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Posted to dev@uima.apache.org by "Eddie Epstein (JIRA)" <ui...@incubator.apache.org> on 2007/04/10 15:15:32 UTC
[jira] Created: (UIMA-371) XMI serialization to UIMA C++
XMI serialization to UIMA C++
-----------------------------
Key: UIMA-371
URL: https://issues.apache.org/jira/browse/UIMA-371
Project: UIMA
Issue Type: New Feature
Components: C++ Framework
Reporter: Eddie Epstein
Assigned To: Eddie Epstein
Fix For: 2.2
In order to comply to the UIMA standard for CAS data, Bhavani Iyer has been working on XMI serialization support for UIMA C++.
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[jira] Updated: (UIMA-371) XMI serialization to UIMA C++
Posted by "Bhavani Iyer (JIRA)" <ui...@incubator.apache.org>.
[ https://issues.apache.org/jira/browse/UIMA-371?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]
Bhavani Iyer updated UIMA-371:
------------------------------
Attachment: uimacpp_xmi.patch
Fix default behavior for unknown xml elements and attributes to be compatible with Java implementation. Unknown elements and attributes are handled as out of typesystem data only if
a handle to the XmiSerializationSharedData is passed in to the call to deserialize.
> XMI serialization to UIMA C++
> -----------------------------
>
> Key: UIMA-371
> URL: https://issues.apache.org/jira/browse/UIMA-371
> Project: UIMA
> Issue Type: New Feature
> Components: C++ Framework
> Reporter: Eddie Epstein
> Assigned To: Eddie Epstein
> Fix For: 2.2
>
> Attachments: uimacpp_xmi.patch, uimacpp_xmi.patch, uimacpp_xmi.zip
>
>
> In order to comply to the UIMA standard for CAS data, Bhavani Iyer has been working on XMI serialization support for UIMA C++.
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[jira] Commented: (UIMA-371) XMI serialization to UIMA C++
Posted by "Adam Lally (JIRA)" <ui...@incubator.apache.org>.
[ https://issues.apache.org/jira/browse/UIMA-371?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel#action_12493733 ]
Adam Lally commented on UIMA-371:
---------------------------------
>Further testing by Bhavani has found an incompatibilty with Java: byte arrays should be base64 encoded.
Make that hex string encoded. Sorry about introducing that confusion.
> XMI serialization to UIMA C++
> -----------------------------
>
> Key: UIMA-371
> URL: https://issues.apache.org/jira/browse/UIMA-371
> Project: UIMA
> Issue Type: New Feature
> Components: C++ Framework
> Reporter: Eddie Epstein
> Assigned To: Eddie Epstein
> Fix For: 2.2
>
> Attachments: uimacpp-xmi.patch, uimacpp_xmi.patch, uimacpp_xmi.patch, uimacpp_xmi.zip, xmi_bytearray.patch
>
>
> In order to comply to the UIMA standard for CAS data, Bhavani Iyer has been working on XMI serialization support for UIMA C++.
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[jira] Closed: (UIMA-371) XMI serialization to UIMA C++
Posted by "Eddie Epstein (JIRA)" <ui...@incubator.apache.org>.
[ https://issues.apache.org/jira/browse/UIMA-371?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]
Eddie Epstein closed UIMA-371.
------------------------------
> XMI serialization to UIMA C++
> -----------------------------
>
> Key: UIMA-371
> URL: https://issues.apache.org/jira/browse/UIMA-371
> Project: UIMA
> Issue Type: New Feature
> Components: C++ Framework
> Reporter: Eddie Epstein
> Assignee: Eddie Epstein
> Fix For: 2.2C
>
> Attachments: UIMA-371-1.patch, UIMA-371.patch, uimacpp-xmi.patch, uimacpp_xmi.patch, uimacpp_xmi.zip, xmi_bytearray.patch
>
>
> In order to comply to the UIMA standard for CAS data, Bhavani Iyer has been working on XMI serialization support for UIMA C++.
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[jira] Updated: (UIMA-371) XMI serialization to UIMA C++
Posted by "Bhavani Iyer (JIRA)" <ui...@incubator.apache.org>.
