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Jenkins build is still unstable: ctakes-trunk-compiletest #1104
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1104/display/redirect?page=changes>
Jenkins build is back to normal : ctakes-trunk-compiletest #1130
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Build failed in Jenkins: ctakes-trunk-compiletest #1129
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1129/display/redirect?page=changes>
Changes:
[alexz] CTAKES-479: skip testCPE when UMLS credentials not exported as env vars
------------------------------------------
[...truncated 549.99 KB...]
found: List
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/LookupParseUtilitiesRefactor.java>:[302,64] [unchecked] unchecked conversion
[ERROR] required: List<Element>
found: List
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[75,75] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[76,78] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[77,76] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[78,74] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[80,36] error: cannot find symbol
[ERROR] symbol: variable UmlsEnvironmentConfiguration
location: class UmlsDictionaryLookupAnnotator
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[133,13] error: cannot find symbol
[ERROR] symbol: variable UmlsEnvironmentConfiguration
location: class UmlsDictionaryLookupAnnotator
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[135,13] error: cannot find symbol
[ERROR] symbol: variable UmlsEnvironmentConfiguration
location: class UmlsDictionaryLookupAnnotator
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/strtable/FieldConstraintImpl.java>:[60,41] [unchecked] unchecked call to compareTo(T) as a member of the raw type Comparable
[ERROR] where T is a type-variable:
T extends Object declared in interface Comparable
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/assertion/CreateAssertionLuceneIndexFromDelimitedFile.java>:[266,15] [unchecked] unchecked call to put(K,V) as a member of the raw type Map
[ERROR] where K,V are type-variables:
K extends Object declared in interface Map
V extends Object declared in interface Map
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/assertion/CreateAssertionLuceneIndexFromDelimitedFile.java>:[389,19] [unchecked] unchecked method invocation: method sort in class Collections is applied to given types
[ERROR] required: List<T>,Comparator<? super T>
found: List,OffsetComparator
where T is a type-variable:
T extends Object declared in method <T>sort(List<T>,Comparator<? super T>)
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/assertion/CreateAssertionLuceneIndexFromDelimitedFile.java>:[389,20] [unchecked] unchecked conversion
[ERROR] required: List<T>
found: List
where T is a type-variable:
T extends Object declared in method <T>sort(List<T>,Comparator<? super T>)
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsToSnomedLuceneConsumerImpl.java>:[94,34] [deprecation] open(Directory) in IndexReader has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/ThreadedUmlsDictionaryLookupAnnotator.java>:[47,88] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/ThreadedUmlsDictionaryLookupAnnotator.java>:[48,88] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/ThreadedUmlsDictionaryLookupAnnotator.java>:[49,86] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/ThreadedUmlsDictionaryLookupAnnotator.java>:[50,90] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/ThreadedUmlsDictionaryLookupAnnotator.java>:[51,31] error: cannot find symbol
[ERROR] symbol: variable UmlsEnvironmentConfiguration
location: class ThreadedUmlsDictionaryLookupAnnotator
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/AssertionCuePhraseConsumerImpl.java>:[96,45] [unchecked] unchecked method invocation: method organizeByOffset in class BaseLookupConsumerImpl is applied to given types
[ERROR] required: Iterator<LookupHit>
found: Iterator
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/AssertionCuePhraseConsumerImpl.java>:[96,46] [unchecked] unchecked conversion
[ERROR] required: Iterator<LookupHit>
found: Iterator
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/algorithms/FirstTokenPermutationImpl.java>:[213,44] [unchecked] unchecked conversion
[INFO] 28 errors
[INFO] -------------------------------------------------------------
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[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ..................................... SUCCESS [4.412s]
[INFO] ctakes-gui-res .................................... SUCCESS [3.661s]
[INFO] Apache cTAKES Resources core ...................... SUCCESS [2.309s]
[INFO] Apache cTAKES common type system .................. SUCCESS [7.880s]
[INFO] Apache cTAKES utils ............................... SUCCESS [3.402s]
[INFO] Apache cTAKES core ................................ SUCCESS [22.913s]
[INFO] ctakes-gui ........................................ SUCCESS [3.852s]
[INFO] Apache cTAKES Resources pos-tagger ................ SUCCESS [2.399s]
[INFO] Apache cTAKES part-of-speech tagger ............... SUCCESS [4.732s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ........ SUCCESS [2.304s]
[INFO] Apache cTAKES chunker ............................. SUCCESS [3.291s]
[INFO] Apache cTAKES document preprocessor ............... SUCCESS [3.697s]
[INFO] Apache cTAKES Resources dictionary-lookup ......... SUCCESS [9.836s]
[INFO] Apache cTAKES dictionary lookup ................... FAILURE [2.779s]
[INFO] Apache cTAKES context dependent tokenizer ......... SKIPPED
[INFO] Apache cTAKES Resources lvg ....................... SKIPPED
[INFO] Apache cTAKES LVG lexical tools ................... SKIPPED
[INFO] Apache cTAKES Resources ne-contexts ............... SKIPPED
[INFO] Apache cTAKES named entity contexts ............... SKIPPED
[INFO] Apache cTAKES Resources constituency-parser ....... SKIPPED
[INFO] Apache cTAKES Constituency Parser ................. SKIPPED
[INFO] Apache cTAKES Resources coreference ............... SKIPPED
[INFO] Apache cTAKES Resources temporal .................. SKIPPED
[INFO] Apache cTAKES Resources relation-extractor ........ SKIPPED
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res SKIPPED
[INFO] Apache cTAKES dictionary lookup fast .............. SKIPPED
[INFO] Apache cTAKES Resources assertion ................. SKIPPED
[INFO] Apache cTAKES Resources dependency-parser ......... SKIPPED
[INFO] Apache cTAKES Dependency Parser ................... SKIPPED
[INFO] Apache cTAKES Assertion ........................... SKIPPED
[INFO] ctakes-clinical-pipeline-res ...................... SKIPPED
[INFO] Apache cTAKES ctakes-clinical-pipeline ............ SKIPPED
[INFO] Apache cTAKES Relation Extractor .................. SKIPPED
[INFO] Apache cTAKES Temporal Information Extraction ..... SKIPPED
[INFO] Apache cTAKES CoReference Resolver ................ SKIPPED
[INFO] Apache cTAKES Resources drug-ner .................. SKIPPED
[INFO] Apache cTAKES Drug NER ............................ SKIPPED
[INFO] Apache cTAKES Resources side-effect ............... SKIPPED
[INFO] Apache cTAKES Side Effects ........................ SKIPPED
[INFO] Apache cTAKES Resources smoking-status ............ SKIPPED
[INFO] Apache cTAKES Smoking Status ...................... SKIPPED
[INFO] Apache cTAKES Resources assertion-zoner ........... SKIPPED
[INFO] Apache cTAKES Assertion's zoner ................... SKIPPED
[INFO] ctakes-examples-res ............................... SKIPPED
[INFO] ctakes-examples ................................... SKIPPED
[INFO] Apache cTAKES Resources ctakes-ytex-res ........... SKIPPED
[INFO] Apache cTAKES YTEX ................................ SKIPPED
[INFO] Apache cTAKES YTEX UIMA ........................... SKIPPED
[INFO] Apache cTAKES YTEX Web ............................ SKIPPED
[INFO] Apache cTAKES Distribution ........................ SKIPPED
[INFO] Apache cTAKES Regression-test ..................... SKIPPED
[INFO] Apache cTAKES template filler ..................... SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 1:40.044s
[INFO] Finished at: Thu Nov 16 22:27:59 UTC 2017
[INFO] Final Memory: 57M/781M
[INFO] ------------------------------------------------------------------------
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[ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.4:compile (default-compile) on project ctakes-dictionary-lookup: Compilation failure: Compilation failure:
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[22,32] error: cannot find symbol
[ERROR] symbol: class UmlsEnvironmentConfiguration
[ERROR] location: package org.apache.ctakes.core.ae
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/ThreadedUmlsDictionaryLookupAnnotator.java>:[21,32] error: cannot find symbol
[ERROR] symbol: class UmlsEnvironmentConfiguration
[ERROR] location: package org.apache.ctakes.core.ae
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/LookupParseUtilitiesRefactor.java>:[87,72] [unchecked] unchecked conversion
[ERROR] required: List<Element>
[ERROR] found: List
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/LookupParseUtilitiesRefactor.java>:[161,95] [unchecked] unchecked conversion
[ERROR] required: List<Element>
[ERROR] found: List
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/LookupParseUtilitiesRefactor.java>:[174,23] [unchecked] unchecked method invocation: method addExcludeList in class LookupParseUtilitiesRefactor is applied to given types
[ERROR] required: DictionaryEngine,List<Element>
[ERROR] found: DictionaryEngine,List
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/LookupParseUtilitiesRefactor.java>:[174,60] [unchecked] unchecked conversion
[ERROR] required: List<Element>
[ERROR] found: List
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/LookupParseUtilitiesRefactor.java>:[205,72] [unchecked] unchecked conversion
[ERROR] required: List<Element>
[ERROR] found: List
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/LookupParseUtilitiesRefactor.java>:[302,64] [unchecked] unchecked conversion
[ERROR] required: List<Element>
[ERROR] found: List
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[75,75] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[76,78] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[77,76] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[78,74] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[80,36] error: cannot find symbol
[ERROR] symbol: variable UmlsEnvironmentConfiguration
[ERROR] location: class UmlsDictionaryLookupAnnotator
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[133,13] error: cannot find symbol
[ERROR] symbol: variable UmlsEnvironmentConfiguration
[ERROR] location: class UmlsDictionaryLookupAnnotator
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[135,13] error: cannot find symbol
[ERROR] symbol: variable UmlsEnvironmentConfiguration
[ERROR] location: class UmlsDictionaryLookupAnnotator
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/strtable/FieldConstraintImpl.java>:[60,41] [unchecked] unchecked call to compareTo(T) as a member of the raw type Comparable
[ERROR] where T is a type-variable:
[ERROR] T extends Object declared in interface Comparable
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/assertion/CreateAssertionLuceneIndexFromDelimitedFile.java>:[266,15] [unchecked] unchecked call to put(K,V) as a member of the raw type Map
[ERROR] where K,V are type-variables:
[ERROR] K extends Object declared in interface Map
[ERROR] V extends Object declared in interface Map
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/assertion/CreateAssertionLuceneIndexFromDelimitedFile.java>:[389,19] [unchecked] unchecked method invocation: method sort in class Collections is applied to given types
[ERROR] required: List<T>,Comparator<? super T>
[ERROR] found: List,OffsetComparator
[ERROR] where T is a type-variable:
[ERROR] T extends Object declared in method <T>sort(List<T>,Comparator<? super T>)
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/assertion/CreateAssertionLuceneIndexFromDelimitedFile.java>:[389,20] [unchecked] unchecked conversion
[ERROR] required: List<T>
[ERROR] found: List
[ERROR] where T is a type-variable:
[ERROR] T extends Object declared in method <T>sort(List<T>,Comparator<? super T>)
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsToSnomedLuceneConsumerImpl.java>:[94,34] [deprecation] open(Directory) in IndexReader has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/ThreadedUmlsDictionaryLookupAnnotator.java>:[47,88] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/ThreadedUmlsDictionaryLookupAnnotator.java>:[48,88] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/ThreadedUmlsDictionaryLookupAnnotator.java>:[49,86] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/ThreadedUmlsDictionaryLookupAnnotator.java>:[50,90] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/ThreadedUmlsDictionaryLookupAnnotator.java>:[51,31] error: cannot find symbol
