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Posted to notifications@ctakes.apache.org by Apache Jenkins Server <je...@builds.apache.org> on 2017/10/31 01:04:58 UTC
Build failed in Jenkins: cTAKES-trunk-Java-1.8 #19
See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/19/display/redirect?page=changes>
Changes:
[alexz] CTAKES-465: fix deprecated FileLocator.getFullPath
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[INFO] ------------- Scan Apache cTAKES Resources dictionary-lookup-fast-res
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[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res/target/sonar>
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[INFO] Analysis report uploaded in 2482ms
[INFO] ANALYSIS SUCCESSFUL, you can browse https://builds.apache.org/analysis/dashboard/index/org.apache.ctakes:ctakes
[INFO] Note that you will be able to access the updated dashboard once the server has processed the submitted analysis report
[INFO] More about the report processing at https://builds.apache.org/analysis/api/ce/task?id=AV9v9M_QiuI1oxQxO_wN
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[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ...................................... SUCCESS [05:23 min]
[INFO] ctakes-gui-res ..................................... SUCCESS [ 4.557 s]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [ 2.656 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [ 6.999 s]
[INFO] Apache cTAKES utils ................................ SUCCESS [ 3.956 s]
[INFO] Apache cTAKES core ................................. SUCCESS [ 22.696 s]
[INFO] ctakes-gui ......................................... SUCCESS [ 4.181 s]
[INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [ 3.287 s]
[INFO] Apache cTAKES part-of-speech tagger ................ SUCCESS [ 4.987 s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [ 3.367 s]
[INFO] Apache cTAKES chunker .............................. SUCCESS [ 3.433 s]
[INFO] Apache cTAKES document preprocessor ................ SUCCESS [ 3.724 s]
[INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [ 10.454 s]
[INFO] Apache cTAKES dictionary lookup .................... SUCCESS [ 5.948 s]
[INFO] Apache cTAKES context dependent tokenizer .......... SUCCESS [ 5.173 s]
[INFO] Apache cTAKES Resources lvg ........................ SUCCESS [ 26.089 s]
[INFO] Apache cTAKES LVG lexical tools .................... SUCCESS [ 4.879 s]
[INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [ 3.551 s]
[INFO] Apache cTAKES named entity contexts ................ SUCCESS [ 4.444 s]
[INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [ 5.050 s]
[INFO] Apache cTAKES Constituency Parser .................. SUCCESS [ 3.269 s]
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [ 7.042 s]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [ 3.042 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [ 2.536 s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [ 3.254 s]
[INFO] Apache cTAKES dictionary lookup fast ............... SUCCESS [ 3.223 s]
[INFO] Apache cTAKES Resources assertion .................. SUCCESS [ 4.409 s]
[INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [ 20.788 s]
[INFO] Apache cTAKES Dependency Parser .................... SUCCESS [ 37.054 s]
[INFO] Apache cTAKES Assertion ............................ SUCCESS [ 6.399 s]
[INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [ 2.381 s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SUCCESS [ 6.318 s]
[INFO] Apache cTAKES Relation Extractor ................... SUCCESS [ 9.783 s]
[INFO] Apache cTAKES Temporal Information Extraction ...... FAILURE [15:12 min]
[INFO] Apache cTAKES CoReference Resolver ................. SKIPPED
[INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [ 2.530 s]
[INFO] Apache cTAKES Drug NER ............................. SUCCESS [ 6.878 s]
[INFO] Apache cTAKES Resources side-effect ................ SUCCESS [ 2.483 s]
[INFO] Apache cTAKES Side Effects ......................... SUCCESS [ 6.285 s]
[INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [ 2.559 s]
[INFO] Apache cTAKES Smoking Status ....................... SUCCESS [ 6.717 s]
[INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [ 2.458 s]
[INFO] Apache cTAKES Assertion's zoner .................... SUCCESS [ 3.046 s]
[INFO] ctakes-examples-res ................................ SUCCESS [ 2.476 s]
[INFO] ctakes-examples .................................... SKIPPED
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [ 2.388 s]
[INFO] Apache cTAKES YTEX ................................. FAILURE [01:20 min]
[INFO] Apache cTAKES YTEX UIMA ............................ SKIPPED
[INFO] Apache cTAKES YTEX Web ............................. SKIPPED
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... FAILURE [ 12.699 s]
[INFO] Apache cTAKES template filler ...................... SUCCESS [ 7.782 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 28:39 min
[INFO] Finished at: 2017-10-31T01:04:32Z
[INFO] Final Memory: 144M/1650M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (default-test) on project ctakes-temporal: Failure or timeout -> [Help 1]
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (surefire-it) on project ctakes-ytex: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 2]
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (default-test) on project ctakes-regression-test: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-regression-test/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 2]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException
[ERROR] [Help 2] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-temporal
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channel stopped
Build failed in Jenkins: cTAKES-trunk-Java-1.8 #37
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/37/display/redirect?page=changes>
Changes:
[tmill] Fix to patient-aware coreference with new API. Compiles and evaluates correctly.
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[INFO] ------------- Scan Apache cTAKES dictionary lookup fast
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/sonar>
[INFO] Source paths: pom.xml, src/main/java
[INFO] Test paths: src/test/java
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 49 files indexed
[INFO] Quality profile for java: Sonar way
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[INFO] ------------- Scan Apache cTAKES Resources dictionary-lookup-fast-res
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res/target/sonar>
[INFO] Source paths: pom.xml
[INFO] Binary dirs: target/classes
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[INFO] ------------- Scan Apache cTAKES
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/target/sonar>
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[INFO] Analysis report generated in 1789ms, dir size=18 MB
[INFO] Analysis reports compressed in 3835ms, zip size=7 MB
[INFO] Analysis report uploaded in 2571ms
[INFO] ANALYSIS SUCCESSFUL, you can browse https://builds.apache.org/analysis/dashboard/index/org.apache.ctakes:ctakes
[INFO] Note that you will be able to access the updated dashboard once the server has processed the submitted analysis report
[INFO] More about the report processing at https://builds.apache.org/analysis/api/ce/task?id=AV_LtiI5mqiS_xQKKaVk
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[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ...................................... SUCCESS [05:13 min]
[INFO] ctakes-gui-res ..................................... SUCCESS [ 4.837 s]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [ 2.762 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [ 9.659 s]
[INFO] Apache cTAKES utils ................................ SUCCESS [ 4.953 s]
[INFO] Apache cTAKES core ................................. SUCCESS [ 25.558 s]
[INFO] ctakes-gui ......................................... SUCCESS [ 4.812 s]
[INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [ 3.382 s]
[INFO] Apache cTAKES part-of-speech tagger ................ SUCCESS [ 5.999 s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [ 3.525 s]
[INFO] Apache cTAKES chunker .............................. SUCCESS [ 4.042 s]
[INFO] Apache cTAKES document preprocessor ................ SUCCESS [ 4.098 s]
[INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [ 48.318 s]
[INFO] Apache cTAKES dictionary lookup .................... SUCCESS [ 26.431 s]
[INFO] Apache cTAKES context dependent tokenizer .......... SUCCESS [ 53.254 s]
[INFO] Apache cTAKES Resources lvg ........................ SUCCESS [01:30 min]
[INFO] Apache cTAKES LVG lexical tools .................... SUCCESS [01:03 min]
[INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [ 54.430 s]
[INFO] Apache cTAKES named entity contexts ................ SUCCESS [01:09 min]
[INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [01:27 min]
[INFO] Apache cTAKES Constituency Parser .................. SUCCESS [01:09 min]
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [01:11 min]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [ 47.567 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [01:08 min]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [01:28 min]
[INFO] Apache cTAKES dictionary lookup fast ............... SUCCESS [01:32 min]
[INFO] Apache cTAKES Resources assertion .................. SUCCESS [ 52.649 s]
[INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [01:10 min]
[INFO] Apache cTAKES Dependency Parser .................... SUCCESS [01:42 min]
[INFO] Apache cTAKES Assertion ............................ SUCCESS [ 18.834 s]
[INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [ 2.519 s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SUCCESS [ 6.729 s]
[INFO] Apache cTAKES Relation Extractor ................... SUCCESS [ 36.039 s]
[INFO] Apache cTAKES Temporal Information Extraction ...... SUCCESS [02:08 min]
[INFO] Apache cTAKES CoReference Resolver ................. FAILURE [ 56.172 s]
[INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [ 35.137 s]
[INFO] Apache cTAKES Drug NER ............................. SUCCESS [ 42.828 s]
[INFO] Apache cTAKES Resources side-effect ................ SUCCESS [ 35.904 s]
[INFO] Apache cTAKES Side Effects ......................... SUCCESS [ 52.429 s]
[INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [ 31.857 s]
[INFO] Apache cTAKES Smoking Status ....................... SUCCESS [ 6.521 s]
[INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [ 2.583 s]
[INFO] Apache cTAKES Assertion's zoner .................... SUCCESS [ 4.519 s]
[INFO] ctakes-examples-res ................................ SUCCESS [ 2.957 s]
[INFO] ctakes-examples .................................... SKIPPED
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [ 22.086 s]
[INFO] Apache cTAKES YTEX ................................. SUCCESS [01:45 min]
[INFO] Apache cTAKES YTEX UIMA ............................ FAILURE [03:07 min]
[INFO] Apache cTAKES YTEX Web ............................. SUCCESS [02:16 min]
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... SKIPPED
[INFO] Apache cTAKES template filler ...................... SUCCESS [01:17 min]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 01:01 h
[INFO] Finished at: 2017-11-17T20:49:56Z
[INFO] Final Memory: 173M/3345M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.4:compile (default-compile) on project ctakes-coreference: Compilation failure
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/eval/EvaluationOfEventCoreference.java>:[21,45] error: package jdk.internal.org.objectweb.asm.commons does not exist
[ERROR] -> [Help 1]
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (surefire-it) on project ctakes-ytex-uima: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex-uima/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-coreference
Sending e-mails to: notifications@ctakes.apache.org
Sending e-mails to: notifications@ctakes.apache.org tmill@apache.org
Sending e-mails to: notifications@ctakes.apache.org
channel stopped
Build failed in Jenkins: cTAKES-trunk-Java-1.8 #36
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/36/display/redirect?page=changes>
Changes:
[alexz] CTAKES-458: Upgrade apache parent pom, fix apache-rat
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[INFO] ------------- Scan Apache cTAKES dictionary lookup fast
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[INFO] ------------- Scan Apache cTAKES Resources dictionary-lookup-fast-res
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res/target/sonar>
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[INFO] ------------- Scan Apache cTAKES
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/target/sonar>
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[INFO] Analysis report generated in 1651ms, dir size=18 MB
[INFO] Analysis reports compressed in 3485ms, zip size=7 MB
[INFO] Analysis report uploaded in 3159ms
[INFO] ANALYSIS SUCCESSFUL, you can browse https://builds.apache.org/analysis/dashboard/index/org.apache.ctakes:ctakes
[INFO] Note that you will be able to access the updated dashboard once the server has processed the submitted analysis report
[INFO] More about the report processing at https://builds.apache.org/analysis/api/ce/task?id=AV_LeSrTmqiS_xQKKaVj
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[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ...................................... SUCCESS [05:28 min]
[INFO] ctakes-gui-res ..................................... SUCCESS [ 4.545 s]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [ 2.815 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [ 7.547 s]
[INFO] Apache cTAKES utils ................................ SUCCESS [ 4.040 s]
[INFO] Apache cTAKES core ................................. SUCCESS [ 35.919 s]
[INFO] ctakes-gui ......................................... SUCCESS [ 17.500 s]
[INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [ 3.542 s]
[INFO] Apache cTAKES part-of-speech tagger ................ SUCCESS [ 5.401 s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [ 3.356 s]
[INFO] Apache cTAKES chunker .............................. SUCCESS [ 3.879 s]
[INFO] Apache cTAKES document preprocessor ................ SUCCESS [ 5.323 s]
[INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [ 23.779 s]
[INFO] Apache cTAKES dictionary lookup .................... SUCCESS [ 4.909 s]
[INFO] Apache cTAKES context dependent tokenizer .......... SUCCESS [ 5.804 s]
[INFO] Apache cTAKES Resources lvg ........................ SUCCESS [ 30.590 s]
[INFO] Apache cTAKES LVG lexical tools .................... SUCCESS [ 5.061 s]
[INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [ 2.595 s]
[INFO] Apache cTAKES named entity contexts ................ SUCCESS [ 4.576 s]
[INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [ 5.056 s]
[INFO] Apache cTAKES Constituency Parser .................. SUCCESS [ 3.563 s]
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [ 6.717 s]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [ 3.065 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [ 2.731 s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [ 4.455 s]
[INFO] Apache cTAKES dictionary lookup fast ............... SUCCESS [ 3.514 s]
[INFO] Apache cTAKES Resources assertion .................. SUCCESS [ 4.390 s]
[INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [ 34.330 s]
[INFO] Apache cTAKES Dependency Parser .................... SUCCESS [ 38.830 s]
[INFO] Apache cTAKES Assertion ............................ SUCCESS [ 6.356 s]
[INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [ 2.493 s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SUCCESS [ 6.516 s]
