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Posted to commits@taverna.apache.org by st...@apache.org on 2015/02/17 21:45:36 UTC

[05/51] [partial] incubator-taverna-workbench git commit: temporarily empty repository

http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/blob/dc466d6d/taverna-workbench-perspective-biocatalogue/src/main/xsd/xlink.xsd
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diff --git a/taverna-workbench-perspective-biocatalogue/src/main/xsd/xlink.xsd b/taverna-workbench-perspective-biocatalogue/src/main/xsd/xlink.xsd
deleted file mode 100644
index 6c2034b..0000000
--- a/taverna-workbench-perspective-biocatalogue/src/main/xsd/xlink.xsd
+++ /dev/null
@@ -1,83 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!-- METS XLink Schema, v. 2, Nov. 15, 2004 -->
-<!--  Downloaded from http://www.loc.gov/standards/mets/xlink.xsd at 2007-04-19 -->
-<!--  Downloaded from http://taverna.cvs.sf.net/viewvc/taverna/taverna-service/taverna-interface/src/main/resources/xlink.xsd?view=log at 2009-10-19 -->
-<schema targetNamespace="http://www.w3.org/1999/xlink" xmlns="http://www.w3.org/2001/XMLSchema" xmlns:xlink="http://www.w3.org/1999/xlink" elementFormDefault="qualified">
-  <!--  global attributes  --> 
-  <attribute name="href"  type="anyURI"/>
-  <attribute name="role" type="string"/>
-  <attribute name="arcrole" type="string"/>
-  <attribute name="title" type="string" /> 
-  <attribute name="show">
-    <simpleType>
-
-      <restriction base="string">
-	<enumeration value="new" /> 
-	<enumeration value="replace" /> 
-	<enumeration value="embed" /> 
-	<enumeration value="other" /> 
-	<enumeration value="none" /> 
-      </restriction>
-    </simpleType>
-  </attribute>
-  <attribute name="actuate">
-    <simpleType>
-
-      <restriction base="string">
-	<enumeration value="onLoad" /> 
-	<enumeration value="onRequest" /> 
-	<enumeration value="other" /> 
-	<enumeration value="none" /> 
-      </restriction>
-    </simpleType>
-  </attribute>
-  <attribute name="label" type="string" /> 
-  <attribute name="from" type="string" /> 
-  <attribute name="to" type="string" /> 
-  <attributeGroup name="simpleLink">
-
-    <attribute name="type" type="string" fixed="simple" form="qualified" /> 
-    <attribute ref="xlink:href" use="optional" /> 
-    <attribute ref="xlink:role" use="optional" /> 
-    <attribute ref="xlink:arcrole" use="optional" /> 
-    <attribute ref="xlink:title" use="optional" /> 
-    <attribute ref="xlink:show" use="optional" /> 
-    <attribute ref="xlink:actuate" use="optional" /> 
-  </attributeGroup>
-  <attributeGroup name="extendedLink">
-    <attribute name="type" type="string" fixed="extended" form="qualified" /> 
-    <attribute ref="xlink:role" use="optional" /> 
-    <attribute ref="xlink:title" use="optional" /> 
-  </attributeGroup>
-  <attributeGroup name="locatorLink">
-
-    <attribute name="type" type="string" fixed="locator" form="qualified" /> 
-    <attribute ref="xlink:href" use="required" /> 
-    <attribute ref="xlink:role" use="optional" /> 
-    <attribute ref="xlink:title" use="optional" /> 
-    <attribute ref="xlink:label" use="optional" /> 
-  </attributeGroup>
-  <attributeGroup name="arcLink">
-    <attribute name="type" type="string" fixed="arc" form="qualified" /> 
-    <attribute ref="xlink:arcrole" use="optional" /> 
-    <attribute ref="xlink:title" use="optional" /> 
-    <attribute ref="xlink:show" use="optional" /> 
-    <attribute ref="xlink:actuate" use="optional" /> 
-    <attribute ref="xlink:from" use="optional" /> 
-    <attribute ref="xlink:to" use="optional" /> 
-  </attributeGroup>
-
-  <attributeGroup name="resourceLink">
-    <attribute name="type" type="string" fixed="resource" form="qualified" /> 
-    <attribute ref="xlink:role" use="optional" /> 
-    <attribute ref="xlink:title" use="optional" /> 
-    <attribute ref="xlink:label" use="optional" /> 
-  </attributeGroup>
-  <attributeGroup name="titleLink">
-    <attribute name="type" type="string" fixed="title" form="qualified" /> 
-  </attributeGroup>
-  <attributeGroup name="emptyLink">
-    <attribute name="type" type="string" fixed="none" form="qualified" /> 
-  </attributeGroup>
-
-</schema>

http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/blob/dc466d6d/taverna-workbench-perspective-design/pom.xml
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diff --git a/taverna-workbench-perspective-design/pom.xml b/taverna-workbench-perspective-design/pom.xml
deleted file mode 100644
index cde090a..0000000
--- a/taverna-workbench-perspective-design/pom.xml
+++ /dev/null
@@ -1,83 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
-	xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
-	<modelVersion>4.0.0</modelVersion>
-	<parent>
-		<groupId>net.sf.taverna.t2</groupId>
-		<artifactId>ui-components</artifactId>
-		<version>2.0-SNAPSHOT</version>
-	</parent>
-	<groupId>net.sf.taverna.t2.ui-components</groupId>
-	<artifactId>perspective-design</artifactId>
-	<packaging>bundle</packaging>
-	<name>Design perspective</name>
-	<dependencies>
-		<dependency>
-			<groupId>net.sf.taverna.t2.ui-api</groupId>
-			<artifactId>edits-api</artifactId>
-			<version>${t2.ui.api.version}</version>
-		</dependency>
-		<dependency>
-			<groupId>net.sf.taverna.t2.ui-api</groupId>
-			<artifactId>file-api</artifactId>
-			<version>${t2.ui.api.version}</version>
-		</dependency>
-		<dependency>
-			<groupId>net.sf.taverna.t2.ui-api</groupId>
-			<artifactId>menu-api</artifactId>
-			<version>${t2.ui.api.version}</version>
-		</dependency>
-		<dependency>
-			<groupId>net.sf.taverna.t2.ui-api</groupId>
-			<artifactId>report-api</artifactId>
-			<version>${t2.ui.api.version}</version>
-		</dependency>
-		<dependency>
-			<groupId>net.sf.taverna.t2.ui-api</groupId>
-			<artifactId>selection-api</artifactId>
-			<version>${t2.ui.api.version}</version>
-		</dependency>
-		<dependency>
-			<groupId>net.sf.taverna.t2.ui-api</groupId>
-			<artifactId>workbench-api</artifactId>
-			<version>${t2.ui.api.version}</version>
-		</dependency>
-		<dependency>
-			<groupId>net.sf.taverna.t2.ui-components</groupId>
-			<artifactId>activity-palette-ui</artifactId>
-			<version>${t2.ui.components.version}</version>
-		</dependency>
-		<dependency>
-			<groupId>net.sf.taverna.t2.ui-components</groupId>
-			<artifactId>graph-view</artifactId>
-			<version>${t2.ui.components.version}</version>
-		</dependency>
-		<dependency>
-			<groupId>net.sf.taverna.t2.ui-components</groupId>
-			<artifactId>workflow-explorer</artifactId>
-			<version>${t2.ui.components.version}</version>
-		</dependency>
-		<!-- <dependency>
-			<groupId>net.sf.taverna.t2.ui-components</groupId>
-			<artifactId>report-view</artifactId>
-			<version>${t2.ui.components.version}</version>
-		</dependency> -->
-		<dependency>
-			<groupId>net.sf.taverna.t2.lang</groupId>
-			<artifactId>ui</artifactId>
-			<version>${t2.lang.version}</version>
-		</dependency>
-
-		<dependency>
-			<groupId>net.sf.taverna.t2.ui-impl</groupId>
-			<artifactId>contextual-views-impl</artifactId>
-			<version>${t2.ui.impl.version}</version>
-		</dependency>
-
-		<dependency>
-			<groupId>uk.org.taverna.configuration</groupId>
-			<artifactId>taverna-app-configuration-api</artifactId>
-			<version>${taverna.configuration.version}</version>
-		</dependency>
-	</dependencies>
-</project>