[ERROR] symbol: variable UmlsEnvironmentConfiguration
[ERROR] location: class ThreadedUmlsDictionaryLookupAnnotator
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/AssertionCuePhraseConsumerImpl.java>:[96,45] [unchecked] unchecked method invocation: method organizeByOffset in class BaseLookupConsumerImpl is applied to given types
[ERROR] required: Iterator<LookupHit>
[ERROR] found: Iterator
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/AssertionCuePhraseConsumerImpl.java>:[96,46] [unchecked] unchecked conversion
[ERROR] required: Iterator<LookupHit>
[ERROR] found: Iterator
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/algorithms/FirstTokenPermutationImpl.java>:[213,44] [unchecked] unchecked conversion
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-dictionary-lookup
Sending e-mails to: notifications@ctakes.apache.org alexz@apache.org
channel stopped
Jenkins build is unstable: ctakes-trunk-compiletest #1128
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1128/display/redirect?page=changes>
Build failed in Jenkins: ctakes-trunk-compiletest #1127
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1127/display/redirect?page=changes>
Changes:
[seanfinan] Minor refactor (shorter names)
[seanfinan] Rewrite of Patient view cache
------------------------------------------
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[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES utils 4.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-utils ---
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-utils ---
[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-utils ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-utils/src/main/resources>
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-utils ---
[INFO] Compiling 26 source files to <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-utils/target/classes>
[WARNING] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-utils/src/main/java/org/apache/ctakes/utils/wiki/WikiIndex.java>:[92,28] [deprecation] open(Directory) in IndexReader has been deprecated
[WARNING] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-utils/src/main/java/org/apache/ctakes/utils/wiki/WikiIndex.java>:[293,60] [deprecation] LUCENE_30 in Version has been deprecated
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-utils ---
[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-utils ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-utils/src/main/resources>
[INFO] Copying 3 resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-utils ---
[INFO] Nothing to compile - all classes are up to date
[INFO]
[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-utils ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-utils/src/test/resources>
[INFO] Copying 3 resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-utils ---
[INFO] No sources to compile
[INFO]
[INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @ ctakes-utils ---
[INFO] Surefire report directory: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-utils/target/surefire-reports>
-------------------------------------------------------
T E S T S
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[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES core 4.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-core ---
[INFO]
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[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-core ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/resources>
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-core ---
[INFO] Compiling 229 source files to <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/target/classes>
[INFO] -------------------------------------------------------------
[ERROR] COMPILATION ERROR :
[INFO] -------------------------------------------------------------
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/FilesInDirectoryCollectionReader.java>:[113,26] [deprecation] locateFile(String) in FileLocator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/ae/SentenceDetector.java>:[314,30] [deprecation] train(String,ObjectStream<SentenceSample>,boolean,Dictionary,TrainingParameters) in SentenceDetectorME has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/util/ListIterable.java>:[34,50] [unchecked] unchecked cast
[ERROR] required: T
found: TOP
where T is a type-variable:
T extends Object declared in class FSListIterator
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/FileTreeReader.java>:[126,39] error: cannot find symbol
[ERROR] symbol: method setDocCount(String,int)
location: class PatientNoteStore
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/FileTreeReader.java>:[130,78] error: cannot find symbol
[ERROR] symbol: method setDocCount(String,Integer)
location: class PatientNoteStore
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/patient/AbstractPatientConsumer.java>:[66,77] error: cannot find symbol
[ERROR] symbol: method getPatientIds()
location: class PatientNoteStore
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/patient/AbstractPatientConsumer.java>:[87,55] error: cannot find symbol
[ERROR] symbol: method getPatientCas(String)
location: class PatientNoteStore
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/JdbcCollectionReader.java>:[177,25] [unchecked] unchecked conversion
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/patient/PatientNoteCollector.java>:[37,36] error: cannot find symbol
[INFO] 9 errors
[INFO] -------------------------------------------------------------
[JENKINS] Archiving disabled
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ..................................... SUCCESS [5.987s]
[INFO] ctakes-gui-res .................................... SUCCESS [3.772s]
[INFO] Apache cTAKES Resources core ...................... SUCCESS [2.382s]
[INFO] Apache cTAKES common type system .................. SUCCESS [7.814s]
[INFO] Apache cTAKES utils ............................... SUCCESS [3.312s]
[INFO] Apache cTAKES core ................................ FAILURE [3.341s]
[INFO] ctakes-gui ........................................ SKIPPED
[INFO] Apache cTAKES Resources pos-tagger ................ SKIPPED
[INFO] Apache cTAKES part-of-speech tagger ............... SKIPPED
[INFO] Apache cTAKES Resources ctakes-chunker-res ........ SKIPPED
[INFO] Apache cTAKES chunker ............................. SKIPPED
[INFO] Apache cTAKES document preprocessor ............... SKIPPED
[INFO] Apache cTAKES Resources dictionary-lookup ......... SKIPPED
[INFO] Apache cTAKES dictionary lookup ................... SKIPPED
[INFO] Apache cTAKES context dependent tokenizer ......... SKIPPED
[INFO] Apache cTAKES Resources lvg ....................... SKIPPED
[INFO] Apache cTAKES LVG lexical tools ................... SKIPPED
[INFO] Apache cTAKES Resources ne-contexts ............... SKIPPED
[INFO] Apache cTAKES named entity contexts ............... SKIPPED
[INFO] Apache cTAKES Resources constituency-parser ....... SKIPPED
[INFO] Apache cTAKES Constituency Parser ................. SKIPPED
[INFO] Apache cTAKES Resources coreference ............... SKIPPED
[INFO] Apache cTAKES Resources temporal .................. SKIPPED
[INFO] Apache cTAKES Resources relation-extractor ........ SKIPPED
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res SKIPPED
[INFO] Apache cTAKES dictionary lookup fast .............. SKIPPED
[INFO] Apache cTAKES Resources assertion ................. SKIPPED
[INFO] Apache cTAKES Resources dependency-parser ......... SKIPPED
[INFO] Apache cTAKES Dependency Parser ................... SKIPPED
[INFO] Apache cTAKES Assertion ........................... SKIPPED
[INFO] ctakes-clinical-pipeline-res ...................... SKIPPED
[INFO] Apache cTAKES ctakes-clinical-pipeline ............ SKIPPED
[INFO] Apache cTAKES Relation Extractor .................. SKIPPED
[INFO] Apache cTAKES Temporal Information Extraction ..... SKIPPED
[INFO] Apache cTAKES CoReference Resolver ................ SKIPPED
[INFO] Apache cTAKES Resources drug-ner .................. SKIPPED
[INFO] Apache cTAKES Drug NER ............................ SKIPPED
[INFO] Apache cTAKES Resources side-effect ............... SKIPPED
[INFO] Apache cTAKES Side Effects ........................ SKIPPED
[INFO] Apache cTAKES Resources smoking-status ............ SKIPPED
[INFO] Apache cTAKES Smoking Status ...................... SKIPPED
[INFO] Apache cTAKES Resources assertion-zoner ........... SKIPPED
[INFO] Apache cTAKES Assertion's zoner ................... SKIPPED
[INFO] ctakes-examples-res ............................... SKIPPED
[INFO] ctakes-examples ................................... SKIPPED
[INFO] Apache cTAKES Resources ctakes-ytex-res ........... SKIPPED
[INFO] Apache cTAKES YTEX ................................ SKIPPED
[INFO] Apache cTAKES YTEX UIMA ........................... SKIPPED
[INFO] Apache cTAKES YTEX Web ............................ SKIPPED
[INFO] Apache cTAKES Distribution ........................ SKIPPED
[INFO] Apache cTAKES Regression-test ..................... SKIPPED
[INFO] Apache cTAKES template filler ..................... SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 38.299s
[INFO] Finished at: Thu Nov 16 20:28:29 UTC 2017
[INFO] Final Memory: 37M/411M
[INFO] ------------------------------------------------------------------------
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Waiting for Jenkins to finish collecting data
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.4:compile (default-compile) on project ctakes-core: Compilation failure: Compilation failure:
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/FilesInDirectoryCollectionReader.java>:[113,26] [deprecation] locateFile(String) in FileLocator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/ae/SentenceDetector.java>:[314,30] [deprecation] train(String,ObjectStream<SentenceSample>,boolean,Dictionary,TrainingParameters) in SentenceDetectorME has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/util/ListIterable.java>:[34,50] [unchecked] unchecked cast
[ERROR] required: T
[ERROR] found: TOP
[ERROR] where T is a type-variable:
[ERROR] T extends Object declared in class FSListIterator
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/FileTreeReader.java>:[126,39] error: cannot find symbol
[ERROR] symbol: method setDocCount(String,int)
[ERROR] location: class PatientNoteStore
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/FileTreeReader.java>:[130,78] error: cannot find symbol
[ERROR] symbol: method setDocCount(String,Integer)
[ERROR] location: class PatientNoteStore
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/patient/AbstractPatientConsumer.java>:[66,77] error: cannot find symbol
[ERROR] symbol: method getPatientIds()
[ERROR] location: class PatientNoteStore
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/patient/AbstractPatientConsumer.java>:[87,55] error: cannot find symbol
[ERROR] symbol: method getPatientCas(String)
[ERROR] location: class PatientNoteStore
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/JdbcCollectionReader.java>:[177,25] [unchecked] unchecked conversion
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/patient/PatientNoteCollector.java>:[37,36] error: cannot find symbol
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-core
Sending e-mails to: notifications@ctakes.apache.org sean.finan@tch.harvard.edu
channel stopped
Jenkins build is still unstable: ctakes-trunk-compiletest #1126
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1126/display/redirect?page=changes>
Jenkins build is still unstable: ctakes-trunk-compiletest #1125
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1125/display/redirect?page=changes>
Jenkins build is still unstable: ctakes-trunk-compiletest #1124
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1124/display/redirect?page=changes>
Jenkins build is still unstable: ctakes-trunk-compiletest #1123
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1123/display/redirect?page=changes>
Jenkins build is unstable: ctakes-trunk-compiletest #1122
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1122/display/redirect?page=changes>
Build failed in Jenkins: ctakes-trunk-compiletest #1121
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1121/display/redirect?page=changes>
Changes:
[seanfinan] FileTreeReader : Allow specification of a single file
------------------------------------------
[...truncated 806.39 KB...]