[ https://issues.apache.org/jira/browse/UIMA-371?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]
Bhavani Iyer updated UIMA-371:
------------------------------
Attachment: uimacpp_xmi.zip
uimacpp_xmi.patch
The attached contains the implementation of C++ support for XMI serialization. the XMI code is a port of the XMI serialization code from the Apache Java distribution, combined with techniques used in XCAS serialization code from Apache C++ distribution. The patch contains fixes to the bugs listed below found while implementing the XMI serialization:
a) removed assert statements which were preventing proper reporting of exceptions when loading an annotator dll which is not found in the path and on call to getIndex with an invalid index name.
b) fixes to XMLParser methods to synch up with the schema. This is required for XMI test cases.
c) Type name of ANNOTATION_BASE missing the namespace prefix. Fix required for XMI serialization to work properly.
> XMI serialization to UIMA C++
> -----------------------------
>
> Key: UIMA-371
> URL: https://issues.apache.org/jira/browse/UIMA-371
> Project: UIMA
> Issue Type: New Feature
> Components: C++ Framework
> Reporter: Eddie Epstein
> Assigned To: Eddie Epstein
> Fix For: 2.2
>
> Attachments: uimacpp_xmi.patch, uimacpp_xmi.zip
>
>
> In order to comply to the UIMA standard for CAS data, Bhavani Iyer has been working on XMI serialization support for UIMA C++.
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[jira] Reopened: (UIMA-371) XMI serialization to UIMA C++
Posted by "Eddie Epstein (JIRA)" <ui...@incubator.apache.org>.
[ https://issues.apache.org/jira/browse/UIMA-371?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]
Eddie Epstein reopened UIMA-371:
--------------------------------
Format differences between C++ and Java need to be eliminated.
> XMI serialization to UIMA C++
> -----------------------------
>
> Key: UIMA-371
> URL: https://issues.apache.org/jira/browse/UIMA-371
> Project: UIMA
> Issue Type: New Feature
> Components: C++ Framework
> Reporter: Eddie Epstein
> Assignee: Eddie Epstein
> Fix For: 2.2C
>
> Attachments: uimacpp-xmi.patch, uimacpp_xmi.patch, uimacpp_xmi.zip, xmi_bytearray.patch
>
>
> In order to comply to the UIMA standard for CAS data, Bhavani Iyer has been working on XMI serialization support for UIMA C++.
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[jira] Updated: (UIMA-371) XMI serialization to UIMA C++
Posted by "Bhavani Iyer (JIRA)" <ui...@incubator.apache.org>.
[ https://issues.apache.org/jira/browse/UIMA-371?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]
Bhavani Iyer updated UIMA-371:
------------------------------
Attachment: xmi_bytearray.patch
Had not checked the Grant license to ASF for inclusion in ASF works flag
> XMI serialization to UIMA C++
> -----------------------------
>
> Key: UIMA-371
> URL: https://issues.apache.org/jira/browse/UIMA-371
> Project: UIMA
> Issue Type: New Feature
> Components: C++ Framework
> Reporter: Eddie Epstein
> Assigned To: Eddie Epstein
> Fix For: 2.2
>
> Attachments: uimacpp-xmi.patch, uimacpp_xmi.patch, uimacpp_xmi.patch, uimacpp_xmi.zip, xmi_bytearray.patch, xmi_bytearray.patch
>
>
> In order to comply to the UIMA standard for CAS data, Bhavani Iyer has been working on XMI serialization support for UIMA C++.
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[jira] Updated: (UIMA-371) XMI serialization to UIMA C++
Posted by "Bhavani Iyer (JIRA)" <ui...@incubator.apache.org>.
[ https://issues.apache.org/jira/browse/UIMA-371?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]
Bhavani Iyer updated UIMA-371:
------------------------------
Attachment: UIMA-371-1.patch
Fix for memory leak in XmiSerializationSharedData. The destructor was not deleting vector of OOTS array elements.
> XMI serialization to UIMA C++
> -----------------------------
>
> Key: UIMA-371
> URL: https://issues.apache.org/jira/browse/UIMA-371
> Project: UIMA
> Issue Type: New Feature
> Components: C++ Framework
> Reporter: Eddie Epstein
> Assignee: Eddie Epstein
> Fix For: 2.2C
>
> Attachments: UIMA-371-1.patch, UIMA-371.patch, uimacpp-xmi.patch, uimacpp_xmi.patch, uimacpp_xmi.zip, xmi_bytearray.patch
>
>
> In order to comply to the UIMA standard for CAS data, Bhavani Iyer has been working on XMI serialization support for UIMA C++.
