[jira] [Closed] (ARROW-14555) [R] install.packages("arrow") fails on docker image rocker/r-ver:4.0.2

["Jonathan Keane (Jira)" <ji...@apache.org>]

     [ https://issues.apache.org/jira/browse/ARROW-14555?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]

Jonathan Keane closed ARROW-14555.
----------------------------------
    Resolution: Fixed

It sounds like this is resolved, if not feel free to comment or reopen it.

> [R] install.packages("arrow") fails on docker image rocker/r-ver:4.0.2
> ----------------------------------------------------------------------
>
>                 Key: ARROW-14555
>                 URL: https://issues.apache.org/jira/browse/ARROW-14555
>             Project: Apache Arrow
>          Issue Type: Bug
>          Components: R
>    Affects Versions: 6.0.0
>            Reporter: Daniel Teske
>            Priority: Major
>         Attachments: complete-arrow_r_dev-output.log, complete-output.log
>
>
> Since last week we cannot build our R environment because the the arrow lib fails on
> {code:java}
> install.packages("arrow"){code}
> We're using rocker/r-vers:4.0.2 as our base image. It seems that it's possible to install arrow on Windows an Mac, but not on Linux.
> The effected part of the Dockerfile is the following:
> {code:java}
> FROM rocker/r-ver:4.0.2 AS builder
> RUN apt-get update && apt-get install -y \
>     git-core \
>     libcurl4-openssl-dev \
>     libgit2-dev \
>     libglpk-dev \
>     libgmp-dev \
>     libicu-dev \
>     libssh2-1-dev \
>     libssl-dev \
>     libxml2-dev \
>     make pandoc pandoc-citeproc zlib1g-dev && rm -rf /var/lib/apt/lists/*
> RUN echo "options(repos = c(CRAN = 'https://cran.rstudio.com/'), download.file.method = 'libcurl')" >> /usr/local/lib/R/etc/Rprofile.site
> RUN R -e 'install.packages("remotes")'
> RUN R -e 'remotes::install_github("r-lib/remotes", ref = "97bbf81")'
> # copy the setup script, run it, then delete it
> COPY dependencies/setup.R /
> RUN Rscript setup.R && rm setup.R
> {code}
> the dependencies/setup.R script contains 
> {code:java}
> install.packages(
>   c(
>     "arrow"
>   ),
>   quiet = FALSE,
>   verbose = TRUE
> )
> arrow::install_arrow()
> {code}
> I attached the complete log output, but the interesting part ist the following:
> {code:java}
> #12 55.88 * installing *source* package ‘arrow’ ...
> #12 55.96 ** package ‘arrow’ successfully unpacked and MD5 sums checked
> #12 55.96 ** using staged installation
> #12 56.46 *** Found local C++ source: 'tools/cpp'
> #12 56.46 *** Building C++ libraries
> #12 56.53 **** cmake
> #12 62.22 **** arrow  
> #12 663.6 **** Error building Arrow C++. Re-run with ARROW_R_DEV=true for debug information. 
> #12 665.3 ------------------------- NOTE ---------------------------
> #12 665.3 There was an issue preparing the Arrow C++ libraries.
> #12 665.3 See https://arrow.apache.org/docs/r/articles/install.html
> #12 665.3 ---------------------------------------------------------
> #12 665.5 ERROR: configuration failed for package ‘arrow’
> #12 665.5 * removing ‘/usr/local/lib/R/site-library/arrow’
> #12 666.0 
> #12 666.0 The downloaded source packages are in
> #12 666.0       ‘/tmp/RtmpDWxSqL/downloaded_packages’
> #12 666.0 Warning message:
> #12 666.0 In install.packages(c("arrow"), quiet = FALSE, verbose = TRUE) :
> #12 666.0   installation of package ‘arrow’ had non-zero exit status
> #12 666.1 Error in loadNamespace(name) : there is no package called ‘arrow’
> #12 666.1 Calls: :: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
> #12 666.1 Execution halted
> ------
> executor failed running [/bin/sh -c Rscript setup.R && rm setup.R]: exit code: 1
> {code}
>  



--
This message was sent by Atlassian Jira
(v8.20.1#820001)