[INFO] Apache cTAKES Relation Extractor ................... SUCCESS [ 37.169 s]
[INFO] Apache cTAKES Temporal Information Extraction ...... FAILURE [15:09 min]
[INFO] Apache cTAKES CoReference Resolver ................. SKIPPED
[INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [ 3.060 s]
[INFO] Apache cTAKES Drug NER ............................. SUCCESS [ 10.546 s]
[INFO] Apache cTAKES Resources side-effect ................ SUCCESS [ 2.727 s]
[INFO] Apache cTAKES Side Effects ......................... SUCCESS [ 6.313 s]
[INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [ 3.006 s]
[INFO] Apache cTAKES Smoking Status ....................... SUCCESS [ 39.656 s]
[INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [ 46.725 s]
[INFO] Apache cTAKES Assertion's zoner .................... SUCCESS [01:22 min]
[INFO] ctakes-examples-res ................................ SUCCESS [ 36.332 s]
[INFO] ctakes-examples .................................... SKIPPED
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [01:09 min]
[INFO] Apache cTAKES YTEX ................................. SUCCESS [03:39 min]
[INFO] Apache cTAKES YTEX UIMA ............................ FAILURE [03:27 min]
[INFO] Apache cTAKES YTEX Web ............................. SUCCESS [04:36 min]
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... SKIPPED
[INFO] Apache cTAKES template filler ...................... SUCCESS [01:35 min]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 54:30 min
[INFO] Finished at: 2017-11-17T19:37:03Z
[INFO] Final Memory: 156M/3368M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (default-test) on project ctakes-temporal: Failure or timeout -> [Help 1]
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (surefire-it) on project ctakes-ytex-uima: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex-uima/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 2]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException
[ERROR] [Help 2] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-temporal
Sending e-mails to: notifications@ctakes.apache.org
Sending e-mails to: notifications@ctakes.apache.org
channel stopped
Build failed in Jenkins: cTAKES-trunk-Java-1.8 #35
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/35/display/redirect?page=changes>
Changes:
[seanfinan] Boyscouting, replace explicit maven-exec version numbers
[seanfinan] Add piper gui profile
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[INFO] ------------- Scan Apache cTAKES dictionary lookup fast
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/sonar>
[INFO] Source paths: pom.xml, src/main/java
[INFO] Test paths: src/test/java
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
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[INFO] 49 files indexed
[INFO] Quality profile for java: Sonar way
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[INFO] ------------- Scan Apache cTAKES Resources dictionary-lookup-fast-res
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res/target/sonar>
[INFO] Source paths: pom.xml
[INFO] Binary dirs: target/classes
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[INFO] ------------- Scan Apache cTAKES
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/target/sonar>
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[INFO] Analysis report generated in 1724ms, dir size=18 MB
[INFO] Analysis reports compressed in 3537ms, zip size=7 MB
[INFO] Analysis report uploaded in 2776ms
[INFO] ANALYSIS SUCCESSFUL, you can browse https://builds.apache.org/analysis/dashboard/index/org.apache.ctakes:ctakes
[INFO] Note that you will be able to access the updated dashboard once the server has processed the submitted analysis report
[INFO] More about the report processing at https://builds.apache.org/analysis/api/ce/task?id=AV_K-1camqiS_xQKKaVh
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[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ...................................... SUCCESS [05:00 min]
[INFO] ctakes-gui-res ..................................... SUCCESS [ 4.830 s]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [ 2.871 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [ 8.680 s]
[INFO] Apache cTAKES utils ................................ SUCCESS [ 4.407 s]
[INFO] Apache cTAKES core ................................. SUCCESS [ 24.226 s]
[INFO] ctakes-gui ......................................... SUCCESS [ 4.688 s]
[INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [ 3.416 s]
[INFO] Apache cTAKES part-of-speech tagger ................ SUCCESS [ 5.581 s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [ 15.705 s]
[INFO] Apache cTAKES chunker .............................. SUCCESS [ 3.781 s]
[INFO] Apache cTAKES document preprocessor ................ SUCCESS [ 4.231 s]
[INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [ 21.187 s]
[INFO] Apache cTAKES dictionary lookup .................... SUCCESS [ 4.990 s]
[INFO] Apache cTAKES context dependent tokenizer .......... SUCCESS [ 5.475 s]
[INFO] Apache cTAKES Resources lvg ........................ SUCCESS [ 50.276 s]
[INFO] Apache cTAKES LVG lexical tools .................... SUCCESS [ 6.140 s]
[INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [ 2.533 s]
[INFO] Apache cTAKES named entity contexts ................ SUCCESS [ 4.807 s]
[INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [ 5.048 s]
[INFO] Apache cTAKES Constituency Parser .................. SUCCESS [ 3.503 s]
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [ 7.230 s]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [ 3.046 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [ 2.543 s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [ 3.968 s]
[INFO] Apache cTAKES dictionary lookup fast ............... SUCCESS [ 4.782 s]
[INFO] Apache cTAKES Resources assertion .................. SUCCESS [ 4.530 s]
[INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [ 18.258 s]
[INFO] Apache cTAKES Dependency Parser .................... SUCCESS [ 44.046 s]
[INFO] Apache cTAKES Assertion ............................ SUCCESS [ 7.003 s]
[INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [ 2.500 s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SUCCESS [ 7.289 s]
[INFO] Apache cTAKES Relation Extractor ................... SUCCESS [ 11.733 s]
[INFO] Apache cTAKES Temporal Information Extraction ...... SUCCESS [02:19 min]
[INFO] Apache cTAKES CoReference Resolver ................. SUCCESS [ 11.200 s]
[INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [ 2.580 s]
[INFO] Apache cTAKES Drug NER ............................. SUCCESS [ 7.264 s]
[INFO] Apache cTAKES Resources side-effect ................ SUCCESS [ 2.914 s]
[INFO] Apache cTAKES Side Effects ......................... SUCCESS [ 20.588 s]
[INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [ 2.729 s]
[INFO] Apache cTAKES Smoking Status ....................... SUCCESS [ 6.881 s]
[INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [ 2.757 s]
[INFO] Apache cTAKES Assertion's zoner .................... SUCCESS [ 3.233 s]
[INFO] ctakes-examples-res ................................ SUCCESS [ 2.507 s]
[INFO] ctakes-examples .................................... SUCCESS [ 9.153 s]
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [ 16.808 s]
[INFO] Apache cTAKES YTEX ................................. SUCCESS [01:26 min]
[INFO] Apache cTAKES YTEX UIMA ............................ FAILURE [01:51 min]
[INFO] Apache cTAKES YTEX Web ............................. SUCCESS [01:18 min]
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... SUCCESS [ 11.062 s]
[INFO] Apache cTAKES template filler ...................... SUCCESS [ 23.742 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 25:52 min
[INFO] Finished at: 2017-11-17T17:21:38Z
[INFO] Final Memory: 195M/3370M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (surefire-it) on project ctakes-ytex-uima: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex-uima/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-ytex-uima
Sending e-mails to: notifications@ctakes.apache.org
Sending e-mails to: notifications@ctakes.apache.org
channel stopped
Build failed in Jenkins: cTAKES-trunk-Java-1.8 #34
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/34/display/redirect?page=changes>
Changes:
[seanfinan] Fix for typo (inattentiveness)
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[INFO] ------------- Scan Apache cTAKES dictionary lookup fast
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[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/sonar>
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[INFO] ------------- Scan Apache cTAKES Resources dictionary-lookup-fast-res
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res/target/sonar>
[INFO] Source paths: pom.xml
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
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[INFO] Sensor Zero Coverage Sensor
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[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] ------------- Scan Apache cTAKES
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/target/sonar>
[INFO] Source encoding: UTF-8, default locale: en_US
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[INFO] Sensor XmlFileSensor
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[INFO] Calculating CPD for 1099 files
[INFO] CPD calculation finished
[INFO] Analysis report generated in 1411ms, dir size=18 MB
[INFO] Analysis reports compressed in 2806ms, zip size=7 MB
[INFO] Analysis report uploaded in 3373ms
[INFO] ANALYSIS SUCCESSFUL, you can browse https://builds.apache.org/analysis/dashboard/index/org.apache.ctakes:ctakes
[INFO] Note that you will be able to access the updated dashboard once the server has processed the submitted analysis report
[INFO] More about the report processing at https://builds.apache.org/analysis/api/ce/task?id=AV_Ka0BBmqiS_xQKKaVf
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[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ...................................... SUCCESS [04:11 min]
[INFO] ctakes-gui-res ..................................... SUCCESS [ 55.381 s]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [ 38.848 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [01:12 min]
[INFO] Apache cTAKES utils ................................ SUCCESS [ 39.740 s]
[INFO] Apache cTAKES core ................................. SUCCESS [03:45 min]
[INFO] ctakes-gui ......................................... SUCCESS [01:11 min]
[INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [01:10 min]
[INFO] Apache cTAKES part-of-speech tagger ................ SUCCESS [01:11 min]
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [ 52.283 s]
[INFO] Apache cTAKES chunker .............................. SUCCESS [01:20 min]
[INFO] Apache cTAKES document preprocessor ................ SUCCESS [ 13.555 s]
[INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [ 9.676 s]
[INFO] Apache cTAKES dictionary lookup .................... SUCCESS [ 4.862 s]
[INFO] Apache cTAKES context dependent tokenizer .......... SUCCESS [ 4.747 s]
[INFO] Apache cTAKES Resources lvg ........................ SUCCESS [ 30.750 s]
[INFO] Apache cTAKES LVG lexical tools .................... SUCCESS [ 4.817 s]
[INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [ 2.499 s]
[INFO] Apache cTAKES named entity contexts ................ SUCCESS [ 4.650 s]
[INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [ 4.780 s]
[INFO] Apache cTAKES Constituency Parser .................. SUCCESS [ 4.752 s]
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [ 7.860 s]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [ 3.073 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [ 14.380 s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [ 3.398 s]
[INFO] Apache cTAKES dictionary lookup fast ............... SUCCESS [ 3.354 s]
[INFO] Apache cTAKES Resources assertion .................. SUCCESS [ 4.262 s]
[INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [ 23.007 s]
[INFO] Apache cTAKES Dependency Parser .................... SUCCESS [ 41.665 s]
[INFO] Apache cTAKES Assertion ............................ SUCCESS [ 6.191 s]
[INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [ 2.435 s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SUCCESS [ 6.427 s]
[INFO] Apache cTAKES Relation Extractor ................... SUCCESS [ 10.245 s]
[INFO] Apache cTAKES Temporal Information Extraction ...... SUCCESS [01:57 min]
[INFO] Apache cTAKES CoReference Resolver ................. SUCCESS [ 9.176 s]
[INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [ 2.534 s]
[INFO] Apache cTAKES Drug NER ............................. SUCCESS [ 6.668 s]
[INFO] Apache cTAKES Resources side-effect ................ SUCCESS [ 2.547 s]
[INFO] Apache cTAKES Side Effects ......................... SUCCESS [ 6.279 s]
[INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [ 2.801 s]
[INFO] Apache cTAKES Smoking Status ....................... SUCCESS [ 7.026 s]
[INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [ 2.509 s]
[INFO] Apache cTAKES Assertion's zoner .................... SUCCESS [ 3.387 s]
[INFO] ctakes-examples-res ................................ SUCCESS [ 2.447 s]
[INFO] ctakes-examples .................................... SUCCESS [ 8.133 s]
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [ 19.406 s]
[INFO] Apache cTAKES YTEX ................................. FAILURE [ 16.345 s]
[INFO] Apache cTAKES YTEX UIMA ............................ SKIPPED
[INFO] Apache cTAKES YTEX Web ............................. SKIPPED
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... SUCCESS [ 9.137 s]
[INFO] Apache cTAKES template filler ...................... SUCCESS [ 7.138 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 30:29 min
[INFO] Finished at: 2017-11-17T14:39:46Z
[INFO] Final Memory: 161M/3369M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-antrun-plugin:1.6:run (generate-test-config) on project ctakes-ytex: An Ant BuildException has occured: The following error occurred while executing this line:
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex/scripts/build-setup.xml>:149: The following error occurred while executing this line:
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex/scripts/data/build.xml>:124: java.sql.SQLException: Database lock acquisition failure: lockFile: org.hsqldb.persist.LockFile@72d2ec59[file =/tmp/ctakes-test-hsqldb/ctakes/ctakes.lck, exists=false, locked=false, valid=false, ] method: openRAF reason: java.io.FileNotFoundException: /tmp/ctakes-test-hsqldb/ctakes/ctakes.lck (Permission denied)
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-ytex
Sending e-mails to: notifications@ctakes.apache.org
Sending e-mails to: notifications@ctakes.apache.org
channel stopped
Build failed in Jenkins: cTAKES-trunk-Java-1.8 #33
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/33/display/redirect>
------------------------------------------
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[INFO] ------------- Scan Apache cTAKES dictionary lookup fast
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/sonar>
[INFO] Source paths: pom.xml, src/main/java
[INFO] Test paths: src/test/java
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 49 files indexed
[INFO] Quality profile for java: Sonar way
[INFO] Sensor Lines Sensor
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[INFO] Sensor JavaSquidSensor
[INFO] Configured Java source version (sonar.java.source): 8
[INFO] JavaClasspath initialization
[INFO] JavaClasspath initialization (done) | time=1ms
[INFO] JavaTestClasspath initialization
[INFO] JavaTestClasspath initialization (done) | time=0ms
