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Posted to issues@hbase.apache.org by GitBox <gi...@apache.org> on 2021/11/03 23:29:56 UTC

[GitHub] [hbase] joshelser commented on a change in pull request #3786: HBASE-26271: Cleanup the broken store files under data directory

joshelser commented on a change in pull request #3786:
URL: https://github.com/apache/hbase/pull/3786#discussion_r742417329



##########
File path: hbase-server/src/main/java/org/apache/hadoop/hbase/regionserver/StoreEngine.java
##########
@@ -514,4 +514,12 @@ public void removeCompactedFiles(Collection<HStoreFile> compactedFiles) {
       throw new IOException("Unable to load configured store engine '" + className + "'", e);
     }
   }
+
+  public boolean requireWritingToTmpDirFirst() {

Review comment:
       nit: javadoc

##########
File path: hbase-server/src/main/java/org/apache/hadoop/hbase/regionserver/BrokenStoreFileCleaner.java
##########
@@ -0,0 +1,191 @@
+/**
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ * <p>
+ * http://www.apache.org/licenses/LICENSE-2.0
+ * <p>
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+package org.apache.hadoop.hbase.regionserver;
+
+import org.apache.commons.lang3.RandomUtils;
+import org.apache.hadoop.conf.Configuration;
+import org.apache.hadoop.fs.FileStatus;
+import org.apache.hadoop.fs.Path;
+import org.apache.hadoop.hbase.ScheduledChore;
+import org.apache.hadoop.hbase.Stoppable;
+import org.apache.hadoop.hbase.io.HFileLink;
+import org.apache.hadoop.hbase.util.EnvironmentEdgeManager;
+import org.apache.hadoop.ipc.RemoteException;
+import org.apache.yetus.audience.InterfaceAudience;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+import java.io.IOException;
+import java.util.Arrays;
+import java.util.List;
+import java.util.concurrent.atomic.AtomicBoolean;
+import java.util.concurrent.atomic.AtomicLong;
+
+/**
+ * This Chore, every time it runs, will clear the unsused HFiles in the data
+ * folder.
+ */
+@InterfaceAudience.Private public class BrokenStoreFileCleaner extends ScheduledChore {

Review comment:
       ```suggestion
   @InterfaceAudience.Private
   public class BrokenStoreFileCleaner extends ScheduledChore {
   ```

##########
File path: hbase-server/src/main/java/org/apache/hadoop/hbase/regionserver/compactions/DefaultCompactor.java
##########
@@ -72,13 +72,20 @@ public StoreFileWriter createWriter(InternalScanner scanner,
   }
 
   @Override
+  protected void abortWriter() throws IOException {
+    abortWriter(writer);
+  }
+
   protected void abortWriter(StoreFileWriter writer) throws IOException {
     Path leftoverFile = writer.getPath();
     try {
       writer.close();
     } catch (IOException e) {
       LOG.warn("Failed to close the writer after an unfinished compaction.", e);
     }
+    finally {

Review comment:
       ```suggestion
       } finally {
   ```

##########
File path: hbase-server/src/main/java/org/apache/hadoop/hbase/regionserver/StoreEngine.java
##########
@@ -514,4 +514,12 @@ public void removeCompactedFiles(Collection<HStoreFile> compactedFiles) {
       throw new IOException("Unable to load configured store engine '" + className + "'", e);
     }
   }
+
+  public boolean requireWritingToTmpDirFirst() {
+    return storeFileTracker.requireWritingToTmpDirFirst();
+  }
+
+  public void resetCompactionWriter(){

Review comment:
       And a javadoc comment here as this is critical to ensuring that we know which files are sane to be deleted, please. Touch on `doCompaction` calling this.

