0(Native
> Method) at java.io.FileInputStream.open(Unknown Source) at
> java.io.FileInputStream.<init>(Unknown Source) at
> java.io.FileInputStream.<init>(Unknown Source) at
> org.cleartk.ml.jar.GenericJarClassifierFactory.createClassifier(
> GenericJarClassifierFactory.java:69)
> at
> org.cleartk.ml.jar.JarClassifierFactory.createClassifier(
> JarClassifierFactory.java:35)
> at org.cleartk.ml.CleartkAnnotator.initialize(CleartkAnnotator.java:135)
> at
> org.apache.ctakes.temporal.ae.TemporalRelationExtractorAnnot
> ator.initialize(TemporalRelationExtractorAnnotator.java:164)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initialize(PrimitiveAnalysisEngine_impl.java:156)
> at
> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(
> AnalysisEngineFactory_impl.java:94)
> at
> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(
> CompositeResourceFactory_impl.java:62)
> at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
> at
> org.apache.uima.UIMAFramework.produceAnalysisEngine(
> UIMAFramework.java:387)
> at
> org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(
> AggregateAnalysisEngine_impl.java:431)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initialize(AggregateAnalysisEngine_impl.java:185)
> at
> org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(
> AnalysisEngineFactory.java:711)
> at
> org.apache.uima.fit.factory.AggregateBuilder.createAggregate(
> AggregateBuilder.java:207)
> at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
> at
> org.eclipse.jetty.servlet.ServletHolder.initServlet(
> ServletHolder.java:532)
> at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.servlet.ServletHandler.initialize(
> ServletHandler.java:791)
> at
> org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> ServletContextHandler.java:265)
> at
> org.eclipse.jetty.webapp.WebAppContext.startContext(
> WebAppContext.java:1242)
> at
> org.eclipse.jetty.server.handler.ContextHandler.
> doStart(ContextHandler.java:717)
> at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.server.handler.HandlerWrapper.
> doStart(HandlerWrapper.java:95)
> at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(
> JettyEmbeddedAdapter.java:67)
> at
> net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> launch(AbstractJettyLauncherMain.java:84)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> main(JettyEmbeddedLauncherMain.java:42)
> 2017-11-30 12:27:11.066:WARN:oejs.Holder:
> java.lang.ClassNotFoundException:
> com.sun.jersey.spi.container.servlet.ServletContainer
> at java.net.URLClassLoader.findClass(Unknown Source) at
> java.lang.ClassLoader.loadClass(Unknown Source) at sun.misc.Launcher$
> AppClassLoader.loadClass(Unknown Source) at java.lang.ClassLoader.loadClass(Unknown
> Source) at
> org.eclipse.jetty.webapp.WebAppClassLoader.loadClass(
> WebAppClassLoader.java:430)
> at
> org.eclipse.jetty.webapp.WebAppClassLoader.loadClass(
> WebAppClassLoader.java:383)
> at org.eclipse.jetty.util.Loader.loadClass(Loader.java:100)
> at org.eclipse.jetty.util.Loader.loadClass(Loader.java:79)
> at org.eclipse.jetty.servlet.Holder.doStart(Holder.java:107)
> at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:298)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.servlet.ServletHandler.initialize(
> ServletHandler.java:791)
> at
> org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> ServletContextHandler.java:265)
> at
> org.eclipse.jetty.webapp.WebAppContext.startContext(
> WebAppContext.java:1242)
> at
> org.eclipse.jetty.server.handler.ContextHandler.
> doStart(ContextHandler.java:717)
> at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.server.handler.HandlerWrapper.