[INFO] Java Main Files AST scan
[INFO] 46 source files to be analyzed
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[INFO] Sensor Unit Test Results Import
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[INFO] Sensor SurefireSensor
[INFO] parsing <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/surefire-reports>
[INFO] Sensor SurefireSensor (done) | time=0ms
[INFO] Sensor JaCoCoSensor
[INFO] JaCoCoSensor: JaCoCo report not found : <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco.exec>
[INFO] Sensor JaCoCoSensor (done) | time=0ms
[INFO] Sensor JaCoCoItSensor
[INFO] JaCoCoItSensor: JaCoCo IT report not found: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco-it.exec>
[INFO] Sensor JaCoCoItSensor (done) | time=0ms
[INFO] Sensor JaCoCoOverallSensor
[INFO] Sensor JaCoCoOverallSensor (done) | time=0ms
[INFO] Sensor XmlFileSensor
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[INFO] Sensor Zero Coverage Sensor
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[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=1ms
[INFO] Sensor CPD Block Indexer
[INFO] JavaCpdBlockIndexer is used for java
[INFO] Sensor CPD Block Indexer (done) | time=63ms
[INFO] ------------- Scan Apache cTAKES Resources dictionary-lookup-fast-res
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res/target/sonar>
[INFO] Source paths: pom.xml
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 0 files indexed
[INFO] Sensor Lines Sensor
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[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] ------------- Scan Apache cTAKES
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/target/sonar>
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[INFO] Analysis report generated in 1576ms, dir size=18 MB
[INFO] Analysis reports compressed in 3415ms, zip size=7 MB
[INFO] Analysis report uploaded in 3024ms
[INFO] ANALYSIS SUCCESSFUL, you can browse https://builds.apache.org/analysis/dashboard/index/org.apache.ctakes:ctakes
[INFO] Note that you will be able to access the updated dashboard once the server has processed the submitted analysis report
[INFO] More about the report processing at https://builds.apache.org/analysis/api/ce/task?id=AV_KRFLRmqiS_xQKKaVe
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[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ...................................... SUCCESS [04:51 min]
[INFO] ctakes-gui-res ..................................... SUCCESS [ 4.729 s]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [ 2.930 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [ 7.377 s]
[INFO] Apache cTAKES utils ................................ SUCCESS [ 3.930 s]
[INFO] Apache cTAKES core ................................. SUCCESS [01:13 min]
[INFO] ctakes-gui ......................................... SUCCESS [ 4.199 s]
[INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [ 16.068 s]
[INFO] Apache cTAKES part-of-speech tagger ................ SUCCESS [ 5.081 s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [ 3.677 s]
[INFO] Apache cTAKES chunker .............................. SUCCESS [ 3.972 s]
[INFO] Apache cTAKES document preprocessor ................ SUCCESS [ 3.978 s]
[INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [ 11.761 s]
[INFO] Apache cTAKES dictionary lookup .................... SUCCESS [ 5.477 s]
[INFO] Apache cTAKES context dependent tokenizer .......... SUCCESS [ 6.280 s]
[INFO] Apache cTAKES Resources lvg ........................ SUCCESS [ 29.047 s]
[INFO] Apache cTAKES LVG lexical tools .................... SUCCESS [ 22.666 s]
[INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [ 20.604 s]
[INFO] Apache cTAKES named entity contexts ................ SUCCESS [ 19.684 s]
[INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [ 22.288 s]
[INFO] Apache cTAKES Constituency Parser .................. SUCCESS [ 19.059 s]
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [ 20.228 s]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [ 18.837 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [ 18.085 s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [ 21.574 s]
[INFO] Apache cTAKES dictionary lookup fast ............... SUCCESS [ 21.398 s]
[INFO] Apache cTAKES Resources assertion .................. SUCCESS [ 34.779 s]
[INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [01:15 min]
[INFO] Apache cTAKES Dependency Parser .................... SUCCESS [01:10 min]
[INFO] Apache cTAKES Assertion ............................ SUCCESS [ 37.324 s]
[INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [ 17.478 s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SUCCESS [ 18.566 s]
[INFO] Apache cTAKES Relation Extractor ................... SUCCESS [ 52.661 s]
[INFO] Apache cTAKES Temporal Information Extraction ...... FAILURE [16:00 min]
[INFO] Apache cTAKES CoReference Resolver ................. SKIPPED
[INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [ 19.843 s]
[INFO] Apache cTAKES Drug NER ............................. SUCCESS [ 57.911 s]
[INFO] Apache cTAKES Resources side-effect ................ SUCCESS [ 18.736 s]
[INFO] Apache cTAKES Side Effects ......................... SUCCESS [ 53.495 s]
[INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [ 35.011 s]
[INFO] Apache cTAKES Smoking Status ....................... SUCCESS [ 52.183 s]
[INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [ 22.280 s]
[INFO] Apache cTAKES Assertion's zoner .................... SUCCESS [ 18.380 s]
[INFO] ctakes-examples-res ................................ SUCCESS [ 36.444 s]
[INFO] ctakes-examples .................................... SKIPPED
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [ 34.157 s]
[INFO] Apache cTAKES YTEX ................................. SUCCESS [03:02 min]
[INFO] Apache cTAKES YTEX UIMA ............................ FAILURE [02:42 min]
[INFO] Apache cTAKES YTEX Web ............................. SUCCESS [02:11 min]
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... SKIPPED
[INFO] Apache cTAKES template filler ...................... SUCCESS [ 38.990 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 56:17 min
[INFO] Finished at: 2017-11-17T14:00:16Z
[INFO] Final Memory: 158M/3364M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (default-test) on project ctakes-temporal: Failure or timeout -> [Help 1]
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (surefire-it) on project ctakes-ytex-uima: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex-uima/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 2]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException
[ERROR] [Help 2] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-temporal
Sending e-mails to: notifications@ctakes.apache.org
Sending e-mails to: notifications@ctakes.apache.org
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Build failed in Jenkins: cTAKES-trunk-Java-1.8 #32
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/32/display/redirect>
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[INFO] ------------- Scan Apache cTAKES dictionary lookup fast
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/sonar>
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[INFO] ------------- Scan Apache cTAKES Resources dictionary-lookup-fast-res
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res/target/sonar>
[INFO] Source paths: pom.xml
[INFO] Binary dirs: target/classes
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[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] ------------- Scan Apache cTAKES
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/target/sonar>
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[INFO] Calculating CPD for 1099 files
[INFO] CPD calculation finished
[INFO] Analysis report generated in 1349ms, dir size=18 MB
[INFO] Analysis reports compressed in 3064ms, zip size=7 MB
[INFO] Analysis report uploaded in 2305ms
[INFO] ANALYSIS SUCCESSFUL, you can browse https://builds.apache.org/analysis/dashboard/index/org.apache.ctakes:ctakes
[INFO] Note that you will be able to access the updated dashboard once the server has processed the submitted analysis report
[INFO] More about the report processing at https://builds.apache.org/analysis/api/ce/task?id=AV_HccI5mqiS_xQKKaVQ
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[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ...................................... SUCCESS [04:07 min]
[INFO] ctakes-gui-res ..................................... SUCCESS [ 4.132 s]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [ 2.632 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [ 6.372 s]
[INFO] Apache cTAKES utils ................................ SUCCESS [ 3.393 s]
[INFO] Apache cTAKES core ................................. SUCCESS [ 21.627 s]
[INFO] ctakes-gui ......................................... SUCCESS [ 3.754 s]
[INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [ 3.173 s]
[INFO] Apache cTAKES part-of-speech tagger ................ SUCCESS [ 4.950 s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [ 3.306 s]
[INFO] Apache cTAKES chunker .............................. SUCCESS [ 3.332 s]
[INFO] Apache cTAKES document preprocessor ................ SUCCESS [ 3.807 s]
[INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [ 10.139 s]
[INFO] Apache cTAKES dictionary lookup .................... SUCCESS [ 4.509 s]
[INFO] Apache cTAKES context dependent tokenizer .......... SUCCESS [ 4.934 s]
[INFO] Apache cTAKES Resources lvg ........................ SUCCESS [ 38.079 s]
[INFO] Apache cTAKES LVG lexical tools .................... SUCCESS [ 4.553 s]
[INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [ 2.581 s]
[INFO] Apache cTAKES named entity contexts ................ SUCCESS [ 4.265 s]
[INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [ 4.812 s]
[INFO] Apache cTAKES Constituency Parser .................. SUCCESS [ 3.230 s]
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [ 6.666 s]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [ 2.887 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [ 2.652 s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [ 3.203 s]
[INFO] Apache cTAKES dictionary lookup fast ............... SUCCESS [ 3.071 s]
[INFO] Apache cTAKES Resources assertion .................. SUCCESS [ 4.015 s]
[INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [ 22.995 s]
[INFO] Apache cTAKES Dependency Parser .................... SUCCESS [ 38.441 s]
[INFO] Apache cTAKES Assertion ............................ SUCCESS [ 5.964 s]
[INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [ 2.365 s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SUCCESS [ 6.575 s]
[INFO] Apache cTAKES Relation Extractor ................... SUCCESS [ 9.524 s]
[INFO] Apache cTAKES Temporal Information Extraction ...... SUCCESS [01:50 min]
[INFO] Apache cTAKES CoReference Resolver ................. SUCCESS [ 9.146 s]
[INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [ 2.522 s]
[INFO] Apache cTAKES Drug NER ............................. SUCCESS [ 6.706 s]
[INFO] Apache cTAKES Resources side-effect ................ SUCCESS [ 2.777 s]
[INFO] Apache cTAKES Side Effects ......................... SUCCESS [ 6.137 s]
[INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [ 2.486 s]
[INFO] Apache cTAKES Smoking Status ....................... SUCCESS [ 6.783 s]
[INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [ 2.434 s]
[INFO] Apache cTAKES Assertion's zoner .................... SUCCESS [ 3.074 s]
[INFO] ctakes-examples-res ................................ SUCCESS [ 2.427 s]
[INFO] ctakes-examples .................................... SUCCESS [ 8.721 s]
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [ 2.503 s]
[INFO] Apache cTAKES YTEX ................................. FAILURE [ 16.528 s]
[INFO] Apache cTAKES YTEX UIMA ............................ SKIPPED
[INFO] Apache cTAKES YTEX Web ............................. SKIPPED
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... SUCCESS [ 10.198 s]
[INFO] Apache cTAKES template filler ...................... SUCCESS [ 7.663 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 13:40 min
[INFO] Finished at: 2017-11-17T00:48:01Z
[INFO] Final Memory: 143M/1631M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-antrun-plugin:1.6:run (generate-test-config) on project ctakes-ytex: An Ant BuildException has occured: The following error occurred while executing this line:
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex/scripts/build-setup.xml>:149: The following error occurred while executing this line:
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex/scripts/data/build.xml>:124: java.sql.SQLException: Database lock acquisition failure: lockFile: org.hsqldb.persist.LockFile@72d2ec59[file =/tmp/ctakes-test-hsqldb/ctakes/ctakes.lck, exists=false, locked=false, valid=false, ] method: openRAF reason: java.io.FileNotFoundException: /tmp/ctakes-test-hsqldb/ctakes/ctakes.lck (Permission denied)
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-ytex
Sending e-mails to: notifications@ctakes.apache.org
channel stopped
Build failed in Jenkins: cTAKES-trunk-Java-1.8 #31
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/31/display/redirect?page=changes>
Changes:
[alexz] CTAKES-480: fix pom.xml to remove exclusion for apache-profile
[alexz] CTAKES-479: add UmlsEnvironmentConfiguration.java
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[INFO] ------------- Scan Apache cTAKES dictionary lookup fast
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/sonar>
[INFO] Source paths: pom.xml, src/main/java
[INFO] Test paths: src/test/java
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 49 files indexed
[INFO] Quality profile for java: Sonar way
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=1ms
[INFO] Sensor JavaSquidSensor
[INFO] Configured Java source version (sonar.java.source): 8
[INFO] JavaClasspath initialization
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[INFO] JavaTestClasspath initialization
[INFO] JavaTestClasspath initialization (done) | time=0ms
[INFO] Java Main Files AST scan
[INFO] 46 source files to be analyzed
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[INFO] ------------- Scan Apache cTAKES Resources dictionary-lookup-fast-res
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res/target/sonar>
[INFO] Source paths: pom.xml
[INFO] Binary dirs: target/classes
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[INFO] ------------- Scan Apache cTAKES
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/target/sonar>
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[INFO] Sensor CPD Block Indexer
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[INFO] Calculating CPD for 1099 files
[INFO] CPD calculation finished
[INFO] Analysis report generated in 1442ms, dir size=18 MB
[INFO] Analysis reports compressed in 2827ms, zip size=7 MB
[INFO] Analysis report uploaded in 2162ms
[INFO] ANALYSIS SUCCESSFUL, you can browse https://builds.apache.org/analysis/dashboard/index/org.apache.ctakes:ctakes
[INFO] Note that you will be able to access the updated dashboard once the server has processed the submitted analysis report
[INFO] More about the report processing at https://builds.apache.org/analysis/api/ce/task?id=AV_HNOKTmqiS_xQKKaVP
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[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ...................................... SUCCESS [04:14 min]
[INFO] ctakes-gui-res ..................................... SUCCESS [ 4.150 s]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [ 2.600 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [ 7.354 s]
[INFO] Apache cTAKES utils ................................ SUCCESS [ 3.533 s]