##########
File path: hbase-server/src/main/java/org/apache/hadoop/hbase/regionserver/compactions/Compactor.java
##########
@@ -537,4 +546,24 @@ protected InternalScanner createScanner(HStore store, ScanInfo scanInfo,
     return new StoreScanner(store, scanInfo, scanners, smallestReadPoint, earliestPutTs,
         dropDeletesFromRow, dropDeletesToRow);
   }
+
+  public List<Path> getCompactionTargets(){
+    if (writer == null){
+      return Collections.emptyList();
+    }
+    synchronized (writer){
+      if (writer instanceof StoreFileWriter){
+        return Arrays.asList(((StoreFileWriter)writer).getPath());
+      }
+      return ((AbstractMultiFileWriter)writer).writers().stream().map(sfw -> sfw.getPath()).collect(
+        Collectors.toList());
+    }
+  }
+
+  /**
+   * Reset the Writer when the new storefiles were successfully added
+   */
+  public  void resetWriter(){

Review comment:
       ```suggestion
     public void resetWriter() {
   ```

##########
File path: hbase-server/src/main/java/org/apache/hadoop/hbase/regionserver/AbstractMultiFileWriter.java
##########
@@ -110,7 +110,7 @@ public void init(StoreScanner sourceScanner, WriterFactory factory) {
     return paths;
   }
 
-  protected abstract Collection<StoreFileWriter> writers();
+  public abstract Collection<StoreFileWriter> writers();

Review comment:
       nit: should have Javadoc on a public method.

##########
File path: hbase-server/src/main/java/org/apache/hadoop/hbase/regionserver/HStore.java
##########
@@ -1159,6 +1159,8 @@ public void deleteChangedReaderObserver(ChangedReadersObserver o) {
       }
     }
     replaceStoreFiles(filesToCompact, sfs, true);
+    storeEngine.resetCompactionWriter();

Review comment:
       Leave a big fat comment here as this is critical to the correctness of the BrokenStoreFileCleanerChore.

##########
File path: hbase-server/src/main/java/org/apache/hadoop/hbase/regionserver/BrokenStoreFileCleaner.java
##########
@@ -0,0 +1,191 @@
+/**
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ * <p>
+ * http://www.apache.org/licenses/LICENSE-2.0
+ * <p>
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+package org.apache.hadoop.hbase.regionserver;
+
+import org.apache.commons.lang3.RandomUtils;
+import org.apache.hadoop.conf.Configuration;
+import org.apache.hadoop.fs.FileStatus;
+import org.apache.hadoop.fs.Path;
+import org.apache.hadoop.hbase.ScheduledChore;
+import org.apache.hadoop.hbase.Stoppable;
+import org.apache.hadoop.hbase.io.HFileLink;
+import org.apache.hadoop.hbase.util.EnvironmentEdgeManager;
+import org.apache.hadoop.ipc.RemoteException;
+import org.apache.yetus.audience.InterfaceAudience;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+import java.io.IOException;
+import java.util.Arrays;
+import java.util.List;
+import java.util.concurrent.atomic.AtomicBoolean;
+import java.util.concurrent.atomic.AtomicLong;
+
+/**
+ * This Chore, every time it runs, will clear the unsused HFiles in the data
+ * folder.
+ */
+@InterfaceAudience.Private public class BrokenStoreFileCleaner extends ScheduledChore {
+  private static final Logger LOG = LoggerFactory.getLogger(BrokenStoreFileCleaner.class);
+  public static final String BROKEN_STOREFILE_CLEANER_ENABLED =
+      "hbase.region.broken.storefilecleaner.enabled";
+  public static final boolean DEFAULT_BROKEN_STOREFILE_CLEANER_ENABLED = false;
+  public static final String BROKEN_STOREFILE_CLEANER_TTL =
+      "hbase.region.broken.storefilecleaner.ttl";
+  public static final long DEFAULT_BROKEN_STOREFILE_CLEANER_TTL = 1000 * 60 * 60 * 12; //12h
+  public static final String BROKEN_STOREFILE_CLEANER_DELAY =
+      "hbase.region.broken.storefilecleaner.delay";
+  public static final int DEFAULT_BROKEN_STOREFILE_CLEANER_DELAY = 1000 * 60 * 60 * 2; //2h
+  public static final String BROKEN_STOREFILE_CLEANER_DELAY_JITTER =
+      "hbase.region.broken.storefilecleaner.delay.jitter";
+  public static final double DEFAULT_BROKEN_STOREFILE_CLEANER_DELAY_JITTER = 0.25D;
+  public static final String BROKEN_STOREFILE_CLEANER_PERIOD =
+      "hbase.region.broken.storefilecleaner.period";
+  public static final int DEFAULT_BROKEN_STOREFILE_CLEANER_PERIOD = 1000 * 60 * 60 * 6; //6h
+
+  private HRegionServer regionServer;
