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Posted to issues@arrow.apache.org by "Neal Richardson (Jira)" <ji...@apache.org> on 2020/05/30 14:58:00 UTC

[jira] [Assigned] (ARROW-8878) [R] try_download is confused when download.file.method isn't default

     [ https://issues.apache.org/jira/browse/ARROW-8878?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]

Neal Richardson reassigned ARROW-8878:
--------------------------------------

    Assignee: Neal Richardson

> [R] try_download is confused when download.file.method isn't default
> --------------------------------------------------------------------
>
>                 Key: ARROW-8878
>                 URL: https://issues.apache.org/jira/browse/ARROW-8878
>             Project: Apache Arrow
>          Issue Type: Bug
>          Components: R
>         Environment: r
>            Reporter: Olaf
>            Assignee: Neal Richardson
>            Priority: Major
>              Labels: pull-request-available
>          Time Spent: 20m
>  Remaining Estimate: 0h
>
> Hello there and thanks again for this beautiful package!
> I am trying to install {{arrow}} on linux and I got a few problematic warnings during the install. My computer is behind a firewall so not all the connections coming from rstudio are allowed.
>  
> {code:java}
> > sessionInfo()
> R version 3.6.1 (2019-07-05)
> Platform: x86_64-ubuntu18-linux-gnu (64-bit)
> Running under: Ubuntu 18.04.4 LTS
> Matrix products: default
> BLAS/LAPACK: /apps/intel/2019.1/compilers_and_libraries_2019.1.144/linux/mkl/lib/intel64_lin/libmkl_gf_lp64.so
> locale:
>  [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=en_US.UTF-8 
>  [4] LC_COLLATE=en_US.UTF-8 LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 
>  [7] LC_PAPER=en_US.UTF-8 LC_NAME=C LC_ADDRESS=C 
> [10] LC_TELEPHONE=C LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
> attached base packages:
> [1] stats graphics grDevices utils datasets methods base
> other attached packages:
> [1] MKLthreads_0.1
> loaded via a namespace (and not attached):
> [1] compiler_3.6.1 tools_3.6.1
> {code}
>  
> after running {{install.packages("arrow")}} I get
>  
> {code:java}
>  
> installing *source* package ?arrow? ...
> ** package ?arrow? successfully unpacked and MD5 sums checked
> ** using staged installation
> *** Successfully retrieved C++ source
> *** Proceeding without C++ dependencies
> Warning message:
> In unzip(tf1, exdir = src_dir) : error 1 in extracting from zip file
> ./configure: line 132: cd: libarrow/arrow-0.17.1/lib: No such file or directory
> ------------------------- NOTE ---------------------------
> After installation, please run arrow::install_arrow()
> for help installing required runtime libraries
> ---------------------------------------------------------
> {code}
>  
>  
> However, the installation ends normally.
>  
> {code:java}
>  ** R
> ** inst
> ** byte-compile and prepare package for lazy loading
> ** help
> *** installing help indices
> ** building package indices
> ** installing vignettes
> ** testing if installed package can be loaded from temporary location
> ** checking absolute paths in shared objects and dynamic libraries
> ** testing if installed package can be loaded from final location
> ** testing if installed package keeps a record of temporary installation path
> * DONE (arrow)
> {code}
>  
> So I go ahead and try to run arrow::install_arrow() and get a similar warning.
>  
> {code:java}
> installing *source* package ?arrow? ...
> ** package ?arrow? successfully unpacked and MD5 sums checked
> ** using staged installation
> *** Successfully retrieved C++ binaries for ubuntu-18.04
> Warning messages:
> 1: In file(file, "rt") :
>  URL 'https://raw.githubusercontent.com/ursa-labs/arrow-r-nightly/master/linux/distro-map.csv': status was 'Couldn't connect to server'
> 2: In unzip(bin_file, exdir = dst_dir) :
>  error 1 in extracting from zip file
> ./configure: line 132: cd: libarrow/arrow-0.17.1/lib: No such file or directory
> ------------------------- NOTE ---------------------------
> After installation, please run arrow::install_arrow()
> for help installing required runtime libraries
> {code}
> And unfortunately I cannot read any parquet file.
> {noformat}
> Error in fetch(key) : lazy-load database '/mydata/R/x86_64-ubuntu18-linux-gnu-library/3.6/arrow/help/arrow.rdb' is corrupt{noformat}
>  
> Could you please tell me how to fix this? Can I just copy the zip from github and do a manual install in Rstudio?
>  
> Thanks!
>  
>  



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