> doStart(HandlerWrapper.java:95)
> at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(
> JettyEmbeddedAdapter.java:67)
> at
> net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> launch(AbstractJettyLauncherMain.java:84)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> main(JettyEmbeddedLauncherMain.java:42)
> 2017-11-30 12:27:11.066:WARN:/:unavailable
> javax.servlet.UnavailableException:
> com.sun.jersey.spi.container.servlet.ServletContainer
> at org.eclipse.jetty.servlet.Holder.doStart(Holder.java:114)
> at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:298)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.servlet.ServletHandler.initialize(
> ServletHandler.java:791)
> at
> org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> ServletContextHandler.java:265)
> at
> org.eclipse.jetty.webapp.WebAppContext.startContext(
> WebAppContext.java:1242)
> at
> org.eclipse.jetty.server.handler.ContextHandler.
> doStart(ContextHandler.java:717)
> at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.server.handler.HandlerWrapper.
> doStart(HandlerWrapper.java:95)
> at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(
> JettyEmbeddedAdapter.java:67)
> at
> net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> launch(AbstractJettyLauncherMain.java:84)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> main(JettyEmbeddedLauncherMain.java:42)
> 2017-11-30 12:27:11.066:WARN:oejuc.AbstractLifeCycle:FAILED Jersey RESTful
> Application: javax.servlet.UnavailableException:
> com.sun.jersey.spi.container.servlet.ServletContainer
> javax.servlet.UnavailableException:
> com.sun.jersey.spi.container.servlet.ServletContainer
> at org.eclipse.jetty.servlet.Holder.doStart(Holder.java:114)
> at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:298)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.servlet.ServletHandler.initialize(
> ServletHandler.java:791)
> at
> org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> ServletContextHandler.java:265)
> at
> org.eclipse.jetty.webapp.WebAppContext.startContext(
> WebAppContext.java:1242)
> at
> org.eclipse.jetty.server.handler.ContextHandler.
> doStart(ContextHandler.java:717)
> at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.server.handler.HandlerWrapper.
> doStart(HandlerWrapper.java:95)
> at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(
> JettyEmbeddedAdapter.java:67)
> at
> net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> launch(AbstractJettyLauncherMain.java:84)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> main(JettyEmbeddedLauncherMain.java:42)
> 2017-11-30 12:27:11.067:WARN:oejw.WebAppContext:Failed startup of context
> o.e.j.w.WebAppContext{/,file:/E:/cTakesLive/cTakes4.0/
> WebContent/},E:\cTakesLive\cTakes4.0\WebContent
> MultiException[javax.servlet.ServletException:
> org.apache.uima.resource.ResourceInitializationException: Initialization
> of annotator class "org.apache.ctakes.temporal.ae.
> EventEventRelationAnnotator"
> failed. (Descriptor: <unknown>), javax.servlet.UnavailableException:
> com.sun.jersey.spi.container.servlet.ServletContainer]
> at
> org.eclipse.jetty.servlet.ServletHandler.initialize(
> ServletHandler.java:762)
> at
> org.eclipse.jetty.servlet.ServletContextHandler.startContext(
> ServletContextHandler.java:265)
> at
> org.eclipse.jetty.webapp.WebAppContext.startContext(
> WebAppContext.java:1242)
> at
> org.eclipse.jetty.server.handler.ContextHandler.
> doStart(ContextHandler.java:717)
> at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> org.eclipse.jetty.server.handler.HandlerWrapper.
> doStart(HandlerWrapper.java:95)
> at org.eclipse.jetty.server.Server.doStart(Server.java:282)
> at
> org.eclipse.jetty.util.component.AbstractLifeCycle.
> start(AbstractLifeCycle.java:64)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(
> JettyEmbeddedAdapter.java:67)
> at
> net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.
> launch(AbstractJettyLauncherMain.java:84)
> at
> net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.
> main(JettyEmbeddedLauncherMain.java:42)
> 2017-11-30 12:27:11.150:INFO:oejs.AbstractConnector:Started
> SelectChannelConnector@0.0.0.0:8080
>
>
> /////////////////////////////////////////////////////////////////
>
> How can I solve this please help me.
>
> regards,
> shyam k.