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[jira] Updated: (UIMA-371) XMI serialization to UIMA C++
Posted by "Bhavani Iyer (JIRA)" <ui...@incubator.apache.org>.
[ https://issues.apache.org/jira/browse/UIMA-371?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]
Bhavani Iyer updated UIMA-371:
------------------------------
Attachment: UIMA-371.patch
The patch fixes the handling of FSList type features to be compatible with the Java XMI output and to support multiple references allowed attribute.
> XMI serialization to UIMA C++
> -----------------------------
>
> Key: UIMA-371
> URL: https://issues.apache.org/jira/browse/UIMA-371
> Project: UIMA
> Issue Type: New Feature
> Components: C++ Framework
> Reporter: Eddie Epstein
> Assignee: Eddie Epstein
> Fix For: 2.2C
>
> Attachments: UIMA-371.patch, uimacpp-xmi.patch, uimacpp_xmi.patch, uimacpp_xmi.zip, xmi_bytearray.patch
>
>
> In order to comply to the UIMA standard for CAS data, Bhavani Iyer has been working on XMI serialization support for UIMA C++.
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[jira] Updated: (UIMA-371) XMI serialization to UIMA C++
Posted by "Marshall Schor (JIRA)" <ui...@incubator.apache.org>.
[ https://issues.apache.org/jira/browse/UIMA-371?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]
Marshall Schor updated UIMA-371:
--------------------------------
Fix Version/s: (was: 2.2)
2.2C
> XMI serialization to UIMA C++
> -----------------------------
>
> Key: UIMA-371
> URL: https://issues.apache.org/jira/browse/UIMA-371
> Project: UIMA
> Issue Type: New Feature
> Components: C++ Framework
> Reporter: Eddie Epstein
> Assignee: Eddie Epstein
> Fix For: 2.2C
>
> Attachments: uimacpp-xmi.patch, uimacpp_xmi.patch, uimacpp_xmi.zip, xmi_bytearray.patch
>
>
> In order to comply to the UIMA standard for CAS data, Bhavani Iyer has been working on XMI serialization support for UIMA C++.
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[jira] Resolved: (UIMA-371) XMI serialization to UIMA C++
Posted by "Eddie Epstein (JIRA)" <ui...@incubator.apache.org>.
[ https://issues.apache.org/jira/browse/UIMA-371?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]
Eddie Epstein resolved UIMA-371.
--------------------------------
Resolution: Fixed
> XMI serialization to UIMA C++
> -----------------------------
>
> Key: UIMA-371
> URL: https://issues.apache.org/jira/browse/UIMA-371
> Project: UIMA
> Issue Type: New Feature
> Components: C++ Framework
> Reporter: Eddie Epstein
> Assigned To: Eddie Epstein
> Fix For: 2.2
>
> Attachments: uimacpp-xmi.patch, uimacpp_xmi.patch, uimacpp_xmi.patch, uimacpp_xmi.zip
>
>
> In order to comply to the UIMA standard for CAS data, Bhavani Iyer has been working on XMI serialization support for UIMA C++.
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[jira] Updated: (UIMA-371) XMI serialization to UIMA C++
Posted by "Eddie Epstein (JIRA)" <ui...@incubator.apache.org>.
[ https://issues.apache.org/jira/browse/UIMA-371?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]
Eddie Epstein updated UIMA-371:
-------------------------------
Attachment: (was: uimacpp_xmi.patch)
> XMI serialization to UIMA C++
> -----------------------------
>
> Key: UIMA-371
> URL: https://issues.apache.org/jira/browse/UIMA-371
> Project: UIMA
> Issue Type: New Feature
> Components: C++ Framework
> Reporter: Eddie Epstein
> Assigned To: Eddie Epstein
> Fix For: 2.2
>
> Attachments: uimacpp-xmi.patch, uimacpp_xmi.patch, uimacpp_xmi.zip, xmi_bytearray.patch
>
>
> In order to comply to the UIMA standard for CAS data, Bhavani Iyer has been working on XMI serialization support for UIMA C++.
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Re: [jira] Updated: (UIMA-371) XMI serialization to UIMA C++
Posted by Eddie Epstein <ea...@gmail.com>.