http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/blob/dc466d6d/taverna-workbench-perspective-design/src/main/java/net/sf/taverna/t2/ui/perspectives/design/DesignPerspective.java
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diff --git a/taverna-workbench-perspective-design/src/main/java/net/sf/taverna/t2/ui/perspectives/design/DesignPerspective.java b/taverna-workbench-perspective-design/src/main/java/net/sf/taverna/t2/ui/perspectives/design/DesignPerspective.java
deleted file mode 100644
index eca98d4..0000000
--- a/taverna-workbench-perspective-design/src/main/java/net/sf/taverna/t2/ui/perspectives/design/DesignPerspective.java
+++ /dev/null
@@ -1,118 +0,0 @@
-/*******************************************************************************
- * Copyright (C) 2007 The University of Manchester
- *
- *  Modifications to the initial code base are copyright of their
- *  respective authors, or their employers as appropriate.
- *
- *  This program is free software; you can redistribute it and/or
- *  modify it under the terms of the GNU Lesser General Public License
- *  as published by the Free Software Foundation; either version 2.1 of
- *  the License, or (at your option) any later version.
- *
- *  This program is distributed in the hope that it will be useful, but
- *  WITHOUT ANY WARRANTY; without even the implied warranty of
- *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
- *  Lesser General Public License for more details.
- *
- *  You should have received a copy of the GNU Lesser General Public
- *  License along with this program; if not, write to the Free Software
- *  Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307
- ******************************************************************************/
-package net.sf.taverna.t2.ui.perspectives.design;
-
-import static net.sf.taverna.t2.workbench.icons.WorkbenchIcons.editIcon;
-
-import javax.swing.ImageIcon;
-import javax.swing.JComponent;
-
-import net.sf.taverna.t2.ui.menu.MenuManager;
-import net.sf.taverna.t2.workbench.edits.EditManager;
-import net.sf.taverna.t2.workbench.file.FileManager;
-import net.sf.taverna.t2.workbench.selection.SelectionManager;
-import net.sf.taverna.t2.workbench.ui.zaria.PerspectiveSPI;
-import net.sf.taverna.t2.workbench.ui.zaria.UIComponentFactorySPI;
-
-public class DesignPerspective implements PerspectiveSPI {
-	private DesignPerspectiveComponent designPerspectiveComponent;
-	private UIComponentFactorySPI graphViewComponentFactory;
-	private UIComponentFactorySPI servicePanelComponentFactory;
-	private UIComponentFactorySPI contextualViewComponentFactory;
-	private UIComponentFactorySPI workflowExplorerFactory;
-	private UIComponentFactorySPI reportViewComponentFactory;
-	private FileManager fileManager;
-	private SelectionManager selectionManager;
-	private MenuManager menuManager;
-	private EditManager editManager;
-
-	@Override
-	public String getID() {
-		return DesignPerspective.class.getName();
-	}
-
-	@Override
-	public JComponent getPanel() {
-		if (designPerspectiveComponent == null)
-			designPerspectiveComponent = new DesignPerspectiveComponent(
-					graphViewComponentFactory, servicePanelComponentFactory,
-					contextualViewComponentFactory, workflowExplorerFactory,
-					reportViewComponentFactory, fileManager, selectionManager,
-					menuManager, editManager);
-		return designPerspectiveComponent;
-	}
-
-	@Override
-	public ImageIcon getButtonIcon() {
-		return editIcon;
-	}
-
-	@Override
-	public String getText() {
-		return "Design";
-	}
-
-	@Override
-	public int positionHint() {
-		return 10;
-	}
-
-	public void setGraphViewComponentFactory(
-			UIComponentFactorySPI graphViewComponentFactory) {
-		this.graphViewComponentFactory = graphViewComponentFactory;
-	}
-
-	public void setServicePanelComponentFactory(
-			UIComponentFactorySPI servicePanelComponentFactory) {
-		this.servicePanelComponentFactory = servicePanelComponentFactory;
-	}
-
-	public void setContextualViewComponentFactory(
-			UIComponentFactorySPI contextualViewComponentFactory) {
-		this.contextualViewComponentFactory = contextualViewComponentFactory;
-	}
-
-	public void setWorkflowExplorerFactory(
-			UIComponentFactorySPI workflowExplorerFactory) {
-		this.workflowExplorerFactory = workflowExplorerFactory;
-	}
-
-	public void setReportViewComponentFactory(
-			UIComponentFactorySPI reportViewComponentFactory) {
-		this.reportViewComponentFactory = reportViewComponentFactory;
-	}
-
-	public void setFileManager(FileManager fileManager) {
-		this.fileManager = fileManager;
-	}
-
-	public void setSelectionManager(SelectionManager selectionManager) {
-		this.selectionManager = selectionManager;
-	}
-
-	public void setMenuManager(MenuManager menuManager) {
-		this.menuManager = menuManager;
-	}
-
-	public void setEditManager(EditManager editManager) {
-		this.editManager = editManager;
-	}
-}

http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/blob/dc466d6d/taverna-workbench-perspective-design/src/main/java/net/sf/taverna/t2/ui/perspectives/design/DesignPerspectiveComponent.java
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diff --git a/taverna-workbench-perspective-design/src/main/java/net/sf/taverna/t2/ui/perspectives/design/DesignPerspectiveComponent.java b/taverna-workbench-perspective-design/src/main/java/net/sf/taverna/t2/ui/perspectives/design/DesignPerspectiveComponent.java
deleted file mode 100644
index 37df0ac..0000000
--- a/taverna-workbench-perspective-design/src/main/java/net/sf/taverna/t2/ui/perspectives/design/DesignPerspectiveComponent.java
+++ /dev/null
@@ -1,115 +0,0 @@
-/*******************************************************************************
- * Copyright (C) 2011 The University of Manchester
- *
- *  Modifications to the initial code base are copyright of their
- *  respective authors, or their employers as appropriate.
- *
- *  This program is free software; you can redistribute it and/or
- *  modify it under the terms of the GNU Lesser General Public License
- *  as published by the Free Software Foundation; either version 2.1 of
- *  the License, or (at your option) any later version.
- *
- *  This program is distributed in the hope that it will be useful, but
- *  WITHOUT ANY WARRANTY; without even the implied warranty of
- *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
- *  Lesser General Public License for more details.
- *
- *  You should have received a copy of the GNU Lesser General Public
- *  License along with this program; if not, write to the Free Software
- *  Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307
- ******************************************************************************/
-package net.sf.taverna.t2.ui.perspectives.design;
-
-import static java.awt.BorderLayout.CENTER;
-import static java.awt.BorderLayout.NORTH;
-
-import java.awt.BorderLayout;
-import java.awt.Component;
-
-import javax.swing.JPanel;
-import javax.swing.JSplitPane;
-import javax.swing.JTabbedPane;
-
-import net.sf.taverna.t2.ui.menu.MenuManager;
-import net.sf.taverna.t2.workbench.edits.EditManager;
-import net.sf.taverna.t2.workbench.file.FileManager;
-import net.sf.taverna.t2.workbench.selection.SelectionManager;
-import net.sf.taverna.t2.workbench.ui.zaria.UIComponentFactorySPI;
-
-/**
- * @author David Withers
- */
-public class DesignPerspectiveComponent extends JSplitPane {
-	private static final long serialVersionUID = 6199239532713982318L;
-
-	private final UIComponentFactorySPI graphViewComponentFactory;
-	private final UIComponentFactorySPI servicePanelComponentFactory;
-	private final UIComponentFactorySPI contextualViewComponentFactory;
-	private final UIComponentFactorySPI workflowExplorerFactory;
-	@SuppressWarnings("unused")
-	private final UIComponentFactorySPI reportViewComponentFactory;
-	private final SelectionManager selectionManager;
-
-	private final FileManager fileManager;
-	private final MenuManager menuManager;
-	private final EditManager editManager;
-
-	public DesignPerspectiveComponent(
-			UIComponentFactorySPI graphViewComponentFactory,
-			UIComponentFactorySPI servicePanelComponentFactory,
-			UIComponentFactorySPI contextualViewComponentFactory,
-			UIComponentFactorySPI workflowExplorerFactory,
-			UIComponentFactorySPI reportViewComponentFactory,
-			FileManager fileManager, SelectionManager selectionManager,
-			MenuManager menuManager, EditManager editManager) {
-		this.graphViewComponentFactory = graphViewComponentFactory;
-		this.servicePanelComponentFactory = servicePanelComponentFactory;
-		this.contextualViewComponentFactory = contextualViewComponentFactory;
-		this.workflowExplorerFactory = workflowExplorerFactory;
-		this.reportViewComponentFactory = reportViewComponentFactory;
-		this.fileManager = fileManager;
-		this.selectionManager = selectionManager;
-		this.menuManager = menuManager;
-		this.editManager = editManager;
-
-		setBorder(null);
-		setOrientation(HORIZONTAL_SPLIT);
-		setDividerLocation(300);
-		setLeftComponent(createLeftComponent());
-		setRightComponent(createRightComponent());
-	}
-
-	private Component createLeftComponent() {
-		JSplitPane leftComponent = new JSplitPane(VERTICAL_SPLIT);
-		leftComponent.setBorder(null);
-		leftComponent.setDividerLocation(400);
-
-		leftComponent.setLeftComponent((Component) servicePanelComponentFactory
-				.getComponent());
-
-		JTabbedPane rightComponent = new JTabbedPane();
-		rightComponent.addTab("Workflow explorer",
-				(Component) workflowExplorerFactory.getComponent());
-		rightComponent.addTab("Details",
-				(Component) contextualViewComponentFactory.getComponent());
-		// rightComponent.addTab("Validation report", (Component)
-		// reportViewComponentFactory.getComponent());
-		leftComponent.setRightComponent(rightComponent);
-
-		return leftComponent;
-	}
-
-	private Component createRightComponent() {
-		JPanel diagramComponent = new JPanel(new BorderLayout());
-		diagramComponent.add(new WorkflowSelectorComponent(selectionManager),
-				NORTH);
-		diagramComponent.add(
-				(Component) graphViewComponentFactory.getComponent(), CENTER);
-
-		JPanel rightComonent = new JPanel(new BorderLayout());
-		rightComonent.add(new WorkflowBundleSelectorComponent(selectionManager,
-				fileManager, menuManager, editManager), NORTH);
-		rightComonent.add(diagramComponent, CENTER);
-		return rightComonent;
-	}
-}