[INFO] Apache cTAKES core ................................. SUCCESS [ 22.899 s]
[INFO] ctakes-gui ......................................... SUCCESS [ 3.923 s]
[INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [ 3.347 s]
[INFO] Apache cTAKES part-of-speech tagger ................ SUCCESS [ 5.453 s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [ 3.269 s]
[INFO] Apache cTAKES chunker .............................. SUCCESS [ 3.443 s]
[INFO] Apache cTAKES document preprocessor ................ SUCCESS [ 3.934 s]
[INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [ 9.470 s]
[INFO] Apache cTAKES dictionary lookup .................... SUCCESS [ 4.853 s]
[INFO] Apache cTAKES context dependent tokenizer .......... SUCCESS [ 5.441 s]
[INFO] Apache cTAKES Resources lvg ........................ SUCCESS [ 32.995 s]
[INFO] Apache cTAKES LVG lexical tools .................... SUCCESS [ 4.760 s]
[INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [ 2.397 s]
[INFO] Apache cTAKES named entity contexts ................ SUCCESS [ 4.548 s]
[INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [ 4.583 s]
[INFO] Apache cTAKES Constituency Parser .................. SUCCESS [ 3.648 s]
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [ 6.591 s]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [ 3.031 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [ 2.537 s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [ 3.240 s]
[INFO] Apache cTAKES dictionary lookup fast ............... SUCCESS [ 4.733 s]
[INFO] Apache cTAKES Resources assertion .................. SUCCESS [ 4.077 s]
[INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [ 22.424 s]
[INFO] Apache cTAKES Dependency Parser .................... SUCCESS [ 40.464 s]
[INFO] Apache cTAKES Assertion ............................ SUCCESS [ 5.865 s]
[INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [ 2.387 s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SUCCESS [ 7.144 s]
[INFO] Apache cTAKES Relation Extractor ................... SUCCESS [ 10.519 s]
[INFO] Apache cTAKES Temporal Information Extraction ...... SUCCESS [01:56 min]
[INFO] Apache cTAKES CoReference Resolver ................. SUCCESS [ 8.854 s]
[INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [ 2.591 s]
[INFO] Apache cTAKES Drug NER ............................. SUCCESS [ 7.277 s]
[INFO] Apache cTAKES Resources side-effect ................ SUCCESS [ 2.555 s]
[INFO] Apache cTAKES Side Effects ......................... SUCCESS [ 6.280 s]
[INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [ 2.583 s]
[INFO] Apache cTAKES Smoking Status ....................... SUCCESS [ 6.201 s]
[INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [ 2.739 s]
[INFO] Apache cTAKES Assertion's zoner .................... SUCCESS [ 3.081 s]
[INFO] ctakes-examples-res ................................ SUCCESS [ 2.571 s]
[INFO] ctakes-examples .................................... SUCCESS [ 8.372 s]
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [ 2.486 s]
[INFO] Apache cTAKES YTEX ................................. FAILURE [ 17.158 s]
[INFO] Apache cTAKES YTEX UIMA ............................ SKIPPED
[INFO] Apache cTAKES YTEX Web ............................. SKIPPED
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... SUCCESS [ 10.202 s]
[INFO] Apache cTAKES template filler ...................... SUCCESS [ 7.442 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 13:40 min
[INFO] Finished at: 2017-11-16T23:41:31Z
[INFO] Final Memory: 153M/1671M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-antrun-plugin:1.6:run (generate-test-config) on project ctakes-ytex: An Ant BuildException has occured: The following error occurred while executing this line:
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex/scripts/build-setup.xml>:149: The following error occurred while executing this line:
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex/scripts/data/build.xml>:124: java.sql.SQLException: Database lock acquisition failure: lockFile: org.hsqldb.persist.LockFile@72d2ec59[file =/tmp/ctakes-test-hsqldb/ctakes/ctakes.lck, exists=false, locked=false, valid=false, ] method: openRAF reason: java.io.FileNotFoundException: /tmp/ctakes-test-hsqldb/ctakes/ctakes.lck (Permission denied)
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-ytex
Sending e-mails to: notifications@ctakes.apache.org alexz@apache.org
Sending e-mails to: notifications@ctakes.apache.org sean.finan@tch.harvard.edu alexz@apache.org
Sending e-mails to: notifications@ctakes.apache.org alexz@apache.org
Sending e-mails to: notifications@ctakes.apache.org
channel stopped
Build failed in Jenkins: cTAKES-trunk-Java-1.8 #30
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/30/display/redirect?page=changes>
Changes:
[alexz] CTAKES-479: skip testCPE when UMLS credentials not exported as env vars
------------------------------------------
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[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/target/sonar>
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[INFO] Calculating CPD for 1098 files
[INFO] CPD calculation finished
[INFO] Analysis report generated in 1609ms, dir size=18 MB
[INFO] Analysis reports compressed in 2871ms, zip size=7 MB
[INFO] Analysis report uploaded in 2185ms
[INFO] ANALYSIS SUCCESSFUL, you can browse https://builds.apache.org/analysis/dashboard/index/org.apache.ctakes:ctakes
[INFO] Note that you will be able to access the updated dashboard once the server has processed the submitted analysis report
[INFO] More about the report processing at https://builds.apache.org/analysis/api/ce/task?id=AV_G_ACxmqiS_xQKKaVN
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[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ...................................... SUCCESS [04:47 min]
[INFO] ctakes-gui-res ..................................... SUCCESS [ 4.064 s]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [ 2.655 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [ 7.764 s]
[INFO] Apache cTAKES utils ................................ SUCCESS [ 3.901 s]
[INFO] Apache cTAKES core ................................. SUCCESS [ 25.973 s]
[INFO] ctakes-gui ......................................... SUCCESS [ 5.606 s]
[INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [ 3.632 s]
[INFO] Apache cTAKES part-of-speech tagger ................ SUCCESS [ 5.203 s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [ 3.293 s]
[INFO] Apache cTAKES chunker .............................. SUCCESS [ 3.581 s]
[INFO] Apache cTAKES document preprocessor ................ SUCCESS [ 3.756 s]
[INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [ 10.346 s]
[INFO] Apache cTAKES dictionary lookup .................... FAILURE [ 3.203 s]
[INFO] Apache cTAKES context dependent tokenizer .......... SUCCESS [ 4.597 s]
[INFO] Apache cTAKES Resources lvg ........................ SUCCESS [ 28.714 s]
[INFO] Apache cTAKES LVG lexical tools .................... SUCCESS [ 5.556 s]
[INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [ 2.502 s]
[INFO] Apache cTAKES named entity contexts ................ SUCCESS [ 5.736 s]
[INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [ 5.883 s]
[INFO] Apache cTAKES Constituency Parser .................. SUCCESS [ 3.840 s]
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [ 8.779 s]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [ 2.961 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [ 2.479 s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [ 3.096 s]
[INFO] Apache cTAKES dictionary lookup fast ............... FAILURE [ 1.773 s]
[INFO] Apache cTAKES Resources assertion .................. SUCCESS [ 3.855 s]
[INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [ 24.067 s]
[INFO] Apache cTAKES Dependency Parser .................... SUCCESS [ 51.913 s]
[INFO] Apache cTAKES Assertion ............................ SUCCESS [ 8.989 s]
[INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [ 2.695 s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SKIPPED
[INFO] Apache cTAKES Relation Extractor ................... SKIPPED
[INFO] Apache cTAKES Temporal Information Extraction ...... SKIPPED
[INFO] Apache cTAKES CoReference Resolver ................. SKIPPED
[INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [ 2.814 s]
[INFO] Apache cTAKES Drug NER ............................. SKIPPED
[INFO] Apache cTAKES Resources side-effect ................ SUCCESS [ 2.720 s]
[INFO] Apache cTAKES Side Effects ......................... SKIPPED
[INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [ 3.119 s]
[INFO] Apache cTAKES Smoking Status ....................... SKIPPED
[INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [ 2.541 s]
[INFO] Apache cTAKES Assertion's zoner .................... SUCCESS [ 3.064 s]
[INFO] ctakes-examples-res ................................ SUCCESS [ 2.505 s]
[INFO] ctakes-examples .................................... SKIPPED
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [ 2.362 s]
[INFO] Apache cTAKES YTEX ................................. SKIPPED
[INFO] Apache cTAKES YTEX UIMA ............................ SKIPPED
[INFO] Apache cTAKES YTEX Web ............................. SKIPPED
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... SKIPPED
[INFO] Apache cTAKES template filler ...................... SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 11:06 min
[INFO] Finished at: 2017-11-16T22:39:20Z
[INFO] Final Memory: 119M/1625M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.4:compile (default-compile) on project ctakes-dictionary-lookup: Compilation failure: Compilation failure:
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[22,32] error: cannot find symbol
[ERROR] symbol: class UmlsEnvironmentConfiguration
[ERROR] location: package org.apache.ctakes.core.ae
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/ThreadedUmlsDictionaryLookupAnnotator.java>:[21,32] error: cannot find symbol
[ERROR] symbol: class UmlsEnvironmentConfiguration
[ERROR] location: package org.apache.ctakes.core.ae
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/AssertionCuePhraseConsumerImpl.java>:[96,45] [unchecked] unchecked method invocation: method organizeByOffset in class BaseLookupConsumerImpl is applied to given types
[ERROR] required: Iterator<LookupHit>
[ERROR] found: Iterator
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/AssertionCuePhraseConsumerImpl.java>:[96,46] [unchecked] unchecked conversion
[ERROR] required: Iterator<LookupHit>
[ERROR] found: Iterator
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/algorithms/FirstTokenPermutationImpl.java>:[213,44] [unchecked] unchecked conversion
[ERROR] required: List<Integer>
[ERROR] found: List
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsToSnomedLuceneConsumerImpl.java>:[94,34] [deprecation] open(Directory) in IndexReader has been deprecated
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/LookupParseUtilitiesRefactor.java>:[87,72] [unchecked] unchecked conversion
[ERROR] required: List<Element>
[ERROR] found: List
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/LookupParseUtilitiesRefactor.java>:[161,95] [unchecked] unchecked conversion
[ERROR] required: List<Element>
[ERROR] found: List
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/LookupParseUtilitiesRefactor.java>:[174,23] [unchecked] unchecked method invocation: method addExcludeList in class LookupParseUtilitiesRefactor is applied to given types
[ERROR] required: DictionaryEngine,List<Element>
[ERROR] found: DictionaryEngine,List
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/LookupParseUtilitiesRefactor.java>:[174,60] [unchecked] unchecked conversion
[ERROR] required: List<Element>
[ERROR] found: List
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/LookupParseUtilitiesRefactor.java>:[205,72] [unchecked] unchecked conversion
[ERROR] required: List<Element>
[ERROR] found: List
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/LookupParseUtilitiesRefactor.java>:[302,64] [unchecked] unchecked conversion
[ERROR] required: List<Element>
[ERROR] found: List
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/strtable/FieldConstraintImpl.java>:[60,41] [unchecked] unchecked call to compareTo(T) as a member of the raw type Comparable
[ERROR] where T is a type-variable:
[ERROR] T extends Object declared in interface Comparable
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[75,75] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[76,78] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[77,76] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[78,74] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[80,36] error: cannot find symbol
[ERROR] symbol: variable UmlsEnvironmentConfiguration
[ERROR] location: class UmlsDictionaryLookupAnnotator
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[133,13] error: cannot find symbol
[ERROR] symbol: variable UmlsEnvironmentConfiguration
[ERROR] location: class UmlsDictionaryLookupAnnotator
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[135,13] error: cannot find symbol
[ERROR] symbol: variable UmlsEnvironmentConfiguration
[ERROR] location: class UmlsDictionaryLookupAnnotator
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/ThreadedUmlsDictionaryLookupAnnotator.java>:[47,88] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/ThreadedUmlsDictionaryLookupAnnotator.java>:[48,88] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/ThreadedUmlsDictionaryLookupAnnotator.java>:[49,86] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/ThreadedUmlsDictionaryLookupAnnotator.java>:[50,90] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/ThreadedUmlsDictionaryLookupAnnotator.java>:[51,31] error: cannot find symbol
[ERROR] symbol: variable UmlsEnvironmentConfiguration
[ERROR] location: class ThreadedUmlsDictionaryLookupAnnotator
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/assertion/CreateAssertionLuceneIndexFromDelimitedFile.java>:[266,15] [unchecked] unchecked call to put(K,V) as a member of the raw type Map
[ERROR] where K,V are type-variables:
[ERROR] K extends Object declared in interface Map
[ERROR] V extends Object declared in interface Map
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/assertion/CreateAssertionLuceneIndexFromDelimitedFile.java>:[389,19] [unchecked] unchecked method invocation: method sort in class Collections is applied to given types
[ERROR] required: List<T>,Comparator<? super T>
[ERROR] found: List,OffsetComparator
[ERROR] where T is a type-variable:
[ERROR] T extends Object declared in method <T>sort(List<T>,Comparator<? super T>)
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/assertion/CreateAssertionLuceneIndexFromDelimitedFile.java>:[389,20] [unchecked] unchecked conversion
[ERROR] -> [Help 1]
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.4:compile (default-compile) on project ctakes-dictionary-lookup-fast: Compilation failure: Compilation failure:
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/util/UmlsUserApprover.java>:[21,32] error: cannot find symbol
[ERROR] symbol: class UmlsEnvironmentConfiguration
[ERROR] location: package org.apache.ctakes.core.ae
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/util/UmlsUserApprover.java>:[187,77] error: cannot find symbol
[ERROR] symbol: class UmlsEnvironmentConfiguration
[ERROR] location: class UmlsUserApprover
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/ae/AbstractJCasTermAnnotator.java>:[106,54] [unchecked] unchecked cast
[ERROR] required: Class<? extends Annotation>
[ERROR] found: Class<CAP#1>
[ERROR] where CAP#1 is a fresh type-variable:
[ERROR] CAP#1 extends Object from capture of ?
