gold standard annotations for cTAKES

["Savova, Guergana" <Gu...@childrens.harvard.edu>]

A while ago our physician colleague John Green created 16 realistically looking (but fake) clinical notes. Many thanks again, John!

These notes are in ctakes-examples/data/notes. We now volunteer to annotate them with gold annotations. The main elements with their attributes are:
Medications, Attributes ::= span   associatedCode change_status_model conditional  dosage_model duration_model  end_date form_model frequency_model generic negation_indicator  route_model  start_date  strength_model  subject  uncertainty_indicator


Signs/Symptoms, Attributes ::= associated_code body_location conditional course duration end_time generic historyOf negation_indicator relative_temporal_context severity start_time subject uncertainty_indicator



Anatomical Sites, Attributes ::= associatedCode  conditional  generic  negation_indicator  subject  uncertainty_indicator



Disease/DisordersAttributes ::= associated_code body_location conditional course duration end_time  generic historyOf negation_indicator relative_temporal_context severity start_time subject uncertainty_indicator



Procedures, Attributes ::= associated_code  body_location conditional duration end_time generic historyOf method negation_indicator relative_temporal_context start_time subject uncertainty_indicator



We expect to have the gold annotations by end of March. We are using the Anafora annotation tool (https://github.com/weitechen/anafora ) and will release the annotations in the xml format.



Regards,

--Guergana

Guergana Savova, PhD, FACMI
Associate Professor
PI Natural Language Processing Lab
Boston Children's Hospital and Harvard Medical School
300 Longwood Avenue
Mailstop: BCH3092
Enders 144.1
Boston, MA 02115
Tel: (617) 919-2972
Fax: (617) 730-0817
Guergana.Savova@childrens.harvard.edu<ma...@childrens.harvard.edu>
Harvard Scholar: http://scholar.harvard.edu/guergana_k_savova/biocv
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