http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/blob/dc466d6d/taverna-workbench-perspective-design/src/main/java/net/sf/taverna/t2/ui/perspectives/design/WorkflowBundleSelectorComponent.java
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diff --git a/taverna-workbench-perspective-design/src/main/java/net/sf/taverna/t2/ui/perspectives/design/WorkflowBundleSelectorComponent.java b/taverna-workbench-perspective-design/src/main/java/net/sf/taverna/t2/ui/perspectives/design/WorkflowBundleSelectorComponent.java
deleted file mode 100644
index 9fccf06..0000000
--- a/taverna-workbench-perspective-design/src/main/java/net/sf/taverna/t2/ui/perspectives/design/WorkflowBundleSelectorComponent.java
+++ /dev/null
@@ -1,113 +0,0 @@
-/*******************************************************************************
- * Copyright (C) 2013 The University of Manchester
- *
- *  Modifications to the initial code base are copyright of their
- *  respective authors, or their employers as appropriate.
- *
- *  This program is free software; you can redistribute it and/or
- *  modify it under the terms of the GNU Lesser General Public License
- *  as published by the Free Software Foundation; either version 2.1 of
- *  the License, or (at your option) any later version.
- *
- *  This program is distributed in the hope that it will be useful, but
- *  WITHOUT ANY WARRANTY; without even the implied warranty of
- *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
- *  Lesser General Public License for more details.
- *
- *  You should have received a copy of the GNU Lesser General Public
- *  License along with this program; if not, write to the Free Software
- *  Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307
- ******************************************************************************/
-package net.sf.taverna.t2.ui.perspectives.design;
-
-import java.awt.Component;
-import java.net.URI;
-
-import javax.swing.Action;
-import javax.swing.JMenuItem;
-
-import net.sf.taverna.t2.lang.observer.Observable;
-import net.sf.taverna.t2.lang.observer.SwingAwareObserver;
-import net.sf.taverna.t2.lang.ui.tabselector.Tab;
-import net.sf.taverna.t2.lang.ui.tabselector.TabSelectorComponent;
-import net.sf.taverna.t2.ui.menu.MenuManager;
-import net.sf.taverna.t2.workbench.edits.EditManager;
-import net.sf.taverna.t2.workbench.file.FileManager;
-import net.sf.taverna.t2.workbench.file.events.ClosedDataflowEvent;
-import net.sf.taverna.t2.workbench.file.events.FileManagerEvent;
-import net.sf.taverna.t2.workbench.selection.SelectionManager;
-import net.sf.taverna.t2.workbench.selection.events.SelectionManagerEvent;
-import net.sf.taverna.t2.workbench.selection.events.WorkflowBundleSelectionEvent;
-import uk.org.taverna.scufl2.api.container.WorkflowBundle;
-
-/**
- * Component for managing selection of workflow bundles.
- *
- * @author David Withers
- */
-public class WorkflowBundleSelectorComponent extends TabSelectorComponent<WorkflowBundle> {
-	private static final long serialVersionUID = 7291973052895544750L;
-	private static final URI FILE_CLOSE_URI = URI
-			.create("http://taverna.sf.net/2008/t2workbench/menu#fileClose");
-
-	private final SelectionManager selectionManager;
-	private final FileManager fileManager;
-	private final EditManager editManager;
-	private final MenuManager menuManager;
-
-	private Action closeMenuAction;
-
-	public WorkflowBundleSelectorComponent(SelectionManager selectionManager,
-			FileManager fileManager, MenuManager menuManager,
-			EditManager editManager) {
-		this.selectionManager = selectionManager;
-		this.fileManager = fileManager;
-		this.menuManager = menuManager;
-		this.editManager = editManager;
-		fileManager.addObserver(new FileManagerObserver());
-		selectionManager.addObserver(new SelectionManagerObserver());
-	}
-
-	private class FileManagerObserver extends
-			SwingAwareObserver<FileManagerEvent> {
-		@Override
-		public void notifySwing(Observable<FileManagerEvent> sender,
-				FileManagerEvent message) {
-			if (message instanceof ClosedDataflowEvent) {
-				ClosedDataflowEvent event = (ClosedDataflowEvent) message;
-				removeObject(event.getDataflow());
-			}
-		}
-	}
-
-	private class SelectionManagerObserver extends
-			SwingAwareObserver<SelectionManagerEvent> {
-		@Override
-		public void notifySwing(Observable<SelectionManagerEvent> sender,
-				SelectionManagerEvent message) {
-			if (message instanceof WorkflowBundleSelectionEvent) {
-				WorkflowBundleSelectionEvent workflowBundleSelectionEvent = (WorkflowBundleSelectionEvent) message;
-				WorkflowBundle workflowBundle = workflowBundleSelectionEvent
-						.getSelectedWorkflowBundle();
-				selectObject(workflowBundle);
-			}
-		}
-	}
-
-	@Override
-	protected Tab<WorkflowBundle> createTab(WorkflowBundle workflowBundle) {
-		return new WorkflowTab(this, workflowBundle, selectionManager,
-				fileManager, editManager, getCloseMenuAction());
-	}
-
-	private Action getCloseMenuAction() {
-		if (closeMenuAction == null) {
-			Component component = menuManager.getComponentByURI(FILE_CLOSE_URI);
-			if (component instanceof JMenuItem) {
-				JMenuItem menuItem = (JMenuItem) component;
-				closeMenuAction = menuItem.getAction();
-			}
-		}
-		return closeMenuAction;
-	}
-}

http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/blob/dc466d6d/taverna-workbench-perspective-design/src/main/java/net/sf/taverna/t2/ui/perspectives/design/WorkflowSelectorComponent.java
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diff --git a/taverna-workbench-perspective-design/src/main/java/net/sf/taverna/t2/ui/perspectives/design/WorkflowSelectorComponent.java b/taverna-workbench-perspective-design/src/main/java/net/sf/taverna/t2/ui/perspectives/design/WorkflowSelectorComponent.java
deleted file mode 100644
index 6472828..0000000
--- a/taverna-workbench-perspective-design/src/main/java/net/sf/taverna/t2/ui/perspectives/design/WorkflowSelectorComponent.java
+++ /dev/null
@@ -1,167 +0,0 @@
-/*******************************************************************************
- * Copyright (C) 2012 The University of Manchester
- *
- *  Modifications to the initial code base are copyright of their
- *  respective authors, or their employers as appropriate.
- *
- *  This program is free software; you can redistribute it and/or
- *  modify it under the terms of the GNU Lesser General Public License
- *  as published by the Free Software Foundation; either version 2.1 of
- *  the License, or (at your option) any later version.
- *
- *  This program is distributed in the hope that it will be useful, but
- *  WITHOUT ANY WARRANTY; without even the implied warranty of
- *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
- *  Lesser General Public License for more details.
- *
- *  You should have received a copy of the GNU Lesser General Public
- *  License along with this program; if not, write to the Free Software
- *  Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307
- ******************************************************************************/
-package net.sf.taverna.t2.ui.perspectives.design;
-
-import static java.awt.FlowLayout.LEFT;
-
-import java.awt.FlowLayout;
-import java.awt.event.ActionEvent;
-import java.awt.event.ActionListener;
-import java.net.URI;
-import java.util.LinkedList;
-import java.util.List;
-
-import javax.swing.JButton;
-import javax.swing.JLabel;
-import javax.swing.JPanel;
-
-import net.sf.taverna.t2.lang.observer.Observable;
-import net.sf.taverna.t2.lang.observer.SwingAwareObserver;
-import net.sf.taverna.t2.workbench.selection.SelectionManager;
-import net.sf.taverna.t2.workbench.selection.events.SelectionManagerEvent;
-import net.sf.taverna.t2.workbench.selection.events.WorkflowBundleSelectionEvent;
-import net.sf.taverna.t2.workbench.selection.events.WorkflowSelectionEvent;
-import uk.org.taverna.scufl2.api.activity.Activity;
-import uk.org.taverna.scufl2.api.common.NamedSet;
-import uk.org.taverna.scufl2.api.common.Scufl2Tools;
-import uk.org.taverna.scufl2.api.configurations.Configuration;
-import uk.org.taverna.scufl2.api.container.WorkflowBundle;
-import uk.org.taverna.scufl2.api.core.Processor;
-import uk.org.taverna.scufl2.api.core.Workflow;
-import uk.org.taverna.scufl2.api.profiles.ProcessorBinding;
-import uk.org.taverna.scufl2.api.profiles.Profile;
-
-import com.fasterxml.jackson.databind.JsonNode;
-
-/**
- * Component for managing selection of workflows.
- *
- * @author David Withers
- */
-@SuppressWarnings("serial")
-public class WorkflowSelectorComponent extends JPanel {
-	private static final URI NESTED_WORKFLOW_TYPE = URI
-			.create("http://ns.taverna.org.uk/2010/activity/nested-workflow");
-
-	private final Scufl2Tools scufl2Tools = new Scufl2Tools();
-	private final SelectionManager selectionManager;
-
-	public WorkflowSelectorComponent(SelectionManager selectionManager) {
-		super(new FlowLayout(LEFT));
-		this.selectionManager = selectionManager;
-		update(selectionManager.getSelectedWorkflow());
-		selectionManager.addObserver(new SelectionManagerObserver());
-	}
-
-	private void update(Workflow workflow) {
-		removeAll();
-		if (workflow != null
-				&& workflow.getParent().getMainWorkflow() != workflow)
-			update(workflow, selectionManager.getSelectedProfile());
-		revalidate();
-		repaint();
-	}
-
-	/** @see #update(Workflow) */
-	private void update(Workflow workflow, Profile profile) {
-		boolean first = true;
-		for (final Workflow workflowItem : getPath(
-				new NamedSet<>(profile.getActivities()), workflow, profile)) {
-			JButton button = new JButton(workflowItem.getName());
-//				button.setBorder(null);
-			button.addActionListener(new ActionListener() {
-				@Override
-				public void actionPerformed(ActionEvent e) {
-					selectionManager.setSelectedWorkflow(workflowItem);
-				}
-			});
-			if (!first)
-				add(new JLabel(">"));
-			first = false;
-			add(button);
-		}
-	}
-
-	private List<Workflow> getPath(NamedSet<Activity> activities,
-			Workflow workflow, Profile profile) {
-		LinkedList<Workflow> path = new LinkedList<>();
-		for (Activity activity : activities) {
-			if (!activity.getType().equals(NESTED_WORKFLOW_TYPE))
-				continue;
-			if (getNestedWorkflow(workflow, profile, activity) != workflow)
-				continue;
-
-			List<ProcessorBinding> processorBindings = scufl2Tools
-					.processorBindingsToActivity(activity);
-			for (ProcessorBinding processorBinding : processorBindings) {
-				Processor processor = processorBinding.getBoundProcessor();
-				Workflow parentWorkflow = processor.getParent();
-				if (workflow.getParent().getMainWorkflow() == parentWorkflow)
-					path.add(parentWorkflow);
-				else {
-					activities.remove(activity);
-					path.addAll(getPath(activities, parentWorkflow, profile));
-				}
-				break;
-			}
-			break;
-		}
-		path.add(workflow);
-		return path;
-	}
-
-	private Workflow getNestedWorkflow(Workflow workflow, Profile profile,
-			Activity activity) {
-		for (Configuration configuration : scufl2Tools.configurationsFor(
-				activity, profile)) {
-			JsonNode nested = configuration.getJson().get("nestedWorkflow");
-			Workflow wf = workflow.getParent().getWorkflows()
-					.getByName(nested.asText());
-			if (wf != null)
-				return wf;
-		}
-		return null;
-	}
-
-	private class SelectionManagerObserver extends
-			SwingAwareObserver<SelectionManagerEvent> {
-		@Override
-		public void notifySwing(Observable<SelectionManagerEvent> sender,
-				SelectionManagerEvent message) {
-			if (message instanceof WorkflowBundleSelectionEvent)
-				bundleSelected((WorkflowBundleSelectionEvent) message);
-			else if (message instanceof WorkflowSelectionEvent)
-				workflowSelected((WorkflowSelectionEvent) message);
-		}
-	}
-
-	private void workflowSelected(WorkflowSelectionEvent event) {
-		update(event.getSelectedWorkflow());
-	}
-
-	private void bundleSelected(WorkflowBundleSelectionEvent event) {
-		WorkflowBundle workflowBundle = event.getSelectedWorkflowBundle();
-		if (workflowBundle == null)
-			update((Workflow) null);
-		else
-			update(selectionManager.getSelectedWorkflow());
-	}
-}