** Error: problem of opening/reading config file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-lvg-res/target/classes/org/apache/ctakes/lvg/data/config/lvg.properties'.> Use -x option to specify the config file path.
** Configuration Error: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-lvg-res/target/classes/org/apache/ctakes/lvg/data/config/lvg.properties> (No such file or directory)
** Error: problem of opening/reading config file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-lvg-res/target/classes/org/apache/ctakes/lvg/data/config/lvg.properties'.> Use -x option to specify the config file path.
09 Nov 2017 16:32:58 INFO LvgCmdApiResourceImpl - cd <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal>
09 Nov 2017 16:32:58 INFO ContextDependentTokenizerAnnotator - Finite state machines loaded.
09 Nov 2017 16:32:58 INFO POSTagger - POS tagger model file: org/apache/ctakes/postagger/models/mayo-pos.zip
Loading configuration.
Loading feature templates.
Loading lexica.
Loading model:
........................................................................................
09 Nov 2017 16:33:10 INFO ClearNLPDependencyParserAE - Initializing ClearNLP dependency parser, using lemmatizer: true
09 Nov 2017 16:33:10 INFO BackwardsTimeAnnotator - Initializing ...
.
09 Nov 2017 16:33:10 INFO BackwardsTimeAnnotator - Finished.
09 Nov 2017 16:33:13 INFO EventEventRelationAnnotator - Initializing ...
.
09 Nov 2017 16:33:13 INFO EventEventRelationAnnotator - Finished.
09 Nov 2017 16:33:13 INFO SentenceDetector - Starting processing.
09 Nov 2017 16:33:13 INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
09 Nov 2017 16:33:13 INFO LvgAnnotator - process(JCas)
09 Nov 2017 16:33:13 INFO ContextDependentTokenizerAnnotator - process(JCas)
09 Nov 2017 16:33:13 INFO POSTagger - process(JCas)
09 Nov 2017 16:33:13 INFO ClearNLPDependencyParserAE - Dependency parser starting with thread:main
09 Nov 2017 16:33:13 INFO ClearNLPDependencyParserAE - Dependency parser ending with thread:main
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 17.332 sec
Results :
Tests run: 5, Failures: 0, Errors: 0, Skipped: 0
[JENKINS] Recording test results
[JENKINS] Archiving disabled
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES CoReference Resolver 4.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-coreference ---
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-coreference ---
[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-coreference ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 12 resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- jcasgen-maven-plugin:2.9.0:generate (default) @ ctakes-coreference ---
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/PredicateArgRelation.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/CollectionRelation.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/VecInst.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/Pair.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/BooleanLabeledFS.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/Properties.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/TypeSystem.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/CoreferenceRelation.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/RelationArgument.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/BinaryRelation.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/Relation.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/DiscoveryTechnique.xml'>
[INFO] JCasGen: Limiting generation to descriptors in '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference'>
[INFO] JCasGen: Output going to '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/target/generated-sources/jcasgen'>
[INFO] JCasGen: Reading the XML TAE descriptor, and creating types, for xml input file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/target/jcasgen/typesystem.xml'.>
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.AnaphoricityVecInstance'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.AnaphoricityVecInstance_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.BinaryRelation'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.BinaryRelation_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.BooleanLabeledFS'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.BooleanLabeledFS_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.CollectionRelation'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.CollectionRelation_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.CoreferenceRelation'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.CoreferenceRelation_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.DemMarkable'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.DemMarkable_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.DiscoveryTechnique'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.DiscoveryTechnique_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Markable'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Markable_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.MarkablePair'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.MarkablePair_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.MarkablePairSet'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.MarkablePairSet_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.NEMarkable'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.NEMarkable_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.NonCoreferenceRelation'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.NonCoreferenceRelation_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Pair'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Pair_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.PredicateArgRelation'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.PredicateArgRelation_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.PronounMarkable'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.PronounMarkable_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Properties'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Properties_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Relation'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Relation_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.RelationArgument'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.RelationArgument_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.UnrelationArgument'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.UnrelationArgument_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.VecInstance'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.VecInstance_Type'.
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-coreference ---
[INFO] Compiling 134 source files to <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/target/classes>
[INFO] -------------------------------------------------------------
[ERROR] COMPILATION ERROR :
[INFO] -------------------------------------------------------------
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/eval/EvaluationOfEventCoreference.java>:[1030,53] error: cannot find symbol
[ERROR] symbol: method getPreviousPatientName()
location: variable notes of type PatientNoteStore
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/eval/EvaluationOfEventCoreference.java>:[1076,53] error: cannot find symbol
[INFO] 2 errors
[INFO] -------------------------------------------------------------
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[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ..................................... SUCCESS [4.492s]
[INFO] ctakes-gui-res .................................... SUCCESS [21.969s]
[INFO] Apache cTAKES Resources core ...................... SUCCESS [2.227s]
[INFO] Apache cTAKES common type system .................. SUCCESS [22.039s]
[INFO] Apache cTAKES utils ............................... SUCCESS [3.231s]
[INFO] Apache cTAKES core ................................ SUCCESS [21.007s]
[INFO] ctakes-gui ........................................ SUCCESS [3.890s]
[INFO] Apache cTAKES Resources pos-tagger ................ SUCCESS [2.198s]
[INFO] Apache cTAKES part-of-speech tagger ............... SUCCESS [7.927s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ........ SUCCESS [2.238s]
[INFO] Apache cTAKES chunker ............................. SUCCESS [3.432s]
[INFO] Apache cTAKES document preprocessor ............... SUCCESS [3.537s]
[INFO] Apache cTAKES Resources dictionary-lookup ......... SUCCESS [10.248s]
[INFO] Apache cTAKES dictionary lookup ................... SUCCESS [4.194s]
[INFO] Apache cTAKES context dependent tokenizer ......... SUCCESS [7.684s]
[INFO] Apache cTAKES Resources lvg ....................... SUCCESS [26.527s]
[INFO] Apache cTAKES LVG lexical tools ................... SUCCESS [4.865s]
[INFO] Apache cTAKES Resources ne-contexts ............... SUCCESS [3.580s]
[INFO] Apache cTAKES named entity contexts ............... SUCCESS [3.880s]
[INFO] Apache cTAKES Resources constituency-parser ....... SUCCESS [2.362s]
[INFO] Apache cTAKES Constituency Parser ................. SUCCESS [3.130s]
[INFO] Apache cTAKES Resources coreference ............... SUCCESS [2.259s]
[INFO] Apache cTAKES Resources temporal .................. SUCCESS [2.374s]
[INFO] Apache cTAKES Resources relation-extractor ........ SUCCESS [2.234s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res SUCCESS [3.149s]
[INFO] Apache cTAKES dictionary lookup fast .............. SUCCESS [2.940s]
[INFO] Apache cTAKES Resources assertion ................. SUCCESS [2.326s]
[INFO] Apache cTAKES Resources dependency-parser ......... SUCCESS [2.649s]
[INFO] Apache cTAKES Dependency Parser ................... SUCCESS [35.241s]
[INFO] Apache cTAKES Assertion ........................... SUCCESS [4.042s]
[INFO] ctakes-clinical-pipeline-res ...................... SUCCESS [2.222s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............ SUCCESS [5.213s]
[INFO] Apache cTAKES Relation Extractor .................. SUCCESS [11.722s]
[INFO] Apache cTAKES Temporal Information Extraction ..... SUCCESS [1:46.445s]
[INFO] Apache cTAKES CoReference Resolver ................ FAILURE [4.911s]
[INFO] Apache cTAKES Resources drug-ner .................. SKIPPED
[INFO] Apache cTAKES Drug NER ............................ SKIPPED
[INFO] Apache cTAKES Resources side-effect ............... SKIPPED
[INFO] Apache cTAKES Side Effects ........................ SKIPPED
[INFO] Apache cTAKES Resources smoking-status ............ SKIPPED
[INFO] Apache cTAKES Smoking Status ...................... SKIPPED
[INFO] Apache cTAKES Resources assertion-zoner ........... SKIPPED
[INFO] Apache cTAKES Assertion's zoner ................... SKIPPED
[INFO] ctakes-examples-res ............................... SKIPPED
[INFO] ctakes-examples ................................... SKIPPED
[INFO] Apache cTAKES Resources ctakes-ytex-res ........... SKIPPED
[INFO] Apache cTAKES YTEX ................................ SKIPPED
[INFO] Apache cTAKES YTEX UIMA ........................... SKIPPED
[INFO] Apache cTAKES YTEX Web ............................ SKIPPED
[INFO] Apache cTAKES Distribution ........................ SKIPPED
[INFO] Apache cTAKES Regression-test ..................... SKIPPED
[INFO] Apache cTAKES template filler ..................... SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 6:35.599s
[INFO] Finished at: Thu Nov 09 16:33:21 UTC 2017
[INFO] Final Memory: 71M/467M
[INFO] ------------------------------------------------------------------------
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[ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.4:compile (default-compile) on project ctakes-coreference: Compilation failure: Compilation failure:
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/eval/EvaluationOfEventCoreference.java>:[1030,53] error: cannot find symbol
[ERROR] symbol: method getPreviousPatientName()
[ERROR] location: variable notes of type PatientNoteStore
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/eval/EvaluationOfEventCoreference.java>:[1076,53] error: cannot find symbol
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-coreference
Sending e-mails to: notifications@ctakes.apache.org timothy.miller@childrens.harvard.edu
channel stopped
Build failed in Jenkins: ctakes-trunk-compiletest #1120
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1120/display/redirect?page=changes>
Changes:
[tmill] Removed unused and non-existent type.