+  private final AtomicBoolean enabled = new AtomicBoolean(true);
+  private long ttl;
+
+  public BrokenStoreFileCleaner(final int delay, final int period, final Stoppable stopper, Configuration conf,
+      HRegionServer regionServer) {
+    super("BrokenStoreFileCleaner", stopper, period, delay);
+    this.regionServer = regionServer;
+    setEnabled(conf.getBoolean(BROKEN_STOREFILE_CLEANER_ENABLED, DEFAULT_BROKEN_STOREFILE_CLEANER_ENABLED));
+    ttl = conf.getLong(BROKEN_STOREFILE_CLEANER_TTL, DEFAULT_BROKEN_STOREFILE_CLEANER_TTL);
+  }
+
+  public boolean setEnabled(final boolean enabled) {
+    return this.enabled.getAndSet(enabled);
+  }
+
+  public boolean getEnabled() {
+    return this.enabled.get();
+  }
+
+  @InterfaceAudience.Private
+  @Override public void chore() {
+    if (getEnabled()) {
+      long start = EnvironmentEdgeManager.currentTime();
+      AtomicLong deletedFiles = new AtomicLong(0);
+      AtomicLong failedDeletes = new AtomicLong(0);
+      for (HRegion region : regionServer.getRegions()) {
+        for (HStore store : region.getStores()) {
+          //only do cleanup in stores not using tmp directories
+          if (store.getStoreEngine().requireWritingToTmpDirFirst()) {
+            continue;
+          }
+          Path storePath =
+              new Path(region.getRegionFileSystem().getRegionDir(), store.getColumnFamilyName());
+
+          try {
+            List<FileStatus> fsStoreFiles = Arrays.asList(region.getRegionFileSystem().fs.listStatus(storePath));
+            fsStoreFiles.forEach(file -> cleanFileIfNeeded(file, store, deletedFiles, failedDeletes));
+          } catch (IOException e) {
+            LOG.warn("Failed to list files in {}, cleanup is skipped there",storePath);
+            continue;
+          }
+        }
+      }
+      LOG.debug(
+        "BrokenStoreFileCleaner on {} run for: {}ms. It deleted {} files and tried but failed to delete {}",
+        regionServer.getServerName().getServerName(), EnvironmentEdgeManager.currentTime() - start,
+        deletedFiles.get(), failedDeletes.get());
+    } else {
+      LOG.trace("Broken storefile Cleaner chore disabled! Not cleaning.");
+    }
+  }
+
+  private void cleanFileIfNeeded(FileStatus file, HStore store,
+    AtomicLong deletedFiles, AtomicLong failedDeletes) {
+    if(file.isDirectory()){
+      LOG.trace("This is a Directory {}, skip cleanup", file.getPath());
+      return;
+    }
+
+    if(!validate(file.getPath())){
+      LOG.trace("Invalid file {}, skip cleanup", file.getPath());
+      return;
+    }
+
+    if(!isOldEnough(file)){
+      LOG.trace("Fresh file {}, skip cleanup", file.getPath());
+      return;
+    }
+
+    if(isActiveStorefile(file, store)){
+      LOG.trace("Actively used storefile file {}, skip cleanup", file.getPath());
+      return;
+    }
+
+    if(isCompactedFile(file, store)){
+      LOG.trace("Cleanup is done by a different chore for file {}, skip cleanup", file.getPath());
+      return;
+    }
+
+    if(isCompactingFile(file, store)){
+      LOG.trace("The file is the result of an ongoing compaction {}, skip cleanup", file.getPath());
+      return;
+    }
+
+    deleteFile(file, store, deletedFiles, failedDeletes);
+  }
+
+  private boolean isCompactingFile(FileStatus file, HStore store) {
+    return store.getStoreEngine().getCompactor().getCompactionTargets().contains(file.getPath());
+  }
+
+  private boolean isCompactedFile(FileStatus file, HStore store) {
+    return store.getStoreEngine().getStoreFileManager().getCompactedfiles().stream().anyMatch(sf -> sf.getPath().equals(file.getPath()));
+  }
+
+  private boolean isActiveStorefile(FileStatus file, HStore store) {
+    return store.getStoreEngine().getStoreFileManager().getStorefiles().stream().anyMatch(sf -> sf.getPath().equals(file.getPath()));
+  }
+
+  boolean validate(Path file) {
+    if (HFileLink.isBackReferencesDir(file) || HFileLink.isBackReferencesDir(file.getParent())) {
+      return true;
+    }
+    return StoreFileInfo.validateStoreFileName(file.getName());
+  }
+
+  boolean isOldEnough(FileStatus file){
+    return file.getModificationTime() + ttl < System.currentTimeMillis();

Review comment:
       ```suggestion
       return file.getModificationTime() + ttl < EnvironmentEdgeManager.currentTime();
   ```