http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/blob/dc466d6d/taverna-workbench-perspective-design/src/main/java/net/sf/taverna/t2/ui/perspectives/design/WorkflowTab.java
----------------------------------------------------------------------
diff --git a/taverna-workbench-perspective-design/src/main/java/net/sf/taverna/t2/ui/perspectives/design/WorkflowTab.java b/taverna-workbench-perspective-design/src/main/java/net/sf/taverna/t2/ui/perspectives/design/WorkflowTab.java
deleted file mode 100644
index e2f7bd6..0000000
--- a/taverna-workbench-perspective-design/src/main/java/net/sf/taverna/t2/ui/perspectives/design/WorkflowTab.java
+++ /dev/null
@@ -1,133 +0,0 @@
-/*******************************************************************************
- * Copyright (C) 2012 The University of Manchester
- *
- *  Modifications to the initial code base are copyright of their
- *  respective authors, or their employers as appropriate.
- *
- *  This program is free software; you can redistribute it and/or
- *  modify it under the terms of the GNU Lesser General Public License
- *  as published by the Free Software Foundation; either version 2.1 of
- *  the License, or (at your option) any later version.
- *
- *  This program is distributed in the hope that it will be useful, but
- *  WITHOUT ANY WARRANTY; without even the implied warranty of
- *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
- *  Lesser General Public License for more details.
- *
- *  You should have received a copy of the GNU Lesser General Public
- *  License along with this program; if not, write to the Free Software
- *  Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307
- ******************************************************************************/
-package net.sf.taverna.t2.ui.perspectives.design;
-
-import java.awt.Component;
-import java.awt.event.ActionEvent;
-
-import javax.swing.Action;
-
-import net.sf.taverna.t2.lang.observer.Observable;
-import net.sf.taverna.t2.lang.observer.SwingAwareObserver;
-import net.sf.taverna.t2.lang.ui.tabselector.Tab;
-import net.sf.taverna.t2.workbench.edits.EditManager;
-import net.sf.taverna.t2.workbench.edits.EditManager.AbstractDataflowEditEvent;
-import net.sf.taverna.t2.workbench.edits.EditManager.EditManagerEvent;
-import net.sf.taverna.t2.workbench.file.FileManager;
-import net.sf.taverna.t2.workbench.file.events.ClosedDataflowEvent;
-import net.sf.taverna.t2.workbench.file.events.FileManagerEvent;
-import net.sf.taverna.t2.workbench.file.events.SavedDataflowEvent;
-import net.sf.taverna.t2.workbench.file.exceptions.UnsavedException;
-import net.sf.taverna.t2.workbench.selection.SelectionManager;
-import uk.org.taverna.scufl2.api.container.WorkflowBundle;
-
-/**
- * Tab for selecting current workflow.
- *
- * @author David Withers
- */
-@SuppressWarnings("serial")
-public class WorkflowTab extends Tab<WorkflowBundle> {
-	private static final String SAVED_MARKER = "*";
-
-	private final Component component;
-	private final SelectionManager selectionManager;
-	private final FileManager fileManager;
-	private final EditManager editManager;
-	private final Action closeMenuAction;
-
-	private boolean saved = true;
-	private EditManagerObserver editManagerObserver;
-	private FileManagerObserver fileManagerObserver;
-
-	public WorkflowTab(Component component, final WorkflowBundle workflowBundle,
-			final SelectionManager selectionManager, final FileManager fileManager,
-			EditManager editManager, Action closeMenuAction) {
-		super(workflowBundle.getMainWorkflow().getName(), workflowBundle);
-		this.component = component;
-		this.selectionManager = selectionManager;
-		this.fileManager = fileManager;
-		this.editManager = editManager;
-		this.closeMenuAction = closeMenuAction;
-		editManagerObserver = new EditManagerObserver();
-		fileManagerObserver = new FileManagerObserver();
-		editManager.addObserver(editManagerObserver);
-		fileManager.addObserver(fileManagerObserver);
-	}
-
-	@Override
-	protected void clickTabAction() {
-		selectionManager.setSelectedWorkflowBundle(selection);
-	}
-
-	@Override
-	protected void closeTabAction() {
-		if (!saved && closeMenuAction != null) {
-			selectionManager.setSelectedWorkflowBundle(selection);
-			closeMenuAction.actionPerformed(new ActionEvent(component, 0, ""));
-		} else
-			try {
-				fileManager.closeDataflow(selection, false);
-			} catch (UnsavedException e) {
-			}
-	}
-
-	private class EditManagerObserver extends
-			SwingAwareObserver<EditManagerEvent> {
-		@Override
-		public void notifySwing(Observable<EditManagerEvent> sender,
-				EditManagerEvent message) {
-			if (message instanceof AbstractDataflowEditEvent) {
-				AbstractDataflowEditEvent event = (AbstractDataflowEditEvent) message;
-				if (event.getDataFlow() == selection)
-					setSaved(false);
-			}
-		}
-	}
-
-	private class FileManagerObserver extends
-			SwingAwareObserver<FileManagerEvent> {
-		@Override
-		public void notifySwing(Observable<FileManagerEvent> sender,
-				FileManagerEvent message) {
-			if (message instanceof ClosedDataflowEvent) {
-				ClosedDataflowEvent event = (ClosedDataflowEvent) message;
-				if (event.getDataflow() == selection) {
-					fileManager.removeObserver(fileManagerObserver);
-					editManager.removeObserver(editManagerObserver);
-				}
-			} else if (message instanceof SavedDataflowEvent) {
-				SavedDataflowEvent event = (SavedDataflowEvent) message;
-				if (event.getDataflow() == selection)
-					setSaved(true);
-			}
-		}
-	}
-
-	public void setSaved(boolean saved) {
-		this.saved = saved;
-		String name = getName();
-		if (saved && name.startsWith(SAVED_MARKER))
-			setName(name.substring(SAVED_MARKER.length()));
-		else if (!saved && !name.startsWith(SAVED_MARKER))
-			setName(SAVED_MARKER + name);
-	}
-}

http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/blob/dc466d6d/taverna-workbench-perspective-design/src/main/resources/META-INF/services/net.sf.taverna.t2.workbench.ui.zaria.PerspectiveSPI
----------------------------------------------------------------------
diff --git a/taverna-workbench-perspective-design/src/main/resources/META-INF/services/net.sf.taverna.t2.workbench.ui.zaria.PerspectiveSPI b/taverna-workbench-perspective-design/src/main/resources/META-INF/services/net.sf.taverna.t2.workbench.ui.zaria.PerspectiveSPI
deleted file mode 100644
index db4397c..0000000
--- a/taverna-workbench-perspective-design/src/main/resources/META-INF/services/net.sf.taverna.t2.workbench.ui.zaria.PerspectiveSPI
+++ /dev/null
@@ -1 +0,0 @@
-net.sf.taverna.t2.ui.perspectives.design.DesignPerspective

http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/blob/dc466d6d/taverna-workbench-perspective-design/src/main/resources/META-INF/spring/perspective-design-context-osgi.xml
----------------------------------------------------------------------
diff --git a/taverna-workbench-perspective-design/src/main/resources/META-INF/spring/perspective-design-context-osgi.xml b/taverna-workbench-perspective-design/src/main/resources/META-INF/spring/perspective-design-context-osgi.xml
deleted file mode 100644
index 3473a47..0000000
--- a/taverna-workbench-perspective-design/src/main/resources/META-INF/spring/perspective-design-context-osgi.xml
+++ /dev/null
@@ -1,21 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<beans:beans xmlns="http://www.springframework.org/schema/osgi" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
-	xmlns:beans="http://www.springframework.org/schema/beans"
-	xsi:schemaLocation="http://www.springframework.org/schema/beans
-                      http://www.springframework.org/schema/beans/spring-beans.xsd
-                      http://www.springframework.org/schema/osgi
-                      http://www.springframework.org/schema/osgi/spring-osgi.xsd">
-
-	<service ref="DesignPerspective" auto-export="interfaces" />
-
-	<reference id="graphViewComponentFactory" interface="net.sf.taverna.t2.workbench.ui.zaria.UIComponentFactorySPI" bean-name="GraphViewComponentFactory" />
-	<reference id="servicePanelComponentFactory" interface="net.sf.taverna.t2.workbench.ui.zaria.UIComponentFactorySPI" bean-name="ServicePanelComponentFactory"/>
-	<reference id="contextualViewComponentFactory" interface="net.sf.taverna.t2.workbench.ui.zaria.UIComponentFactorySPI" bean-name="ContextualViewComponentFactory"/>
-	<reference id="workflowExplorerFactory" interface="net.sf.taverna.t2.workbench.ui.zaria.UIComponentFactorySPI" bean-name="WorkflowExplorerFactory"/>
-	<!-- <reference id="reportViewComponentFactory" interface="net.sf.taverna.t2.workbench.ui.zaria.UIComponentFactorySPI" bean-name="ReportViewComponentFactory"/> -->
-	<reference id="fileManager" interface="net.sf.taverna.t2.workbench.file.FileManager" />
-	<reference id="selectionManager" interface="net.sf.taverna.t2.workbench.selection.SelectionManager" />
-	<reference id="menuManager" interface="net.sf.taverna.t2.ui.menu.MenuManager" />
-	<reference id="editManager" interface="net.sf.taverna.t2.workbench.edits.EditManager" />
-
-</beans:beans>