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/util/UmlsUserApprover.java>:[78,79] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/util/UmlsUserApprover.java>:[82,78] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/util/UmlsUserApprover.java>:[86,76] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/util/UmlsUserApprover.java>:[93,76] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/util/UmlsUserApprover.java>:[193,59] error: cannot find symbol
[ERROR] symbol: variable UmlsEnvironmentConfiguration
[ERROR] location: class UmlsUserApprover
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/util/UmlsUserApprover.java>:[197,59] error: cannot find symbol
[ERROR] symbol: variable UmlsEnvironmentConfiguration
[ERROR] location: class UmlsUserApprover
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/ae/OverlapJCasTermAnnotator.java>:[223,12] [deprecation] DICTIONARY_DESCRIPTOR_KEY in JCasTermAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/ae/OverlapJCasTermAnnotator.java>:[231,12] [deprecation] DICTIONARY_DESCRIPTOR_KEY in JCasTermAnnotator has been deprecated
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-dictionary-lookup
Sending e-mails to: notifications@ctakes.apache.org alexz@apache.org
Sending e-mails to: notifications@ctakes.apache.org alexz@apache.org
channel stopped
Build failed in Jenkins: cTAKES-trunk-Java-1.8 #29
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/29/display/redirect?page=changes>
Changes:
[seanfinan] Followup checkin for patient view store
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[INFO] ------------- Scan Apache cTAKES Resources dictionary-lookup-fast-res
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res/target/sonar>
[INFO] Source paths: pom.xml
[INFO] Binary dirs: target/classes
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[INFO] ------------- Scan Apache cTAKES
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/target/sonar>
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[INFO] Calculating CPD for 1098 files
[INFO] CPD calculation finished
[INFO] Analysis report generated in 1518ms, dir size=18 MB
[INFO] Analysis reports compressed in 2990ms, zip size=7 MB
[INFO] Analysis report uploaded in 2240ms
[INFO] ANALYSIS SUCCESSFUL, you can browse https://builds.apache.org/analysis/dashboard/index/org.apache.ctakes:ctakes
[INFO] Note that you will be able to access the updated dashboard once the server has processed the submitted analysis report
[INFO] More about the report processing at https://builds.apache.org/analysis/api/ce/task?id=AV_GzOLhmqiS_xQKKaVL
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[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ...................................... SUCCESS [04:11 min]
[INFO] ctakes-gui-res ..................................... SUCCESS [ 4.756 s]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [ 2.982 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [ 7.710 s]
[INFO] Apache cTAKES utils ................................ SUCCESS [ 3.877 s]
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[INFO] Apache cTAKES core ................................. SUCCESS [ 23.779 s]
[INFO] ctakes-gui ......................................... SUCCESS [ 4.259 s]
[INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [ 3.506 s]
[INFO] Apache cTAKES part-of-speech tagger ................ SUCCESS [ 5.329 s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [ 4.068 s]
[INFO] Apache cTAKES chunker .............................. SUCCESS [ 3.619 s]
[INFO] Apache cTAKES document preprocessor ................ SUCCESS [ 3.977 s]
[INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [ 16.846 s]
[INFO] Apache cTAKES dictionary lookup .................... SUCCESS [ 4.402 s]
[INFO] Apache cTAKES context dependent tokenizer .......... SUCCESS [ 5.024 s]
[INFO] Apache cTAKES Resources lvg ........................ SUCCESS [ 27.385 s]
[INFO] Apache cTAKES LVG lexical tools .................... SUCCESS [ 7.898 s]
[INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [ 2.692 s]
[INFO] Apache cTAKES named entity contexts ................ SUCCESS [ 4.532 s]
[INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [ 4.887 s]
[INFO] Apache cTAKES Constituency Parser .................. SUCCESS [ 3.482 s]
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [ 7.205 s]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [ 3.304 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [ 2.869 s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [ 3.515 s]
[INFO] Apache cTAKES dictionary lookup fast ............... SUCCESS [ 3.393 s]
[INFO] Apache cTAKES Resources assertion .................. SUCCESS [ 4.397 s]
[INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [ 20.545 s]
[INFO] Apache cTAKES Dependency Parser .................... SUCCESS [ 37.938 s]
[INFO] Apache cTAKES Assertion ............................ SUCCESS [ 6.336 s]
[INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [ 2.584 s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SUCCESS [ 6.678 s]
[INFO] Apache cTAKES Relation Extractor ................... SUCCESS [ 10.210 s]
[INFO] Apache cTAKES Temporal Information Extraction ...... SUCCESS [01:47 min]
[INFO] Apache cTAKES CoReference Resolver ................. SUCCESS [ 9.327 s]
[INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [ 2.774 s]
[INFO] Apache cTAKES Drug NER ............................. SUCCESS [ 6.912 s]
[INFO] Apache cTAKES Resources side-effect ................ SUCCESS [ 2.916 s]
[INFO] Apache cTAKES Side Effects ......................... SUCCESS [ 6.418 s]
[INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [ 3.105 s]
[INFO] Apache cTAKES Smoking Status ....................... SUCCESS [ 6.329 s]
[INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [ 3.264 s]
[INFO] Apache cTAKES Assertion's zoner .................... SUCCESS [ 3.435 s]
[INFO] ctakes-examples-res ................................ SUCCESS [ 2.654 s]
[INFO] ctakes-examples .................................... SUCCESS [ 8.683 s]
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [ 2.815 s]
[INFO] Apache cTAKES YTEX ................................. SUCCESS [01:08 min]
[INFO] Apache cTAKES YTEX UIMA ............................ FAILURE [01:29 min]
[INFO] Apache cTAKES YTEX Web ............................. SUCCESS [01:02 min]
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... FAILURE [ 12.100 s]
[INFO] Apache cTAKES template filler ...................... SUCCESS [ 7.664 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 17:21 min
[INFO] Finished at: 2017-11-16T21:48:02Z
[INFO] Final Memory: 168M/1668M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (surefire-it) on project ctakes-ytex-uima: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex-uima/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 1]
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (default-test) on project ctakes-regression-test: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-regression-test/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-ytex-uima
Sending e-mails to: notifications@ctakes.apache.org sean.finan@tch.harvard.edu
Sending e-mails to: notifications@ctakes.apache.org sean.finan@tch.harvard.edu
Sending e-mails to: notifications@ctakes.apache.org
Sending e-mails to: notifications@ctakes.apache.org
channel stopped
Build failed in Jenkins: cTAKES-trunk-Java-1.8 #28
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/28/display/redirect?page=changes>
Changes:
[seanfinan] Minor refactor (shorter names)
[seanfinan] Rewrite of Patient view cache
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[INFO] ------------- Scan Apache cTAKES Resources dictionary-lookup-fast-res
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res/target/sonar>
[INFO] Source paths: pom.xml
[INFO] Binary dirs: target/classes
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[INFO] Sensor CPD Block Indexer
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[INFO] ------------- Scan Apache cTAKES
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/target/sonar>
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[INFO] Sensor Zero Coverage Sensor
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[INFO] Sensor Code Colorizer Sensor
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[INFO] Sensor CPD Block Indexer
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[INFO] Calculating CPD for 1098 files
[INFO] CPD calculation finished
[INFO] Analysis report generated in 2080ms, dir size=18 MB
[INFO] Analysis reports compressed in 3659ms, zip size=7 MB
[INFO] Analysis report uploaded in 2270ms
[INFO] ANALYSIS SUCCESSFUL, you can browse https://builds.apache.org/analysis/dashboard/index/org.apache.ctakes:ctakes
[INFO] Note that you will be able to access the updated dashboard once the server has processed the submitted analysis report
[INFO] More about the report processing at https://builds.apache.org/analysis/api/ce/task?id=AV_GjHbZmqiS_xQKKaVK
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[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ...................................... SUCCESS [05:10 min]
[INFO] ctakes-gui-res ..................................... SUCCESS [ 4.204 s]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [ 2.557 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [ 7.400 s]
[INFO] Apache cTAKES utils ................................ SUCCESS [ 3.847 s]
[INFO] Apache cTAKES core ................................. FAILURE [ 4.577 s]
[INFO] ctakes-gui ......................................... SKIPPED
[INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [ 3.285 s]
[INFO] Apache cTAKES part-of-speech tagger ................ SKIPPED
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [ 3.376 s]
[INFO] Apache cTAKES chunker .............................. SKIPPED
[INFO] Apache cTAKES document preprocessor ................ SKIPPED
[INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [ 14.636 s]
[INFO] Apache cTAKES dictionary lookup .................... SKIPPED
[INFO] Apache cTAKES context dependent tokenizer .......... SKIPPED
[INFO] Apache cTAKES Resources lvg ........................ SUCCESS [ 39.973 s]
[INFO] Apache cTAKES LVG lexical tools .................... SKIPPED
[INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [ 2.474 s]
[INFO] Apache cTAKES named entity contexts ................ SKIPPED
[INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [ 4.964 s]
[INFO] Apache cTAKES Constituency Parser .................. SKIPPED
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [ 7.302 s]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [ 2.996 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [ 2.550 s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [ 3.224 s]
[INFO] Apache cTAKES dictionary lookup fast ............... SKIPPED
[INFO] Apache cTAKES Resources assertion .................. SUCCESS [ 4.184 s]
[INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [ 25.271 s]
[INFO] Apache cTAKES Dependency Parser .................... SKIPPED
[INFO] Apache cTAKES Assertion ............................ SKIPPED
[INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [ 2.379 s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SKIPPED
[INFO] Apache cTAKES Relation Extractor ................... SKIPPED
[INFO] Apache cTAKES Temporal Information Extraction ...... SKIPPED
[INFO] Apache cTAKES CoReference Resolver ................. SKIPPED
[INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [ 3.423 s]
[INFO] Apache cTAKES Drug NER ............................. SKIPPED
[INFO] Apache cTAKES Resources side-effect ................ SUCCESS [ 2.541 s]
[INFO] Apache cTAKES Side Effects ......................... SKIPPED
[INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [ 2.542 s]
[INFO] Apache cTAKES Smoking Status ....................... SKIPPED
[INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [ 2.622 s]
[INFO] Apache cTAKES Assertion's zoner .................... SKIPPED
[INFO] ctakes-examples-res ................................ SUCCESS [ 2.437 s]
[INFO] ctakes-examples .................................... SKIPPED
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [ 2.417 s]
[INFO] Apache cTAKES YTEX ................................. SKIPPED
[INFO] Apache cTAKES YTEX UIMA ............................ SKIPPED
[INFO] Apache cTAKES YTEX Web ............................. SKIPPED
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... SKIPPED
[INFO] Apache cTAKES template filler ...................... SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 09:03 min
[INFO] Finished at: 2017-11-16T20:37:29Z
[INFO] Final Memory: 107M/1622M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.4:compile (default-compile) on project ctakes-core: Compilation failure: Compilation failure:
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/JdbcCollectionReader.java>:[177,25] [unchecked] unchecked conversion
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-core/src/main/java/org/apache/ctakes/core/patient/PatientNoteCollector.java>:[37,36] error: cannot find symbol
[ERROR] symbol: method addDocument(JCas)
[ERROR] location: class PatientNoteStore
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/FilesInDirectoryCollectionReader.java>:[113,26] [deprecation] locateFile(String) in FileLocator has been deprecated
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-core/src/main/java/org/apache/ctakes/core/patient/AbstractPatientConsumer.java>:[66,77] error: cannot find symbol
[ERROR] symbol: method getPatientIds()
[ERROR] location: class PatientNoteStore
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-core/src/main/java/org/apache/ctakes/core/patient/AbstractPatientConsumer.java>:[87,55] error: cannot find symbol
[ERROR] symbol: method getPatientCas(String)
[ERROR] location: class PatientNoteStore
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/FileTreeReader.java>:[126,39] error: cannot find symbol
[ERROR] symbol: method setDocCount(String,int)
[ERROR] location: class PatientNoteStore
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/FileTreeReader.java>:[130,78] error: cannot find symbol
[ERROR] symbol: method setDocCount(String,Integer)
[ERROR] location: class PatientNoteStore
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-core/src/main/java/org/apache/ctakes/core/ae/SentenceDetector.java>:[314,30] [deprecation] train(String,ObjectStream<SentenceSample>,boolean,Dictionary,TrainingParameters) in SentenceDetectorME has been deprecated
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-core/src/main/java/org/apache/ctakes/core/util/ListIterable.java>:[34,50] [unchecked] unchecked cast
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-core
Sending e-mails to: notifications@ctakes.apache.org sean.finan@tch.harvard.edu
channel stopped
Build failed in Jenkins: cTAKES-trunk-Java-1.8 #27
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/27/display/redirect?page=changes>
Changes:
[seanfinan] MarkableHeadTreeCreator removed
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[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/sonar>
[INFO] Source paths: pom.xml, src/main/java
[INFO] Test paths: src/test/java
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
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[INFO] Sensor SurefireSensor
[INFO] parsing <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/surefire-reports>
[INFO] Sensor SurefireSensor (done) | time=0ms
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[INFO] JaCoCoSensor: JaCoCo report not found : <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco.exec>
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[INFO] JaCoCoItSensor: JaCoCo IT report not found: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco-it.exec>
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[INFO] Sensor CPD Block Indexer
[INFO] JavaCpdBlockIndexer is used for java
[INFO] Sensor CPD Block Indexer (done) | time=35ms
[INFO] ------------- Scan Apache cTAKES Resources dictionary-lookup-fast-res
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res/target/sonar>
[INFO] Source paths: pom.xml
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
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[INFO] ------------- Scan Apache cTAKES
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/target/sonar>
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[INFO] Calculating CPD for 1098 files
[INFO] CPD calculation finished
[INFO] Analysis report generated in 1346ms, dir size=18 MB
[INFO] Analysis reports compressed in 3006ms, zip size=7 MB
[INFO] Analysis report uploaded in 2136ms
[INFO] ANALYSIS SUCCESSFUL, you can browse https://builds.apache.org/analysis/dashboard/index/org.apache.ctakes:ctakes
[INFO] Note that you will be able to access the updated dashboard once the server has processed the submitted analysis report
[INFO] More about the report processing at https://builds.apache.org/analysis/api/ce/task?id=AV-_7R5MmqiS_xQKKaUw
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[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ...................................... SUCCESS [04:24 min]
[INFO] ctakes-gui-res ..................................... SUCCESS [ 4.967 s]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [ 2.985 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [ 7.791 s]
[INFO] Apache cTAKES utils ................................ SUCCESS [ 4.382 s]
[INFO] Apache cTAKES core ................................. SUCCESS [ 21.777 s]
[INFO] ctakes-gui ......................................... SUCCESS [ 16.063 s]
[INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [ 3.223 s]
[INFO] Apache cTAKES part-of-speech tagger ................ SUCCESS [ 5.071 s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [ 3.552 s]
[INFO] Apache cTAKES chunker .............................. SUCCESS [ 3.545 s]
[INFO] Apache cTAKES document preprocessor ................ SUCCESS [ 3.612 s]
[INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [ 10.889 s]
[INFO] Apache cTAKES dictionary lookup .................... SUCCESS [ 4.908 s]
[INFO] Apache cTAKES context dependent tokenizer .......... SUCCESS [ 5.784 s]
[INFO] Apache cTAKES Resources lvg ........................ SUCCESS [ 28.808 s]
[INFO] Apache cTAKES LVG lexical tools .................... SUCCESS [ 4.620 s]
[INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [ 2.996 s]
[INFO] Apache cTAKES named entity contexts ................ SUCCESS [ 4.521 s]
[INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [ 4.981 s]
[INFO] Apache cTAKES Constituency Parser .................. SUCCESS [ 3.540 s]
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [ 6.961 s]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [ 3.099 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [ 2.537 s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [ 3.342 s]
[INFO] Apache cTAKES dictionary lookup fast ............... SUCCESS [ 3.218 s]
[INFO] Apache cTAKES Resources assertion .................. SUCCESS [ 4.144 s]
[INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [ 22.613 s]
[INFO] Apache cTAKES Dependency Parser .................... SUCCESS [ 35.847 s]
[INFO] Apache cTAKES Assertion ............................ SUCCESS [ 5.859 s]
[INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [ 2.476 s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SUCCESS [ 6.460 s]
[INFO] Apache cTAKES Relation Extractor ................... SUCCESS [ 9.370 s]
[INFO] Apache cTAKES Temporal Information Extraction ...... SUCCESS [01:49 min]
[INFO] Apache cTAKES CoReference Resolver ................. SUCCESS [ 9.082 s]
[INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [ 2.883 s]
[INFO] Apache cTAKES Drug NER ............................. SUCCESS [ 6.564 s]
[INFO] Apache cTAKES Resources side-effect ................ SUCCESS [ 2.549 s]
[INFO] Apache cTAKES Side Effects ......................... SUCCESS [ 5.965 s]
[INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [ 2.554 s]
[INFO] Apache cTAKES Smoking Status ....................... SUCCESS [ 6.258 s]
[INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [ 2.503 s]
[INFO] Apache cTAKES Assertion's zoner .................... SUCCESS [ 3.008 s]
[INFO] ctakes-examples-res ................................ SUCCESS [ 2.623 s]
[INFO] ctakes-examples .................................... SUCCESS [ 8.512 s]
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [ 2.420 s]
[INFO] Apache cTAKES YTEX ................................. FAILURE [ 17.720 s]
[INFO] Apache cTAKES YTEX UIMA ............................ SKIPPED
[INFO] Apache cTAKES YTEX Web ............................. SKIPPED
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... FAILURE [ 12.232 s]
[INFO] Apache cTAKES template filler ...................... SUCCESS [ 7.349 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 13:51 min
[INFO] Finished at: 2017-11-15T13:45:47Z
[INFO] Final Memory: 139M/1553M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-antrun-plugin:1.6:run (generate-test-config) on project ctakes-ytex: An Ant BuildException has occured: The following error occurred while executing this line:
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex/scripts/build-setup.xml>:149: The following error occurred while executing this line:
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex/scripts/data/build.xml>:124: java.sql.SQLException: Database lock acquisition failure: lockFile: org.hsqldb.persist.LockFile@72d2ec59[file =/tmp/ctakes-test-hsqldb/ctakes/ctakes.lck, exists=false, locked=false, valid=false, ] method: openRAF reason: java.io.FileNotFoundException: /tmp/ctakes-test-hsqldb/ctakes/ctakes.lck (Permission denied)
[ERROR] -> [Help 1]
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (default-test) on project ctakes-regression-test: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-regression-test/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 2]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException
[ERROR] [Help 2] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-ytex
Sending e-mails to: notifications@ctakes.apache.org sean.finan@tch.harvard.edu
Sending e-mails to: notifications@ctakes.apache.org
channel stopped
Build failed in Jenkins: cTAKES-trunk-Java-1.8 #26
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/26/display/redirect?page=changes>
Changes:
[alexz] CTAKES-334: fix GramMatrixExporterImp::setBagOfWordsExporter signature
[seanfinan] CTAKES-441 : Add LabValueFinder annotator. Many thanks to the original author Kean Kaufmann.