>
> On Thu, Nov 30, 2017 at 1:59 AM, James Masanz <ma...@gmail.com>
> wrote:
>
> > First, take a look at changes that might affect you, listed on the
> > Wiki
> > here:
> >
> > https://cwiki.apache.org/confluence/display/CTAKES/New+
> > for+4.0#Newfor4.0-Changes
> >
> > I think in order to answer well, I'd need an explanation of how you
> > are using cTAKES now - just as maven dependencies? Or do you install
> > from a .tar.gz (or .zip)? Or do you check out the code from SVN?
> > Have you made modifications to cTAKES itself?
> >
> >
> >
> > On Wed, Nov 29, 2017 at 10:26 AM, Ks Sunder <sh...@gmail.com> wrote:
> >
> > > Hi,
> > >
> > >
> > > What are the steps need to change ctakes 3.x version to ctakes 4
> > > version
> > ,
> > > and can I change maven dependency..?
> > >
> > > Please help me.
> > >
> > > Regards,
> > > Shyam k.
> > >
> >
> This email and any files transmitted with it are confidential and intended
> solely for the use of the individual or entity to whom they are addressed.
> If you are not the named addressee you should not disseminate, distribute
> or copy this e-mail. Please notify the sender or system manager by email
> immediately if you have received this e-mail by mistake and delete this
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> notified that disclosing, copying, distributing or taking any action in
> reliance on the contents of this information is strictly prohibited and
> against the law.
>
RE: Regarding cTakes version upadtion
Posted by Gandhi Rajan Natarajan <Ga...@arisglobal.com>.
Hey Sunder,
Do you have the required files in your webapp resources folder?
The below error shows the required files are missing:
Caused by:
java.io.FileNotFoundException:
\org\apache\ctakes\temporal\ae\eventevent\20150630\model.jar (The system cannot find the path specified) at java.io.FileInputStream.open0(Native Method) at java.io.FileInputStream.open(Unknown Source) at java.io.FileInputStream.<init>(Unknown Source) at java.io.FileInputStream.<init>(Unknown Source)
Check out this link - https://github.com/healthnlp/examples/tree/master/ctakes-temporal-demo/src/main/resources
Regards,
Gandhi
-----Original Message-----
From: Ks Sunder [mailto:shyam769@gmail.com]
Sent: Thursday, November 30, 2017 12:38 PM
To: dev@ctakes.apache.org
Subject: Re: Regarding cTakes version upadtion
Thank you James,
just i am using Maven dependencies and i created one pipline class in that one AggregateBuilder for fastlookup,
next i created one servlet for accessing AggregateBuilder.
i did every thing .. But i am getting this Exception..
//////////////////////////////////////////////////////////////////////////
log4j: Level value for root is [INFO].
log4j: root level set to INFO
log4j: Class name: [org.apache.log4j.ConsoleAppender]
log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
log4j: Setting property [conversionPattern] to [%d{dd MMM yyyy HH:mm:ss} %5p %c{1} - %m%n].
log4j: Adding appender named [consoleAppender] to category [root].