http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/blob/dc466d6d/taverna-workbench-perspective-design/src/main/resources/META-INF/spring/perspective-design-context.xml
----------------------------------------------------------------------
diff --git a/taverna-workbench-perspective-design/src/main/resources/META-INF/spring/perspective-design-context.xml b/taverna-workbench-perspective-design/src/main/resources/META-INF/spring/perspective-design-context.xml
deleted file mode 100644
index 9e4e383..0000000
--- a/taverna-workbench-perspective-design/src/main/resources/META-INF/spring/perspective-design-context.xml
+++ /dev/null
@@ -1,18 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<beans xmlns="http://www.springframework.org/schema/beans" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
-	xsi:schemaLocation="http://www.springframework.org/schema/beans
-                      http://www.springframework.org/schema/beans/spring-beans.xsd">
-
-	<bean id="DesignPerspective" class="net.sf.taverna.t2.ui.perspectives.design.DesignPerspective">
-			<property name="graphViewComponentFactory" ref="graphViewComponentFactory" />
-			<property name="servicePanelComponentFactory" ref="servicePanelComponentFactory" />
-			<property name="contextualViewComponentFactory" ref="contextualViewComponentFactory" />
-			<property name="workflowExplorerFactory" ref="workflowExplorerFactory" />
-			<!-- <property name="reportViewComponentFactory" ref="reportViewComponentFactory" /> -->
-			<property name="fileManager" ref="fileManager" />
-			<property name="selectionManager" ref="selectionManager" />
-			<property name="menuManager" ref="menuManager" />
-			<property name="editManager" ref="editManager" />
-	</bean>
-
-</beans>

http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/blob/dc466d6d/taverna-workbench-perspective-myexperiment/pom.xml
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diff --git a/taverna-workbench-perspective-myexperiment/pom.xml b/taverna-workbench-perspective-myexperiment/pom.xml
deleted file mode 100644
index 9406580..0000000
--- a/taverna-workbench-perspective-myexperiment/pom.xml
+++ /dev/null
@@ -1,85 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
-	xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
-	<modelVersion>4.0.0</modelVersion>
-	<parent>
-		<groupId>net.sf.taverna.t2</groupId>
-		<artifactId>ui-exts</artifactId>
-		<version>2.0-SNAPSHOT</version>
-	</parent>
-	<groupId>net.sf.taverna.t2.ui-exts</groupId>
-	<artifactId>perspective-myexperiment</artifactId>
-	<name>myExperiment perspective</name>
-	<repositories>
-		<repository>
-			<releases />
-			<snapshots>
-				<enabled>false</enabled>
-			</snapshots>
-			<id>mygrid-repository</id>
-			<name>myGrid Repository</name>
-			<url>http://www.mygrid.org.uk/maven/repository</url>
-		</repository>
-		<repository>
-			<releases>
-				<enabled>false</enabled>
-			</releases>
-			<snapshots />
-			<id>mygrid-snapshot-repository</id>
-			<name>myGrid Snapshot Repository</name>
-			<url>
-				http://www.mygrid.org.uk/maven/snapshot-repository
-			</url>
-		</repository>
-
-	</repositories>
-
-	<dependencies>
-		<dependency>
-			<groupId>net.sf.taverna.t2.ui-api</groupId>
-			<artifactId>menu-api</artifactId>
-			<version>${t2.ui.api.version}</version>
-		</dependency>
-		<dependency>
-			<groupId>net.sf.taverna.t2.ui-api</groupId>
-			<artifactId>workbench-api</artifactId>
-			<version>${t2.ui.api.version}</version>
-		</dependency>
-		<dependency>
-			<groupId>net.sf.taverna.t2.ui-api</groupId>
-			<artifactId>file-api</artifactId>
-			<version>${t2.ui.api.version}</version>
-		</dependency>
-		<dependency>
-			<groupId>net.sf.taverna.t2.ui-activities</groupId>
-			<artifactId>dataflow-activity-ui</artifactId>
-			<version>${t2.ui.activities.version}</version>
-		</dependency>
-		<dependency>
-			<groupId>net.sf.taverna.t2.lang</groupId>
-			<artifactId>ui</artifactId>
-			<version>${t2.lang.version}</version>
-		</dependency>
-
-		<dependency>
-			<groupId>uk.org.taverna.configuration</groupId>
-			<artifactId>taverna-configuration-api</artifactId>
-			<version>${taverna.configuration.version}</version>
-		</dependency>
-		<dependency>
-			<groupId>uk.org.taverna.configuration</groupId>
-			<artifactId>taverna-app-configuration-api</artifactId>
-			<version>${taverna.configuration.version}</version>
-		</dependency>
-
-		<dependency>
-			<groupId>org.jdom</groupId>
-			<artifactId>com.springsource.org.jdom</artifactId>
-			<version>${jdom.version}</version>
-		</dependency>
-		<dependency>
-			<groupId>org.apache.log4j</groupId>
-			<artifactId>com.springsource.org.apache.log4j</artifactId>
-		</dependency>
-	</dependencies>
-</project>