[seanfinan] TextSpan refactor (package move). Prep for LabValueFinder
[alexz] "svn ignore IntelliJ IDEA project files - *.iml, .idea"
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[INFO] JavaCpdBlockIndexer is used for java
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[INFO] ------------- Scan Apache cTAKES Resources dictionary-lookup-fast-res
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res/target/sonar>
[INFO] Source paths: pom.xml
[INFO] Binary dirs: target/classes
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[INFO] Sensor Unit Test Results Import
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[INFO] Sensor XmlFileSensor
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[INFO] Sensor CPD Block Indexer
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[INFO] ------------- Scan Apache cTAKES
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/target/sonar>
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Sensor Lines Sensor
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[INFO] Sensor SCM Sensor
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[INFO] Sensor Coverage Report Import
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[INFO] Sensor Unit Test Results Import
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[INFO] Sensor XmlFileSensor
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[INFO] Sensor Zero Coverage Sensor
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[INFO] Sensor Code Colorizer Sensor
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[INFO] Sensor CPD Block Indexer
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[INFO] Calculating CPD for 1098 files
[INFO] CPD calculation finished
[INFO] Analysis report generated in 2089ms, dir size=18 MB
[INFO] Analysis reports compressed in 4110ms, zip size=7 MB
[INFO] Analysis report uploaded in 2519ms
[INFO] ANALYSIS SUCCESSFUL, you can browse https://builds.apache.org/analysis/dashboard/index/org.apache.ctakes:ctakes
[INFO] Note that you will be able to access the updated dashboard once the server has processed the submitted analysis report
[INFO] More about the report processing at https://builds.apache.org/analysis/api/ce/task?id=AV-9bAyomqiS_xQKKaUj
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[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ...................................... SUCCESS [06:01 min]
[INFO] ctakes-gui-res ..................................... SUCCESS [ 4.807 s]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [ 2.800 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [ 8.698 s]
[INFO] Apache cTAKES utils ................................ SUCCESS [ 4.358 s]
[INFO] Apache cTAKES core ................................. SUCCESS [ 31.254 s]
[INFO] ctakes-gui ......................................... SUCCESS [ 4.749 s]
[INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [ 3.561 s]
[INFO] Apache cTAKES part-of-speech tagger ................ SUCCESS [ 6.304 s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [ 3.529 s]
[INFO] Apache cTAKES chunker .............................. SUCCESS [ 3.998 s]
[INFO] Apache cTAKES document preprocessor ................ SUCCESS [ 4.018 s]
[INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [ 25.339 s]
[INFO] Apache cTAKES dictionary lookup .................... SUCCESS [ 5.151 s]
[INFO] Apache cTAKES context dependent tokenizer .......... SUCCESS [ 5.465 s]
[INFO] Apache cTAKES Resources lvg ........................ SUCCESS [ 53.239 s]
[INFO] Apache cTAKES LVG lexical tools .................... SUCCESS [ 8.980 s]
[INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [ 2.368 s]
[INFO] Apache cTAKES named entity contexts ................ SUCCESS [ 4.976 s]
[INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [ 5.051 s]
[INFO] Apache cTAKES Constituency Parser .................. SUCCESS [ 3.295 s]
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [ 8.606 s]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [ 3.087 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [ 2.653 s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [ 4.262 s]
[INFO] Apache cTAKES dictionary lookup fast ............... SUCCESS [ 3.646 s]
[INFO] Apache cTAKES Resources assertion .................. SUCCESS [ 4.458 s]
[INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [ 20.742 s]
[INFO] Apache cTAKES Dependency Parser .................... SUCCESS [ 50.825 s]
[INFO] Apache cTAKES Assertion ............................ SUCCESS [ 7.342 s]
[INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [ 2.427 s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SUCCESS [ 7.521 s]
[INFO] Apache cTAKES Relation Extractor ................... SUCCESS [ 11.718 s]
[INFO] Apache cTAKES Temporal Information Extraction ...... SUCCESS [02:48 min]
[INFO] Apache cTAKES CoReference Resolver ................. SUCCESS [ 10.944 s]
[INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [ 2.619 s]
[INFO] Apache cTAKES Drug NER ............................. SUCCESS [ 8.485 s]
[INFO] Apache cTAKES Resources side-effect ................ SUCCESS [ 2.695 s]
[INFO] Apache cTAKES Side Effects ......................... SUCCESS [ 7.103 s]
[INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [ 2.564 s]
[INFO] Apache cTAKES Smoking Status ....................... SUCCESS [ 7.085 s]
[INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [ 2.545 s]
[INFO] Apache cTAKES Assertion's zoner .................... SUCCESS [ 3.202 s]
[INFO] ctakes-examples-res ................................ SUCCESS [ 2.517 s]
[INFO] ctakes-examples .................................... SUCCESS [ 9.817 s]
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [ 2.485 s]
[INFO] Apache cTAKES YTEX ................................. SUCCESS [01:24 min]
[INFO] Apache cTAKES YTEX UIMA ............................ FAILURE [01:52 min]
[INFO] Apache cTAKES YTEX Web ............................. SUCCESS [01:14 min]
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... FAILURE [ 14.918 s]
[INFO] Apache cTAKES template filler ...................... SUCCESS [ 13.651 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 22:18 min
[INFO] Finished at: 2017-11-15T02:05:39Z
[INFO] Final Memory: 165M/1722M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (surefire-it) on project ctakes-ytex-uima: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex-uima/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 1]
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (default-test) on project ctakes-regression-test: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-regression-test/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-ytex-uima
Sending e-mails to: notifications@ctakes.apache.org sean.finan@tch.harvard.edu
Sending e-mails to: notifications@ctakes.apache.org alexz@apache.org
Sending e-mails to: notifications@ctakes.apache.org
channel stopped
Build failed in Jenkins: cTAKES-trunk-Java-1.8 #25
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/25/display/redirect?page=changes>
Changes:
[seanfinan] Fix for possible bug involving too many open files. Apparently Files.lines() doesn't auto-close at eos.
------------------------------------------
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[INFO] ------------- Scan Apache cTAKES dictionary lookup fast
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/sonar>
[INFO] Source paths: pom.xml, src/main/java
[INFO] Test paths: src/test/java
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 49 files indexed
[INFO] Quality profile for java: Sonar way
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=1ms
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[INFO] Configured Java source version (sonar.java.source): 8
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[INFO] Sensor CPD Block Indexer
[INFO] JavaCpdBlockIndexer is used for java
[INFO] Sensor CPD Block Indexer (done) | time=47ms
[INFO] ------------- Scan Apache cTAKES Resources dictionary-lookup-fast-res
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res/target/sonar>
[INFO] Source paths: pom.xml
[INFO] Binary dirs: target/classes
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[INFO] ------------- Scan Apache cTAKES
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/target/sonar>
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[INFO] Calculating CPD for 1096 files
[INFO] CPD calculation finished
[INFO] Analysis report generated in 2079ms, dir size=18 MB
[INFO] Analysis reports compressed in 4031ms, zip size=7 MB
[INFO] Analysis report uploaded in 2597ms
[INFO] ANALYSIS SUCCESSFUL, you can browse https://builds.apache.org/analysis/dashboard/index/org.apache.ctakes:ctakes
[INFO] Note that you will be able to access the updated dashboard once the server has processed the submitted analysis report
[INFO] More about the report processing at https://builds.apache.org/analysis/api/ce/task?id=AV-2vTD5mqiS_xQKKaUI
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[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ...................................... SUCCESS [06:02 min]
[INFO] ctakes-gui-res ..................................... SUCCESS [ 4.902 s]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [ 2.870 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [ 9.253 s]
[INFO] Apache cTAKES utils ................................ SUCCESS [ 4.444 s]
[INFO] Apache cTAKES core ................................. SUCCESS [ 25.823 s]
[INFO] ctakes-gui ......................................... SUCCESS [ 4.683 s]
[INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [ 3.720 s]
[INFO] Apache cTAKES part-of-speech tagger ................ SUCCESS [ 5.820 s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [ 3.523 s]
[INFO] Apache cTAKES chunker .............................. SUCCESS [ 4.546 s]
[INFO] Apache cTAKES document preprocessor ................ SUCCESS [ 4.251 s]
[INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [ 21.661 s]
[INFO] Apache cTAKES dictionary lookup .................... SUCCESS [ 4.962 s]
[INFO] Apache cTAKES context dependent tokenizer .......... SUCCESS [ 5.578 s]
[INFO] Apache cTAKES Resources lvg ........................ SUCCESS [ 39.998 s]
[INFO] Apache cTAKES LVG lexical tools .................... SUCCESS [ 6.122 s]
[INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [ 2.766 s]
[INFO] Apache cTAKES named entity contexts ................ SUCCESS [ 5.052 s]
[INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [ 4.918 s]
[INFO] Apache cTAKES Constituency Parser .................. SUCCESS [ 3.690 s]
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [ 8.434 s]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [ 3.166 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [ 2.711 s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [ 4.347 s]
[INFO] Apache cTAKES dictionary lookup fast ............... SUCCESS [ 3.592 s]
[INFO] Apache cTAKES Resources assertion .................. SUCCESS [ 4.654 s]
[INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [ 22.185 s]
[INFO] Apache cTAKES Dependency Parser .................... SUCCESS [ 44.957 s]
[INFO] Apache cTAKES Assertion ............................ SUCCESS [ 7.023 s]
[INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [ 2.558 s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SUCCESS [ 8.215 s]
[INFO] Apache cTAKES Relation Extractor ................... SUCCESS [ 11.717 s]
[INFO] Apache cTAKES Temporal Information Extraction ...... SUCCESS [02:11 min]
[INFO] Apache cTAKES CoReference Resolver ................. SUCCESS [ 10.652 s]
[INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [ 2.805 s]
[INFO] Apache cTAKES Drug NER ............................. SUCCESS [ 7.343 s]
[INFO] Apache cTAKES Resources side-effect ................ SUCCESS [ 2.782 s]
[INFO] Apache cTAKES Side Effects ......................... SUCCESS [ 7.336 s]
[INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [ 2.770 s]
[INFO] Apache cTAKES Smoking Status ....................... SUCCESS [ 6.901 s]
[INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [ 2.823 s]
[INFO] Apache cTAKES Assertion's zoner .................... SUCCESS [ 3.306 s]
[INFO] ctakes-examples-res ................................ SUCCESS [ 2.638 s]
[INFO] ctakes-examples .................................... SUCCESS [ 8.822 s]
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [ 2.834 s]
[INFO] Apache cTAKES YTEX ................................. FAILURE [01:20 min]
[INFO] Apache cTAKES YTEX UIMA ............................ SKIPPED
[INFO] Apache cTAKES YTEX Web ............................. SKIPPED
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... FAILURE [ 13.361 s]
[INFO] Apache cTAKES template filler ...................... SUCCESS [ 9.524 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 17:50 min
[INFO] Finished at: 2017-11-13T18:56:54Z
[INFO] Final Memory: 148M/1645M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (surefire-it) on project ctakes-ytex: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 1]
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (default-test) on project ctakes-regression-test: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-regression-test/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-ytex
Sending e-mails to: notifications@ctakes.apache.org
Sending e-mails to: notifications@ctakes.apache.org
channel stopped
Build failed in Jenkins: cTAKES-trunk-Java-1.8 #24
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/24/display/redirect?page=changes>
Changes:
[tmill] WIP: Fixes compiler error but coref eval still not working.
