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Posted to dev@ctakes.apache.org by "Finan, Sean" <Se...@childrens.harvard.edu> on 2017/09/22 21:47:23 UTC

RE: source for .jar's in resources folder [EXTERNAL]

Hi Alexz,

If I understand your question and comment ...
Those models are not 3rd party jars.  They are part of ctakes, distributed with and for it.  They are machine learning models that have been developed using expertly-written gold annotations on clinical documents.  They are updated with version releases just like code.

Does that answer your question?


-----Original Message-----
From: Alexandru Zbarcea [mailto:zbarcea.a@gmail.com] 
Sent: Friday, September 22, 2017 4:46 PM
To: Apache cTAKES Dev
Subject: source for .jar's in resources folder [EXTERNAL]

Hi,

Is there any documentation about how the following resources (*.jar) are generated or come from:
./ctakes-temporal-res/src/main/resources/org/apache/
ctakes/temporal/ae/eventevent/model.jar
./ctakes-temporal-res/src/main/resources/org/apache/ctakes/temporal/ae/
contextualmodality/model.jar
./ctakes-temporal-res/src/main/resources/org/apache/
ctakes/temporal/ae/salience/model.jar
./ctakes-temporal-res/src/main/resources/org/apache/ctakes/temporal/ae/
eventannotator/model.jar
./ctakes-temporal-res/src/main/resources/org/apache/
ctakes/temporal/ae/doctimerel/model.jar
./ctakes-temporal-res/src/main/resources/org/apache/
ctakes/temporal/ae/eventtime/model.jar
./ctakes-temporal-res/src/main/resources/org/apache/ctakes/temporal/ae/
timeannotator/model.jar
./ctakes-pos-tagger-res/src/main/resources/org/apache/
ctakes/postagger/models/clearnlp/mayo-en-pos-1.3.0.jar
./ctakes-coreference-res/src/main/resources/org/apache/
ctakes/coreference/models/mention-cluster/model.jar
./ctakes-core-res/src/main/resources/org/apache/ctakes/
core/sentdetect/model.jar
./ctakes-assertion-res/src/main/resources/org/apache/
ctakes/assertion/models/subject/model.jar
./ctakes-assertion-res/src/main/resources/org/apache/
ctakes/assertion/models/historyOf/model.jar
./ctakes-assertion-res/src/main/resources/org/apache/
ctakes/assertion/models/uncertainty/model.jar
./ctakes-assertion-res/src/main/resources/org/apache/
ctakes/assertion/models/conditional/model.jar
./ctakes-assertion-res/src/main/resources/org/apache/
ctakes/assertion/models/polarity/sharpi2b2mipacqnegex/model.jar
./ctakes-assertion-res/src/main/resources/org/apache/
ctakes/assertion/models/generic/model.jar
./ctakes-dependency-parser-res/src/main/resources/org/
apache/ctakes/dependency/parser/models/lemmatizer/dictionary-1.3.1.jar
./ctakes-dependency-parser-res/src/main/resources/org/
apache/ctakes/dependency/parser/models/clearparser_models.jar
./ctakes-dependency-parser-res/src/main/resources/org/
apache/ctakes/dependency/parser/models/srl/mayo-en-srl-1.3.0.jar
./ctakes-dependency-parser-res/src/main/resources/org/
apache/ctakes/dependency/parser/models/pred/mayo-en-pred-1.3.0.jar
./ctakes-dependency-parser-res/src/main/resources/org/
apache/ctakes/dependency/parser/models/role/mayo-en-role-1.3.0.jar
./ctakes-dependency-parser-res/src/main/resources/org/
apache/ctakes/dependency/parser/models/dependency/mayo-en-dep-1.3.0.jar
./ctakes-relation-extractor-res/src/main/resources/org/apache/ctakes/
relationextractor/models/location_of/model.jar
./ctakes-relation-extractor-res/src/main/resources/org/apache/ctakes/
relationextractor/models/degree_of/model.jar
./ctakes-relation-extractor-res/src/main/resources/org/apache/ctakes/
relationextractor/models/modifier_extractor/model.jar

I wonder if we cannot use maven's dependency management reference them instead embedding them in the resources folder.

Thanks,
Alexz

Re: source for .jar's in resources folder [EXTERNAL]

Posted by Alexandru Zbarcea <al...@apache.org>.
Yes it does answer the question.

