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Posted to commits@ctakes.apache.org by ch...@apache.org on 2014/04/18 21:48:35 UTC
svn commit: r1588552 [27/42] - in /ctakes/sandbox/ctakes-web-client: ./
.settings/ WebContent/ WebContent/META-INF/ WebContent/WEB-INF/
WebContent/WEB-INF/lib/ src/ src/main/ src/main/java/ src/main/java/org/
src/main/java/org/apache/ src/main/java/org...
Added: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/coreference/types/RelationArgument.xml
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/coreference/types/RelationArgument.xml?rev=1588552&view=auto
==============================================================================
--- ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/coreference/types/RelationArgument.xml (added)
+++ ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/coreference/types/RelationArgument.xml Fri Apr 18 19:47:21 2014
@@ -0,0 +1,56 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+ Licensed to the Apache Software Foundation (ASF) under one
+ or more contributor license agreements. See the NOTICE file
+ distributed with this work for additional information
+ regarding copyright ownership. The ASF licenses this file
+ to you under the Apache License, Version 2.0 (the
+ "License"); you may not use this file except in compliance
+ with the License. You may obtain a copy of the License at
+
+ http://www.apache.org/licenses/LICENSE-2.0
+
+ Unless required by applicable law or agreed to in writing,
+ software distributed under the License is distributed on an
+ "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ KIND, either express or implied. See the License for the
+ specific language governing permissions and limitations
+ under the License.
+
+-->
+<typeSystemDescription xmlns="http://uima.apache.org/resourceSpecifier">
+ <name>RelationArgument</name>
+ <description/>
+ <version>1.0</version>
+ <vendor/>
+ <types>
+ <typeDescription>
+ <name>org.apache.ctakes.coreference.type.RelationArgument</name>
+ <description/>
+ <supertypeName>uima.cas.TOP</supertypeName>
+ <features>
+ <featureDescription>
+ <name>id</name>
+ <description/>
+ <rangeTypeName>uima.cas.Integer</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>argument</name>
+ <description/>
+ <rangeTypeName>uima.tcas.Annotation</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>role</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ </features>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.coreference.type.UnrelationArgument</name>
+ <description>A relation argument for a negative example. Used mainly for debugging.</description>
+ <supertypeName>org.apache.ctakes.coreference.type.RelationArgument</supertypeName>
+ </typeDescription>
+ </types>
+</typeSystemDescription>
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Added: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/coreference/types/TypeSystem.xml
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--- ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/coreference/types/TypeSystem.xml (added)
+++ ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/coreference/types/TypeSystem.xml Fri Apr 18 19:47:21 2014
@@ -0,0 +1,110 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+ Licensed to the Apache Software Foundation (ASF) under one
+ or more contributor license agreements. See the NOTICE file
+ distributed with this work for additional information
+ regarding copyright ownership. The ASF licenses this file
+ to you under the Apache License, Version 2.0 (the
+ "License"); you may not use this file except in compliance
+ with the License. You may obtain a copy of the License at
+
+ http://www.apache.org/licenses/LICENSE-2.0
+
+ Unless required by applicable law or agreed to in writing,
+ software distributed under the License is distributed on an
+ "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ KIND, either express or implied. See the License for the
+ specific language governing permissions and limitations
+ under the License.
+
+-->
+<typeSystemDescription xmlns="http://uima.apache.org/resourceSpecifier">
+ <name>org.apache.ctakes.coreference.types.TypeSystem</name>
+ <description/>
+ <version>1.0</version>
+ <vendor/>
+ <imports>
+ <import location="Pair.xml"/>
+ <import location="BooleanLabeledFS.xml"/>
+ </imports>
+ <types>
+ <typeDescription>
+ <name>org.apache.ctakes.coreference.type.Markable</name>
+ <description/>
+ <supertypeName>uima.tcas.Annotation</supertypeName>
+ <features>
+ <featureDescription>
+ <name>content</name>
+ <description>The markable instance, i.e., a Named Entity, pronoun Token, etc.</description>
+ <rangeTypeName>uima.tcas.Annotation</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>id</name>
+ <description/>
+ <rangeTypeName>uima.cas.Integer</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>anaphoric_prob</name>
+ <description/>
+ <rangeTypeName>uima.cas.Double</rangeTypeName>
+ </featureDescription>
+ </features>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.coreference.type.PronounMarkable</name>
+ <description/>
+ <supertypeName>org.apache.ctakes.coreference.type.Markable</supertypeName>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.coreference.type.NEMarkable</name>
+ <description/>
+ <supertypeName>org.apache.ctakes.coreference.type.Markable</supertypeName>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.coreference.type.DemMarkable</name>
+ <description/>
+ <supertypeName>org.apache.ctakes.coreference.type.Markable</supertypeName>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.coreference.type.MarkablePair</name>
+ <description/>
+ <supertypeName>uima.cas.TOP</supertypeName>
+ <features>
+ <featureDescription>
+ <name>antecedent</name>
+ <description>Proposed antecedent</description>
+ <rangeTypeName>org.apache.ctakes.coreference.type.Markable</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>anaphor</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.coreference.type.Markable</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>label</name>
+ <description>Is this pair coreferent?</description>
+ <rangeTypeName>uima.cas.Boolean</rangeTypeName>
+ </featureDescription>
+ </features>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.coreference.type.MarkablePairSet</name>
+ <description/>
+ <supertypeName>uima.tcas.Annotation</supertypeName>
+ <features>
+ <featureDescription>
+ <name>anaphor</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.coreference.type.Markable</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>antecedentList</name>
+ <description/>
+ <rangeTypeName>uima.cas.FSList</rangeTypeName>
+ <elementType>org.chboston.cnlp.ctakes.common.BooleanLabeledFS</elementType>
+ </featureDescription>
+ </features>
+ </typeDescription>
+ </types>
+</typeSystemDescription>
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Added: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/coreference/types/VecInst.xml
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--- ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/coreference/types/VecInst.xml (added)
+++ ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/coreference/types/VecInst.xml Fri Apr 18 19:47:21 2014
@@ -0,0 +1,88 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+ Licensed to the Apache Software Foundation (ASF) under one
+ or more contributor license agreements. See the NOTICE file
+ distributed with this work for additional information
+ regarding copyright ownership. The ASF licenses this file
+ to you under the Apache License, Version 2.0 (the
+ "License"); you may not use this file except in compliance
+ with the License. You may obtain a copy of the License at
+
+ http://www.apache.org/licenses/LICENSE-2.0
+
+ Unless required by applicable law or agreed to in writing,
+ software distributed under the License is distributed on an
+ "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ KIND, either express or implied. See the License for the
+ specific language governing permissions and limitations
+ under the License.