30 Nov 2017 12:27:02 INFO LvgAnnotator - URL for lvg.properties =file:/C:/Users/NI3102/.m2/repository/net/sourceforge/ctakesresources/ctakes-resources-lvg2008/4.0.0/ctakes-resources-lvg2008-4.0.0.jar!/org/apache/ctakes/lvg/data/config/lvg.properties
2017-11-30 12:27:11.055:WARN:/:unavailable
org.apache.uima.resource.ResourceInitializationException: Initialization of annotator class "org.apache.ctakes.temporal.ae.EventEventRelationAnnotator"
failed. (Descriptor: <unknown>)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:252)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at
org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at
org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at
org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at
org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
at
org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
org.apache.uima.resource.ResourceInitializationException
at org.cleartk.ml.CleartkAnnotator.initialize(CleartkAnnotator.java:137)
at
org.apache.ctakes.temporal.ae.TemporalRelationExtractorAnnotator.initialize(TemporalRelationExtractorAnnotator.java:164)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at
org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at
org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at
org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at
org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
at
org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
java.io.FileNotFoundException:
\org\apache\ctakes\temporal\ae\eventevent\20150630\model.jar (The system cannot find the path specified) at java.io.FileInputStream.open0(Native Method) at java.io.FileInputStream.open(Unknown Source) at java.io.FileInputStream.<init>(Unknown Source) at java.io.FileInputStream.<init>(Unknown Source) at
org.cleartk.ml.jar.GenericJarClassifierFactory.createClassifier(GenericJarClassifierFactory.java:69)
at
org.cleartk.ml.jar.JarClassifierFactory.createClassifier(JarClassifierFactory.java:35)
at org.cleartk.ml.CleartkAnnotator.initialize(CleartkAnnotator.java:135)
at
org.apache.ctakes.temporal.ae.TemporalRelationExtractorAnnotator.initialize(TemporalRelationExtractorAnnotator.java:164)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at
org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at
org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at
org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at
org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
at
org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
2017-11-30 12:27:11.058:WARN:oejuc.AbstractLifeCycle:FAILED cTakesWebClass:
javax.servlet.ServletException:
org.apache.uima.resource.ResourceInitializationException: Initialization of annotator class "org.apache.ctakes.temporal.ae.EventEventRelationAnnotator"
failed. (Descriptor: <unknown>)
javax.servlet.ServletException:
org.apache.uima.resource.ResourceInitializationException: Initialization of annotator class "org.apache.ctakes.temporal.ae.EventEventRelationAnnotator"
failed. (Descriptor: <unknown>)
at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:38)
at
org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
org.apache.uima.resource.ResourceInitializationException: Initialization of annotator class "org.apache.ctakes.temporal.ae.EventEventRelationAnnotator"
failed. (Descriptor: <unknown>)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:252)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at
org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at
org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at
org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at
org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
at
org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
org.apache.uima.resource.ResourceInitializationException
at org.cleartk.ml.CleartkAnnotator.initialize(CleartkAnnotator.java:137)
at
org.apache.ctakes.temporal.ae.TemporalRelationExtractorAnnotator.initialize(TemporalRelationExtractorAnnotator.java:164)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at
org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at
org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at
org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at
org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
at
org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
java.io.FileNotFoundException:
\org\apache\ctakes\temporal\ae\eventevent\20150630\model.jar (The system cannot find the path specified) at java.io.FileInputStream.open0(Native Method) at java.io.FileInputStream.open(Unknown Source) at java.io.FileInputStream.<init>(Unknown Source) at java.io.FileInputStream.<init>(Unknown Source) at