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[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/sonar>
[INFO] Source paths: pom.xml, src/main/java
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[INFO] parsing <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/surefire-reports>
[INFO] Sensor SurefireSensor (done) | time=15ms
[INFO] Sensor JaCoCoSensor
[INFO] JaCoCoSensor: JaCoCo report not found : <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco.exec>
[INFO] Sensor JaCoCoSensor (done) | time=1ms
[INFO] Sensor JaCoCoItSensor
[INFO] JaCoCoItSensor: JaCoCo IT report not found: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco-it.exec>
[INFO] Sensor JaCoCoItSensor (done) | time=0ms
[INFO] Sensor JaCoCoOverallSensor
[INFO] Sensor JaCoCoOverallSensor (done) | time=1ms
[INFO] Sensor XmlFileSensor
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[INFO] Sensor Zero Coverage Sensor
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[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] JavaCpdBlockIndexer is used for java
[INFO] Sensor CPD Block Indexer (done) | time=37ms
[INFO] ------------- Scan Apache cTAKES Resources dictionary-lookup-fast-res
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res/target/sonar>
[INFO] Source paths: pom.xml
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 0 files indexed
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] ------------- Scan Apache cTAKES
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/target/sonar>
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=1ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] Calculating CPD for 1096 files
[INFO] CPD calculation finished
[INFO] Analysis report generated in 1835ms, dir size=18 MB
[INFO] Analysis reports compressed in 3278ms, zip size=7 MB
[INFO] Analysis report uploaded in 2152ms
[INFO] ANALYSIS SUCCESSFUL, you can browse https://builds.apache.org/analysis/dashboard/index/org.apache.ctakes:ctakes
[INFO] Note that you will be able to access the updated dashboard once the server has processed the submitted analysis report
[INFO] More about the report processing at https://builds.apache.org/analysis/api/ce/task?id=AV-iGFfRmqiS_xQKKaSs
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[INFO] ------------------------------------------------------------------------
[JENKINS] Archiving disabled[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ...................................... SUCCESS [05:08 min]
[INFO] ctakes-gui-res ..................................... SUCCESS [ 4.471 s]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [ 2.721 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [ 8.203 s]
[INFO] Apache cTAKES utils ................................ SUCCESS [ 4.717 s]
[INFO] Apache cTAKES core ................................. SUCCESS [ 26.122 s]
[INFO] ctakes-gui ......................................... SUCCESS [ 4.629 s]
[INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [ 3.243 s]
[INFO] Apache cTAKES part-of-speech tagger ................ SUCCESS [ 5.457 s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [ 3.364 s]
[INFO] Apache cTAKES chunker .............................. SUCCESS [ 3.631 s]
[INFO] Apache cTAKES document preprocessor ................ SUCCESS [ 5.620 s]
[INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [ 12.226 s]
[INFO] Apache cTAKES dictionary lookup .................... SUCCESS [ 4.478 s]
[INFO] Apache cTAKES context dependent tokenizer .......... SUCCESS [ 5.039 s]
[INFO] Apache cTAKES Resources lvg ........................ SUCCESS [ 32.477 s]
[INFO] Apache cTAKES LVG lexical tools .................... SUCCESS [ 9.344 s]
[INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [ 2.403 s]
[INFO] Apache cTAKES named entity contexts ................ SUCCESS [ 5.133 s]
[INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [ 4.549 s]
[INFO] Apache cTAKES Constituency Parser .................. SUCCESS [ 3.300 s]
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [ 10.436 s]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [ 2.973 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [ 2.504 s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [ 3.466 s]
[INFO] Apache cTAKES dictionary lookup fast ............... SUCCESS [ 3.409 s]
[INFO] Apache cTAKES Resources assertion .................. SUCCESS [ 4.277 s]
[INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [ 23.178 s]
[INFO] Apache cTAKES Dependency Parser .................... SUCCESS [ 46.254 s]
[INFO] Apache cTAKES Assertion ............................ SUCCESS [ 6.625 s]
[INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [ 2.375 s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SUCCESS [ 6.889 s]
[INFO] Apache cTAKES Relation Extractor ................... SUCCESS [ 10.744 s]
[INFO] Apache cTAKES Temporal Information Extraction ...... SUCCESS [02:14 min]
[INFO] Apache cTAKES CoReference Resolver ................. SUCCESS [ 9.636 s]
[INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [ 2.529 s]
[INFO] Apache cTAKES Drug NER ............................. SUCCESS [ 6.871 s]
[INFO] Apache cTAKES Resources side-effect ................ SUCCESS [ 2.558 s]
[INFO] Apache cTAKES Side Effects ......................... SUCCESS [ 6.318 s]
[INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [ 2.627 s]
[INFO] Apache cTAKES Smoking Status ....................... SUCCESS [ 6.299 s]
[INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [ 2.523 s]
[INFO] Apache cTAKES Assertion's zoner .................... SUCCESS [ 3.032 s]
[INFO] ctakes-examples-res ................................ SUCCESS [ 2.448 s]
[INFO] ctakes-examples .................................... SUCCESS [ 8.779 s]
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [ 2.714 s]
[INFO] Apache cTAKES YTEX ................................. FAILURE [01:15 min]
[INFO] Apache cTAKES YTEX UIMA ............................ SKIPPED
[INFO] Apache cTAKES YTEX Web ............................. SKIPPED
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... FAILURE [ 11.811 s]
[INFO] Apache cTAKES template filler ...................... SUCCESS [ 7.584 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 16:25 min
[INFO] Finished at: 2017-11-09T18:44:26Z
[INFO] Final Memory: 160M/1672M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (surefire-it) on project ctakes-ytex: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 1]
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (default-test) on project ctakes-regression-test: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-regression-test/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-ytex
Sending e-mails to: notifications@ctakes.apache.org
Sending e-mails to: notifications@ctakes.apache.org timothy.miller@childrens.harvard.edu
Sending e-mails to: notifications@ctakes.apache.org
channel stopped
Build failed in Jenkins: cTAKES-trunk-Java-1.8 #23
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/23/display/redirect?page=changes>
Changes:
[seanfinan] FileTreeReader : Allow specification of a single file
------------------------------------------
[...truncated 1.16 MB...]
[INFO] Index files
[INFO] 49 files indexed
[INFO] Quality profile for java: Sonar way
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor JavaSquidSensor
[INFO] Configured Java source version (sonar.java.source): 8
[INFO] JavaClasspath initialization
[INFO] JavaClasspath initialization (done) | time=1ms
[INFO] JavaTestClasspath initialization
[INFO] JavaTestClasspath initialization (done) | time=0ms
[INFO] Java Main Files AST scan
[INFO] 46 source files to be analyzed
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[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor SurefireSensor
[INFO] parsing <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/surefire-reports>
[INFO] Sensor SurefireSensor (done) | time=0ms
[INFO] Sensor JaCoCoSensor
[INFO] JaCoCoSensor: JaCoCo report not found : <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco.exec>
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[INFO] Sensor JaCoCoItSensor
[INFO] JaCoCoItSensor: JaCoCo IT report not found: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco-it.exec>
[INFO] Sensor JaCoCoItSensor (done) | time=0ms
[INFO] Sensor JaCoCoOverallSensor
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[INFO] Sensor XmlFileSensor
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[INFO] Sensor Code Colorizer Sensor
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[INFO] Sensor CPD Block Indexer
[INFO] JavaCpdBlockIndexer is used for java
[INFO] Sensor CPD Block Indexer (done) | time=40ms
[INFO] ------------- Scan Apache cTAKES Resources dictionary-lookup-fast-res
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res/target/sonar>
[INFO] Source paths: pom.xml
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 0 files indexed
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=1ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] ------------- Scan Apache cTAKES
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/target/sonar>
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] Calculating CPD for 1096 files
[INFO] CPD calculation finished
[INFO] Analysis report generated in 1590ms, dir size=18 MB
[INFO] Analysis reports compressed in 3340ms, zip size=7 MB
[INFO] Analysis report uploaded in 2553ms
[INFO] ANALYSIS SUCCESSFUL, you can browse https://builds.apache.org/analysis/dashboard/index/org.apache.ctakes:ctakes
[INFO] Note that you will be able to access the updated dashboard once the server has processed the submitted analysis report
[INFO] More about the report processing at https://builds.apache.org/analysis/api/ce/task?id=AV-hqw9kmqiS_xQKKaSq
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[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ...................................... SUCCESS [05:21 min]
[INFO] ctakes-gui-res ..................................... SUCCESS [ 4.554 s]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [ 2.910 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [ 9.007 s]
[INFO] Apache cTAKES utils ................................ SUCCESS [ 4.831 s]
[INFO] Apache cTAKES core ................................. SUCCESS [ 25.689 s]
[INFO] ctakes-gui ......................................... SUCCESS [ 4.901 s]
[INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [ 3.282 s]
[INFO] Apache cTAKES part-of-speech tagger ................ SUCCESS [ 5.974 s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [ 3.360 s]
[INFO] Apache cTAKES chunker .............................. SUCCESS [ 3.821 s]
[INFO] Apache cTAKES document preprocessor ................ SUCCESS [ 3.874 s]
[INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [ 11.570 s]
[INFO] Apache cTAKES dictionary lookup .................... SUCCESS [ 5.395 s]
[INFO] Apache cTAKES context dependent tokenizer .......... SUCCESS [ 5.348 s]
[INFO] Apache cTAKES Resources lvg ........................ SUCCESS [ 38.442 s]
[INFO] Apache cTAKES LVG lexical tools .................... SUCCESS [ 4.921 s]
[INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [ 2.407 s]
[INFO] Apache cTAKES named entity contexts ................ SUCCESS [ 4.985 s]
[INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [ 4.840 s]
[INFO] Apache cTAKES Constituency Parser .................. SUCCESS [ 3.446 s]
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [ 7.310 s]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [ 2.947 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [ 2.674 s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [ 3.246 s]
[INFO] Apache cTAKES dictionary lookup fast ............... SUCCESS [ 3.562 s]
[INFO] Apache cTAKES Resources assertion .................. SUCCESS [ 4.300 s]
[INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [ 25.709 s]
[INFO] Apache cTAKES Dependency Parser .................... SUCCESS [ 49.406 s]
[INFO] Apache cTAKES Assertion ............................ SUCCESS [ 7.214 s]
[INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [ 2.500 s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SUCCESS [ 7.085 s]
[INFO] Apache cTAKES Relation Extractor ................... SUCCESS [ 11.556 s]
[INFO] Apache cTAKES Temporal Information Extraction ...... SUCCESS [02:25 min]
[INFO] Apache cTAKES CoReference Resolver ................. FAILURE [ 7.938 s]
[INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [ 2.555 s]
[INFO] Apache cTAKES Drug NER ............................. SUCCESS [ 7.222 s]
[INFO] Apache cTAKES Resources side-effect ................ SUCCESS [ 2.488 s]
[INFO] Apache cTAKES Side Effects ......................... SUCCESS [ 6.434 s]
[INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [ 2.575 s]
[INFO] Apache cTAKES Smoking Status ....................... SUCCESS [ 6.307 s]
[INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [ 2.579 s]
[INFO] Apache cTAKES Assertion's zoner .................... SUCCESS [ 3.135 s]
[INFO] ctakes-examples-res ................................ SUCCESS [ 2.707 s]
[INFO] ctakes-examples .................................... SKIPPED
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [ 2.426 s]
[INFO] Apache cTAKES YTEX ................................. FAILURE [01:20 min]
[INFO] Apache cTAKES YTEX UIMA ............................ SKIPPED
[INFO] Apache cTAKES YTEX Web ............................. SKIPPED
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... FAILURE [ 11.913 s]
[INFO] Apache cTAKES template filler ...................... SUCCESS [ 8.130 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 16:49 min
[INFO] Finished at: 2017-11-09T16:45:00Z
[INFO] Final Memory: 157M/1694M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.4:compile (default-compile) on project ctakes-coreference: Compilation failure: Compilation failure:
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/eval/EvaluationOfEventCoreference.java>:[1030,53] error: cannot find symbol
[ERROR] symbol: method getPreviousPatientName()
[ERROR] location: variable notes of type PatientNoteStore
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/eval/EvaluationOfEventCoreference.java>:[1076,53] error: cannot find symbol
[ERROR] -> [Help 1]
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (surefire-it) on project ctakes-ytex: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 1]
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (default-test) on project ctakes-regression-test: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-regression-test/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-coreference
Sending e-mails to: notifications@ctakes.apache.org
Sending e-mails to: notifications@ctakes.apache.org timothy.miller@childrens.harvard.edu
Sending e-mails to: notifications@ctakes.apache.org
channel stopped
Build failed in Jenkins: cTAKES-trunk-Java-1.8 #22
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/22/display/redirect?page=changes>
Changes:
[tmill] Removed unused and non-existent type.
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[INFO] Sensor XmlFileSensor
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[INFO] Sensor Zero Coverage Sensor
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[INFO] Sensor CPD Block Indexer
[INFO] JavaCpdBlockIndexer is used for java
[INFO] Sensor CPD Block Indexer (done) | time=37ms
[INFO] ------------- Scan Apache cTAKES Resources dictionary-lookup-fast-res
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res/target/sonar>
[INFO] Source paths: pom.xml
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
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[INFO] Sensor Unit Test Results Import
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[INFO] Sensor XmlFileSensor
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[INFO] Sensor Zero Coverage Sensor
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[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] ------------- Scan Apache cTAKES
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/target/sonar>
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Sensor Lines Sensor
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[INFO] Sensor Coverage Report Import
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[INFO] Sensor Unit Test Results Import
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[INFO] Sensor XmlFileSensor
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[INFO] Calculating CPD for 1096 files
[INFO] CPD calculation finished
[INFO] Analysis report generated in 1568ms, dir size=18 MB
[INFO] Analysis reports compressed in 3033ms, zip size=7 MB
[INFO] Analysis report uploaded in 2259ms
[INFO] ANALYSIS SUCCESSFUL, you can browse https://builds.apache.org/analysis/dashboard/index/org.apache.ctakes:ctakes
[INFO] Note that you will be able to access the updated dashboard once the server has processed the submitted analysis report
[INFO] More about the report processing at https://builds.apache.org/analysis/api/ce/task?id=AV-cuoVqYke4JYq6HJrf
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[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ...................................... SUCCESS [04:44 min]
[INFO] ctakes-gui-res ..................................... SUCCESS [ 4.632 s]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [ 2.685 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [ 7.318 s]
[INFO] Apache cTAKES utils ................................ SUCCESS [ 3.505 s]
[INFO] Apache cTAKES core ................................. SUCCESS [ 25.343 s]
[INFO] ctakes-gui ......................................... SUCCESS [ 18.437 s]
[INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [ 3.260 s]
[INFO] Apache cTAKES part-of-speech tagger ................ SUCCESS [ 5.351 s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [ 3.394 s]
[INFO] Apache cTAKES chunker .............................. SUCCESS [ 3.597 s]
[INFO] Apache cTAKES document preprocessor ................ SUCCESS [ 3.852 s]
[INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [ 10.113 s]
[INFO] Apache cTAKES dictionary lookup .................... SUCCESS [ 5.299 s]
[INFO] Apache cTAKES context dependent tokenizer .......... SUCCESS [ 6.024 s]
[INFO] Apache cTAKES Resources lvg ........................ SUCCESS [ 29.724 s]
[INFO] Apache cTAKES LVG lexical tools .................... SUCCESS [ 5.171 s]
[INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [ 2.531 s]
[INFO] Apache cTAKES named entity contexts ................ SUCCESS [ 4.816 s]
[INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [ 4.932 s]
[INFO] Apache cTAKES Constituency Parser .................. SUCCESS [ 3.858 s]
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [ 6.970 s]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [ 3.168 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [ 2.727 s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [ 3.748 s]
[INFO] Apache cTAKES dictionary lookup fast ............... SUCCESS [ 3.633 s]
[INFO] Apache cTAKES Resources assertion .................. SUCCESS [ 4.319 s]
[INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [ 25.597 s]
[INFO] Apache cTAKES Dependency Parser .................... SUCCESS [ 43.597 s]
[INFO] Apache cTAKES Assertion ............................ SUCCESS [ 6.545 s]
[INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [ 2.554 s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SUCCESS [ 6.948 s]
[INFO] Apache cTAKES Relation Extractor ................... SUCCESS [ 10.235 s]
[INFO] Apache cTAKES Temporal Information Extraction ...... SUCCESS [02:01 min]
[INFO] Apache cTAKES CoReference Resolver ................. FAILURE [ 6.965 s]
[INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [ 2.903 s]
[INFO] Apache cTAKES Drug NER ............................. SUCCESS [ 7.306 s]
[INFO] Apache cTAKES Resources side-effect ................ SUCCESS [ 2.787 s]
[INFO] Apache cTAKES Side Effects ......................... SUCCESS [ 6.383 s]
[INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [ 2.652 s]
[INFO] Apache cTAKES Smoking Status ....................... SUCCESS [ 6.642 s]
[INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [ 2.760 s]
[INFO] Apache cTAKES Assertion's zoner .................... SUCCESS [ 3.110 s]
[INFO] ctakes-examples-res ................................ SUCCESS [ 2.572 s]
[INFO] ctakes-examples .................................... SKIPPED
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [ 2.533 s]
[INFO] Apache cTAKES YTEX ................................. FAILURE [01:10 min]
[INFO] Apache cTAKES YTEX UIMA ............................ SKIPPED
[INFO] Apache cTAKES YTEX Web ............................. SKIPPED
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... FAILURE [ 11.214 s]
[INFO] Apache cTAKES template filler ...................... SUCCESS [ 7.421 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 15:31 min
[INFO] Finished at: 2017-11-08T17:43:51Z
[INFO] Final Memory: 153M/1690M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.4:compile (default-compile) on project ctakes-coreference: Compilation failure: Compilation failure:
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/eval/EvaluationOfEventCoreference.java>:[1030,53] error: cannot find symbol
[ERROR] symbol: method getPreviousPatientName()
[ERROR] location: variable notes of type PatientNoteStore
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/eval/EvaluationOfEventCoreference.java>:[1076,53] error: cannot find symbol
[ERROR] -> [Help 1]
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (surefire-it) on project ctakes-ytex: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 1]
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (default-test) on project ctakes-regression-test: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-regression-test/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-coreference
Sending e-mails to: notifications@ctakes.apache.org
Sending e-mails to: notifications@ctakes.apache.org timothy.miller@childrens.harvard.edu
Sending e-mails to: notifications@ctakes.apache.org
channel stopped
Build failed in Jenkins: cTAKES-trunk-Java-1.8 #21
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/21/display/redirect?page=changes>
Changes:
[tmill] New patient collector model working for coreference evaluation.