+
+-->
+<typeSystemDescription xmlns="http://uima.apache.org/resourceSpecifier">
+ <name>VecInst</name>
+ <description/>
+ <version>1.0</version>
+ <vendor/>
+ <types>
+ <typeDescription>
+ <name>org.apache.ctakes.coreference.type.VecInstance</name>
+ <description/>
+ <supertypeName>uima.cas.TOP</supertypeName>
+ <features>
+ <featureDescription>
+ <name>vector</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>a1</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>a2</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>offset1</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>offset2</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>classifier</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ </features>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.coreference.type.AnaphoricityVecInstance</name>
+ <description/>
+ <supertypeName>uima.cas.TOP</supertypeName>
+ <features>
+ <featureDescription>
+ <name>vector</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>m</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>offset</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ </features>
+ </typeDescription>
+ </types>
+</typeSystemDescription>
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Added: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dependency/parser/models/clearparser_models.jar
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dependency/parser/models/clearparser_models.jar?rev=1588552&view=auto
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Added: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dependency/parser/models/dependency/README
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dependency/parser/models/dependency/README?rev=1588552&view=auto
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--- ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dependency/parser/models/dependency/README (added)
+++ ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dependency/parser/models/dependency/README Fri Apr 18 19:47:21 2014
@@ -0,0 +1,26 @@
+#################
+additional models
+#################
+
+There is an additional model available from the ClearTK downloads page:
+
+https://code.google.com/p/clearnlp/
+
+and is called mayo-en-dep-1.3.0.jar. This model is built from
+both the training data and development data from the CoNLL 2009 shared task (see
+links above). This model was provided by Jinho Choi.
+
+#####
+Notes
+#####
+
+- Both models were trained using PennTreebank part-of-speech tags. So, your input part-of-speech
+tags should match the tags used for training this model. The part-of-speech tag for punctuation
+symbols such as "." "," ":" ";" "(" ")" etc. are the symbols themselves (i.e. the part-of-speech tag
+for the token ")" should be ")".) This may be inconsistent with other PTB-derived tagging schemes that
+may use tags such as "COLON" or "RRB". Your part-of-speech tags should be modified to be consistent with
+the tagging scheme used here.
+
+- The dependency labeling scheme produced by the models provided here is separate/different from that of
+the Malt parser models used by ClearTK's wrapper of the Malt parser. You should not assume that
+the wrapper for the Clear Parser can be used interchangeably with the wrapper for the Malt Parser.
\ No newline at end of file
Added: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dependency/parser/models/dependency/mayo-en-dep-1.3.0.jar
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dependency/parser/models/dependency/mayo-en-dep-1.3.0.jar?rev=1588552&view=auto
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Added: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dependency/parser/models/lemmatizer/README
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dependency/parser/models/lemmatizer/README?rev=1588552&view=auto
==============================================================================
--- ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dependency/parser/models/lemmatizer/README (added)
+++ ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dependency/parser/models/lemmatizer/README Fri Apr 18 19:47:21 2014
@@ -0,0 +1,2 @@
+The file dictionary-1.3.0.jar was obtained directly from the author of
+clearn NLP, Jinho Choi.
\ No newline at end of file
Added: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dependency/parser/models/lemmatizer/dictionary-1.3.1.jar
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dependency/parser/models/lemmatizer/dictionary-1.3.1.jar?rev=1588552&view=auto
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Added: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dependency/parser/models/pred/mayo-en-pred-1.3.0.jar
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dependency/parser/models/pred/mayo-en-pred-1.3.0.jar?rev=1588552&view=auto
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Added: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dependency/parser/models/role/mayo-en-role-1.3.0.jar
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dependency/parser/models/role/mayo-en-role-1.3.0.jar?rev=1588552&view=auto
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Added: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dependency/parser/models/srl/README
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dependency/parser/models/srl/README?rev=1588552&view=auto
==============================================================================
--- ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dependency/parser/models/srl/README (added)
+++ ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dependency/parser/models/srl/README Fri Apr 18 19:47:21 2014
@@ -0,0 +1,29 @@
+############################
+mayo-en-srl-1.3.0.jar, ../pred/mayo-en,pred-1.3.0.jar, ../role/mayo-en-role-1.3.0.jar
+############################
+The model mayo-en-srl-1.3.0.jar was provided by Jinho Choi and is trained on the
+development set of the OntoNotes corpus version 4.0. More information about this data can
+be found here:
+http://www.ldc.upenn.edu/Catalog/docs/LDC2011T03/OntoNotes-Release-4.0.pdf
+
+This model produces semantic role labels over a dependency tree. So unlike PropBank,
+predicates and arguments only span the head expression. Knowing the full argument span
+will require traversal of the dependency tree.