org.cleartk.ml.jar.GenericJarClassifierFactory.createClassifier(GenericJarClassifierFactory.java:69)
at
org.cleartk.ml.jar.JarClassifierFactory.createClassifier(JarClassifierFactory.java:35)
at org.cleartk.ml.CleartkAnnotator.initialize(CleartkAnnotator.java:135)
at
org.apache.ctakes.temporal.ae.TemporalRelationExtractorAnnotator.initialize(TemporalRelationExtractorAnnotator.java:164)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at
org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at
org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at
org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at
org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
at
org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
2017-11-30 12:27:11.066:WARN:oejs.Holder:
java.lang.ClassNotFoundException:
com.sun.jersey.spi.container.servlet.ServletContainer
at java.net.URLClassLoader.findClass(Unknown Source) at java.lang.ClassLoader.loadClass(Unknown Source) at sun.misc.Launcher$AppClassLoader.loadClass(Unknown Source) at java.lang.ClassLoader.loadClass(Unknown Source) at
org.eclipse.jetty.webapp.WebAppClassLoader.loadClass(WebAppClassLoader.java:430)
at
org.eclipse.jetty.webapp.WebAppClassLoader.loadClass(WebAppClassLoader.java:383)
at org.eclipse.jetty.util.Loader.loadClass(Loader.java:100)
at org.eclipse.jetty.util.Loader.loadClass(Loader.java:79)
at org.eclipse.jetty.servlet.Holder.doStart(Holder.java:107)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:298)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
2017-11-30 12:27:11.066:WARN:/:unavailable
javax.servlet.UnavailableException:
com.sun.jersey.spi.container.servlet.ServletContainer
at org.eclipse.jetty.servlet.Holder.doStart(Holder.java:114)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:298)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
2017-11-30 12:27:11.066:WARN:oejuc.AbstractLifeCycle:FAILED Jersey RESTful
Application: javax.servlet.UnavailableException:
com.sun.jersey.spi.container.servlet.ServletContainer
javax.servlet.UnavailableException:
com.sun.jersey.spi.container.servlet.ServletContainer
at org.eclipse.jetty.servlet.Holder.doStart(Holder.java:114)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:298)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
2017-11-30 12:27:11.067:WARN:oejw.WebAppContext:Failed startup of context o.e.j.w.WebAppContext{/,file:/E:/cTakesLive/cTakes4.0/WebContent/},E:\cTakesLive\cTakes4.0\WebContent
MultiException[javax.servlet.ServletException:
org.apache.uima.resource.ResourceInitializationException: Initialization of annotator class "org.apache.ctakes.temporal.ae.EventEventRelationAnnotator"
failed. (Descriptor: <unknown>), javax.servlet.UnavailableException:
com.sun.jersey.spi.container.servlet.ServletContainer]
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:762)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
2017-11-30 12:27:11.150:INFO:oejs.AbstractConnector:Started
SelectChannelConnector@0.0.0.0:8080
/////////////////////////////////////////////////////////////////
How can I solve this please help me.
regards,
shyam k.
On Thu, Nov 30, 2017 at 1:59 AM, James Masanz <ma...@gmail.com>
wrote:
> First, take a look at changes that might affect you, listed on the
> Wiki
> here:
>
> https://cwiki.apache.org/confluence/display/CTAKES/New+
> for+4.0#Newfor4.0-Changes
>
> I think in order to answer well, I'd need an explanation of how you
> are using cTAKES now - just as maven dependencies? Or do you install
> from a .tar.gz (or .zip)? Or do you check out the code from SVN?
> Have you made modifications to cTAKES itself?
>
>
>
> On Wed, Nov 29, 2017 at 10:26 AM, Ks Sunder <sh...@gmail.com> wrote:
>
> > Hi,
> >
> >
> > What are the steps need to change ctakes 3.x version to ctakes 4
> > version
> ,
> > and can I change maven dependency..?
> >
> > Please help me.
> >
> > Regards,
> > Shyam k.
> >
>
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Re: Regarding cTakes version upadtion
Posted by Ks Sunder <sh...@gmail.com>.
Thank you James,
just i am using Maven dependencies and i created one pipline class in that
one AggregateBuilder for fastlookup,
next i created one servlet for accessing AggregateBuilder.
i did every thing .. But i am getting this Exception..
//////////////////////////////////////////////////////////////////////////
log4j: Level value for root is [INFO].
log4j: root level set to INFO
log4j: Class name: [org.apache.log4j.ConsoleAppender]
log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
log4j: Setting property [conversionPattern] to [%d{dd MMM yyyy HH:mm:ss}
%5p %c{1} - %m%n].
log4j: Adding appender named [consoleAppender] to category [root].
