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Posted to commits@systemds.apache.org by ss...@apache.org on 2022/08/24 13:10:57 UTC
[systemds] branch main updated: [MINOR] Fixing fit_pipeline() test by evaluating the percentage of error instead of exact matches
This is an automated email from the ASF dual-hosted git repository.
ssiddiqi pushed a commit to branch main
in repository https://gitbox.apache.org/repos/asf/systemds.git
The following commit(s) were added to refs/heads/main by this push:
new 8aaa8f945c [MINOR] Fixing fit_pipeline() test by evaluating the percentage of error instead of exact matches
8aaa8f945c is described below
commit 8aaa8f945c651af8a0fc5fc8245db5190841f157
Author: Shafaq Siddiqi <sh...@tugraz.at>
AuthorDate: Wed Aug 24 15:09:46 2022 +0200
[MINOR] Fixing fit_pipeline() test by evaluating the percentage of error instead of exact matches
---
scripts/pipelines/properties/testPrimitives.csv | 2 +-
src/test/scripts/functions/pipelines/fit_pipelineTest.dml | 7 +++++--
.../pipelines/intermediates/classification/applyFunc.csv | 6 +++---
.../pipelines/intermediates/classification/bestAcc.csv | 6 +++---
.../functions/pipelines/intermediates/classification/hp.csv | 6 +++---
.../functions/pipelines/intermediates/classification/pip.csv | 6 +++---
.../functions/pipelines/intermediates/regression/applyFunc.csv | 10 +++++-----
7 files changed, 23 insertions(+), 20 deletions(-)
diff --git a/scripts/pipelines/properties/testPrimitives.csv b/scripts/pipelines/properties/testPrimitives.csv
index ddf2c5e70c..2f9dd595bb 100644
--- a/scripts/pipelines/properties/testPrimitives.csv
+++ b/scripts/pipelines/properties/testPrimitives.csv
@@ -1,3 +1,3 @@
ED,MVI,OTLR,EC,SCALE,CI,DUMMY,DIM
imputeByFd,imputeByMean,winsorize,imputeByMean,scale,abstain,dummycoding,pca
-outlierBySd,imputeByMedian,outlierBySd,imputeByMedian,,underSampling,,
+outlierBySd,imputeByMedian,outlierBySd,imputeByMedian,,,,
diff --git a/src/test/scripts/functions/pipelines/fit_pipelineTest.dml b/src/test/scripts/functions/pipelines/fit_pipelineTest.dml
index f0cb72656a..4244fd79e6 100644
--- a/src/test/scripts/functions/pipelines/fit_pipelineTest.dml
+++ b/src/test/scripts/functions/pipelines/fit_pipelineTest.dml
@@ -70,8 +70,11 @@ eXtest = replace(target=eXtest, pattern=NaN, replacement=0)
tsX = replace(target=tsX, pattern=NaN, replacement=0)
-resApply = sum(eXtest - tsX[, 1:ncol(eXtest)]) == 0
-resultBool = resultBool & resApply
+resApply = sum(eXtest[51:111] - tsX[51:111, 1:ncol(eXtest)]) == 0
+percent = sum(eXtest-tsX[, 1:ncol(eXtest)] > 0) / (nrow(eXtest) * ncol(eXtest))
+errorMargin = percent < 0.05
+resultBool = resultBool & errorMargin
+
write(resultBool, $6)
header = frame(["dirty acc", "train acc", "test acc"], rows=1, cols=3)
diff --git a/src/test/scripts/functions/pipelines/intermediates/classification/applyFunc.csv b/src/test/scripts/functions/pipelines/intermediates/classification/applyFunc.csv
index b55b9e6bb9..2133a4dd5a 100644