+
+#####
+Notes
+#####
+
+- Both models were trained using PennTreebank part-of-speech tags. So, your input part-of-speech
+tags should match the tags used for training this model. The part-of-speech tag for punctuation
+symbols such as "." "," ":" ";" "(" ")" etc. are the symbols themselves (i.e. the part-of-speech tag
+for the token ")" should be ")".) This may be inconsistent with other PTB-derived tagging schemes that
+may use tags such as "COLON" or "RRB". Your part-of-speech tags should be modified to be consistent with
+the tagging scheme used here.
+
+- The models also depend on a dependency tree produced by the ClearNLP dependency parser. This should be
+run prior to running ClearNLP semantic role labeler.
+
+- The dependency labeling scheme produced by the models provided here is separate/different from that of
+the Malt parser models used by ClearTK's wrapper of the Malt parser. You should not assume that
+the wrapper for the Clear Parser can be used interchangeably with the wrapper for the Malt Parser.
\ No newline at end of file
Added: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dependency/parser/models/srl/mayo-en-srl-1.3.0.jar
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dependency/parser/models/srl/mayo-en-srl-1.3.0.jar?rev=1588552&view=auto
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Added: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dictionary/lookup/AssertionCuePhraseDictionaryLookupAnnotator.xml
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dictionary/lookup/AssertionCuePhraseDictionaryLookupAnnotator.xml?rev=1588552&view=auto
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--- ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dictionary/lookup/AssertionCuePhraseDictionaryLookupAnnotator.xml (added)
+++ ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dictionary/lookup/AssertionCuePhraseDictionaryLookupAnnotator.xml Fri Apr 18 19:47:21 2014
@@ -0,0 +1,117 @@
+<?xml version="1.0" encoding="UTF-8"?><taeDescription xmlns="http://uima.apache.org/resourceSpecifier">
+ <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
+ <primitive>true</primitive>
+ <annotatorImplementationName>org.apache.ctakes.dictionary.lookup.ae.DictionaryLookupAnnotator</annotatorImplementationName>
+ <analysisEngineMetaData>
+ <name>AssertionCuePhraseDictionaryLookupAnnotator</name>
+ <description/>
+ <version/>
+ <vendor/>
+ <configurationParameters>
+ <configurationParameter>
+ <name>maxListSize</name>
+ <description>Specifies the maximum number of items to be returned from an lucene query.</description>
+ <type>Integer</type>
+ <multiValued>false</multiValued>
+ <mandatory>false</mandatory>
+ </configurationParameter>
+ </configurationParameters>
+ <configurationParameterSettings>
+ <nameValuePair>
+ <name>maxListSize</name>
+ <value>
+ <integer>2147483647</integer>
+ </value>
+ </nameValuePair>
+ </configurationParameterSettings>
+ <typeSystemDescription/>
+ <typePriorities/>
+ <fsIndexCollection/>
+ <capabilities>
+ <capability>
+ <inputs>
+ <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.BaseToken</type>
+ <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation</type>
+ </inputs>
+ <outputs>
+ <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation</type>
+ </outputs>
+ <languagesSupported/>
+ </capability>
+ </capabilities>
+ <operationalProperties>
+ <modifiesCas>true</modifiesCas>
+ <multipleDeploymentAllowed>true</multipleDeploymentAllowed>
+ <outputsNewCASes>false</outputsNewCASes>
+ </operationalProperties>
+ </analysisEngineMetaData>
+ <externalResourceDependencies>
+ <externalResourceDependency>
+ <key>AssertionCuePhraseIndexReader</key>
+ <description/>
+ <interfaceName>org.apache.ctakes.core.resource.LuceneIndexReaderResource</interfaceName>
+ <optional>false</optional>
+ </externalResourceDependency>
+ </externalResourceDependencies>
+ <resourceManagerConfiguration>
+ <externalResources>
+ <externalResource>
+ <name>AssertionCuePhraseIndex</name>
+ <description/>
+ <configurableDataResourceSpecifier>
+ <url/>
+ <resourceMetaData>
+ <name/>
+ <configurationParameters>
+ <configurationParameter>
+ <name>UseMemoryIndex</name>
+ <type>Boolean</type>
+ <multiValued>false</multiValued>
+ <mandatory>true</mandatory>
+ </configurationParameter>
+ <configurationParameter>
+ <name>IndexDirectory</name>
+ <type>String</type>
+ <multiValued>false</multiValued>
+ <mandatory>true</mandatory>
+ </configurationParameter>
+ </configurationParameters>
+ <configurationParameterSettings>
+ <nameValuePair>
+ <name>UseMemoryIndex</name>
+ <value>
+ <boolean>true</boolean>
+ </value>
+ </nameValuePair>
+ <nameValuePair>
+ <name>IndexDirectory</name>
+ <value>
+ <string>org/apache/ctakes/dictionary/lookup/assertion_cue_phrase_index</string>
+ </value>
+ </nameValuePair>
+ </configurationParameterSettings>
+ </resourceMetaData>
+ </configurableDataResourceSpecifier>
+ <implementationName>org.apache.ctakes.core.resource.LuceneIndexReaderResourceImpl</implementationName>
+ </externalResource>
+ <externalResource>
+ <name>LookupDescriptorFile</name>
+ <description/>
+ <fileResourceSpecifier>
+ <fileUrl>file:org/apache/ctakes/dictionary/lookup/AssertionLookupDesc.xml</fileUrl>
+ </fileResourceSpecifier>
+ <implementationName>org.apache.ctakes.core.resource.FileResourceImpl</implementationName>
+ </externalResource>
+ </externalResources>
+ <externalResourceBindings>
+ <externalResourceBinding>
+ <key>LookupDescriptor</key>
+ <resourceName>LookupDescriptorFile</resourceName>
+ </externalResourceBinding>
+ <externalResourceBinding>
+ <key>AssertionCuePhraseIndexReader</key>
+ <resourceName>AssertionCuePhraseIndex</resourceName>
+ </externalResourceBinding>
+ </externalResourceBindings>
+ </resourceManagerConfiguration>
+</taeDescription>
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Added: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dictionary/lookup/AssertionLookupDesc.xml
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dictionary/lookup/AssertionLookupDesc.xml?rev=1588552&view=auto
==============================================================================
--- ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dictionary/lookup/AssertionLookupDesc.xml (added)
+++ ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dictionary/lookup/AssertionLookupDesc.xml Fri Apr 18 19:47:21 2014
@@ -0,0 +1,162 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+ Licensed to the Apache Software Foundation (ASF) under one
+ or more contributor license agreements. See the NOTICE file
+ distributed with this work for additional information
+ regarding copyright ownership. The ASF licenses this file
+ to you under the Apache License, Version 2.0 (the
+ "License"); you may not use this file except in compliance
+ with the License. You may obtain a copy of the License at
+
+ http://www.apache.org/licenses/LICENSE-2.0
+
+ Unless required by applicable law or agreed to in writing,
+ software distributed under the License is distributed on an
+ "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ KIND, either express or implied. See the License for the
+ specific language governing permissions and limitations
+ under the License.