http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/blob/dc466d6d/taverna-workbench-perspective-myexperiment/src/main/java/net/sf/taverna/t2/ui/perspectives/myexperiment/AddCommentDialog.java
----------------------------------------------------------------------
diff --git a/taverna-workbench-perspective-myexperiment/src/main/java/net/sf/taverna/t2/ui/perspectives/myexperiment/AddCommentDialog.java b/taverna-workbench-perspective-myexperiment/src/main/java/net/sf/taverna/t2/ui/perspectives/myexperiment/AddCommentDialog.java
deleted file mode 100644
index fc1a8e6..0000000
--- a/taverna-workbench-perspective-myexperiment/src/main/java/net/sf/taverna/t2/ui/perspectives/myexperiment/AddCommentDialog.java
+++ /dev/null
@@ -1,330 +0,0 @@
-/*******************************************************************************
- * Copyright (C) 2009 The University of Manchester
- * 
- * Modifications to the initial code base are copyright of their respective
- * authors, or their employers as appropriate.
- * 
- * This program is free software; you can redistribute it and/or modify it under
- * the terms of the GNU Lesser General Public License as published by the Free
- * Software Foundation; either version 2.1 of the License, or (at your option)
- * any later version.
- * 
- * This program is distributed in the hope that it will be useful, but WITHOUT
- * ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
- * FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
- * details.
- * 
- * You should have received a copy of the GNU Lesser General Public License
- * along with this program; if not, write to the Free Software Foundation, Inc.,
- * 59 Temple Place, Suite 330, Boston, MA 02111-1307
- ******************************************************************************/
-package net.sf.taverna.t2.ui.perspectives.myexperiment;
-
-import java.awt.Component;
-import java.awt.Container;
-import java.awt.GridBagConstraints;
-import java.awt.GridBagLayout;
-import java.awt.Insets;
-import java.awt.event.ActionEvent;
-import java.awt.event.ActionListener;
-import java.awt.event.ComponentEvent;
-import java.awt.event.ComponentListener;
-import java.awt.event.KeyEvent;
-import java.awt.event.KeyListener;
-import java.net.HttpURLConnection;
-
-import javax.swing.ImageIcon;
-import javax.swing.JButton;
-import javax.swing.JDialog;
-import javax.swing.JFrame;
-import javax.swing.JLabel;
-import javax.swing.JRootPane;
-import javax.swing.JScrollPane;
-import javax.swing.SwingConstants;
-import javax.swing.SwingUtilities;
-import javax.swing.WindowConstants;
-import javax.swing.event.CaretEvent;
-import javax.swing.event.CaretListener;
-
-import net.sf.taverna.t2.lang.ui.DialogTextArea;
-import net.sf.taverna.t2.ui.perspectives.myexperiment.model.MyExperimentClient;
-import net.sf.taverna.t2.ui.perspectives.myexperiment.model.Resource;
-import net.sf.taverna.t2.ui.perspectives.myexperiment.model.ServerResponse;
-import net.sf.taverna.t2.ui.perspectives.myexperiment.model.Util;
-import net.sf.taverna.t2.workbench.helper.HelpEnabledDialog;
-
-import org.apache.log4j.Logger;
-
-/**
- * @author Sergejs Aleksejevs, Jiten Bhagat
- */
-
-public class AddCommentDialog extends HelpEnabledDialog implements ActionListener, CaretListener, ComponentListener, KeyListener {
-  // components for accessing application's main elements
-  private MainComponent pluginMainComponent;
-  private MyExperimentClient myExperimentClient;
-  private Logger logger;
-
-  // COMPONENTS
-  private DialogTextArea taComment;
-  private JButton bPost;
-  private JButton bCancel;
-  private JLabel lStatusMessage;
-
-  // STORAGE
-  private Resource resource; // a resource for which the comment is being posted
-  private String strComment = null;
-  private boolean bPostingSuccessful = false;
-
-  public AddCommentDialog(JFrame owner, Resource resource, MainComponent component, MyExperimentClient client, Logger logger) {
-	super(owner, "Add comment for \"" + resource.getTitle() + "\" "
-			+ resource.getItemTypeName(), true);
-
-	// set main variables to ensure access to myExperiment, logger and the parent component
-	this.pluginMainComponent = component;
-	this.myExperimentClient = client;
-	this.logger = logger;
-
-	// set the resource for which the comment is being added
-	this.resource = resource;
-
-	// set options of the 'add comment' dialog box
-	this.setDefaultCloseOperation(WindowConstants.DISPOSE_ON_CLOSE);
-	//this.setIconImage(new ImageIcon(MyExperimentPerspective.getLocalResourceURL("myexp_icon")).getImage());
-
-	this.initialiseUI();
-  }
-
-  private void initialiseUI() {
-	// get content pane
-	Container contentPane = this.getContentPane();
-
-	// set up layout
-	contentPane.setLayout(new GridBagLayout());
-	GridBagConstraints c = new GridBagConstraints();
-
-	// add all components
-	JLabel lInfo = new JLabel("Please type in you comment:");
-	c.gridx = 0;
-	c.gridy = 0;
-	c.anchor = GridBagConstraints.WEST;
-	c.gridwidth = 2;
-	c.fill = GridBagConstraints.NONE;
-	c.insets = new Insets(10, 10, 5, 10);
-	contentPane.add(lInfo, c);
-
-	this.taComment = new DialogTextArea(5, 35);
-	this.taComment.setLineWrap(true);
-	this.taComment.setWrapStyleWord(true);
-	this.taComment.addKeyListener(this);
-	this.taComment.addCaretListener(this);
-
-	JScrollPane spComment = new JScrollPane(this.taComment);
-	c.gridy = 1;
-	c.fill = GridBagConstraints.HORIZONTAL;
-	c.insets = new Insets(0, 10, 0, 10);
-	contentPane.add(spComment, c);
-
-	this.bPost = new JButton("Post Comment");
-	this.bPost.setEnabled(false);
-	this.bPost.setDefaultCapable(true);
-	this.getRootPane().setDefaultButton(this.bPost);
-	this.bPost.addActionListener(this);
-	this.bPost.addKeyListener(this);
-	c.gridy = 2;
-	c.anchor = GridBagConstraints.EAST;
-	c.gridwidth = 1;
-	c.fill = GridBagConstraints.NONE;
-	c.weightx = 0.5;
-	c.insets = new Insets(10, 5, 10, 5);
-	contentPane.add(bPost, c);
-
-	this.bCancel = new JButton("Cancel");
-	this.bCancel.setPreferredSize(this.bPost.getPreferredSize());
-	this.bCancel.addActionListener(this);
-	c.gridx = 1;
-	c.anchor = GridBagConstraints.WEST;
-	c.weightx = 0.5;
-	contentPane.add(bCancel, c);
-
-	this.pack();
-	this.setMinimumSize(this.getPreferredSize());
-	this.setMaximumSize(this.getPreferredSize());
-	this.addComponentListener(this);
-  }
-
-  /**
-   * Opens up a modal dialog where the user can enter the comment text.
-   * 
-   * Window is simply closed if 'Cancel' button is pressed; on pressing 'Post
-   * Comment' button the window will turn into 'waiting' state, post the comment
-   * and return the resulting XML document (which would contain the newly added
-   * comment) back to the caller.
-   * 
-   * @return String value of the non-empty comment text to be sent to
-   *         myExperiment or null if action was cancelled.
-   */
-  public String launchAddCommentDialogAndPostCommentIfRequired() {
-	// makes the 'add comment' dialog visible, then waits until it is closed;
-	// control returns to this method when the dialog window is disposed
-	this.setVisible(true);
-	return (strComment);
-  }
-
-  // *** Callback for ActionListener interface ***
-  public void actionPerformed(ActionEvent e) {
-	if (e.getSource().equals(this.bPost)) {
-	  // 'Post' button is not active when text in the comment field is blank,
-	  // so if it was pressed, there should be some text typed in
-	  this.strComment = this.taComment.getText();
-
-	  // the window will stay visible, but should turn into 'waiting' state
-	  final JRootPane rootPane = this.getRootPane();
-	  final Container contentPane = this.getContentPane();
-	  contentPane.remove(this.bPost);
-	  contentPane.remove(this.bCancel);
-	  if (this.lStatusMessage != null)
-		contentPane.remove(this.lStatusMessage);
-	  this.taComment.setEditable(false);
-
-	  final GridBagConstraints c = new GridBagConstraints();
-	  c.gridx = 0;
-	  c.gridy = 2;
-	  c.gridwidth = 2;
-	  c.anchor = GridBagConstraints.CENTER;
-	  c.fill = GridBagConstraints.NONE;
-	  c.insets = new Insets(10, 5, 10, 5);
-	  lStatusMessage = new JLabel("Posting your comment...", new ImageIcon(MyExperimentPerspective.getLocalResourceURL("spinner")), SwingConstants.CENTER);
-	  contentPane.add(lStatusMessage, c);
-
-	  // disable the (X) button (ideally, would need to remove it, but there's no way to do this)
-	  this.setDefaultCloseOperation(JDialog.DO_NOTHING_ON_CLOSE);
-
-	  // revalidate the window
-	  this.pack();
-	  this.validate();
-	  this.repaint();
-
-	  new Thread("Posting comment") {
-		public void run() {
-		  // *** POST THE COMMENT ***
-		  final ServerResponse response = myExperimentClient.postComment(resource, Util.stripAllHTML(strComment));
-		  bPostingSuccessful = (response.getResponseCode() == HttpURLConnection.HTTP_OK);
-
-		  SwingUtilities.invokeLater(new Runnable() {
-			public void run() {
-			  // *** REACT TO POSTING RESULT ***
-			  if (bPostingSuccessful) {
-				// comment posted successfully
-				setDefaultCloseOperation(JDialog.DISPOSE_ON_CLOSE);
-				taComment.setEnabled(false);
-				contentPane.remove(lStatusMessage);
-
-				c.insets = new Insets(10, 5, 5, 5);
-				lStatusMessage = new JLabel("Your comment was posted successfully", new ImageIcon(MyExperimentPerspective.getLocalResourceURL("success_icon")), SwingConstants.LEFT);
-				contentPane.add(lStatusMessage, c);
-
-				bCancel.setText("OK");
-				bCancel.setDefaultCapable(true);
-				rootPane.setDefaultButton(bCancel);
-				c.insets = new Insets(5, 5, 10, 5);
-				c.gridy += 1;
-				contentPane.add(bCancel, c);
-
-				pack();
-				bCancel.requestFocusInWindow();
-			  } else {
-				// posting wasn't successful, notify the user
-				// and provide an option to close window or start again
-				setDefaultCloseOperation(JDialog.DISPOSE_ON_CLOSE);
-				taComment.setEditable(true);
-				contentPane.remove(lStatusMessage);
-
-				c.insets = new Insets(10, 5, 5, 5);
-				lStatusMessage = new JLabel("Error occurred while posting comment: "
-					+ Util.retrieveReasonFromErrorXMLDocument(response.getResponseBody()), new ImageIcon(MyExperimentPerspective.getLocalResourceURL("failure_icon")), SwingConstants.LEFT);
-				contentPane.add(lStatusMessage, c);
-
-				bPost.setText("Try again");
-				bPost.setToolTipText("Please review your comment before trying to post it again");
-				c.anchor = GridBagConstraints.EAST;
-				c.insets = new Insets(5, 5, 10, 5);
-				c.gridwidth = 1;
-				c.weightx = 0.5;
-				c.gridx = 0;
-				c.gridy += 1;
-				contentPane.add(bPost, c);
-				rootPane.setDefaultButton(bPost);
-
-				c.anchor = GridBagConstraints.WEST;
-				c.gridx = 1;
-				bCancel.setPreferredSize(bPost.getPreferredSize());
-				contentPane.add(bCancel, c);
-
-				pack();
-				validate();
-				repaint();
-			  }
-			}
-		  });
-
-		}
-	  }.start();
-	} else if (e.getSource().equals(this.bCancel)) {
-	  // cleanup the comment if it wasn't posted successfully + simply close and destroy the window
-	  if (!this.bPostingSuccessful)
-		this.strComment = null;
-	  this.dispose();
-	}
-
-  }
-
-  // *** Callbacks for KeyListener interface ***
-  public void keyPressed(KeyEvent e) {
-	// if TAB was pressed in the text area, need to move keyboard focus
-	if (e.getSource().equals(this.taComment)
-		&& e.getKeyCode() == KeyEvent.VK_TAB) {
-	  if ((e.getModifiersEx() & KeyEvent.SHIFT_DOWN_MASK) == KeyEvent.SHIFT_DOWN_MASK) {
-		// SHIFT + TAB move focus backwards
-		((Component) e.getSource()).transferFocusBackward();
-	  } else {
-		// TAB moves focus forward
-		((Component) e.getSource()).transferFocus();
-	  }
-	  e.consume();
-	}
-  }
-
-  public void keyReleased(KeyEvent e) {
-	// not in use
-  }
-
-  public void keyTyped(KeyEvent e) {
-	// not in use
-  }
-
-  // *** Callback for CaretListener interface ***
-  public void caretUpdate(CaretEvent e) {
-	// check whether the 'Post' button should be available or not
-	this.bPost.setEnabled(this.taComment.getText().length() > 0);
-  }
-
-  // *** Callbacks for ComponentListener interface ***
-  public void componentShown(ComponentEvent e) {
-	// center this dialog box within the preview browser window
-	Util.centerComponentWithinAnother(this.pluginMainComponent.getPreviewBrowser(), this);
-  }
-
-  public void componentHidden(ComponentEvent e) {
-	// not in use
-  }
-
-  public void componentMoved(ComponentEvent e) {
-	// not in use
-  }
-
-  public void componentResized(ComponentEvent e) {
-	// not in use
-  }
-
-}