------------------------------------------
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** Configuration Error: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-lvg-res/target/classes/org/apache/ctakes/lvg/data/config/lvg.properties> (No such file or directory)
** Error: problem of opening/reading config file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-lvg-res/target/classes/org/apache/ctakes/lvg/data/config/lvg.properties'.> Use -x option to specify the config file path.
08 Nov 2017 17:32:43 INFO LvgCmdApiResourceImpl - cd <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal>
08 Nov 2017 17:32:43 INFO ContextDependentTokenizerAnnotator - Finite state machines loaded.
08 Nov 2017 17:32:43 INFO POSTagger - POS tagger model file: org/apache/ctakes/postagger/models/mayo-pos.zip
Loading configuration.
Loading feature templates.
Loading lexica.
Loading model:
........................................................................................
08 Nov 2017 17:32:54 INFO ClearNLPDependencyParserAE - Initializing ClearNLP dependency parser, using lemmatizer: true
08 Nov 2017 17:32:54 INFO BackwardsTimeAnnotator - Initializing ...
.
08 Nov 2017 17:32:54 INFO BackwardsTimeAnnotator - Finished.
08 Nov 2017 17:32:54 INFO SentenceDetector - Starting processing.
08 Nov 2017 17:32:54 INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
08 Nov 2017 17:32:54 INFO LvgAnnotator - process(JCas)
08 Nov 2017 17:32:54 INFO ContextDependentTokenizerAnnotator - process(JCas)
08 Nov 2017 17:32:54 INFO POSTagger - process(JCas)
08 Nov 2017 17:32:54 INFO ClearNLPDependencyParserAE - Dependency parser starting with thread:main
08 Nov 2017 17:32:54 INFO ClearNLPDependencyParserAE - Dependency parser ending with thread:main
08 Nov 2017 17:32:54 INFO BackwardsTimeAnnotatorTest - Time: recently
08 Nov 2017 17:32:54 INFO BackwardsTimeAnnotatorTest - Time class: DATE
08 Nov 2017 17:32:54 INFO BackwardsTimeAnnotatorTest - Time: until 6 months ago
08 Nov 2017 17:32:54 INFO BackwardsTimeAnnotatorTest - Time class: DATE
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 12.337 sec
Results :
Tests run: 5, Failures: 0, Errors: 0, Skipped: 0
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[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES CoReference Resolver 4.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-coreference ---
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-coreference ---
[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-coreference ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 12 resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- jcasgen-maven-plugin:2.9.0:generate (default) @ ctakes-coreference ---
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/DiscoveryTechnique.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/PredicateArgRelation.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/BooleanLabeledFS.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/BinaryRelation.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/CoreferenceRelation.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/Properties.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/RelationArgument.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/CollectionRelation.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/Pair.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/VecInst.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/TypeSystem.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/Relation.xml'>
[INFO] JCasGen: Limiting generation to descriptors in '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference'>
[INFO] JCasGen: Output going to '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/target/generated-sources/jcasgen'>
[INFO] JCasGen: Reading the XML TAE descriptor, and creating types, for xml input file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/target/jcasgen/typesystem.xml'.>
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.AnaphoricityVecInstance'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.AnaphoricityVecInstance_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.BinaryRelation'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.BinaryRelation_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.BooleanLabeledFS'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.BooleanLabeledFS_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.CollectionRelation'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.CollectionRelation_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.CoreferenceRelation'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.CoreferenceRelation_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.DemMarkable'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.DemMarkable_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.DiscoveryTechnique'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.DiscoveryTechnique_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Markable'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Markable_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.MarkablePair'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.MarkablePair_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.MarkablePairSet'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.MarkablePairSet_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.NEMarkable'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.NEMarkable_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.NonCoreferenceRelation'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.NonCoreferenceRelation_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Pair'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Pair_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.PredicateArgRelation'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.PredicateArgRelation_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.PronounMarkable'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.PronounMarkable_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Properties'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Properties_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Relation'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Relation_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.RelationArgument'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.RelationArgument_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.UnrelationArgument'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.UnrelationArgument_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.VecInstance'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.VecInstance_Type'.
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-coreference ---
[INFO] Compiling 134 source files to <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/target/classes>
[INFO] -------------------------------------------------------------
[ERROR] COMPILATION ERROR :
[INFO] -------------------------------------------------------------
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/eval/EvaluationOfEventCoreference.java>:[1030,53] error: cannot find symbol
[ERROR] symbol: method getPreviousPatientName()
location: variable notes of type PatientNoteStore
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/eval/EvaluationOfEventCoreference.java>:[1076,53] error: cannot find symbol
[INFO] 2 errors
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[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ..................................... SUCCESS [5.011s]
[INFO] ctakes-gui-res .................................... SUCCESS [4.390s]
[INFO] Apache cTAKES Resources core ...................... SUCCESS [2.450s]
[INFO] Apache cTAKES common type system .................. SUCCESS [9.711s]
[INFO] Apache cTAKES utils ............................... SUCCESS [3.688s]
[INFO] Apache cTAKES core ................................ SUCCESS [22.435s]
[INFO] ctakes-gui ........................................ SUCCESS [3.870s]
[INFO] Apache cTAKES Resources pos-tagger ................ SUCCESS [2.453s]
[INFO] Apache cTAKES part-of-speech tagger ............... SUCCESS [5.253s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ........ SUCCESS [2.453s]
[INFO] Apache cTAKES chunker ............................. SUCCESS [3.510s]
[INFO] Apache cTAKES document preprocessor ............... SUCCESS [3.800s]
[INFO] Apache cTAKES Resources dictionary-lookup ......... SUCCESS [14.408s]
[INFO] Apache cTAKES dictionary lookup ................... SUCCESS [4.031s]
[INFO] Apache cTAKES context dependent tokenizer ......... SUCCESS [4.791s]
[INFO] Apache cTAKES Resources lvg ....................... SUCCESS [31.593s]
[INFO] Apache cTAKES LVG lexical tools ................... SUCCESS [6.611s]
[INFO] Apache cTAKES Resources ne-contexts ............... SUCCESS [16.493s]
[INFO] Apache cTAKES named entity contexts ............... SUCCESS [4.480s]
[INFO] Apache cTAKES Resources constituency-parser ....... SUCCESS [2.620s]
[INFO] Apache cTAKES Constituency Parser ................. SUCCESS [3.432s]
[INFO] Apache cTAKES Resources coreference ............... SUCCESS [2.665s]
[INFO] Apache cTAKES Resources temporal .................. SUCCESS [2.506s]
[INFO] Apache cTAKES Resources relation-extractor ........ SUCCESS [2.402s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res SUCCESS [3.420s]
[INFO] Apache cTAKES dictionary lookup fast .............. SUCCESS [3.069s]
[INFO] Apache cTAKES Resources assertion ................. SUCCESS [2.533s]
[INFO] Apache cTAKES Resources dependency-parser ......... SUCCESS [2.880s]
[INFO] Apache cTAKES Dependency Parser ................... SUCCESS [37.033s]
[INFO] Apache cTAKES Assertion ........................... SUCCESS [4.688s]
[INFO] ctakes-clinical-pipeline-res ...................... SUCCESS [2.361s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............ SUCCESS [4.972s]
[INFO] Apache cTAKES Relation Extractor .................. SUCCESS [8.251s]
[INFO] Apache cTAKES Temporal Information Extraction ..... SUCCESS [1:26.465s]
[INFO] Apache cTAKES CoReference Resolver ................ FAILURE [4.566s]
[INFO] Apache cTAKES Resources drug-ner .................. SKIPPED
[INFO] Apache cTAKES Drug NER ............................ SKIPPED
[INFO] Apache cTAKES Resources side-effect ............... SKIPPED
[INFO] Apache cTAKES Side Effects ........................ SKIPPED
[INFO] Apache cTAKES Resources smoking-status ............ SKIPPED
[INFO] Apache cTAKES Smoking Status ...................... SKIPPED
[INFO] Apache cTAKES Resources assertion-zoner ........... SKIPPED
[INFO] Apache cTAKES Assertion's zoner ................... SKIPPED
[INFO] ctakes-examples-res ............................... SKIPPED
[INFO] ctakes-examples ................................... SKIPPED
[INFO] Apache cTAKES Resources ctakes-ytex-res ........... SKIPPED
[INFO] Apache cTAKES YTEX ................................ SKIPPED
[INFO] Apache cTAKES YTEX UIMA ........................... SKIPPED
[INFO] Apache cTAKES YTEX Web ............................ SKIPPED
[INFO] Apache cTAKES Distribution ........................ SKIPPED
[INFO] Apache cTAKES Regression-test ..................... SKIPPED
[INFO] Apache cTAKES template filler ..................... SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 6:12.007s
[INFO] Finished at: Wed Nov 08 17:33:02 UTC 2017
[INFO] Final Memory: 76M/577M
[INFO] ------------------------------------------------------------------------
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[ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.4:compile (default-compile) on project ctakes-coreference: Compilation failure: Compilation failure:
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/eval/EvaluationOfEventCoreference.java>:[1030,53] error: cannot find symbol
[ERROR] symbol: method getPreviousPatientName()
[ERROR] location: variable notes of type PatientNoteStore
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/eval/EvaluationOfEventCoreference.java>:[1076,53] error: cannot find symbol
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-coreference
Sending e-mails to: notifications@ctakes.apache.org timothy.miller@childrens.harvard.edu
channel stopped
Build failed in Jenkins: ctakes-trunk-compiletest #1119
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1119/display/redirect?page=changes>
Changes:
[tmill] New patient collector model working for coreference evaluation.