+
+-->
+<lookupSpecification>
+ <!-- Defines what dictionaries will be used in terms of implementation specifics and metaField configuration. -->
+ <dictionaries>
+
+ <!--
+ <dictionary id="DICT_UMLS_MS" externalResourceKey="UmlsIndexReader" caseSensitive="false">
+ <implementation>
+ <luceneImpl/>
+ </implementation>
+ <lookupField fieldName="first_word"/>
+ <metaFields>
+ <metaField fieldName="cui"/>
+ <metaField fieldName="tui"/>
+ <metaField fieldName="text"/>
+ </metaFields>
+ </dictionary>
+ -->
+
+ <!--
+ <dictionary id="DICT_RXNORM" externalResourceKey="RxnormIndexReader" caseSensitive="false">
+ <implementation>
+ <luceneImpl/>
+ </implementation>
+ <lookupField fieldName="first_word"/>
+ <metaFields>
+ <metaField fieldName="code"/>
+ <metaField fieldName="preferred_designation"/>
+ <metaField fieldName="other_designation"/>
+ </metaFields>
+ </dictionary>
+ -->
+ <dictionary id="DICT_ASSERTION_CUE_PHRASE" externalResourceKey="AssertionCuePhraseIndexReader" caseSensitive="false">
+ <implementation>
+ <luceneImpl/>
+ </implementation>
+ <lookupField fieldName="cuePhrase"/>
+ <metaFields>
+ <metaField fieldName="cuePhrase"/>
+ <metaField fieldName="cuePhraseCategory"/>
+ <metaField fieldName="assertionCuePhraseFamily"/>
+ </metaFields>
+ </dictionary>
+
+
+ </dictionaries>
+ <!-- Binds together the components necessary to perform the complete lookup logic start to end. -->
+ <lookupBindings>
+
+ <!--
+ <lookupBinding>
+ <dictionaryRef idRef="DICT_UMLS_MS"/>
+ <lookupInitializer className="org.apache.ctakes.dictionary.lookup.ae.FirstTokenPermLookupInitializerImpl">
+ <properties>
+ <property key="textMetaFields" value="text"/>
+ <property key="maxPermutationLevel" value="5"/>
+ <!- - <property key="windowAnnotations" value="org.apache.ctakes.typesystem.type.textspan.Sentence"/> - ->
+ <property key="windowAnnotations" value="org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation"/>
+ <property key="exclusionTags" value="VB,VBD,VBG,VBN,VBP,VBZ,CC,CD,DT,EX,LS,MD,PDT,POS,PP,PP$,PRP,PRP$,RP,TO,WDT,WP,WPS,WRB"/>
+ </properties>
+ </lookupInitializer>
+ <lookupConsumer className="org.apache.ctakes.dictionary.lookup.ae.UmlsToSnomedLuceneConsumerImpl">
+ <properties>
+ <property key="codingScheme" value="SNOMED"/>
+ <property key="cuiMetaField" value="cui"/>
+ <property key="tuiMetaField" value="tui"/>
+ <property key="cuiMappingField" value="cui"/>
+ <property key="snomedCodeMappingField" value="code"/>
+ <!- - the following values are used as TUIs for testing: T_AS, T_PR, T_DD, T_SS - ->
+ <property key="anatomicalSiteTuis" value="T021,T022,T023,T024,T025,T026,T029,T030,T_AS"/>
+ <property key="procedureTuis" value="T059,T060,T061,T_PR"/>
+ <property key="disorderTuis" value="T019,T020,T037,T046,T047,T048,T049,T050,T190,T191,T_DD"/>
+ <property key="findingTuis" value="T033,T034,T040,T041,T042,T043,T044,T045,T046,T056,T057,T184,T_SS"/>
+ <property key="luceneFilterExtResrcKey" value="UmlsIndexReader"/>
+ </properties>
+ </lookupConsumer>
+ </lookupBinding>
+ -->
+
+ <!--
+ <lookupBinding>
+ <dictionaryRef idRef="DICT_RXNORM"/>
+ <lookupInitializer className="org.apache.ctakes.dictionary.lookup.ae.FirstTokenPermLookupInitializerImpl">
+ <properties>
+ <property key="textMetaFields" value="preferred_designation|other_designation"/>
+ <property key="maxPermutationLevel" value="7"/>
+ <!- - <property key="windowAnnotations" value="org.apache.ctakes.typesystem.type.textspan.Sentence"/> - ->
+ <property key="windowAnnotations" value="org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation"/>
+ <property key="exclusionTags" value="VB,VBD,VBG,VBN,VBP,VBZ,CC,CD,DT,EX,LS,MD,PDT,POS,PP,PP$,RP,TO,WDT,WP,WPS,WRB"/>
+ </properties>
+ </lookupInitializer>
+ <lookupConsumer className="org.apache.ctakes.dictionary.lookup.ae.OrangeBookFilterConsumerImpl">
+ <properties>
+ <property key="codingScheme" value="RXNORM"/>