On 5/4/07, Thilo Goetz <tw...@gmx.de> wrote:
> Two of the five patches attached to this issue do not have the "ASF
> Granted License" flag set. Could you please change that before we apply
> the patch? I'm not sure this can be done after the fact, maybe you'll
> need to re-attach the patch (delete and create again).
Thilo,
Thanks for pointing this out. Of the two, the first one was already
ignored. The second patch has been resubmitted with the license
granted.
Eddie
Re: [jira] Updated: (UIMA-371) XMI serialization to UIMA C++
Posted by Thilo Goetz <tw...@gmx.de>.
Two of the five patches attached to this issue do not have the "ASF
Granted License" flag set. Could you please change that before we apply
the patch? I'm not sure this can be done after the fact, maybe you'll
need to re-attach the patch (delete and create again).
--Thilo
Bhavani Iyer (JIRA) wrote:
> [ https://issues.apache.org/jira/browse/UIMA-371?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]
>
> Bhavani Iyer updated UIMA-371:
> ------------------------------
>
> Attachment: xmi_bytearray.patch
>
> Fixed xmi serialization of byte array to handle signed values. Added some checks to test for valid FeatureSructure object.
>
>> XMI serialization to UIMA C++
>> -----------------------------
>>
>> Key: UIMA-371
>> URL: https://issues.apache.org/jira/browse/UIMA-371
>> Project: UIMA
>> Issue Type: New Feature
>> Components: C++ Framework
>> Reporter: Eddie Epstein
>> Assigned To: Eddie Epstein
>> Fix For: 2.2
>>
>> Attachments: uimacpp-xmi.patch, uimacpp_xmi.patch, uimacpp_xmi.patch, uimacpp_xmi.zip, xmi_bytearray.patch
>>
>>
>> In order to comply to the UIMA standard for CAS data, Bhavani Iyer has been working on XMI serialization support for UIMA C++.
>
[jira] Updated: (UIMA-371) XMI serialization to UIMA C++
Posted by "Bhavani Iyer (JIRA)" <ui...@incubator.apache.org>.
[ https://issues.apache.org/jira/browse/UIMA-371?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]
Bhavani Iyer updated UIMA-371:
------------------------------
Attachment: xmi_bytearray.patch
Fixed xmi serialization of byte array to handle signed values. Added some checks to test for valid FeatureSructure object.
> XMI serialization to UIMA C++
> -----------------------------
>
> Key: UIMA-371
> URL: https://issues.apache.org/jira/browse/UIMA-371
> Project: UIMA
> Issue Type: New Feature
> Components: C++ Framework
> Reporter: Eddie Epstein
> Assigned To: Eddie Epstein
> Fix For: 2.2
>
> Attachments: uimacpp-xmi.patch, uimacpp_xmi.patch, uimacpp_xmi.patch, uimacpp_xmi.zip, xmi_bytearray.patch
>
>
> In order to comply to the UIMA standard for CAS data, Bhavani Iyer has been working on XMI serialization support for UIMA C++.
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[jira] Updated: (UIMA-371) XMI serialization to UIMA C++
Posted by "Eddie Epstein (JIRA)" <ui...@incubator.apache.org>.
[ https://issues.apache.org/jira/browse/UIMA-371?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]
Eddie Epstein updated UIMA-371:
-------------------------------
Attachment: (was: xmi_bytearray.patch)
> XMI serialization to UIMA C++
> -----------------------------
>
> Key: UIMA-371
> URL: https://issues.apache.org/jira/browse/UIMA-371
> Project: UIMA
> Issue Type: New Feature
> Components: C++ Framework
> Reporter: Eddie Epstein
> Assigned To: Eddie Epstein
> Fix For: 2.2
>
> Attachments: uimacpp-xmi.patch, uimacpp_xmi.patch, uimacpp_xmi.zip, xmi_bytearray.patch
>
>
> In order to comply to the UIMA standard for CAS data, Bhavani Iyer has been working on XMI serialization support for UIMA C++.
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[jira] Resolved: (UIMA-371) XMI serialization to UIMA C++
Posted by "Eddie Epstein (JIRA)" <ui...@incubator.apache.org>.
[ https://issues.apache.org/jira/browse/UIMA-371?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]
Eddie Epstein resolved UIMA-371.
--------------------------------
Resolution: Fixed
Looks good. Thanks Bhavani.