------------------------------------------
[...truncated 807.48 KB...]
Loading configuration.
Loading feature templates.
Loading lexica.
Loading model:
........................................................................................
08 Nov 2017 16:34:50 INFO ClearNLPDependencyParserAE - Initializing ClearNLP dependency parser, using lemmatizer: true
08 Nov 2017 16:34:50 INFO BackwardsTimeAnnotator - Initializing ...
08 Nov 2017 16:34:50 INFO BackwardsTimeAnnotator - Finished.
08 Nov 2017 16:34:53 INFO EventEventRelationAnnotator - Initializing ...
.
08 Nov 2017 16:34:53 INFO EventEventRelationAnnotator - Finished.
08 Nov 2017 16:34:53 INFO SentenceDetector - Starting processing.
08 Nov 2017 16:34:53 INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
08 Nov 2017 16:34:53 INFO LvgAnnotator - process(JCas)
08 Nov 2017 16:34:53 INFO ContextDependentTokenizerAnnotator - process(JCas)
08 Nov 2017 16:34:53 INFO POSTagger - process(JCas)
08 Nov 2017 16:34:53 INFO ClearNLPDependencyParserAE - Dependency parser starting with thread:main
08 Nov 2017 16:34:53 INFO ClearNLPDependencyParserAE - Dependency parser ending with thread:main
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 14.747 sec
Results :
Tests run: 5, Failures: 0, Errors: 0, Skipped: 0
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[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES CoReference Resolver 4.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-coreference ---
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-coreference ---
[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-coreference ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 12 resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- jcasgen-maven-plugin:2.9.0:generate (default) @ ctakes-coreference ---
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/PredicateArgRelation.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/CollectionRelation.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/VecInst.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/Pair.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/BooleanLabeledFS.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/Properties.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/TypeSystem.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/CoreferenceRelation.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/RelationArgument.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/BinaryRelation.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/Relation.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/DiscoveryTechnique.xml'>
[INFO] JCasGen: Limiting generation to descriptors in '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference'>
[INFO] JCasGen: Output going to '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/target/generated-sources/jcasgen'>
[INFO] JCasGen: Reading the XML TAE descriptor, and creating types, for xml input file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/target/jcasgen/typesystem.xml'.>
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.AnaphoricityVecInstance'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.AnaphoricityVecInstance_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.BinaryRelation'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.BinaryRelation_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.BooleanLabeledFS'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.BooleanLabeledFS_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.CollectionRelation'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.CollectionRelation_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.CoreferenceRelation'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.CoreferenceRelation_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.DemMarkable'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.DemMarkable_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.DiscoveryTechnique'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.DiscoveryTechnique_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Markable'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Markable_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.MarkablePair'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.MarkablePair_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.MarkablePairSet'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.MarkablePairSet_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.NEMarkable'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.NEMarkable_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.NonCoreferenceRelation'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.NonCoreferenceRelation_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Pair'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Pair_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.PredicateArgRelation'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.PredicateArgRelation_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.PronounMarkable'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.PronounMarkable_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Properties'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Properties_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Relation'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Relation_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.RelationArgument'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.RelationArgument_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.UnrelationArgument'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.UnrelationArgument_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.VecInstance'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.VecInstance_Type'.
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-coreference ---
[INFO] Compiling 134 source files to <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/target/classes>
[INFO] -------------------------------------------------------------
[ERROR] COMPILATION ERROR :
[INFO] -------------------------------------------------------------
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/ae/features/cluster/MentionClusterUMLSFeatureExtractor.java>:[14,41] error: cannot find symbol
[ERROR] symbol: class HashableMarkable
location: package org.apache.ctakes.coreference.util
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/eval/EvaluationOfEventCoreference.java>:[1030,53] error: cannot find symbol
[ERROR] symbol: method getPreviousPatientName()
location: variable notes of type PatientNoteStore
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/eval/EvaluationOfEventCoreference.java>:[1076,53] error: cannot find symbol
[INFO] 3 errors
[INFO] -------------------------------------------------------------
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[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ..................................... SUCCESS [4.509s]
[INFO] ctakes-gui-res .................................... SUCCESS [3.822s]
[INFO] Apache cTAKES Resources core ...................... SUCCESS [2.688s]
[INFO] Apache cTAKES common type system .................. SUCCESS [40.156s]
[INFO] Apache cTAKES utils ............................... SUCCESS [3.379s]
[INFO] Apache cTAKES core ................................ SUCCESS [23.005s]
[INFO] ctakes-gui ........................................ SUCCESS [4.524s]
[INFO] Apache cTAKES Resources pos-tagger ................ SUCCESS [2.242s]
[INFO] Apache cTAKES part-of-speech tagger ............... SUCCESS [5.378s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ........ SUCCESS [2.369s]
[INFO] Apache cTAKES chunker ............................. SUCCESS [3.048s]
[INFO] Apache cTAKES document preprocessor ............... SUCCESS [3.654s]
[INFO] Apache cTAKES Resources dictionary-lookup ......... SUCCESS [54.828s]
[INFO] Apache cTAKES dictionary lookup ................... SUCCESS [4.229s]
[INFO] Apache cTAKES context dependent tokenizer ......... SUCCESS [4.562s]
[INFO] Apache cTAKES Resources lvg ....................... SUCCESS [29.002s]
[INFO] Apache cTAKES LVG lexical tools ................... SUCCESS [7.835s]
[INFO] Apache cTAKES Resources ne-contexts ............... SUCCESS [2.322s]
[INFO] Apache cTAKES named entity contexts ............... SUCCESS [4.168s]
[INFO] Apache cTAKES Resources constituency-parser ....... SUCCESS [2.289s]
[INFO] Apache cTAKES Constituency Parser ................. SUCCESS [2.949s]
[INFO] Apache cTAKES Resources coreference ............... SUCCESS [2.223s]
[INFO] Apache cTAKES Resources temporal .................. SUCCESS [2.288s]
[INFO] Apache cTAKES Resources relation-extractor ........ SUCCESS [2.151s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res SUCCESS [3.185s]
[INFO] Apache cTAKES dictionary lookup fast .............. SUCCESS [3.291s]
[INFO] Apache cTAKES Resources assertion ................. SUCCESS [17.310s]
[INFO] Apache cTAKES Resources dependency-parser ......... SUCCESS [2.540s]
[INFO] Apache cTAKES Dependency Parser ................... SUCCESS [37.109s]
[INFO] Apache cTAKES Assertion ........................... SUCCESS [4.943s]
[INFO] ctakes-clinical-pipeline-res ...................... SUCCESS [2.765s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............ SUCCESS [4.963s]
[INFO] Apache cTAKES Relation Extractor .................. SUCCESS [8.675s]
[INFO] Apache cTAKES Temporal Information Extraction ..... SUCCESS [1:25.242s]
[INFO] Apache cTAKES CoReference Resolver ................ FAILURE [4.804s]
[INFO] Apache cTAKES Resources drug-ner .................. SKIPPED
[INFO] Apache cTAKES Drug NER ............................ SKIPPED
[INFO] Apache cTAKES Resources side-effect ............... SKIPPED
[INFO] Apache cTAKES Side Effects ........................ SKIPPED
[INFO] Apache cTAKES Resources smoking-status ............ SKIPPED
[INFO] Apache cTAKES Smoking Status ...................... SKIPPED
[INFO] Apache cTAKES Resources assertion-zoner ........... SKIPPED
[INFO] Apache cTAKES Assertion's zoner ................... SKIPPED
[INFO] ctakes-examples-res ............................... SKIPPED
[INFO] ctakes-examples ................................... SKIPPED
[INFO] Apache cTAKES Resources ctakes-ytex-res ........... SKIPPED
[INFO] Apache cTAKES YTEX ................................ SKIPPED
[INFO] Apache cTAKES YTEX UIMA ........................... SKIPPED
[INFO] Apache cTAKES YTEX Web ............................ SKIPPED
[INFO] Apache cTAKES Distribution ........................ SKIPPED
[INFO] Apache cTAKES Regression-test ..................... SKIPPED
[INFO] Apache cTAKES template filler ..................... SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 7:16.896s
[INFO] Finished at: Wed Nov 08 16:35:01 UTC 2017
[INFO] Final Memory: 73M/631M
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[ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.4:compile (default-compile) on project ctakes-coreference: Compilation failure: Compilation failure:
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/ae/features/cluster/MentionClusterUMLSFeatureExtractor.java>:[14,41] error: cannot find symbol
[ERROR] symbol: class HashableMarkable
[ERROR] location: package org.apache.ctakes.coreference.util
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/eval/EvaluationOfEventCoreference.java>:[1030,53] error: cannot find symbol
[ERROR] symbol: method getPreviousPatientName()
[ERROR] location: variable notes of type PatientNoteStore
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/eval/EvaluationOfEventCoreference.java>:[1076,53] error: cannot find symbol
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-coreference
Sending e-mails to: notifications@ctakes.apache.org timothy.miller@childrens.harvard.edu
channel stopped
Jenkins build is still unstable: ctakes-trunk-compiletest #1118
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1118/display/redirect?page=changes>
Jenkins build is still unstable: ctakes-trunk-compiletest #1117
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1117/display/redirect?page=changes>
Jenkins build is still unstable: ctakes-trunk-compiletest #1116
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1116/display/redirect?page=changes>
Jenkins build is unstable: ctakes-trunk-compiletest #1115
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1115/display/redirect?page=changes>
Build failed in Jenkins: ctakes-trunk-compiletest #1114
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1114/display/redirect?page=changes>
Changes:
[seanfinan] Allow comma-separated semantic group codes in blacklist files.