30 Nov 2017 12:27:02 INFO LvgAnnotator - URL for lvg.properties
=file:/C:/Users/NI3102/.m2/repository/net/sourceforge/ctakesresources/ctakes-resources-lvg2008/4.0.0/ctakes-resources-lvg2008-4.0.0.jar!/org/apache/ctakes/lvg/data/config/lvg.properties
2017-11-30 12:27:11.055:WARN:/:unavailable
org.apache.uima.resource.ResourceInitializationException: Initialization of
annotator class "org.apache.ctakes.temporal.ae.EventEventRelationAnnotator"
failed. (Descriptor: <unknown>)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:252)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at
org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at
org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at
org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at
org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
at
org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
org.apache.uima.resource.ResourceInitializationException
at org.cleartk.ml.CleartkAnnotator.initialize(CleartkAnnotator.java:137)
at
org.apache.ctakes.temporal.ae.TemporalRelationExtractorAnnotator.initialize(TemporalRelationExtractorAnnotator.java:164)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at
org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at
org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at
org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at
org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
at
org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
java.io.FileNotFoundException:
\org\apache\ctakes\temporal\ae\eventevent\20150630\model.jar (The system
cannot find the path specified)
at java.io.FileInputStream.open0(Native Method)
at java.io.FileInputStream.open(Unknown Source)
at java.io.FileInputStream.<init>(Unknown Source)
at java.io.FileInputStream.<init>(Unknown Source)
at
org.cleartk.ml.jar.GenericJarClassifierFactory.createClassifier(GenericJarClassifierFactory.java:69)
at
org.cleartk.ml.jar.JarClassifierFactory.createClassifier(JarClassifierFactory.java:35)
at org.cleartk.ml.CleartkAnnotator.initialize(CleartkAnnotator.java:135)
at
org.apache.ctakes.temporal.ae.TemporalRelationExtractorAnnotator.initialize(TemporalRelationExtractorAnnotator.java:164)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at
org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at
org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at
org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at
org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
at
org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
2017-11-30 12:27:11.058:WARN:oejuc.AbstractLifeCycle:FAILED cTakesWebClass:
javax.servlet.ServletException:
org.apache.uima.resource.ResourceInitializationException: Initialization of
annotator class "org.apache.ctakes.temporal.ae.EventEventRelationAnnotator"
failed. (Descriptor: <unknown>)
javax.servlet.ServletException:
org.apache.uima.resource.ResourceInitializationException: Initialization of
annotator class "org.apache.ctakes.temporal.ae.EventEventRelationAnnotator"
failed. (Descriptor: <unknown>)
at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:38)
at
org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
org.apache.uima.resource.ResourceInitializationException: Initialization of
annotator class "org.apache.ctakes.temporal.ae.EventEventRelationAnnotator"
failed. (Descriptor: <unknown>)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:252)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at
org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at
org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at
org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at
org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
at
org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
org.apache.uima.resource.ResourceInitializationException
at org.cleartk.ml.CleartkAnnotator.initialize(CleartkAnnotator.java:137)
at
org.apache.ctakes.temporal.ae.TemporalRelationExtractorAnnotator.initialize(TemporalRelationExtractorAnnotator.java:164)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at
org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at
org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at
org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at
org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
at
org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
java.io.FileNotFoundException:
\org\apache\ctakes\temporal\ae\eventevent\20150630\model.jar (The system
cannot find the path specified)
at java.io.FileInputStream.open0(Native Method)
at java.io.FileInputStream.open(Unknown Source)
at java.io.FileInputStream.<init>(Unknown Source)
at java.io.FileInputStream.<init>(Unknown Source)