+ <property key="codeMetaField" value="code"/>
+ <property key="luceneFilterExtResrcKey" value="OrangeBookIndexReader"/>
+ </properties>
+ </lookupConsumer>
+ </lookupBinding>
+ -->
+
+ <lookupBinding>
+ <dictionaryRef idRef="DICT_ASSERTION_CUE_PHRASE"/>
+ <!-- org.apache.ctakes.dictionary.lookup.ae.DirectLookupInitializerImpl -->
+ <!-- org.apache.ctakes.dictionary.lookup.ae.FirstTokenPermLookupInitializerImpl -->
+ <lookupInitializer className="org.apache.ctakes.dictionary.lookup.ae.DirectLookupInitializerImpl">
+ <properties>
+ <property key="textMetaFields" value="cuePhraseCategory"/>
+ <!-- <property key="maxPermutationLevel" value="7"/> -->
+ <!-- <property key="windowAnnotations" value="org.apache.ctakes.typesystem.type.textspan.Sentence"/> -->
+ <!-- org.apache.ctakes.typesystem.type.syntax.Chunk -->
+ <!-- org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation -->
+ <property key="windowAnnotations" value="org.apache.ctakes.typesystem.type.syntax.Chunk"/>
+ <!-- <property key="exclusionTags" value="VB,VBD,VBG,VBN,VBP,VBZ,CC,CD,DT,EX,LS,MD,PDT,POS,PP,PP$,RP,TO,WDT,WP,WPS,WRB"/> -->
+ </properties>
+ </lookupInitializer>
+<!--
+ <lookupInitializer className="org.apache.ctakes.dictionary.lookup.ae.FirstTokenPermLookupInitializerImpl">
+ <properties>
+ <property key="textMetaFields" value="cuePhraseCategory"/>
+ <property key="maxPermutationLevel" value="7"/>
+ <!- - <property key="windowAnnotations" value="org.apache.ctakes.typesystem.type.textspan.Sentence"/> - ->
+ <!- - org.apache.ctakes.typesystem.type.syntax.Chunk - ->
+ <!- - org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation - ->
+ <property key="windowAnnotations" value="org.apache.ctakes.typesystem.type.syntax.Chunk"/>
+ <!- - <property key="exclusionTags" value="VB,VBD,VBG,VBN,VBP,VBZ,CC,CD,DT,EX,LS,MD,PDT,POS,PP,PP$,RP,TO,WDT,WP,WPS,WRB"/> - ->
+ </properties>
+ </lookupInitializer>
+-->
+ <lookupConsumer className="org.apache.ctakes.dictionary.lookup.ae.AssertionCuePhraseConsumerImpl">
+ <properties>
+ <!--
+ <property key="codingScheme" value="RXNORM"/>
+ <property key="codeMetaField" value="code"/>
+ -->
+ <property key="luceneFilterExtResrcKey" value="AssertionCuePhraseIndexReader"/>
+ </properties>
+ </lookupConsumer>
+ </lookupBinding>
+
+ </lookupBindings>
+</lookupSpecification>
Propchange: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dictionary/lookup/AssertionLookupDesc.xml
------------------------------------------------------------------------------
svn:mime-type = text/plain
Added: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dictionary/lookup/LookupDesc.xml
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dictionary/lookup/LookupDesc.xml?rev=1588552&view=auto
==============================================================================
--- ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dictionary/lookup/LookupDesc.xml (added)
+++ ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dictionary/lookup/LookupDesc.xml Fri Apr 18 19:47:21 2014
@@ -0,0 +1,103 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+ Licensed to the Apache Software Foundation (ASF) under one
+ or more contributor license agreements. See the NOTICE file
+ distributed with this work for additional information
+ regarding copyright ownership. The ASF licenses this file
+ to you under the Apache License, Version 2.0 (the
+ "License"); you may not use this file except in compliance
+ with the License. You may obtain a copy of the License at
+
+ http://www.apache.org/licenses/LICENSE-2.0
+
+ Unless required by applicable law or agreed to in writing,
+ software distributed under the License is distributed on an
+ "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ KIND, either express or implied. See the License for the
+ specific language governing permissions and limitations
+ under the License.