##########
File path: hbase-server/src/main/java/org/apache/hadoop/hbase/regionserver/BrokenStoreFileCleaner.java
##########
@@ -0,0 +1,191 @@
+/**
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ * <p>
+ * http://www.apache.org/licenses/LICENSE-2.0
+ * <p>
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+package org.apache.hadoop.hbase.regionserver;
+
+import org.apache.commons.lang3.RandomUtils;
+import org.apache.hadoop.conf.Configuration;
+import org.apache.hadoop.fs.FileStatus;
+import org.apache.hadoop.fs.Path;
+import org.apache.hadoop.hbase.ScheduledChore;
+import org.apache.hadoop.hbase.Stoppable;
+import org.apache.hadoop.hbase.io.HFileLink;
+import org.apache.hadoop.hbase.util.EnvironmentEdgeManager;
+import org.apache.hadoop.ipc.RemoteException;
+import org.apache.yetus.audience.InterfaceAudience;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+import java.io.IOException;
+import java.util.Arrays;
+import java.util.List;
+import java.util.concurrent.atomic.AtomicBoolean;
+import java.util.concurrent.atomic.AtomicLong;
+
+/**
+ * This Chore, every time it runs, will clear the unsused HFiles in the data
+ * folder.
+ */
+@InterfaceAudience.Private public class BrokenStoreFileCleaner extends ScheduledChore {
+  private static final Logger LOG = LoggerFactory.getLogger(BrokenStoreFileCleaner.class);
+  public static final String BROKEN_STOREFILE_CLEANER_ENABLED =
+      "hbase.region.broken.storefilecleaner.enabled";
+  public static final boolean DEFAULT_BROKEN_STOREFILE_CLEANER_ENABLED = false;
+  public static final String BROKEN_STOREFILE_CLEANER_TTL =
+      "hbase.region.broken.storefilecleaner.ttl";
+  public static final long DEFAULT_BROKEN_STOREFILE_CLEANER_TTL = 1000 * 60 * 60 * 12; //12h
+  public static final String BROKEN_STOREFILE_CLEANER_DELAY =
+      "hbase.region.broken.storefilecleaner.delay";
+  public static final int DEFAULT_BROKEN_STOREFILE_CLEANER_DELAY = 1000 * 60 * 60 * 2; //2h
+  public static final String BROKEN_STOREFILE_CLEANER_DELAY_JITTER =
+      "hbase.region.broken.storefilecleaner.delay.jitter";
+  public static final double DEFAULT_BROKEN_STOREFILE_CLEANER_DELAY_JITTER = 0.25D;
+  public static final String BROKEN_STOREFILE_CLEANER_PERIOD =
+      "hbase.region.broken.storefilecleaner.period";
+  public static final int DEFAULT_BROKEN_STOREFILE_CLEANER_PERIOD = 1000 * 60 * 60 * 6; //6h
+
+  private HRegionServer regionServer;
+  private final AtomicBoolean enabled = new AtomicBoolean(true);
+  private long ttl;