> XMI serialization to UIMA C++
> -----------------------------
>
> Key: UIMA-371
> URL: https://issues.apache.org/jira/browse/UIMA-371
> Project: UIMA
> Issue Type: New Feature
> Components: C++ Framework
> Reporter: Eddie Epstein
> Assignee: Eddie Epstein
> Fix For: 2.2C
>
> Attachments: UIMA-371-1.patch, UIMA-371.patch, uimacpp-xmi.patch, uimacpp_xmi.patch, uimacpp_xmi.zip, xmi_bytearray.patch
>
>
> In order to comply to the UIMA standard for CAS data, Bhavani Iyer has been working on XMI serialization support for UIMA C++.
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[jira] Updated: (UIMA-371) XMI serialization to UIMA C++
Posted by "Bhavani Iyer (JIRA)" <ui...@incubator.apache.org>.
[ https://issues.apache.org/jira/browse/UIMA-371?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]
Bhavani Iyer updated UIMA-371:
------------------------------
Attachment: uimacpp-xmi.patch
Previous patch was not ignoring line ends
> XMI serialization to UIMA C++
> -----------------------------
>
> Key: UIMA-371
> URL: https://issues.apache.org/jira/browse/UIMA-371
> Project: UIMA
> Issue Type: New Feature
> Components: C++ Framework
> Reporter: Eddie Epstein
> Assigned To: Eddie Epstein
> Fix For: 2.2
>
> Attachments: uimacpp-xmi.patch, uimacpp_xmi.patch, uimacpp_xmi.patch, uimacpp_xmi.zip
>
>
> In order to comply to the UIMA standard for CAS data, Bhavani Iyer has been working on XMI serialization support for UIMA C++.
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[jira] Work started: (UIMA-371) XMI serialization to UIMA C++
Posted by "Eddie Epstein (JIRA)" <ui...@incubator.apache.org>.
[ https://issues.apache.org/jira/browse/UIMA-371?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]
Work on UIMA-371 started by Eddie Epstein.
> XMI serialization to UIMA C++
> -----------------------------
>
> Key: UIMA-371
> URL: https://issues.apache.org/jira/browse/UIMA-371
> Project: UIMA
> Issue Type: New Feature
> Components: C++ Framework
> Reporter: Eddie Epstein
> Assigned To: Eddie Epstein
> Fix For: 2.2
>
>
> In order to comply to the UIMA standard for CAS data, Bhavani Iyer has been working on XMI serialization support for UIMA C++.
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[jira] Reopened: (UIMA-371) XMI serialization to UIMA C++
Posted by "Eddie Epstein (JIRA)" <ui...@incubator.apache.org>.
[ https://issues.apache.org/jira/browse/UIMA-371?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]
Eddie Epstein reopened UIMA-371:
--------------------------------
Further testing by Bhavani has found an incompatibilty with Java: byte arrays should be base64 encoded.
> XMI serialization to UIMA C++
> -----------------------------
>
> Key: UIMA-371
> URL: https://issues.apache.org/jira/browse/UIMA-371
> Project: UIMA
> Issue Type: New Feature
> Components: C++ Framework
> Reporter: Eddie Epstein
> Assigned To: Eddie Epstein
> Fix For: 2.2
>
> Attachments: uimacpp-xmi.patch, uimacpp_xmi.patch, uimacpp_xmi.patch, uimacpp_xmi.zip
>
>
> In order to comply to the UIMA standard for CAS data, Bhavani Iyer has been working on XMI serialization support for UIMA C++.
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[jira] Resolved: (UIMA-371) XMI serialization to UIMA C++
Posted by "Eddie Epstein (JIRA)" <ui...@incubator.apache.org>.
[ https://issues.apache.org/jira/browse/UIMA-371?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]
Eddie Epstein resolved UIMA-371.
--------------------------------
Resolution: Fixed
Applied Bhavani's patch
> XMI serialization to UIMA C++
> -----------------------------
>
> Key: UIMA-371
> URL: https://issues.apache.org/jira/browse/UIMA-371
> Project: UIMA
> Issue Type: New Feature
> Components: C++ Framework
> Reporter: Eddie Epstein
> Assigned To: Eddie Epstein
> Fix For: 2.2
>
> Attachments: uimacpp-xmi.patch, uimacpp_xmi.patch, uimacpp_xmi.zip, xmi_bytearray.patch
>
>
> In order to comply to the UIMA standard for CAS data, Bhavani Iyer has been working on XMI serialization support for UIMA C++.
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