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[INFO] Sensor JavaSquidSensor
[INFO] Configured Java source version (sonar.java.source): 8
[INFO] JavaClasspath initialization
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[INFO] JavaTestClasspath initialization
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[INFO] Sensor SurefireSensor
[INFO] parsing <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/surefire-reports>
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[INFO] Sensor JaCoCoSensor
[INFO] JaCoCoSensor: JaCoCo report not found : <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco.exec>
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[INFO] Sensor JaCoCoItSensor
[INFO] JaCoCoItSensor: JaCoCo IT report not found: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco-it.exec>
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[INFO] Sensor JaCoCoOverallSensor
[INFO] Sensor JaCoCoOverallSensor (done) | time=0ms
[INFO] Sensor XmlFileSensor
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[INFO] ------------- Scan Apache cTAKES Resources dictionary-lookup-fast-res
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res/target/sonar>
[INFO] Source paths: pom.xml
[INFO] Binary dirs: target/classes
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[INFO] Index files
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[INFO] Sensor CPD Block Indexer
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[INFO] ------------- Scan Apache cTAKES
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/target/sonar>
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[INFO] Sensor XmlFileSensor
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[INFO] Sensor Zero Coverage Sensor
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[INFO] Sensor CPD Block Indexer
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[INFO] Calculating CPD for 1096 files
[INFO] CPD calculation finished
[INFO] Analysis report generated in 1697ms, dir size=18 MB
[INFO] Analysis reports compressed in 2989ms, zip size=7 MB
[INFO] Analysis report uploaded in 2214ms
[INFO] ANALYSIS SUCCESSFUL, you can browse https://builds.apache.org/analysis/dashboard/index/org.apache.ctakes:ctakes
[INFO] Note that you will be able to access the updated dashboard once the server has processed the submitted analysis report
[INFO] More about the report processing at https://builds.apache.org/analysis/api/ce/task?id=AV-ci-2FYke4JYq6HJrb
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[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ...................................... SUCCESS [04:43 min]
[INFO] ctakes-gui-res ..................................... SUCCESS [ 4.372 s]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [ 2.807 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [ 10.562 s]
[INFO] Apache cTAKES utils ................................ SUCCESS [ 3.684 s]
[INFO] Apache cTAKES core ................................. SUCCESS [ 22.170 s]
[INFO] ctakes-gui ......................................... SUCCESS [ 4.346 s]
[INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [ 3.019 s]
[INFO] Apache cTAKES part-of-speech tagger ................ SUCCESS [ 4.742 s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [ 3.090 s]
[INFO] Apache cTAKES chunker .............................. SUCCESS [ 3.515 s]
[INFO] Apache cTAKES document preprocessor ................ SUCCESS [ 3.849 s]
[INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [ 10.583 s]
[INFO] Apache cTAKES dictionary lookup .................... SUCCESS [ 4.075 s]
[INFO] Apache cTAKES context dependent tokenizer .......... SUCCESS [ 4.675 s]
[INFO] Apache cTAKES Resources lvg ........................ SUCCESS [ 43.401 s]
[INFO] Apache cTAKES LVG lexical tools .................... SUCCESS [ 6.554 s]
[INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [ 2.525 s]
[INFO] Apache cTAKES named entity contexts ................ SUCCESS [ 4.959 s]
[INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [ 5.488 s]
[INFO] Apache cTAKES Constituency Parser .................. SUCCESS [ 3.411 s]
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [ 7.535 s]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [ 3.209 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [ 3.319 s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [ 4.428 s]
[INFO] Apache cTAKES dictionary lookup fast ............... SUCCESS [ 4.015 s]
[INFO] Apache cTAKES Resources assertion .................. SUCCESS [ 4.471 s]
[INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [ 39.864 s]
[INFO] Apache cTAKES Dependency Parser .................... SUCCESS [ 37.335 s]
[INFO] Apache cTAKES Assertion ............................ SUCCESS [ 7.280 s]
[INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [ 2.517 s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SUCCESS [ 6.696 s]
[INFO] Apache cTAKES Relation Extractor ................... SUCCESS [ 10.510 s]
[INFO] Apache cTAKES Temporal Information Extraction ...... SUCCESS [02:31 min]
[INFO] Apache cTAKES CoReference Resolver ................. FAILURE [ 26.652 s]
[INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [ 29.686 s]
[INFO] Apache cTAKES Drug NER ............................. SUCCESS [ 28.969 s]
[INFO] Apache cTAKES Resources side-effect ................ SUCCESS [ 2.600 s]
[INFO] Apache cTAKES Side Effects ......................... SUCCESS [ 6.259 s]
[INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [ 2.692 s]
[INFO] Apache cTAKES Smoking Status ....................... SUCCESS [ 6.505 s]
[INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [ 14.870 s]
[INFO] Apache cTAKES Assertion's zoner .................... SUCCESS [ 15.175 s]
[INFO] ctakes-examples-res ................................ SUCCESS [ 2.489 s]
[INFO] ctakes-examples .................................... SKIPPED
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [ 2.634 s]
[INFO] Apache cTAKES YTEX ................................. FAILURE [01:23 min]
[INFO] Apache cTAKES YTEX UIMA ............................ SKIPPED
[INFO] Apache cTAKES YTEX Web ............................. SKIPPED
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... FAILURE [ 23.471 s]
[INFO] Apache cTAKES template filler ...................... SUCCESS [ 18.148 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 19:59 min
[INFO] Finished at: 2017-11-08T16:53:30Z
[INFO] Final Memory: 153M/1663M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.4:compile (default-compile) on project ctakes-coreference: Compilation failure: Compilation failure:
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/ae/features/cluster/MentionClusterUMLSFeatureExtractor.java>:[14,41] error: cannot find symbol
[ERROR] symbol: class HashableMarkable
[ERROR] location: package org.apache.ctakes.coreference.util
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/eval/EvaluationOfEventCoreference.java>:[1030,53] error: cannot find symbol
[ERROR] symbol: method getPreviousPatientName()
[ERROR] location: variable notes of type PatientNoteStore
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/eval/EvaluationOfEventCoreference.java>:[1076,53] error: cannot find symbol
[ERROR] -> [Help 1]
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (surefire-it) on project ctakes-ytex: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 1]
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (default-test) on project ctakes-regression-test: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-regression-test/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-coreference
Sending e-mails to: notifications@ctakes.apache.org
Sending e-mails to: notifications@ctakes.apache.org timothy.miller@childrens.harvard.edu
Sending e-mails to: notifications@ctakes.apache.org
channel stopped
Build failed in Jenkins: cTAKES-trunk-Java-1.8 #20
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/20/display/redirect?page=changes>
Changes:
[seanfinan] Add logging to common temporal engines
[seanfinan] Ignore empty lines in Bsv custom dictionaries
[seanfinan] Core collection reader updates (refactor)
[seanfinan] Core Cas consumer updates, mostly for HtmlWriter
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[INFO] Test paths: src/test/java
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[INFO] Sensor SurefireSensor
[INFO] parsing <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/surefire-reports>
[INFO] Sensor SurefireSensor (done) | time=0ms
[INFO] Sensor JaCoCoSensor
[INFO] JaCoCoSensor: JaCoCo report not found : <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco.exec>
[INFO] Sensor JaCoCoSensor (done) | time=1ms
[INFO] Sensor JaCoCoItSensor
[INFO] JaCoCoItSensor: JaCoCo IT report not found: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco-it.exec>
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[INFO] Sensor CPD Block Indexer
[INFO] JavaCpdBlockIndexer is used for java
[INFO] Sensor CPD Block Indexer (done) | time=38ms
[INFO] ------------- Scan Apache cTAKES Resources dictionary-lookup-fast-res
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res/target/sonar>
[INFO] Source paths: pom.xml
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
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[INFO] Sensor Unit Test Results Import
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[INFO] Sensor XmlFileSensor
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[INFO] Sensor Zero Coverage Sensor
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[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] ------------- Scan Apache cTAKES
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/target/sonar>
[INFO] Source encoding: UTF-8, default locale: en_US
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[INFO] Sensor CPD Block Indexer
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[INFO] Calculating CPD for 1097 files
[INFO] CPD calculation finished
[INFO] Analysis report generated in 1546ms, dir size=18 MB
[INFO] Analysis reports compressed in 3052ms, zip size=7 MB
[INFO] Analysis report uploaded in 2222ms
[INFO] ANALYSIS SUCCESSFUL, you can browse https://builds.apache.org/analysis/dashboard/index/org.apache.ctakes:ctakes
[INFO] Note that you will be able to access the updated dashboard once the server has processed the submitted analysis report
[INFO] More about the report processing at https://builds.apache.org/analysis/api/ce/task?id=AV-cTlcuYke4JYq6HJrZ
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[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ...................................... SUCCESS [04:50 min]
[INFO] ctakes-gui-res ..................................... SUCCESS [ 4.959 s]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [ 2.756 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [ 8.620 s]
[INFO] Apache cTAKES utils ................................ SUCCESS [ 4.068 s]
[INFO] Apache cTAKES core ................................. SUCCESS [ 38.324 s]
[INFO] ctakes-gui ......................................... SUCCESS [ 4.537 s]
[INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [ 3.386 s]
[INFO] Apache cTAKES part-of-speech tagger ................ SUCCESS [ 5.554 s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [ 3.304 s]
[INFO] Apache cTAKES chunker .............................. SUCCESS [ 3.688 s]
[INFO] Apache cTAKES document preprocessor ................ SUCCESS [ 4.293 s]
[INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [ 18.802 s]
[INFO] Apache cTAKES dictionary lookup .................... SUCCESS [ 4.451 s]
[INFO] Apache cTAKES context dependent tokenizer .......... SUCCESS [ 5.028 s]
[INFO] Apache cTAKES Resources lvg ........................ SUCCESS [ 34.691 s]
[INFO] Apache cTAKES LVG lexical tools .................... SUCCESS [ 6.884 s]
[INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [ 2.651 s]
[INFO] Apache cTAKES named entity contexts ................ SUCCESS [ 4.523 s]
[INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [ 5.112 s]
[INFO] Apache cTAKES Constituency Parser .................. SUCCESS [ 3.388 s]
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [ 6.863 s]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [ 3.246 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [ 2.654 s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [ 3.481 s]
[INFO] Apache cTAKES dictionary lookup fast ............... SUCCESS [ 3.438 s]
[INFO] Apache cTAKES Resources assertion .................. SUCCESS [ 4.257 s]
[INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [ 23.825 s]
[INFO] Apache cTAKES Dependency Parser .................... SUCCESS [ 42.759 s]
[INFO] Apache cTAKES Assertion ............................ SUCCESS [ 6.197 s]
[INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [ 2.533 s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SUCCESS [ 20.036 s]
[INFO] Apache cTAKES Relation Extractor ................... SUCCESS [ 9.982 s]
[INFO] Apache cTAKES Temporal Information Extraction ...... SUCCESS [02:02 min]
[INFO] Apache cTAKES CoReference Resolver ................. SUCCESS [ 9.277 s]
[INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [ 17.900 s]
[INFO] Apache cTAKES Drug NER ............................. SUCCESS [ 6.957 s]
[INFO] Apache cTAKES Resources side-effect ................ SUCCESS [ 2.626 s]
[INFO] Apache cTAKES Side Effects ......................... SUCCESS [ 6.790 s]
[INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [ 2.929 s]
[INFO] Apache cTAKES Smoking Status ....................... SUCCESS [ 6.160 s]
[INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [ 2.717 s]
[INFO] Apache cTAKES Assertion's zoner .................... SUCCESS [ 3.351 s]
[INFO] ctakes-examples-res ................................ SUCCESS [ 2.654 s]
[INFO] ctakes-examples .................................... SUCCESS [ 8.319 s]
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [ 2.605 s]
[INFO] Apache cTAKES YTEX ................................. FAILURE [01:10 min]
[INFO] Apache cTAKES YTEX UIMA ............................ SKIPPED
[INFO] Apache cTAKES YTEX Web ............................. SKIPPED
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... FAILURE [ 11.248 s]
[INFO] Apache cTAKES template filler ...................... SUCCESS [ 7.444 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 16:32 min
[INFO] Finished at: 2017-11-08T15:45:41Z
[INFO] Final Memory: 157M/1656M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (surefire-it) on project ctakes-ytex: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 1]
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (default-test) on project ctakes-regression-test: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-regression-test/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-ytex
Sending e-mails to: notifications@ctakes.apache.org sean.finan@tch.harvard.edu
Sending e-mails to: notifications@ctakes.apache.org
Sending e-mails to: notifications@ctakes.apache.org
channel stopped