Review comment:
       nit: `fileTtl`. It wasn't clear to me that this was the minimum age of the file before we'll actually clean it.

##########
File path: hbase-server/src/main/java/org/apache/hadoop/hbase/regionserver/compactions/Compactor.java
##########
@@ -348,8 +353,13 @@ private InternalScanner postCompactScannerOpen(CompactionRequestImpl request, Sc
         smallestReadPoint = Math.min(fd.minSeqIdToKeep, smallestReadPoint);
         cleanSeqId = true;
       }
+      if (writer != null){
+        LOG.warn("Writer exists when it should not: " + getCompactionTargets().stream()
+          .map(n -> n.toString())
+          .collect(Collectors.joining(", ", "{ ", " }")));

Review comment:
       This is a straight-up codebug, right? If we happen to have a non-null writer here, what's the implication on correctness?

##########
File path: hbase-server/src/main/java/org/apache/hadoop/hbase/regionserver/compactions/Compactor.java
##########
@@ -537,4 +547,17 @@ protected InternalScanner createScanner(HStore store, ScanInfo scanInfo,
     return new StoreScanner(store, scanInfo, scanners, smallestReadPoint, earliestPutTs,
         dropDeletesFromRow, dropDeletesToRow);
   }
+
+  public List<Path> getCompactionTargets(){
+    if (writer == null){

Review comment:
       I didn't see the original implementation, but agree with Duo and Wellington that the current state seems reasonable.

##########
File path: hbase-server/src/test/java/org/apache/hadoop/hbase/regionserver/TestBrokenStoreFileCleaner.java
##########
@@ -0,0 +1,180 @@
+/**
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ *
+ *     http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+package org.apache.hadoop.hbase.regionserver;
+
+import org.apache.hadoop.fs.FSDataOutputStream;
+import org.apache.hadoop.fs.Path;
+import org.apache.hadoop.hbase.HBaseClassTestRule;
+import org.apache.hadoop.hbase.HBaseTestingUtil;
+import org.apache.hadoop.hbase.ServerName;
+import org.apache.hadoop.hbase.TableName;
+import org.apache.hadoop.hbase.client.CompactType;
+import org.apache.hadoop.hbase.client.Put;
+import org.apache.hadoop.hbase.client.Table;
+import org.apache.hadoop.hbase.regionserver.storefiletracker.StoreFileTrackerFactory;
+import org.apache.hadoop.hbase.testclassification.MediumTests;
+import org.apache.hadoop.hbase.testclassification.RegionServerTests;
+import org.apache.hadoop.hbase.util.Bytes;
+import org.junit.After;
+import org.junit.Before;
+import org.junit.ClassRule;
+import org.junit.Test;
+import org.junit.experimental.categories.Category;
+import java.io.IOException;
+import static org.junit.Assert.assertEquals;
+import static org.junit.Assert.assertFalse;
+import static org.junit.Assert.assertTrue;
+
+@Category({ MediumTests.class, RegionServerTests.class })
+public class TestBrokenStoreFileCleaner {
+
+  @ClassRule
+  public static final HBaseClassTestRule CLASS_RULE =
+      HBaseClassTestRule.forClass(TestBrokenStoreFileCleaner.class);
+
+  private final HBaseTestingUtil testUtil = new HBaseTestingUtil();
+  private final static byte[] fam = Bytes.toBytes("cf_1");
+  private final static byte[] qual1 = Bytes.toBytes("qf_1");
+  private final static byte[] val = Bytes.toBytes("val");
+  private final static  String junkFileName = "409fad9a751c4e8c86d7f32581bdc156";
+  TableName tableName;
+
+
+  @Before
+  public void setUp() throws Exception {
+    testUtil.getConfiguration().set(StoreFileTrackerFactory.TRACKER_IMPL, "org.apache.hadoop.hbase.regionserver.storefiletracker.FileBasedStoreFileTracker");
+    testUtil.getConfiguration().set(BrokenStoreFileCleaner.BROKEN_STOREFILE_CLEANER_ENABLED, "true");
+    testUtil.getConfiguration().set(BrokenStoreFileCleaner.BROKEN_STOREFILE_CLEANER_TTL, "0");