[seanfinan] Change from deprecated FileLocator.locateFile(..) to getFile(..)
Remove use of deprecated getCasInitializer()
[seanfinan] CTAKES-470 : throw exception (and exit) if piper cannot be loaded. Exceptions saved to log file.
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[...truncated 324.14 KB...]
A ctakes-dictionary-lookup-fast-res/src/main/resources/org/apache
A ctakes-dictionary-lookup-fast-res/src/main/resources/org/apache/ctakes
A ctakes-dictionary-lookup-fast-res/src/main/resources/org/apache/ctakes/dictionary
A ctakes-dictionary-lookup-fast-res/src/main/resources/org/apache/ctakes/dictionary/lookup
A ctakes-dictionary-lookup-fast-res/src/main/resources/org/apache/ctakes/dictionary/lookup/fast
A ctakes-dictionary-lookup-fast-res/src/main/resources/org/apache/ctakes/dictionary/lookup/fast/pipeline
A ctakes-dictionary-lookup-fast-res/src/main/resources/org/apache/ctakes/dictionary/lookup/fast/pipeline/DictionarySubPipe.piper
A ctakes-dictionary-lookup-fast-res/src/main/resources/org/apache/ctakes/dictionary/lookup/fast/example
A ctakes-dictionary-lookup-fast-res/src/main/resources/org/apache/ctakes/dictionary/lookup/fast/example/bsv
A ctakes-dictionary-lookup-fast-res/src/main/resources/org/apache/ctakes/dictionary/lookup/fast/example/bsv/custom_mixed_bsv.bsv
A ctakes-dictionary-lookup-fast-res/src/main/resources/org/apache/ctakes/dictionary/lookup/fast/example/bsv/CustomCuiBsv.xml
A ctakes-dictionary-lookup-fast-res/src/main/resources/org/apache/ctakes/dictionary/lookup/fast/example/bsv/CustomCuiTuiBsv.xml
A ctakes-dictionary-lookup-fast-res/src/main/resources/org/apache/ctakes/dictionary/lookup/fast/example/bsv/CustomCuiTui2Bsv.xml
A ctakes-dictionary-lookup-fast-res/src/main/resources/org/apache/ctakes/dictionary/lookup/fast/example/bsv/custom_cui_bsv.bsv
A ctakes-dictionary-lookup-fast-res/src/main/resources/org/apache/ctakes/dictionary/lookup/fast/example/bsv/custom_cui_tui_bsv.bsv
A ctakes-dictionary-lookup-fast-res/src/main/resources/org/apache/ctakes/dictionary/lookup/fast/example/bsv/custom_tui_bsv.bsv
A ctakes-ne-contexts-res
A ctakes-ne-contexts-res/src
A ctakes-ne-contexts-res/src/test
A ctakes-ne-contexts-res/src/main
A ctakes-ne-contexts-res/src/main/resources
A ctakes-ne-contexts-res/src/main/resources/org
A ctakes-ne-contexts-res/src/main/resources/org/apache
A ctakes-ne-contexts-res/src/main/resources/org/apache/ctakes
A ctakes-ne-contexts-res/src/main/resources/org/apache/ctakes/necontexts
A ctakes-ne-contexts-res/src/main/resources/org/apache/ctakes/necontexts/pipeline
A ctakes-ne-contexts-res/src/main/resources/org/apache/ctakes/necontexts/pipeline/NeContextsSubPipe.piper
A ctakes-ne-contexts-res/src/main/resources/org/apache/ctakes/necontexts/desc
A ctakes-ne-contexts-res/src/main/resources/org/apache/ctakes/necontexts/desc/NegationAnnotator.xml
A ctakes-ne-contexts-res/pom.xml
A ctakes-ne-contexts-res/LICENSE
A ctakes-dependency-parser-res
A ctakes-dependency-parser-res/src
A ctakes-dependency-parser-res/src/test
A ctakes-dependency-parser-res/src/main
A ctakes-dependency-parser-res/src/main/resources
A ctakes-dependency-parser-res/src/main/resources/org
A ctakes-dependency-parser-res/src/main/resources/org/apache
A ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes
A ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency
A ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser
A ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models
A ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/dependency
AU ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/dependency/mayo-en-dep-1.3.0.jar
A ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/dependency/README
A ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/srl
AU ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/srl/mayo-en-srl-1.3.0.jar
A ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/srl/README
AU ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/clearparser_models.jar
A ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/role
AU ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/role/mayo-en-role-1.3.0.jar
A ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/lemmatizer
A ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/lemmatizer/README
AU ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/lemmatizer/dictionary-1.3.1.jar
A ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/pred
AU ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/pred/mayo-en-pred-1.3.0.jar
A ctakes-dependency-parser-res/pom.xml
A ctakes-dependency-parser-res/LICENSE
A ctakes-chunker
A ctakes-chunker/data
A ctakes-chunker/data/chunk
A ctakes-chunker/data/chunk/genia
A ctakes-chunker/data/chunk/genia/genia.opennlp.chunks
A ctakes-chunker/data/chunk/genia/README
A ctakes-chunker/data/chunk/combinations
A ctakes-chunker/data/chunk/ptb
A ctakes-chunker/data/chunk/ptb/README
A ctakes-chunker/data/treebank
A ctakes-chunker/data/treebank/genia
A ctakes-chunker/data/treebank/genia/README
A ctakes-chunker/data/treebank/genia/names-00.txt
A ctakes-chunker/data/treebank/genia/00
A ctakes-chunker/data/treebank/genia/names-01.txt
A ctakes-chunker/data/treebank/genia/01
A ctakes-chunker/pom.xml
A ctakes-chunker/resources
A ctakes-chunker/resources/launch
AU ctakes-chunker/resources/launch/chunker.launch
AU ctakes-chunker/resources/launch/UIMA_CPE_GUI--chunker.launch
AU ctakes-chunker/resources/launch/ChunkAdjusterTests.launch
A ctakes-chunker/README
A ctakes-chunker/ExampleTrainChunker.bat
A ctakes-chunker/desc
A ctakes-chunker/desc/AdjustNounPhraseToIncludeFollowingNP.xml
A ctakes-chunker/desc/AdjustNounPhraseToIncludeFollowingPPNP.xml
A ctakes-chunker/desc/AdjustOPhraseToIncludeFollowingO.xml
A ctakes-chunker/desc/ChunkerAggregate.xml
A ctakes-chunker/desc/ChunkerCPE.xml
A ctakes-chunker/desc/analysis_engine
A ctakes-chunker/desc/ChunkAdjuster.xml
A ctakes-chunker/desc/POSTagger.xml
A ctakes-chunker/desc/AggregateAE.xml
A ctakes-chunker/desc/collection_processing_engine
A ctakes-chunker/desc/Chunker.xml
A ctakes-chunker/desc/test
A ctakes-chunker/desc/test/SimpleSegmentAnnotator.xml
A ctakes-chunker/desc/test/AdjustNounPhraseToIncludeFollowingPPNP.xml
A ctakes-chunker/desc/test/ChunkerAggregate.xml
A ctakes-chunker/desc/test/ChunkerCPE.xml
A ctakes-chunker/desc/test/POSTagger.xml
A ctakes-chunker/desc/test/PhraseTypeChunkerAggregate.xml
A ctakes-chunker/desc/test/Chunker.xml
A ctakes-chunker/desc/test/TokenizerAnnotator.xml
A ctakes-chunker/desc/test/ChunkAdjusterAggregate.xml
A ctakes-chunker/desc/test/ChunkerCpeUsingPosTagDictionary.xml
A ctakes-chunker/desc/SimpleSegmentAnnotator.xml
A ctakes-chunker/LICENSE
A ctakes-chunker/scripts
A ctakes-chunker/scripts/java
A ctakes-chunker/scripts/java/data
A ctakes-chunker/scripts/java/data/chunk
A ctakes-chunker/scripts/java/data/chunk/genia
A ctakes-chunker/scripts/java/data/chunk/genia/Genia2PTB.java
A ctakes-chunker/scripts/java/data/chunk/Chunklink2OpenNLP.java
A ctakes-chunker/scripts/perl
A ctakes-chunker/scripts/perl/README
A ctakes-chunker/scripts/groovy
A ctakes-chunker/scripts/groovy/data
A ctakes-chunker/scripts/groovy/data/chunk
A ctakes-chunker/scripts/groovy/data/chunk/TagReport.groovy
A ctakes-chunker/src
A ctakes-chunker/src/test
A ctakes-chunker/src/test/resources
A ctakes-chunker/src/test/resources/data
A ctakes-chunker/src/test/resources/data/text-files
A ctakes-chunker/src/test/resources/data/text-files/text1.txt
A ctakes-chunker/src/test/resources/data/README
A ctakes-chunker/src/test/resources/data/output
A ctakes-chunker/src/test/resources/data/output/text1.txt.included.used.tag-dictionary.xml
A ctakes-chunker/src/test/resources/data/output/NotesIIST_RTF.DTD
A ctakes-chunker/src/test/resources/data/output/text1.txt.included.xml
A ctakes-chunker/src/test/resources/data/unit-test.opennlp.chunks
A ctakes-chunker/src/test/java
A ctakes-chunker/src/test/java/org
A ctakes-chunker/src/test/java/org/apache
A ctakes-chunker/src/test/java/org/apache/ctakes
A ctakes-chunker/src/test/java/org/apache/ctakes/chunker
A ctakes-chunker/src/test/java/org/apache/ctakes/chunker/ChunkerTests.java
A ctakes-chunker/src/test/java/org/apache/ctakes/chunker/ChunkAdjusterTests.java
A ctakes-chunker/src/main
A ctakes-chunker/src/main/java
A ctakes-chunker/src/main/java/org
A ctakes-chunker/src/main/java/org/apache
A ctakes-chunker/src/main/java/org/apache/ctakes
A ctakes-chunker/src/main/java/org/apache/ctakes/chunker
A ctakes-chunker/src/main/java/org/apache/ctakes/chunker/ae
A ctakes-chunker/src/main/java/org/apache/ctakes/chunker/ae/DefaultChunkCreator.java
A ctakes-chunker/src/main/java/org/apache/ctakes/chunker/ae/PhraseTypeChunkCreator.java
A ctakes-chunker/src/main/java/org/apache/ctakes/chunker/ae/Chunker.java
A ctakes-chunker/src/main/java/org/apache/ctakes/chunker/ae/adjuster
A ctakes-chunker/src/main/java/org/apache/ctakes/chunker/ae/adjuster/ChunkAdjuster.java
A ctakes-chunker/src/main/java/org/apache/ctakes/chunker/ae/ChunkCreator.java
A ctakes-pos-tagger-res
A ctakes-pos-tagger-res/pom.xml
A ctakes-pos-tagger-res/LICENSE
A ctakes-pos-tagger-res/src
A ctakes-pos-tagger-res/src/main
A ctakes-pos-tagger-res/src/main/resources
A ctakes-pos-tagger-res/src/main/resources/org
A ctakes-pos-tagger-res/src/main/resources/org/apache
A ctakes-pos-tagger-res/src/main/resources/org/apache/ctakes