Thanks,
Alexz

On Fri, Sep 22, 2017 at 5:47 PM, Finan, Sean <Sean.Finan@childrens.harvard.
edu> wrote:

> Hi Alexz,
>
> If I understand your question and comment ...
> Those models are not 3rd party jars.  They are part of ctakes, distributed
> with and for it.  They are machine learning models that have been developed
> using expertly-written gold annotations on clinical documents.  They are
> updated with version releases just like code.
>
> Does that answer your question?
>
>
> -----Original Message-----
> From: Alexandru Zbarcea [mailto:zbarcea.a@gmail.com]
> Sent: Friday, September 22, 2017 4:46 PM
> To: Apache cTAKES Dev
> Subject: source for .jar's in resources folder [EXTERNAL]
>
> Hi,
>
> Is there any documentation about how the following resources (*.jar) are
> generated or come from:
> ./ctakes-temporal-res/src/main/resources/org/apache/
> ctakes/temporal/ae/eventevent/model.jar
> ./ctakes-temporal-res/src/main/resources/org/apache/ctakes/temporal/ae/
> contextualmodality/model.jar
> ./ctakes-temporal-res/src/main/resources/org/apache/
> ctakes/temporal/ae/salience/model.jar
> ./ctakes-temporal-res/src/main/resources/org/apache/ctakes/temporal/ae/
> eventannotator/model.jar
> ./ctakes-temporal-res/src/main/resources/org/apache/
> ctakes/temporal/ae/doctimerel/model.jar
> ./ctakes-temporal-res/src/main/resources/org/apache/
> ctakes/temporal/ae/eventtime/model.jar
> ./ctakes-temporal-res/src/main/resources/org/apache/ctakes/temporal/ae/
> timeannotator/model.jar
> ./ctakes-pos-tagger-res/src/main/resources/org/apache/
> ctakes/postagger/models/clearnlp/mayo-en-pos-1.3.0.jar
> ./ctakes-coreference-res/src/main/resources/org/apache/
> ctakes/coreference/models/mention-cluster/model.jar
> ./ctakes-core-res/src/main/resources/org/apache/ctakes/
> core/sentdetect/model.jar
> ./ctakes-assertion-res/src/main/resources/org/apache/
> ctakes/assertion/models/subject/model.jar
> ./ctakes-assertion-res/src/main/resources/org/apache/
> ctakes/assertion/models/historyOf/model.jar
> ./ctakes-assertion-res/src/main/resources/org/apache/
> ctakes/assertion/models/uncertainty/model.jar
> ./ctakes-assertion-res/src/main/resources/org/apache/
> ctakes/assertion/models/conditional/model.jar
> ./ctakes-assertion-res/src/main/resources/org/apache/
> ctakes/assertion/models/polarity/sharpi2b2mipacqnegex/model.jar
> ./ctakes-assertion-res/src/main/resources/org/apache/
> ctakes/assertion/models/generic/model.jar
> ./ctakes-dependency-parser-res/src/main/resources/org/
> apache/ctakes/dependency/parser/models/lemmatizer/dictionary-1.3.1.jar
> ./ctakes-dependency-parser-res/src/main/resources/org/
> apache/ctakes/dependency/parser/models/clearparser_models.jar
> ./ctakes-dependency-parser-res/src/main/resources/org/
> apache/ctakes/dependency/parser/models/srl/mayo-en-srl-1.3.0.jar
> ./ctakes-dependency-parser-res/src/main/resources/org/
> apache/ctakes/dependency/parser/models/pred/mayo-en-pred-1.3.0.jar
> ./ctakes-dependency-parser-res/src/main/resources/org/
> apache/ctakes/dependency/parser/models/role/mayo-en-role-1.3.0.jar
> ./ctakes-dependency-parser-res/src/main/resources/org/
> apache/ctakes/dependency/parser/models/dependency/mayo-en-dep-1.3.0.jar
> ./ctakes-relation-extractor-res/src/main/resources/org/apache/ctakes/
> relationextractor/models/location_of/model.jar
> ./ctakes-relation-extractor-res/src/main/resources/org/apache/ctakes/
> relationextractor/models/degree_of/model.jar
> ./ctakes-relation-extractor-res/src/main/resources/org/apache/ctakes/
> relationextractor/models/modifier_extractor/model.jar
>
> I wonder if we cannot use maven's dependency management reference them
> instead embedding them in the resources folder.
>
> Thanks,
> Alexz
>