+
+-->
+<lookupSpecification>
+ <!-- Defines what dictionaries will be used in terms of implementation specifics and metaField configuration. -->
+ <dictionaries>
+
+ <dictionary id="DICT_UMLS_MS" externalResourceKey="UmlsIndexReader" caseSensitive="false">
+ <implementation>
+ <luceneImpl/>
+ </implementation>
+ <lookupField fieldName="first_word"/>
+ <metaFields>
+ <metaField fieldName="cui"/>
+ <metaField fieldName="tui"/>
+ <metaField fieldName="text"/>
+ </metaFields>
+ </dictionary>
+
+ <dictionary id="DICT_RXNORM" externalResourceKey="RxnormIndexReader" caseSensitive="false">
+ <implementation>
+ <luceneImpl/>
+ </implementation>
+ <lookupField fieldName="first_word"/>
+ <metaFields>
+ <metaField fieldName="code"/>
+ <metaField fieldName="preferred_designation"/>
+ <metaField fieldName="other_designation"/>
+ </metaFields>
+ </dictionary>
+
+ </dictionaries>
+ <!-- Binds together the components necessary to perform the complete lookup logic start to end. -->
+ <lookupBindings>
+
+ <lookupBinding>
+ <dictionaryRef idRef="DICT_UMLS_MS"/>
+ <lookupInitializer className="org.apache.ctakes.dictionary.lookup.ae.FirstTokenPermLookupInitializerImpl">
+ <properties>
+ <property key="textMetaFields" value="text"/>
+ <property key="maxPermutationLevel" value="5"/>
+ <!-- <property key="windowAnnotations" value="org.apache.ctakes.typesystem.type.textspan.Sentence"/> -->
+ <property key="windowAnnotations" value="org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation"/>
+ <property key="exclusionTags" value="VB,VBD,VBG,VBN,VBP,VBZ,CC,CD,DT,EX,LS,MD,PDT,POS,PP,PP$,PRP,PRP$,RP,TO,WDT,WP,WPS,WRB"/>
+ </properties>
+ </lookupInitializer>
+ <lookupConsumer className="org.apache.ctakes.dictionary.lookup.ae.UmlsToSnomedLuceneConsumerImpl">
+ <properties>
+ <property key="codingScheme" value="SNOMED"/>
+ <property key="cuiMetaField" value="cui"/>
+ <property key="tuiMetaField" value="tui"/>
+ <property key="cuiMappingField" value="cui"/>
+ <property key="snomedCodeMappingField" value="code"/>
+ <!-- the following values are used as TUIs for testing: T_AS, T_PR, T_DD, T_SS -->
+ <property key="anatomicalSiteTuis" value="T021,T022,T023,T024,T025,T026,T029,T030,T_AS"/>
+ <property key="procedureTuis" value="T059,T060,T061,T_PR"/>
+ <property key="disorderTuis" value="T019,T020,T037,T046,T047,T048,T049,T050,T190,T191,T_DD"/>
+ <property key="findingTuis" value="T033,T034,T040,T041,T042,T043,T044,T045,T046,T056,T057,T184,T_SS"/>
+ <property key="luceneFilterExtResrcKey" value="UmlsIndexReader"/>
+ </properties>
+ </lookupConsumer>
+ </lookupBinding>
+
+ <lookupBinding>
+ <dictionaryRef idRef="DICT_RXNORM"/>
+ <lookupInitializer className="org.apache.ctakes.dictionary.lookup.ae.FirstTokenPermLookupInitializerImpl">
+ <properties>
+ <property key="textMetaFields" value="preferred_designation|other_designation"/>
+ <property key="maxPermutationLevel" value="7"/>
+ <!-- <property key="windowAnnotations" value="org.apache.ctakes.typesystem.type.textspan.Sentence"/> -->
+ <property key="windowAnnotations" value="org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation"/>
+ <property key="exclusionTags" value="VB,VBD,VBG,VBN,VBP,VBZ,CC,CD,DT,EX,LS,MD,PDT,POS,PP,PP$,RP,TO,WDT,WP,WPS,WRB"/>
+ </properties>
+ </lookupInitializer>
+ <lookupConsumer className="org.apache.ctakes.dictionary.lookup.ae.OrangeBookFilterConsumerImpl">
+ <properties>
+ <property key="codingScheme" value="RXNORM"/>
+ <property key="codeMetaField" value="code"/>
+ <property key="luceneFilterExtResrcKey" value="OrangeBookIndexReader"/>
+ </properties>
+ </lookupConsumer>
+ </lookupBinding>
+
+ </lookupBindings>
+</lookupSpecification>
Propchange: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dictionary/lookup/LookupDesc.xml
------------------------------------------------------------------------------
svn:mime-type = text/plain
Added: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dictionary/lookup/LookupDesc_Db.xml
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dictionary/lookup/LookupDesc_Db.xml?rev=1588552&view=auto
==============================================================================
--- ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dictionary/lookup/LookupDesc_Db.xml (added)
+++ ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dictionary/lookup/LookupDesc_Db.xml Fri Apr 18 19:47:21 2014
@@ -0,0 +1,102 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+ Licensed to the Apache Software Foundation (ASF) under one
+ or more contributor license agreements. See the NOTICE file
+ distributed with this work for additional information
+ regarding copyright ownership. The ASF licenses this file
+ to you under the Apache License, Version 2.0 (the
+ "License"); you may not use this file except in compliance
+ with the License. You may obtain a copy of the License at
+
+ http://www.apache.org/licenses/LICENSE-2.0
+
+ Unless required by applicable law or agreed to in writing,
+ software distributed under the License is distributed on an
+ "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ KIND, either express or implied. See the License for the
+ specific language governing permissions and limitations
+ under the License.