http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/blob/dc466d6d/taverna-workbench-perspective-myexperiment/src/main/java/net/sf/taverna/t2/ui/perspectives/myexperiment/AddRemoveFavouriteDialog.java
----------------------------------------------------------------------
diff --git a/taverna-workbench-perspective-myexperiment/src/main/java/net/sf/taverna/t2/ui/perspectives/myexperiment/AddRemoveFavouriteDialog.java b/taverna-workbench-perspective-myexperiment/src/main/java/net/sf/taverna/t2/ui/perspectives/myexperiment/AddRemoveFavouriteDialog.java
deleted file mode 100644
index 563d2b8..0000000
--- a/taverna-workbench-perspective-myexperiment/src/main/java/net/sf/taverna/t2/ui/perspectives/myexperiment/AddRemoveFavouriteDialog.java
+++ /dev/null
@@ -1,277 +0,0 @@
-/*******************************************************************************
- * Copyright (C) 2009 The University of Manchester
- * 
- * Modifications to the initial code base are copyright of their respective
- * authors, or their employers as appropriate.
- * 
- * This program is free software; you can redistribute it and/or modify it under
- * the terms of the GNU Lesser General Public License as published by the Free
- * Software Foundation; either version 2.1 of the License, or (at your option)
- * any later version.
- * 
- * This program is distributed in the hope that it will be useful, but WITHOUT
- * ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
- * FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
- * details.
- * 
- * You should have received a copy of the GNU Lesser General Public License
- * along with this program; if not, write to the Free Software Foundation, Inc.,
- * 59 Temple Place, Suite 330, Boston, MA 02111-1307
- ******************************************************************************/
-package net.sf.taverna.t2.ui.perspectives.myexperiment;
-
-import java.awt.Container;
-import java.awt.GridBagConstraints;
-import java.awt.GridBagLayout;
-import java.awt.Insets;
-import java.awt.event.ActionEvent;
-import java.awt.event.ActionListener;
-import java.awt.event.ComponentEvent;
-import java.awt.event.ComponentListener;
-import java.net.HttpURLConnection;
-
-import javax.swing.ImageIcon;
-import javax.swing.JButton;
-import javax.swing.JDialog;
-import javax.swing.JFrame;
-import javax.swing.JLabel;
-import javax.swing.SwingConstants;
-import javax.swing.SwingUtilities;
-import javax.swing.WindowConstants;
-
-import net.sf.taverna.t2.ui.perspectives.myexperiment.model.MyExperimentClient;
-import net.sf.taverna.t2.ui.perspectives.myexperiment.model.Resource;
-import net.sf.taverna.t2.ui.perspectives.myexperiment.model.ServerResponse;
-import net.sf.taverna.t2.ui.perspectives.myexperiment.model.Util;
-import net.sf.taverna.t2.workbench.helper.HelpEnabledDialog;
-
-import org.apache.log4j.Logger;
-
-/**
- * @author Sergejs Aleksejevs
- */
-public class AddRemoveFavouriteDialog extends HelpEnabledDialog implements ActionListener, ComponentListener {
-  // CONSTANTS
-  protected static final int OPERATION_SUCCESSFUL = 1;
-  protected static final int OPERATION_CANCELLED = 0;
-  protected static final int OPERATION_FAILED = -1;
-
-  // components for accessing application's main elements
-  private final MainComponent pluginMainComponent;
-  private final MyExperimentClient myExperimentClient;
-  private final Logger logger;
-
-  // COMPONENTS
-  private JButton bAddRemoveFavourite;
-  private JButton bCancel;
-
-  // STORAGE
-  private final Resource resource; // a resource which is being favourited / removed from favourites
-  private final boolean bIsFavouriteBeingAdded;
-  private int iOperationStatus = OPERATION_CANCELLED;
-  private ServerResponse response = null;
-
-  public AddRemoveFavouriteDialog(JFrame owner, boolean isFavouriteAdded, Resource resource, MainComponent component, MyExperimentClient client, Logger logger) {
-	super(owner, isFavouriteAdded ? "Add to" : "Remove from"
-	+ " favourites - \"" + resource.getTitle() + "\" "
-	+ resource.getItemTypeName(), true);
-
-	// set main variables to ensure access to myExperiment, logger and the parent component
-	this.pluginMainComponent = component;
-	this.myExperimentClient = client;
-	this.logger = logger;
-
-	// parameters
-	this.bIsFavouriteBeingAdded = isFavouriteAdded;
-	this.resource = resource;
-
-	// set options of the 'add/remove favourite' dialog box
-	this.setDefaultCloseOperation(WindowConstants.DISPOSE_ON_CLOSE);
-	//this.setIconImage(new ImageIcon(MyExperimentPerspective.getLocalResourceURL("myexp_icon")).getImage());
-
-	this.initialiseUI();
-  }
-
-  private void initialiseUI() {
-	// get content pane
-	Container contentPane = this.getContentPane();
-
-	// set up layout
-	contentPane.setLayout(new GridBagLayout());
-	GridBagConstraints c = new GridBagConstraints();
-
-	// add all components
-	JLabel lInfo = new JLabel("<html><center>You are about to "
-		+ (this.bIsFavouriteBeingAdded ? "add" : "remove") + " \""
-		+ resource.getTitle() + "\" " + resource.getItemTypeName()
-		+ (this.bIsFavouriteBeingAdded ? " to" : " from")
-		+ " your favourites.<br><br>"
-		+ "Do you want to proceed?</center></html>");
-	c.gridx = 0;
-	c.gridy = 0;
-	c.anchor = GridBagConstraints.WEST;
-	c.gridwidth = 2;
-	c.fill = GridBagConstraints.NONE;
-	c.insets = new Insets(10, 10, 10, 10);
-	contentPane.add(lInfo, c);
-
-	if (this.bIsFavouriteBeingAdded) {
-	  this.bAddRemoveFavourite = new JButton("Add to Favourites");
-	} else {
-	  this.bAddRemoveFavourite = new JButton("Remove from Favourites");
-	}
-	this.bAddRemoveFavourite.setDefaultCapable(true);
-	this.bAddRemoveFavourite.addActionListener(this);
-
-	c.gridy = 1;
-	c.anchor = GridBagConstraints.EAST;
-	c.gridwidth = 1;
-	c.fill = GridBagConstraints.NONE;
-	c.weightx = 0.5;
-	c.insets = new Insets(5, 5, 10, 5);
-	contentPane.add(this.bAddRemoveFavourite, c);
-
-	this.bCancel = new JButton("Cancel");
-	this.bCancel.setPreferredSize(this.bAddRemoveFavourite.getPreferredSize());
-	this.bCancel.addActionListener(this);
-	c.gridx = 1;
-	c.anchor = GridBagConstraints.WEST;
-	contentPane.add(bCancel, c);
-
-	this.pack();
-	this.getRootPane().setDefaultButton(this.bAddRemoveFavourite);
-	this.setMinimumSize(this.getPreferredSize());
-	this.setMaximumSize(this.getPreferredSize());
-	this.addComponentListener(this);
-  }
-
-  /**
-   * Makes the dialog for adding / removing an item from favourites visible.
-   * Based on the user actions, it might execute the adding / removing
-   * operation.
-   * 
-   * @return Returns an integer value which represents status of the operation:
-   *         {@value #OPERATION_SUCCESSFUL} - favourite item was added / removed
-   *         successfully; {@value #OPERATION_CANCELLED} - the user has
-   *         cancelled operation; {@value #OPERATION_FAILED} - failed while
-   *         adding / removing favourite item;
-   */
-  public int launchAddRemoveFavouriteDialogAndPerformNecessaryActionIfRequired() {
-	this.setVisible(true);
-	return (this.iOperationStatus);
-  }
-
-  // *** Callback for ActionListener interface ***
-  public void actionPerformed(ActionEvent e) {
-
-	if (e.getSource().equals(this.bAddRemoveFavourite)) {
-	  // the window will stay visible, but should turn into 'waiting' state
-	  final Container contentPane = this.getContentPane();
-	  contentPane.removeAll();
-
-	  final GridBagConstraints c = new GridBagConstraints();
-	  c.gridx = 0;
-	  c.gridy = 0;
-	  c.gridwidth = 2;
-	  c.anchor = GridBagConstraints.CENTER;
-	  c.fill = GridBagConstraints.NONE;
-	  c.insets = new Insets(10, 5, 10, 5);
-	  JLabel lInfo = new JLabel(this.bIsFavouriteBeingAdded ? "Adding to favourites..." : "Removing from favourites...", new ImageIcon(MyExperimentPerspective.getLocalResourceURL("spinner")), SwingConstants.CENTER);
-	  contentPane.add(lInfo, c);
-
-	  // disable the (X) button (ideally, would need to remove it, but there's no way to do this)
-	  this.setDefaultCloseOperation(JDialog.DO_NOTHING_ON_CLOSE);
-
-	  // revalidate the window
-	  this.pack();
-	  this.validate();
-	  this.repaint();
-
-	  new Thread("Execute add / remove favourite operation") {
-		@Override
-		public void run() {
-		  // *** DO THE REQUIRED ACTION ***
-		  response = (bIsFavouriteBeingAdded ? myExperimentClient.addFavourite(resource) : myExperimentClient.deleteFavourite(resource));
-		  iOperationStatus = (response.getResponseCode() == HttpURLConnection.HTTP_OK) ? OPERATION_SUCCESSFUL : OPERATION_FAILED;
-
-		  if (iOperationStatus == OPERATION_SUCCESSFUL) {
-			// update local list of favourite items - no data sync with the API is required at this point
-			if (bIsFavouriteBeingAdded) {
-			  myExperimentClient.getCurrentUser().getFavourites().add(resource);
-			} else {
-			  myExperimentClient.getCurrentUser().getFavourites().remove(resource);
-			}
-		  } else {
-			// operation has failed - this might have been due to outdated data which is stored locally;
-			// sync favourite data with the API so that the UI can show more relevant data
-			// (e.g. replace 'add to favourites' with 'remove from favourites' if this item is already
-			//  added to favourites - probably via another interface: web or another instance of the plugin)
-			myExperimentClient.updateUserFavourites(myExperimentClient.getCurrentUser());
-		  }
-
-		  SwingUtilities.invokeLater(new Runnable() {
-			public void run() {
-			  // *** REACT TO RESULT ***
-			  setDefaultCloseOperation(JDialog.DISPOSE_ON_CLOSE);
-			  contentPane.removeAll();
-			  c.insets = new Insets(10, 5, 5, 5);
-
-			  if (iOperationStatus == OPERATION_SUCCESSFUL) {
-				// favourite was added / removed successfully
-				contentPane.add(new JLabel("Item has been successfully "
-					+ (bIsFavouriteBeingAdded ? "added to" : "removed from")
-					+ " your favourites", new ImageIcon(MyExperimentPerspective.getLocalResourceURL("success_icon")), SwingConstants.LEFT), c);
-			  } else {
-				// favourite wasn't added / removed - operation failed;
-				// display error message
-				contentPane.add(new JLabel("<html><center>Error occurred while "
-					+ (bIsFavouriteBeingAdded ? "adding" : "removing")
-					+ " the item "
-					+ (bIsFavouriteBeingAdded ? "to" : "from")
-					+ " your favourites:<br>"
-					+ Util.retrieveReasonFromErrorXMLDocument(response.getResponseBody())
-					+ "</center></html>", new ImageIcon(MyExperimentPerspective.getLocalResourceURL("failure_icon")), SwingConstants.LEFT), c);
-			  }
-
-			  bCancel.setText("OK");
-			  bCancel.setPreferredSize(null); // resets preferred size to the automatic one
-			  bCancel.setDefaultCapable(true);
-			  c.insets = new Insets(5, 5, 10, 5);
-			  c.gridy += 1;
-			  contentPane.add(bCancel, c);
-
-			  pack();
-			  repaint();
-
-			  bCancel.requestFocusInWindow();
-			  getRootPane().setDefaultButton(bCancel);
-			}
-		  });
-		}
-	  }.start();
-
-	} else if (e.getSource().equals(this.bCancel)) {
-	  // simply close and destroy the window
-	  this.dispose();
-	}
-  }
-
-  // *** Callbacks for ComponentListener interface ***
-  public void componentShown(ComponentEvent e) {
-	// center this dialog box within the preview browser window
-	Util.centerComponentWithinAnother(this.pluginMainComponent.getPreviewBrowser(), this);
-  }
-
-  public void componentHidden(ComponentEvent e) {
-	// not in use
-  }
-
-  public void componentMoved(ComponentEvent e) {
-	// not in use
-  }
-
-  public void componentResized(ComponentEvent e) {
-	// not in use
-  }
-
-}