Review comment:
       How about a test to validate that the TTL works?

##########
File path: hbase-server/src/test/java/org/apache/hadoop/hbase/regionserver/TestBrokenStoreFileCleaner.java
##########
@@ -0,0 +1,180 @@
+/**
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ *
+ *     http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+package org.apache.hadoop.hbase.regionserver;
+
+import org.apache.hadoop.fs.FSDataOutputStream;
+import org.apache.hadoop.fs.Path;
+import org.apache.hadoop.hbase.HBaseClassTestRule;
+import org.apache.hadoop.hbase.HBaseTestingUtil;
+import org.apache.hadoop.hbase.ServerName;
+import org.apache.hadoop.hbase.TableName;
+import org.apache.hadoop.hbase.client.CompactType;
+import org.apache.hadoop.hbase.client.Put;
+import org.apache.hadoop.hbase.client.Table;
+import org.apache.hadoop.hbase.regionserver.storefiletracker.StoreFileTrackerFactory;
+import org.apache.hadoop.hbase.testclassification.MediumTests;
+import org.apache.hadoop.hbase.testclassification.RegionServerTests;
+import org.apache.hadoop.hbase.util.Bytes;
+import org.junit.After;
+import org.junit.Before;
+import org.junit.ClassRule;
+import org.junit.Test;
+import org.junit.experimental.categories.Category;
+import java.io.IOException;
+import static org.junit.Assert.assertEquals;
+import static org.junit.Assert.assertFalse;
+import static org.junit.Assert.assertTrue;
+
+@Category({ MediumTests.class, RegionServerTests.class })
+public class TestBrokenStoreFileCleaner {
+
+  @ClassRule
+  public static final HBaseClassTestRule CLASS_RULE =
+      HBaseClassTestRule.forClass(TestBrokenStoreFileCleaner.class);
+
+  private final HBaseTestingUtil testUtil = new HBaseTestingUtil();
+  private final static byte[] fam = Bytes.toBytes("cf_1");
+  private final static byte[] qual1 = Bytes.toBytes("qf_1");
+  private final static byte[] val = Bytes.toBytes("val");
+  private final static  String junkFileName = "409fad9a751c4e8c86d7f32581bdc156";
+  TableName tableName;
+
+
+  @Before
+  public void setUp() throws Exception {
+    testUtil.getConfiguration().set(StoreFileTrackerFactory.TRACKER_IMPL, "org.apache.hadoop.hbase.regionserver.storefiletracker.FileBasedStoreFileTracker");
+    testUtil.getConfiguration().set(BrokenStoreFileCleaner.BROKEN_STOREFILE_CLEANER_ENABLED, "true");
+    testUtil.getConfiguration().set(BrokenStoreFileCleaner.BROKEN_STOREFILE_CLEANER_TTL, "0");
+    testUtil.getConfiguration().set(BrokenStoreFileCleaner.BROKEN_STOREFILE_CLEANER_PERIOD, "15000000");