+
+-->
+<lookupSpecification>
+ <!-- Defines what dictionaries will be used in terms of implementation specifics and metaField configuration. -->
+ <dictionaries>
+
+ <dictionary id="DICT_UMLS_MS" externalResourceKey="DbConnection" caseSensitive="false">
+ <implementation>
+ <jdbcImpl tableName="umls_ms_2011ab"/>
+ </implementation>
+ <lookupField fieldName="fword"/>
+ <metaFields>
+ <metaField fieldName="cui"/>
+ <metaField fieldName="tui"/>
+ <metaField fieldName="text"/>
+ </metaFields>
+ </dictionary>
+
+ <dictionary id="DICT_RXNORM" externalResourceKey="RxnormIndexReader" caseSensitive="false">
+ <implementation>
+ <luceneImpl/>
+ </implementation>
+ <lookupField fieldName="first_word"/>
+ <metaFields>
+ <metaField fieldName="code"/>
+ <metaField fieldName="codeRxNorm"/>
+ <metaField fieldName="preferred_designation"/>
+ <metaField fieldName="other_designation"/>
+ </metaFields>
+ </dictionary>
+
+ </dictionaries>
+ <!-- Binds together the components necessary to perform the complete lookup logic start to end. -->
+ <lookupBindings>
+
+ <lookupBinding>
+ <dictionaryRef idRef="DICT_UMLS_MS"/>
+ <lookupInitializer className="org.apache.ctakes.dictionary.lookup.ae.FirstTokenPermLookupInitializerImpl">
+ <properties>
+ <property key="textMetaFields" value="text"/>
+ <property key="maxPermutationLevel" value="7"/>
+ <!-- <property key="windowAnnotations" value="org.apache.ctakes.typesystem.type.textspan.Sentence"/> -->
+ <property key="windowAnnotations" value="org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation"/>
+ <property key="exclusionTags" value="VB,VBD,VBG,VBN,VBP,VBZ,CC,CD,DT,EX,IN,LS,MD,PDT,POS,PP,PP$,PRP,PRP$,RP,TO,WDT,WP,WPS,WRB"/>
+ </properties>
+ </lookupInitializer>
+ <lookupConsumer className="org.apache.ctakes.dictionary.lookup.ae.UmlsToSnomedDbConsumerImpl">
+ <properties>
+ <property key="codingScheme" value="SNOMED"/>
+ <property key="cuiMetaField" value="cui"/>
+ <property key="tuiMetaField" value="tui"/>
+ <property key="anatomicalSiteTuis" value="T021,T022,T023,T024,T025,T026,T029,T030"/>
+ <property key="procedureTuis" value="T059,T060,T061"/>
+ <property key="disorderTuis" value="T019,T020,T037,T046,T047,T048,T049,T050,T190,T191"/>
+ <property key="findingTuis" value="T033,T034,T040,T041,T042,T043,T044,T045,T046,T056,T057,T184"/>
+ <property key="dbConnExtResrcKey" value="DbConnection"/>
+ <property key="mapPrepStmt" value="select code from umls_snomed_map where cui=?"/>
+ </properties>
+ </lookupConsumer>
+ </lookupBinding>
+
+ <lookupBinding>
+ <dictionaryRef idRef="DICT_RXNORM"/>
+ <lookupInitializer className="org.apache.ctakes.dictionary.lookup.ae.FirstTokenPermLookupInitializerImpl">
+ <properties>
+ <property key="textMetaFields" value="preferred_designation|other_designation"/>
+ <property key="maxPermutationLevel" value="7"/>
+ <!-- <property key="windowAnnotations" value="org.apache.ctakes.typesystem.type.textspan.Sentence"/> -->
+ <property key="windowAnnotations" value="org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation"/>
+ <property key="exclusionTags" value="VB,VBD,VBG,VBN,VBP,VBZ,CC,CD,DT,EX,LS,MD,PDT,POS,PP,PP$,RP,TO,WDT,WP,WPS,WRB"/>
+ </properties>
+ </lookupInitializer>
+ <lookupConsumer className="org.apache.ctakes.dictionary.lookup.ae.OrangeBookFilterConsumerImpl">
+ <properties>
+ <property key="codingScheme" value="RXNORM"/>
+ <property key="codeMetaField" value="codeRxNorm"/> <!-- Use value="code" for UMLS CUIs -->
+ <property key="luceneFilterExtResrcKey" value="OrangeBookIndexReader"/>
+ </properties>
+ </lookupConsumer>
+ </lookupBinding>
+
+ </lookupBindings>
+</lookupSpecification>
Propchange: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dictionary/lookup/LookupDesc_Db.xml
------------------------------------------------------------------------------
svn:mime-type = text/plain
Added: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dictionary/lookup/LookupDesc_csv_sample.xml
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dictionary/lookup/LookupDesc_csv_sample.xml?rev=1588552&view=auto
==============================================================================
--- ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dictionary/lookup/LookupDesc_csv_sample.xml (added)
+++ ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dictionary/lookup/LookupDesc_csv_sample.xml Fri Apr 18 19:47:21 2014
@@ -0,0 +1,81 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+ Licensed to the Apache Software Foundation (ASF) under one
+ or more contributor license agreements. See the NOTICE file
+ distributed with this work for additional information
+ regarding copyright ownership. The ASF licenses this file
+ to you under the Apache License, Version 2.0 (the
+ "License"); you may not use this file except in compliance
+ with the License. You may obtain a copy of the License at
+
+ http://www.apache.org/licenses/LICENSE-2.0
+
+ Unless required by applicable law or agreed to in writing,
+ software distributed under the License is distributed on an
+ "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ KIND, either express or implied. See the License for the
+ specific language governing permissions and limitations
+ under the License.