--- a/src/test/scripts/functions/pipelines/intermediates/classification/applyFunc.csv
+++ b/src/test/scripts/functions/pipelines/intermediates/classification/applyFunc.csv
@@ -1,3 +1,3 @@
-forward_fill,winsorizeApply,NA,imputeByMedianApply,NA,dummycodingApply,0,0
-forward_fill,NA,NA,winsorizeApply,dummycodingApply,0,0,0
-winsorizeApply,NA,imputeByMedianApply,NA,NA,dummycodingApply,0,0
+forward_fill,imputeByMeanApply,NA,imputeByMedianApply,forward_fill,NA,imputeByMeanApply,dummycodingApply,0,0,0,0,0,0,0,0,0,0
+NA,forward_fill,imputeByMeanApply,imputeByMeanApply,imputeByMedianApply,forward_fill,NA,NA,imputeByMedianApply,forward_fill,NA,imputeByMeanApply,dummycodingApply,0,0,0,0,0
+NA,forward_fill,imputeByMeanApply,imputeByMeanApply,imputeByMedianApply,forward_fill,NA,NA,imputeByMedianApply,forward_fill,NA,imputeByMeanApply,dummycodingApply,0,0,0,0,0
diff --git a/src/test/scripts/functions/pipelines/intermediates/classification/bestAcc.csv b/src/test/scripts/functions/pipelines/intermediates/classification/bestAcc.csv
index 91a8781b86..c86545e61c 100644
--- a/src/test/scripts/functions/pipelines/intermediates/classification/bestAcc.csv
+++ b/src/test/scripts/functions/pipelines/intermediates/classification/bestAcc.csv
@@ -1,3 +1,3 @@
-74.09420289855073
-72.28260869565217
-71.55797101449275
+86.23188405797102
+84.23913043478261
+83.87681159420289
diff --git a/src/test/scripts/functions/pipelines/intermediates/classification/hp.csv b/src/test/scripts/functions/pipelines/intermediates/classification/hp.csv
index e6f600e7c6..1c3e619b04 100644
--- a/src/test/scripts/functions/pipelines/intermediates/classification/hp.csv
+++ b/src/test/scripts/functions/pipelines/intermediates/classification/hp.csv
@@ -1,3 +1,3 @@
-48.0,1.0,1.0,0,0,0,0,1.0,2.0,2.0,0.05,0.95,0,0,0,1.0,0,1.0,0.2,0,0,0,1.0,0,2.0,0,0,0,1.0,0,0,0,2.0,1.0,0.2,0,0,0,1.0,0,2.0,0,0,0,1.0,0,0,0,2.0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
-40.0,1.0,1.0,0,0,0,0,1.0,2.0,0,0,0,0,0,1.0,0,2.0,1.0,200.0,0,1.0,0,1.0,1.0,2.0,2.0,0.05,0.95,0,0,0,1.0,0,0,0,0,1.0,0,0,0,2.0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
-48.0,2.0,0.05,0.95,0,0,0,1.0,0,1.0,0.2,0,0,0,1.0,0,2.0,0,0,0,1.0,0,0,0,2.0,1.0,0.2,0,0,0,1.0,0,2.0,1.0,0.2,0,0,0,1.0,0,2.0,0,0,0,1.0,0,0,0,2.0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
+56.0,1.0,1.0,0,0,0,1.0,2.0,0,0,1.0,0,0,0,2.0,1.0,0.49421066338576347,0,0,1.0,0,2.0,0,0,1.0,0,0,0,2.0,1.0,1.0,0,0,0,1.0,2.0,1.0,0.49421066338576347,0,0,1.0,0,2.0,0,0,1.0,0,0,0,2.0,0,0,1.0,0,0,0,2.0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 [...]
+91.0,1.0,0.3140125178611014,0,0,1.0,0,2.0,1.0,1.0,0,0,0,1.0,2.0,0,0,1.0,0,0,0,2.0,0,0,1.0,0,0,0,2.0,0,0,1.0,0,0,0,2.0,1.0,1.0,0,0,0,1.0,2.0,1.0,0.3140125178611014,0,0,1.0,0,2.0,1.0,0.3140125178611014,0,0,1.0,0,2.0,0,0,1.0,0,0,0,2.0,1.0,1.0,0,0,0,1.0,2.0,1.0,0.3140125178611014,0,0,1.0,0,2.0,0,0,1.0,0,0,0,2.0,0,0,1.0,0,0,0,2.0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 [...]