+    testUtil.getConfiguration().set(BrokenStoreFileCleaner.BROKEN_STOREFILE_CLEANER_DELAY, "0");
+    testUtil.startMiniCluster(1);
+  }
+
+  @After
+  public void tearDown() throws Exception {
+    testUtil.deleteTable(tableName);
+    testUtil.shutdownMiniCluster();
+  }
+
+  @Test
+  public void testDeletingJunkFile() throws Exception {
+    tableName = TableName.valueOf(getClass().getSimpleName() + "testDeletingJunkFile");
+    createTableWithData(tableName);
+
+    HRegion region = testUtil.getMiniHBaseCluster().getRegions(tableName).get(0);
+    ServerName sn = testUtil.getMiniHBaseCluster().getServerHoldingRegion(tableName, region.getRegionInfo().getRegionName());
+    HRegionServer rs = testUtil.getMiniHBaseCluster().getRegionServer(sn);
+    BrokenStoreFileCleaner cleaner = rs.getBrokenStoreFileCleaner();
+
+    //create junk file
+    HStore store = region.getStore(fam);
+    Path cfPath = store.getRegionFileSystem().getStoreDir(store.getColumnFamilyName());
+    Path junkFilePath = new Path(cfPath, junkFileName);
+
+    FSDataOutputStream junkFileOS = store.getFileSystem().create(junkFilePath);
+    junkFileOS.writeUTF("hello");
+    junkFileOS.close();
+
+    int storeFiles =  store.getStorefilesCount();
+    assertTrue(storeFiles > 0);
+
+    //verify the file exist before the chore and missing afterwards
+    assertTrue(store.getFileSystem().exists(junkFilePath));
+    cleaner.chore();
+    assertFalse(store.getFileSystem().exists(junkFilePath));
+
+    //verify no storefile got deleted
+    int currentStoreFiles =  store.getStorefilesCount();
+    assertEquals(currentStoreFiles, storeFiles);
+
+  }
+
+  @Test
+  public void testSkippningCompactedFiles() throws Exception {
+    tableName = TableName.valueOf(getClass().getSimpleName() + "testSkippningCompactedFiles");
+    createTableWithData(tableName);
+
+    HRegion region = testUtil.getMiniHBaseCluster().getRegions(tableName).get(0);
+
+    ServerName sn = testUtil.getMiniHBaseCluster().getServerHoldingRegion(tableName, region.getRegionInfo().getRegionName());
+    HRegionServer rs = testUtil.getMiniHBaseCluster().getRegionServer(sn);
+    BrokenStoreFileCleaner cleaner = rs.getBrokenStoreFileCleaner();
+
+    //run major compaction to generate compaced files
+    region.compact(true);
+
+    //make sure there are compacted files
+    HStore store = region.getStore(fam);
+    int compactedFiles =  store.getCompactedFilesCount();
+    assertTrue(compactedFiles > 0);
+
+    cleaner.chore();
+
+    //verify none of the compacted files wee deleted