+
+-->
+<lookupSpecification>
+ <!-- Defines what dictionaries will be used in terms of implementation specifics and metaField configuration. -->
+ <dictionaries>
+ <dictionary id="DICT_CSV_SAMPLE" externalResourceKey="DictionaryFile" caseSensitive="false">
+ <implementation>
+ <csvImpl delimiter="|" indexedFieldNames="0,1"/>
+ </implementation>
+ <lookupField fieldName="0"/>
+ <metaFields>
+ <metaField fieldName="1"/>
+ </metaFields>
+ </dictionary>
+ <dictionary id="DICT_RXNORM" externalResourceKey="RxnormIndexReader" caseSensitive="false">
+ <implementation>
+ <luceneImpl/>
+ </implementation>
+ <lookupField fieldName="first_word"/>
+ <metaFields>
+ <metaField fieldName="code"/>
+ <metaField fieldName="preferred_designation"/>
+ <metaField fieldName="other_designation"/>
+ </metaFields>
+ </dictionary>
+ </dictionaries>
+ <!-- Binds together the components necessary to perform the complete lookup logic start to end. -->
+ <lookupBindings>
+ <lookupBinding>
+ <dictionaryRef idRef="DICT_CSV_SAMPLE"/>
+
+<!-- NOTE: Only use if windowAnnotations have small # of tokens, sentences are not a good idea! -->
+
+ <lookupInitializer className="org.apache.ctakes.dictionary.lookup.ae.DirectLookupInitializerImpl">
+ <properties>
+ </properties>
+ </lookupInitializer>
+ <lookupConsumer className="org.apache.ctakes.dictionary.lookup.ae.NamedEntityLookupConsumerImpl">
+ <properties>
+ </properties>
+ </lookupConsumer>
+ </lookupBinding>
+ <lookupBinding>
+ <dictionaryRef idRef="DICT_RXNORM"/>
+ <lookupInitializer className="org.apache.ctakes.dictionary.lookup.ae.FirstTokenPermLookupInitializerImpl">
+ <properties>
+ <property key="textMetaFields" value="preferred_designation|other_designation"/>
+ <property key="maxPermutationLevel" value="7"/>
+ <property key="windowAnnotations" value="org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation"/>
+ <property key="exclusionTags" value="VB,VBD,VBG,VBN,VBP,VBZ,CC,CD,DT,EX,LS,MD,PDT,POS,PP,PP$,RP,TO,WDT,WP,WPS,WRB"/>
+ </properties>
+ </lookupInitializer>
+ <lookupConsumer className="org.apache.ctakes.dictionary.lookup.ae.OrangeBookFilterConsumerImpl">
+ <properties>
+ <property key="codingScheme" value="RXNORM"/>
+ <property key="codeMetaField" value="code"/>
+ <property key="luceneFilterExtResrcKey" value="OrangeBookIndexReader"/>
+ </properties>
+ </lookupConsumer>
+ </lookupBinding>
+ </lookupBindings>
+</lookupSpecification>
Propchange: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dictionary/lookup/LookupDesc_csv_sample.xml
------------------------------------------------------------------------------
svn:mime-type = text/plain
Added: ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dictionary/lookup/LookupDesc_example_using_CSV.xml
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dictionary/lookup/LookupDesc_example_using_CSV.xml?rev=1588552&view=auto
==============================================================================
--- ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dictionary/lookup/LookupDesc_example_using_CSV.xml (added)
+++ ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dictionary/lookup/LookupDesc_example_using_CSV.xml Fri Apr 18 19:47:21 2014
@@ -0,0 +1,52 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+ Licensed to the Apache Software Foundation (ASF) under one
+ or more contributor license agreements. See the NOTICE file
+ distributed with this work for additional information
+ regarding copyright ownership. The ASF licenses this file
+ to you under the Apache License, Version 2.0 (the
+ "License"); you may not use this file except in compliance
+ with the License. You may obtain a copy of the License at
+
+ http://www.apache.org/licenses/LICENSE-2.0
+
+ Unless required by applicable law or agreed to in writing,
+ software distributed under the License is distributed on an
+ "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ KIND, either express or implied. See the License for the
+ specific language governing permissions and limitations
+ under the License.
+
+-->
+<lookupSpecification>
+ <!-- Defines what dictionaries will be used in terms of implementation specifics and metaField configuration. -->
+ <dictionaries>
+ <dictionary id="DICT_CSV_SAMPLE" externalResourceKey="CSV_FILE" caseSensitive="false">
+ <implementation>
+ <csvImpl delimiter="|" indexedFieldNames="0,1"/>
+ </implementation>
+ <lookupField fieldName="0"/>
+ <metaFields>
+ <metaField fieldName="1"/>
+ </metaFields>
+ </dictionary>
+ </dictionaries>
+ <!-- Binds together the components necessary to perform the complete lookup logic start to end. -->
+ <lookupBindings>
+ <lookupBinding>
+ <dictionaryRef idRef="DICT_CSV_SAMPLE"/>
+
+<!-- NOTE: Only use if windowAnnotations have small # of tokens, sentences are not a good idea! -->
+
+ <lookupInitializer className="org.apache.ctakes.dictionary.lookup.ae.DirectLookupInitializerImpl">
+ <properties>
+ </properties>
+ </lookupInitializer>
+ <lookupConsumer className="org.apache.ctakes.dictionary.lookup.ae.DebugConsumerImpl">
+ <properties>
+ </properties>
+ </lookupConsumer>
+ </lookupBinding>
+ </lookupBindings>
+</lookupSpecification>
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--- ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dictionary/lookup/dictionary1.csv (added)
+++ ctakes/sandbox/ctakes-web-client/src/main/resources/org/apache/ctakes/dictionary/lookup/dictionary1.csv Fri Apr 18 19:47:21 2014
@@ -0,0 +1,16 @@
+ankle|ankle
+aspirin|aspirin
+cm|cm
+cm|cm is a synonym of a UMLS term Cutaneous Mastocytosis which is in SNOMED but cm is not by itself
+hyperlipidemia|hyperlipidemia
+knee|knee
+knee|knee pain
+ld|ld
+ld|ld SNOMED procedure C0011911
+medical|medical nutrition therapy
+nutrition|nutrition
+nutrition|nutrition therapy
+pain|pain
+pain|pain, chronic
+weight|weight gain
+
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