A ctakes-pos-tagger-res/src/main/resources/org/apache/ctakes/postagger
A ctakes-pos-tagger-res/src/main/resources/org/apache/ctakes/postagger/models
AU ctakes-pos-tagger-res/src/main/resources/org/apache/ctakes/postagger/models/mayo-pos.zip
A ctakes-pos-tagger-res/src/main/resources/org/apache/ctakes/postagger/models/README
A ctakes-pos-tagger-res/src/main/resources/org/apache/ctakes/postagger/models/clearnlp
AU ctakes-pos-tagger-res/src/main/resources/org/apache/ctakes/postagger/models/clearnlp/mayo-en-pos-1.3.0.jar
A ctakes-pos-tagger-res/src/test
AU KEYS
U .
At revision 1813319
Parsing POMs
Modules changed, recalculating dependency graph
ERROR: Processing failed due to a bug in the code. Please report this to the issue tracker (https://jenkins.io/redirect/report-an-issue).
hudson.remoting.RequestAbortedException: hudson.remoting.Channel$OrderlyShutdown: hudson.remoting.ProxyException: java.util.concurrent.TimeoutException: Ping started at 1508950397103 hasn't completed by 1508950637134
at hudson.remoting.Request.abort(Request.java:307)
at hudson.remoting.Channel.terminate(Channel.java:905)
at hudson.remoting.Channel$CloseCommand.execute(Channel.java:1138)
at hudson.remoting.Channel$1.handle(Channel.java:535)
at hudson.remoting.SynchronousCommandTransport$ReaderThread.run(SynchronousCommandTransport.java:83)
at ......remote call to ubuntu-1(Native Method)
at hudson.remoting.Channel.attachCallSiteStackTrace(Channel.java:1554)
at hudson.remoting.Request.call(Request.java:172)
at hudson.remoting.Channel.call(Channel.java:838)
at hudson.FilePath.act(FilePath.java:987)
at hudson.FilePath.act(FilePath.java:976)
at hudson.FilePath.exists(FilePath.java:1441)
at hudson.maven.MavenModuleSetBuild$MavenModuleSetBuildExecution.doRun(MavenModuleSetBuild.java:745)
at hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:496)
at hudson.model.Run.execute(Run.java:1737)
at hudson.maven.MavenModuleSetBuild.run(MavenModuleSetBuild.java:543)
at hudson.model.ResourceController.execute(ResourceController.java:97)
at hudson.model.Executor.run(Executor.java:419)
Caused by: hudson.remoting.Channel$OrderlyShutdown: hudson.remoting.ProxyException: java.util.concurrent.TimeoutException: Ping started at 1508950397103 hasn't completed by 1508950637134
at hudson.remoting.Channel$CloseCommand.execute(Channel.java:1138)
at hudson.remoting.Channel$1.handle(Channel.java:535)
at hudson.remoting.SynchronousCommandTransport$ReaderThread.run(SynchronousCommandTransport.java:83)
Caused by: Command close created at
at hudson.remoting.Command.<init>(Command.java:60)
at hudson.remoting.Channel$CloseCommand.<init>(Channel.java:1132)
at hudson.remoting.Channel$CloseCommand.<init>(Channel.java:1130)
at hudson.remoting.Channel.close(Channel.java:1290)
at hudson.slaves.ChannelPinger$1.onDead(ChannelPinger.java:180)
at hudson.remoting.PingThread.ping(PingThread.java:130)
at hudson.remoting.PingThread.run(PingThread.java:86)
Caused by: hudson.remoting.ProxyException: java.util.concurrent.TimeoutException: Ping started at 1508950397103 hasn't completed by 1508950637134
... 2 more
project=hudson.maven.MavenModuleSet@1f22e949[ctakes-trunk-compiletest]
project.getModules()=[hudson.maven.MavenModule@5102d47c[ctakes-trunk-compiletest/org.apache.ctakes:ctakes][ctakes-trunk-compiletest/org.apache.ctakes:ctakes][relativePath:], hudson.maven.MavenModule@12f62c94[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-assertion][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-assertion][relativePath:ctakes-assertion], hudson.maven.MavenModule@3f57f1a0[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-assertion-res][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-assertion-res][relativePath:ctakes-assertion-res], hudson.maven.MavenModule@7094ade0[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-assertion-zoner][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-assertion-zoner][relativePath:ctakes-assertion-zoner], hudson.maven.MavenModule@5768cbe7[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-assertion-zoner-res][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-assertion-zoner-res][relativePath:ctakes-assertion-zoner-res], hudson.maven.MavenModule@844b590[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-chunker][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-chunker][relativePath:ctakes-chunker], hudson.maven.MavenModule@7b5af825[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-chunker-res][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-chunker-res][relativePath:ctakes-chunker-res], hudson.maven.MavenModule@2c31245a[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-clinical-pipeline][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-clinical-pipeline][relativePath:ctakes-clinical-pipeline], hudson.maven.MavenModule@60e30d51[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-clinical-pipeline-res][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-clinical-pipeline-res][relativePath:ctakes-clinical-pipeline-res], hudson.maven.MavenModule@39c443a6[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-constituency-parser][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-constituency-parser][relativePath:ctakes-constituency-parser], hudson.maven.MavenModule@3f47934d[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-constituency-parser-res][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-constituency-parser-res][relativePath:ctakes-constituency-parser-res], hudson.maven.MavenModule@9293931[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-context-tokenizer][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-context-tokenizer][relativePath:ctakes-context-tokenizer], hudson.maven.MavenModule@54e37dd8[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-core][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-core][relativePath:ctakes-core], hudson.maven.MavenModule@41e97a61[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-core-res][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-core-res][relativePath:ctakes-core-res], hudson.maven.MavenModule@2b63a6ef[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-coreference][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-coreference][relativePath:ctakes-coreference], hudson.maven.MavenModule@29b3d733[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-coreference-res][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-coreference-res][relativePath:ctakes-coreference-res], hudson.maven.MavenModule@5a44851a[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-dependency-parser][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-dependency-parser][relativePath:ctakes-dependency-parser], hudson.maven.MavenModule@3d9a9e5a[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-dependency-parser-res][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-dependency-parser-res][relativePath:ctakes-dependency-parser-res], hudson.maven.MavenModule@7380ffd2[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-dictionary-gui][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-dictionary-gui][relativePath:ctakes-dictionary-gui], hudson.maven.MavenModule@37881a1c[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-dictionary-lookup][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-dictionary-lookup][relativePath:ctakes-dictionary-lookup], hudson.maven.MavenModule@4b2c7ec8[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-dictionary-lookup-fast][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-dictionary-lookup-fast][relativePath:ctakes-dictionary-lookup-fast], hudson.maven.MavenModule@87fcf0b[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-dictionary-lookup-fast-res][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-dictionary-lookup-fast-res][relativePath:ctakes-dictionary-lookup-fast-res], hudson.maven.MavenModule@44ec51b[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-dictionary-lookup-res][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-dictionary-lookup-res][relativePath:ctakes-dictionary-lookup-res], hudson.maven.MavenModule@2ff75d2a[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-dictionary-lookup2][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-dictionary-lookup2][relativePath:ctakes-dictionary-lookup2], hudson.maven.MavenModule@7f2bcc17[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-dictionary-lookup2-res][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-dictionary-lookup2-res][relativePath:ctakes-dictionary-lookup2-res], hudson.maven.MavenModule@33655734[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-distribution][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-distribution][relativePath:ctakes-distribution], hudson.maven.MavenModule@dc51c7e[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-drug-ner][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-drug-ner][relativePath:ctakes-drug-ner], hudson.maven.MavenModule@63c4d63c[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-drug-ner-res][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-drug-ner-res][relativePath:ctakes-drug-ner-res], hudson.maven.MavenModule@339526b[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-examples][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-examples][relativePath:ctakes-examples], hudson.maven.MavenModule@4fb7162a[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-examples-res][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-examples-res][relativePath:ctakes-examples-res], hudson.maven.MavenModule@7afa80a9[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-gui][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-gui][relativePath:ctakes-gui], hudson.maven.MavenModule@19c2aa9e[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-gui-res][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-gui-res][relativePath:ctakes-gui-res], hudson.maven.MavenModule@4bf7b43a[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-lvg][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-lvg][relativePath:ctakes-lvg], hudson.maven.MavenModule@57450d8d[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-lvg-res][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-lvg-res][relativePath:ctakes-lvg-res], hudson.maven.MavenModule@5d87e279[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-ne-contexts][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-ne-contexts][relativePath:ctakes-ne-contexts], hudson.maven.MavenModule@7c8a2c23[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-ne-contexts-res][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-ne-contexts-res][relativePath:ctakes-ne-contexts-res], hudson.maven.MavenModule@b811cbe[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-pos-tagger][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-pos-tagger][relativePath:ctakes-pos-tagger], hudson.maven.MavenModule@68b772b5[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-pos-tagger-res][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-pos-tagger-res][relativePath:ctakes-pos-tagger-res], hudson.maven.MavenModule@1a38a130[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-preprocessor][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-preprocessor][relativePath:ctakes-preprocessor], hudson.maven.MavenModule@204b5c90[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-regression-test][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-regression-test][relativePath:ctakes-regression-test], hudson.maven.MavenModule@183c18b9[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-relation-extractor][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-relation-extractor][relativePath:ctakes-relation-extractor], hudson.maven.MavenModule@17daf7cf[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-relation-extractor-res][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-relation-extractor-res][relativePath:ctakes-relation-extractor-res], hudson.maven.MavenModule@4aff4058[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-side-effect][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-side-effect][relativePath:ctakes-side-effect], hudson.maven.MavenModule@53200abc[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-side-effect-res][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-side-effect-res][relativePath:ctakes-side-effect-res], hudson.maven.MavenModule@1e0da563[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-smoking-status][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-smoking-status][relativePath:ctakes-smoking-status], hudson.maven.MavenModule@4ee6e554[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-smoking-status-res][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-smoking-status-res][relativePath:ctakes-smoking-status-res], hudson.maven.MavenModule@4ac3715e[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-template-filler][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-template-filler][relativePath:ctakes-template-filler], hudson.maven.MavenModule@6fb5c471[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-temporal][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-temporal][relativePath:ctakes-temporal], hudson.maven.MavenModule@443e5cf5[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-temporal-res][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-temporal-res][relativePath:ctakes-temporal-res], hudson.maven.MavenModule@6cc9237d[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-type-system][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-type-system][relativePath:ctakes-type-system], hudson.maven.MavenModule@325042d8[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-utils][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-utils][relativePath:ctakes-utils], hudson.maven.MavenModule@27968bcf[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-ytex][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-ytex][relativePath:ctakes-ytex], hudson.maven.MavenModule@17bfa21b[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-ytex-res][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-ytex-res][relativePath:ctakes-ytex-res], hudson.maven.MavenModule@4c745771[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-ytex-uima][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-ytex-uima][relativePath:ctakes-ytex-uima], hudson.maven.MavenModule@2211a7fa[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-ytex-web][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-ytex-web][relativePath:ctakes-ytex-web]]
project.getRootModule()=hudson.maven.MavenModule@5102d47c[ctakes-trunk-compiletest/org.apache.ctakes:ctakes][ctakes-trunk-compiletest/org.apache.ctakes:ctakes][relativePath:]
FATAL: hudson.remoting.Channel$OrderlyShutdown: hudson.remoting.ProxyException: java.util.concurrent.TimeoutException: Ping started at 1508950397103 hasn't completed by 1508950637134
hudson.remoting.ProxyException: java.util.concurrent.TimeoutException: Ping started at 1508950397103 hasn't completed by 1508950637134
Caused: Command close created at
at hudson.remoting.Command.<init>(Command.java:60)
at hudson.remoting.Channel$CloseCommand.<init>(Channel.java:1132)
at hudson.remoting.Channel$CloseCommand.<init>(Channel.java:1130)
at hudson.remoting.Channel.close(Channel.java:1290)
at hudson.slaves.ChannelPinger$1.onDead(ChannelPinger.java:180)
at hudson.remoting.PingThread.ping(PingThread.java:130)
at hudson.remoting.PingThread.run(PingThread.java:86)
Caused: hudson.remoting.Channel$OrderlyShutdown: hudson.remoting.ProxyException: java.util.concurrent.TimeoutException: Ping started at 1508950397103 hasn't completed by 1508950637134
at hudson.remoting.Channel$CloseCommand.execute(Channel.java:1138)
at hudson.remoting.Channel$1.handle(Channel.java:535)
at hudson.remoting.SynchronousCommandTransport$ReaderThread.run(SynchronousCommandTransport.java:83)
Caused: hudson.remoting.RequestAbortedException
at hudson.remoting.Request.abort(Request.java:307)
at hudson.remoting.Channel.terminate(Channel.java:905)
at hudson.remoting.Channel$CloseCommand.execute(Channel.java:1138)
at hudson.remoting.Channel$1.handle(Channel.java:535)
at hudson.remoting.SynchronousCommandTransport$ReaderThread.run(SynchronousCommandTransport.java:83)
at ......remote call to ubuntu-1(Native Method)
at hudson.remoting.Channel.attachCallSiteStackTrace(Channel.java:1554)
at hudson.remoting.Request.call(Request.java:172)
at hudson.remoting.Channel.call(Channel.java:838)
at hudson.FilePath.act(FilePath.java:987)
at hudson.FilePath.act(FilePath.java:976)
at hudson.FilePath.exists(FilePath.java:1441)
at hudson.maven.MavenModuleSetBuild$MavenModuleSetBuildExecution.doRun(MavenModuleSetBuild.java:745)
at hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:496)
at hudson.model.Run.execute(Run.java:1737)
at hudson.maven.MavenModuleSetBuild.run(MavenModuleSetBuild.java:543)
at hudson.model.ResourceController.execute(ResourceController.java:97)
at hudson.model.Executor.run(Executor.java:419)
ERROR: ubuntu-1 is offline; cannot locate JDK 1.8 (latest)
ERROR: ubuntu-1 is offline; cannot locate Maven 3.0.5
ERROR: ubuntu-1 is offline; cannot locate JDK 1.8 (latest)
ERROR: ubuntu-1 is offline; cannot locate Maven 3.0.5
Jenkins build is still unstable: ctakes-trunk-compiletest #1113
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1113/display/redirect?page=changes>
Jenkins build is still unstable: ctakes-trunk-compiletest #1112
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1112/display/redirect?page=changes>
Jenkins build is still unstable: ctakes-trunk-compiletest #1111
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1111/display/redirect?page=changes>
Jenkins build is still unstable: ctakes-trunk-compiletest #1110
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1110/display/redirect?page=changes>
Jenkins build is still unstable: ctakes-trunk-compiletest #1109
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1109/display/redirect?page=changes>
Jenkins build is still unstable: ctakes-trunk-compiletest #1108
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1108/display/redirect?page=changes>
Jenkins build is still unstable: ctakes-trunk-compiletest #1107
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1107/display/redirect?page=changes>
Jenkins build is still unstable: ctakes-trunk-compiletest #1106
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1106/display/redirect?page=changes>
Jenkins build is still unstable: ctakes-trunk-compiletest #1105
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1105/display/redirect?page=changes>