at
org.cleartk.ml.jar.GenericJarClassifierFactory.createClassifier(GenericJarClassifierFactory.java:69)
at
org.cleartk.ml.jar.JarClassifierFactory.createClassifier(JarClassifierFactory.java:35)
at org.cleartk.ml.CleartkAnnotator.initialize(CleartkAnnotator.java:135)
at
org.apache.ctakes.temporal.ae.TemporalRelationExtractorAnnotator.initialize(TemporalRelationExtractorAnnotator.java:164)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at
org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at
org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at
org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at
org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.app.webservlet.cTakesWebClass.init(cTakesWebClass.java:36)
at
org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
2017-11-30 12:27:11.066:WARN:oejs.Holder:
java.lang.ClassNotFoundException:
com.sun.jersey.spi.container.servlet.ServletContainer
at java.net.URLClassLoader.findClass(Unknown Source)
at java.lang.ClassLoader.loadClass(Unknown Source)
at sun.misc.Launcher$AppClassLoader.loadClass(Unknown Source)
at java.lang.ClassLoader.loadClass(Unknown Source)
at
org.eclipse.jetty.webapp.WebAppClassLoader.loadClass(WebAppClassLoader.java:430)
at
org.eclipse.jetty.webapp.WebAppClassLoader.loadClass(WebAppClassLoader.java:383)
at org.eclipse.jetty.util.Loader.loadClass(Loader.java:100)
at org.eclipse.jetty.util.Loader.loadClass(Loader.java:79)
at org.eclipse.jetty.servlet.Holder.doStart(Holder.java:107)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:298)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
2017-11-30 12:27:11.066:WARN:/:unavailable
javax.servlet.UnavailableException:
com.sun.jersey.spi.container.servlet.ServletContainer
at org.eclipse.jetty.servlet.Holder.doStart(Holder.java:114)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:298)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
2017-11-30 12:27:11.066:WARN:oejuc.AbstractLifeCycle:FAILED Jersey RESTful
Application: javax.servlet.UnavailableException:
com.sun.jersey.spi.container.servlet.ServletContainer
javax.servlet.UnavailableException:
com.sun.jersey.spi.container.servlet.ServletContainer
at org.eclipse.jetty.servlet.Holder.doStart(Holder.java:114)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:298)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
2017-11-30 12:27:11.067:WARN:oejw.WebAppContext:Failed startup of context
o.e.j.w.WebAppContext{/,file:/E:/cTakesLive/cTakes4.0/WebContent/},E:\cTakesLive\cTakes4.0\WebContent
MultiException[javax.servlet.ServletException:
org.apache.uima.resource.ResourceInitializationException: Initialization of
annotator class "org.apache.ctakes.temporal.ae.EventEventRelationAnnotator"
failed. (Descriptor: <unknown>), javax.servlet.UnavailableException:
com.sun.jersey.spi.container.servlet.ServletContainer]
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:762)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
2017-11-30 12:27:11.150:INFO:oejs.AbstractConnector:Started
SelectChannelConnector@0.0.0.0:8080
/////////////////////////////////////////////////////////////////
How can I solve this please help me.
regards,
shyam k.
On Thu, Nov 30, 2017 at 1:59 AM, James Masanz <ma...@gmail.com>
wrote:
> First, take a look at changes that might affect you, listed on the Wiki
> here:
>
> https://cwiki.apache.org/confluence/display/CTAKES/New+
> for+4.0#Newfor4.0-Changes
>
> I think in order to answer well, I'd need an explanation of how you are
> using cTAKES now - just as maven dependencies? Or do you install from a
> .tar.gz (or .zip)? Or do you check out the code from SVN?
> Have you made modifications to cTAKES itself?
>
>
>
> On Wed, Nov 29, 2017 at 10:26 AM, Ks Sunder <sh...@gmail.com> wrote:
>
> > Hi,
> >
> >
> > What are the steps need to change ctakes 3.x version to ctakes 4 version
> ,
> > and can I change maven dependency..?
> >
> > Please help me.
> >
> > Regards,
> > Shyam k.
> >
>
Re: Regarding cTakes version upadtion
Posted by James Masanz <ma...@gmail.com>.
First, take a look at changes that might affect you, listed on the Wiki
here:
https://cwiki.apache.org/confluence/display/CTAKES/New+for+4.0#Newfor4.0-Changes
I think in order to answer well, I'd need an explanation of how you are
using cTAKES now - just as maven dependencies? Or do you install from a
.tar.gz (or .zip)? Or do you check out the code from SVN?
Have you made modifications to cTAKES itself?
On Wed, Nov 29, 2017 at 10:26 AM, Ks Sunder <sh...@gmail.com> wrote:
> Hi,
>
>
> What are the steps need to change ctakes 3.x version to ctakes 4 version ,
> and can I change maven dependency..?
>
> Please help me.
>
> Regards,
> Shyam k.
>