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Posted to issues@spark.apache.org by "Guoqiang Li (JIRA)" <ji...@apache.org> on 2014/05/26 17:32:02 UTC

[jira] [Updated] (SPARK-1930) Container memory beyond limit, were killed

     [ https://issues.apache.org/jira/browse/SPARK-1930?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]

Guoqiang Li updated SPARK-1930:
-------------------------------

    Summary: Container memory beyond limit, were killed  (was: When the yarn containers occupies 8G memory ,the containers were killed)

> Container memory beyond limit, were killed
> ------------------------------------------
>
>                 Key: SPARK-1930
>                 URL: https://issues.apache.org/jira/browse/SPARK-1930
>             Project: Spark
>          Issue Type: Bug
>          Components: YARN
>            Reporter: Guoqiang Li
>
> When the containers occupies 8G memory ,the containers were killed
> yarn node manager log:
> {code}
> 2014-05-23 13:35:30,776 WARN org.apache.hadoop.yarn.server.nodemanager.containermanager.monitor.ContainersMonitorImpl: Container [pid=4947,containerID=container_1400809535638_0015_01_000005] is running beyond physical memory limits. Current usage: 8.6 GB of 8.5 GB physical memory used; 10.0 GB of 17.8 GB virtual memory used. Killing container.
> Dump of the process-tree for container_1400809535638_0015_01_000005 :
>         |- PID PPID PGRPID SESSID CMD_NAME USER_MODE_TIME(MILLIS) SYSTEM_TIME(MILLIS) VMEM_USAGE(BYTES) RSSMEM_USAGE(PAGES) FULL_CMD_LINE
>         |- 4947 25417 4947 4947 (bash) 0 0 110804992 335 /bin/bash -c /usr/java/jdk1.7.0_45-cloudera/bin/java -server -XX:OnOutOfMemoryError='kill %p' -Xms8192m -Xmx8192m  -Xss2m -Djava.io.tmpdir=/yarn/nm/usercache/spark/appcache/application_1400809535638_0015/container_1400809535638_0015_01_000005/tmp  -Dlog4j.configuration=log4j-spark-container.properties -Dspark.akka.askTimeout="120" -Dspark.akka.timeout="120" -Dspark.akka.frameSize="20" org.apache.spark.executor.CoarseGrainedExecutorBackend akka.tcp://spark@10dian71.domain.test:45477/user/CoarseGrainedScheduler 3 10dian72.domain.test 4 1> /var/log/hadoop-yarn/container/application_1400809535638_0015/container_1400809535638_0015_01_000005/stdout 2> /var/log/hadoop-yarn/container/application_1400809535638_0015/container_1400809535638_0015_01_000005/stderr 
>         |- 4957 4947 4947 4947 (java) 157809 12620 10667016192 2245522 /usr/java/jdk1.7.0_45-cloudera/bin/java -server -XX:OnOutOfMemoryError=kill %p -Xms8192m -Xmx8192m -Xss2m -Djava.io.tmpdir=/yarn/nm/usercache/spark/appcache/application_1400809535638_0015/container_1400809535638_0015_01_000005/tmp -Dlog4j.configuration=log4j-spark-container.properties -Dspark.akka.askTimeout=120 -Dspark.akka.timeout=120 -Dspark.akka.frameSize=20 org.apache.spark.executor.CoarseGrainedExecutorBackend akka.tcp://spark@10dian71.domain.test:45477/user/CoarseGrainedScheduler 3 10dian72.domain.test 4 
> 2014-05-23 13:35:30,776 INFO org.apache.hadoop.yarn.server.nodemanager.containermanager.monitor.ContainersMonitorImpl: Removed ProcessTree with root 4947
> 2014-05-23 13:35:30,776 INFO org.apache.hadoop.yarn.server.nodemanager.containermanager.container.Container: Container container_1400809535638_0015_01_000005 transitioned from RUNNING to KILLING
> 2014-05-23 13:35:30,777 INFO org.apache.hadoop.yarn.server.nodemanager.containermanager.launcher.ContainerLaunch: Cleaning up container container_1400809535638_0015_01_000005
> 2014-05-23 13:35:30,788 WARN org.apache.hadoop.yarn.server.nodemanager.DefaultContainerExecutor: Exit code from container container_1400809535638_0015_01_000005 is : 143
> 2014-05-23 13:35:30,829 INFO org.apache.hadoop.yarn.server.nodemanager.containermanager.container.Container: Container container_1400809535638_0015_01_000005 transitioned from KILLING to CONTAINER_CLEANEDUP_AFTER_KILL
> 2014-05-23 13:35:30,830 INFO org.apache.hadoop.yarn.server.nodemanager.DefaultContainerExecutor: Deleting absolute path : /yarn/nm/usercache/spark/appcache/application_1400809535638_0015/container_1400809535638_0015_01_000005
> 2014-05-23 13:35:30,830 INFO org.apache.hadoop.yarn.server.nodemanager.NMAuditLogger: USER=spark        OPERATION=Container Finished - Killed   TARGET=ContainerImpl    RESULT=SUCCESS  APPID=application_1400809535638_0015    CONTAINERID=container_1400809535638_0015_01_000005
> 2014-05-23 13:35:30,830 INFO org.apache.hadoop.yarn.server.nodemanager.containermanager.container.Container: Container container_1400809535638_0015_01_000005 transitioned from CONTAINER_CLEANEDUP_AFTER_KILL to DONE
> 2014-05-23 13:35:30,830 INFO org.apache.hadoop.yarn.server.nodemanager.containermanager.application.Application: Removing container_1400809535638_0015_01_000005 from application application_1400809535638_0015
> {code}
> I think it should be related with {{YarnAllocationHandler.MEMORY_OVERHEA}}  
> https://github.com/apache/spark/blob/master/yarn/stable/src/main/scala/org/apache/spark/deploy/yarn/YarnAllocationHandler.scala#L562
> Relative to 8G, 384 MB is too small



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