Review comment:
       ```suggestion
       //verify none of the compacted files were deleted
   ```

##########
File path: hbase-server/src/test/java/org/apache/hadoop/hbase/regionserver/TestBrokenStoreFileCleaner.java
##########
@@ -0,0 +1,180 @@
+/**
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ *
+ *     http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+package org.apache.hadoop.hbase.regionserver;
+
+import org.apache.hadoop.fs.FSDataOutputStream;
+import org.apache.hadoop.fs.Path;
+import org.apache.hadoop.hbase.HBaseClassTestRule;
+import org.apache.hadoop.hbase.HBaseTestingUtil;
+import org.apache.hadoop.hbase.ServerName;
+import org.apache.hadoop.hbase.TableName;
+import org.apache.hadoop.hbase.client.CompactType;
+import org.apache.hadoop.hbase.client.Put;
+import org.apache.hadoop.hbase.client.Table;
+import org.apache.hadoop.hbase.regionserver.storefiletracker.StoreFileTrackerFactory;
+import org.apache.hadoop.hbase.testclassification.MediumTests;
+import org.apache.hadoop.hbase.testclassification.RegionServerTests;
+import org.apache.hadoop.hbase.util.Bytes;
+import org.junit.After;
+import org.junit.Before;
+import org.junit.ClassRule;
+import org.junit.Test;
+import org.junit.experimental.categories.Category;
+import java.io.IOException;
+import static org.junit.Assert.assertEquals;
+import static org.junit.Assert.assertFalse;
+import static org.junit.Assert.assertTrue;
+
+@Category({ MediumTests.class, RegionServerTests.class })
+public class TestBrokenStoreFileCleaner {
+
+  @ClassRule
+  public static final HBaseClassTestRule CLASS_RULE =
+      HBaseClassTestRule.forClass(TestBrokenStoreFileCleaner.class);
+
+  private final HBaseTestingUtil testUtil = new HBaseTestingUtil();
+  private final static byte[] fam = Bytes.toBytes("cf_1");
+  private final static byte[] qual1 = Bytes.toBytes("qf_1");
+  private final static byte[] val = Bytes.toBytes("val");
+  private final static  String junkFileName = "409fad9a751c4e8c86d7f32581bdc156";
+  TableName tableName;
+
+
+  @Before
+  public void setUp() throws Exception {
+    testUtil.getConfiguration().set(StoreFileTrackerFactory.TRACKER_IMPL, "org.apache.hadoop.hbase.regionserver.storefiletracker.FileBasedStoreFileTracker");
+    testUtil.getConfiguration().set(BrokenStoreFileCleaner.BROKEN_STOREFILE_CLEANER_ENABLED, "true");
+    testUtil.getConfiguration().set(BrokenStoreFileCleaner.BROKEN_STOREFILE_CLEANER_TTL, "0");
+    testUtil.getConfiguration().set(BrokenStoreFileCleaner.BROKEN_STOREFILE_CLEANER_PERIOD, "15000000");
+    testUtil.getConfiguration().set(BrokenStoreFileCleaner.BROKEN_STOREFILE_CLEANER_DELAY, "0");
+    testUtil.startMiniCluster(1);
+  }
+
+  @After
+  public void tearDown() throws Exception {
+    testUtil.deleteTable(tableName);
+    testUtil.shutdownMiniCluster();
+  }
+
+  @Test
+  public void testDeletingJunkFile() throws Exception {
+    tableName = TableName.valueOf(getClass().getSimpleName() + "testDeletingJunkFile");
+    createTableWithData(tableName);
+
+    HRegion region = testUtil.getMiniHBaseCluster().getRegions(tableName).get(0);
+    ServerName sn = testUtil.getMiniHBaseCluster().getServerHoldingRegion(tableName, region.getRegionInfo().getRegionName());
+    HRegionServer rs = testUtil.getMiniHBaseCluster().getRegionServer(sn);
+    BrokenStoreFileCleaner cleaner = rs.getBrokenStoreFileCleaner();
+
+    //create junk file
+    HStore store = region.getStore(fam);
+    Path cfPath = store.getRegionFileSystem().getStoreDir(store.getColumnFamilyName());
+    Path junkFilePath = new Path(cfPath, junkFileName);
+
+    FSDataOutputStream junkFileOS = store.getFileSystem().create(junkFilePath);
+    junkFileOS.writeUTF("hello");
+    junkFileOS.close();
+
+    int storeFiles =  store.getStorefilesCount();
+    assertTrue(storeFiles > 0);
+
+    //verify the file exist before the chore and missing afterwards
+    assertTrue(store.getFileSystem().exists(junkFilePath));
+    cleaner.chore();
+    assertFalse(store.getFileSystem().exists(junkFilePath));
+
+    //verify no storefile got deleted
+    int currentStoreFiles =  store.getStorefilesCount();
+    assertEquals(currentStoreFiles, storeFiles);
+
+  }
+
+  @Test
+  public void testSkippningCompactedFiles() throws Exception {

Review comment:
       ```suggestion
     public void testSkippingCompactedFiles() throws Exception {
   ```




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