http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/blob/dc466d6d/taverna-workbench-perspective-myexperiment/src/main/java/net/sf/taverna/t2/ui/perspectives/myexperiment/ExampleWorkflowsPanel.java
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diff --git a/taverna-workbench-perspective-myexperiment/src/main/java/net/sf/taverna/t2/ui/perspectives/myexperiment/ExampleWorkflowsPanel.java b/taverna-workbench-perspective-myexperiment/src/main/java/net/sf/taverna/t2/ui/perspectives/myexperiment/ExampleWorkflowsPanel.java
deleted file mode 100644
index d3a58a0..0000000
--- a/taverna-workbench-perspective-myexperiment/src/main/java/net/sf/taverna/t2/ui/perspectives/myexperiment/ExampleWorkflowsPanel.java
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@@ -1,153 +0,0 @@
-/*******************************************************************************
- * Copyright (C) 2009 The University of Manchester
- * 
- * Modifications to the initial code base are copyright of their respective
- * authors, or their employers as appropriate.
- * 
- * This program is free software; you can redistribute it and/or modify it under
- * the terms of the GNU Lesser General Public License as published by the Free
- * Software Foundation; either version 2.1 of the License, or (at your option)
- * any later version.
- * 
- * This program is distributed in the hope that it will be useful, but WITHOUT
- * ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
- * FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
- * details.
- * 
- * You should have received a copy of the GNU Lesser General Public License
- * along with this program; if not, write to the Free Software Foundation, Inc.,
- * 59 Temple Place, Suite 330, Boston, MA 02111-1307
- ******************************************************************************/
-package net.sf.taverna.t2.ui.perspectives.myexperiment;
-
-import java.awt.BorderLayout;
-import java.awt.event.ActionListener;
-import java.awt.event.ActionEvent;
-import java.util.ArrayList;
-import java.util.List;
-
-import javax.swing.BorderFactory;
-import javax.swing.JButton;
-import javax.swing.JLabel;
-import javax.swing.JPanel;
-import javax.swing.JScrollPane;
-import javax.swing.SwingUtilities;
-import javax.swing.event.ChangeListener;
-import javax.swing.event.ChangeEvent;
-
-import org.apache.log4j.Logger;
-
-import net.sf.taverna.t2.workbench.icons.WorkbenchIcons;
-import net.sf.taverna.t2.ui.perspectives.myexperiment.ResourceListPanel;
-import net.sf.taverna.t2.ui.perspectives.myexperiment.model.MyExperimentClient;
-import net.sf.taverna.t2.ui.perspectives.myexperiment.model.Resource;
-import net.sf.taverna.t2.ui.perspectives.myexperiment.model.Workflow;
-
-/**
- * @author Sergejs Aleksejevs, Jiten Bhagat
- */
-public class ExampleWorkflowsPanel extends JPanel implements ActionListener, ChangeListener {
-
-  private static final String ACTION_REFRESH = "refresh_example_workflows";
-
-  private MainComponent pluginMainComponent;
-  private MyExperimentClient myExperimentClient;
-  private Logger logger;
-
-  private JLabel statusLabel;
-  private JButton refreshButton;
-
-  private List<Workflow> workflows = new ArrayList<Workflow>();
-
-  private ResourceListPanel workflowsListPanel;
-
-  public ExampleWorkflowsPanel(MainComponent component, MyExperimentClient client, Logger logger) {
-	super();
-
-	// set main variables to ensure access to myExperiment, logger and the
-	// parent component
-	this.pluginMainComponent = component;
-	this.myExperimentClient = client;
-	this.logger = logger;
-
-	this.initialiseUI();
-  }
-
-  public void actionPerformed(ActionEvent event) {
-	if (ACTION_REFRESH.equals(event.getActionCommand())) {
-	  this.refresh();
-	}
-  }
-
-  public void stateChanged(ChangeEvent event) {
-
-  }
-
-  public void clear() {
-	this.statusLabel.setText("");
-	this.workflowsListPanel.clear();
-  }
-
-  public void refresh() {
-	this.pluginMainComponent.getStatusBar().setStatus(this.getClass().getName(), "Fetching example workflows from myExperiment");
-	this.statusLabel.setText("");
-
-	// Make call to myExperiment API in a different thread
-	// (then use SwingUtilities.invokeLater to update the UI when ready).
-	new Thread("Refresh for ExampleWorkflowsPanel") {
-	  public void run() {
-		logger.debug("Refreshing Example Workflows tab");
-
-		try {
-		  workflows = myExperimentClient.getExampleWorkflows();
-
-		  SwingUtilities.invokeLater(new Runnable() {
-			public void run() {
-			  repopulate();
-			}
-		  });
-		} catch (Exception ex) {
-		  logger.error("Failed to refresh Example Workflows panel", ex);
-		}
-	  }
-	}.start();
-
-  }
-
-  public void repopulate() {
-	logger.debug("Repopulating Example Workflows tab");
-
-	this.pluginMainComponent.getStatusBar().setStatus(this.getClass().getName(), null);
-	this.statusLabel.setText("This will contain example resources to"
-		+ " help get you started in Taverna.  Coming Soon.");
-	this.statusLabel.setText(this.workflows.size() + " example workflows found");
-
-	// cannot cast a list of subclass items into a list of superclass items -
-	// hence a new list is created
-	this.workflowsListPanel.setListItems(new ArrayList<Resource>(this.workflows));
-
-	this.revalidate();
-  }
-
-  private void initialiseUI() {
-	this.setLayout(new BorderLayout());
-
-	JPanel topPanel = new JPanel(new BorderLayout());
-	topPanel.setBorder(BorderFactory.createEtchedBorder());
-	this.statusLabel = new JLabel();
-	this.statusLabel.setBorder(BorderFactory.createEmptyBorder(0, 7, 0, 0));
-	topPanel.add(this.statusLabel, BorderLayout.CENTER);
-	this.refreshButton = new JButton("Refresh", WorkbenchIcons.refreshIcon);
-	this.refreshButton.setActionCommand(ACTION_REFRESH);
-	this.refreshButton.addActionListener(this);
-	this.refreshButton.setToolTipText("Click this button to refresh the Example Workflows list");
-	topPanel.add(this.refreshButton, BorderLayout.EAST);
-	this.add(topPanel, BorderLayout.NORTH);
-
-	this.workflowsListPanel = new ResourceListPanel(this.pluginMainComponent, this.myExperimentClient, this.logger);
-	JScrollPane spExampleWorkflowList = new JScrollPane(this.workflowsListPanel);
-	spExampleWorkflowList.getVerticalScrollBar().setUnitIncrement(ResourcePreviewBrowser.PREFERRED_SCROLL);
-
-	this.add(spExampleWorkflowList, BorderLayout.CENTER);
-  }
-}