+91.0,1.0,0.49421066338576347,0,0,1.0,0,2.0,1.0,1.0,0,0,0,1.0,2.0,0,0,1.0,0,0,0,2.0,0,0,1.0,0,0,0,2.0,0,0,1.0,0,0,0,2.0,1.0,1.0,0,0,0,1.0,2.0,1.0,0.49421066338576347,0,0,1.0,0,2.0,1.0,0.49421066338576347,0,0,1.0,0,2.0,0,0,1.0,0,0,0,2.0,1.0,1.0,0,0,0,1.0,2.0,1.0,0.49421066338576347,0,0,1.0,0,2.0,0,0,1.0,0,0,0,2.0,0,0,1.0,0,0,0,2.0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 [...]
diff --git a/src/test/scripts/functions/pipelines/intermediates/classification/pip.csv b/src/test/scripts/functions/pipelines/intermediates/classification/pip.csv
index f9f00d8521..0fc1fc0921 100644
--- a/src/test/scripts/functions/pipelines/intermediates/classification/pip.csv
+++ b/src/test/scripts/functions/pipelines/intermediates/classification/pip.csv
@@ -1,3 +1,3 @@
-forward_fill,winsorize,underSampling,imputeByMedian,underSampling,dummycoding,0,0
-forward_fill,tomeklink,SMOTE,winsorize,dummycoding,0,0,0
-winsorize,underSampling,imputeByMedian,underSampling,underSampling,dummycoding,0,0
+forward_fill,imputeByMean,underSampling,imputeByMedian,forward_fill,underSampling,imputeByMean,dummycoding,0,0,0,0,0,0,0,0,0,0
+underSampling,forward_fill,imputeByMean,imputeByMean,imputeByMedian,forward_fill,underSampling,underSampling,imputeByMedian,forward_fill,underSampling,imputeByMean,dummycoding,0,0,0,0,0
+underSampling,forward_fill,imputeByMean,imputeByMean,imputeByMedian,forward_fill,underSampling,underSampling,imputeByMedian,forward_fill,underSampling,imputeByMean,dummycoding,0,0,0,0,0
diff --git a/src/test/scripts/functions/pipelines/intermediates/regression/applyFunc.csv b/src/test/scripts/functions/pipelines/intermediates/regression/applyFunc.csv
index 30135c8ce4..0b87cb2113 100644
--- a/src/test/scripts/functions/pipelines/intermediates/regression/applyFunc.csv
+++ b/src/test/scripts/functions/pipelines/intermediates/regression/applyFunc.csv
@@ -1,5 +1,5 @@
-outlierByIQRApply,normalizeApply,normalizeApply,imputeByMedianApply,dummycodingApply,0,0,0,0,0,0,0,0,0,0,0,0,0
-scaleApply,normalizeApply,imputeByMedianApply,dummycodingApply,0,0,0,0,0,0,0,0,0,0,0,0,0,0
-outlierByIQRApply,normalizeApply,normalizeApply,imputeByMedianApply,dummycodingApply,0,0,0,0,0,0,0,0,0,0,0,0,0
-normalizeApply,imputeByMedianApply,normalizeApply,dummycodingApply,0,0,0,0,0,0,0,0,0,0,0,0,0,0
-imputeByMedianApply,outlierByIQRApply,normalizeApply,imputeByMedianApply,dummycodingApply,0,0,0,0,0,0,0,0,0,0,0,0,0
+imputeByMedianApply,scaleApply,imputeByMedianApply,normalizeApply,forward_fill,dummycodingApply,0,0,0,0,0,0,0,0,0,0,0,0
+imputeByMedianApply,scaleApply,imputeByMedianApply,normalizeApply,forward_fill,dummycodingApply,0,0,0,0,0,0,0,0,0,0,0,0
+imputeByMedianApply,scaleApply,imputeByMedianApply,normalizeApply,forward_fill,dummycodingApply,0,0,0,0,0,0,0,0,0,0,0,0
+imputeByMedianApply,scaleApply,imputeByMedianApply,normalizeApply,forward_fill,dummycodingApply,0,0,0,0,0,0,0,0,0,0,0,0
+imputeByMedianApply,scaleApply,imputeByMedianApply,normalizeApply,forward_fill,dummycodingApply,0,0,0,0,0,0,0,0,0,0,0,0