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Posted to commits@taverna.apache.org by st...@apache.org on 2016/06/08 12:40:52 UTC
[11/15] incubator-taverna-common-activities git commit: new cwl tools
which are custom
new cwl tools which are custom
Project: http://git-wip-us.apache.org/repos/asf/incubator-taverna-common-activities/repo
Commit: http://git-wip-us.apache.org/repos/asf/incubator-taverna-common-activities/commit/122dd14e
Tree: http://git-wip-us.apache.org/repos/asf/incubator-taverna-common-activities/tree/122dd14e
Diff: http://git-wip-us.apache.org/repos/asf/incubator-taverna-common-activities/diff/122dd14e
Branch: refs/heads/cwl-browse
Commit: 122dd14ef87a9de0db7251370b98f538a2a667ae
Parents: 17cdbdd
Author: ThilinaManamgoda <ma...@gmail.com>
Authored: Mon Jun 6 18:36:41 2016 +0530
Committer: ThilinaManamgoda <ma...@gmail.com>
Committed: Mon Jun 6 18:36:41 2016 +0530
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.../CWLFiles/binding-test.cwl | 20 ----------------
.../CWLFiles/count-lines3-wf.cwl | 25 --------------------
taverna-cwl-activity-ui/CWLFiles/params2.cwl | 10 --------
3 files changed, 55 deletions(-)
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http://git-wip-us.apache.org/repos/asf/incubator-taverna-common-activities/blob/122dd14e/taverna-cwl-activity-ui/CWLFiles/binding-test.cwl
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diff --git a/taverna-cwl-activity-ui/CWLFiles/binding-test.cwl b/taverna-cwl-activity-ui/CWLFiles/binding-test.cwl
deleted file mode 100644
index a72a583..0000000
--- a/taverna-cwl-activity-ui/CWLFiles/binding-test.cwl
+++ /dev/null
@@ -1,20 +0,0 @@
-#!/usr/bin/env cwl-runner
-
-class: CommandLineTool
-cwlVersion: cwl:draft-3
-
-inputs:
- - id: reference
- type: int
- inputBinding: { position: 2 }
-
- - id: reads
- type:
- type: array
- items: File
- inputBinding: { prefix: "-YYY" }
- inputBinding: { position: 3, prefix: "-XXX" }
-
-outputs: []
-
-baseCommand: [bwa, mem]
http://git-wip-us.apache.org/repos/asf/incubator-taverna-common-activities/blob/122dd14e/taverna-cwl-activity-ui/CWLFiles/count-lines3-wf.cwl
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diff --git a/taverna-cwl-activity-ui/CWLFiles/count-lines3-wf.cwl b/taverna-cwl-activity-ui/CWLFiles/count-lines3-wf.cwl
deleted file mode 100644
index e22092a..0000000
--- a/taverna-cwl-activity-ui/CWLFiles/count-lines3-wf.cwl
+++ /dev/null
@@ -1,25 +0,0 @@
-#!/usr/bin/env cwl-runner
-class: Workflow
-cwlVersion: cwl:draft-3
-
-inputs:
- - id: file12
- type: { type: array, items: File }
-
-outputs:
- - id: count_output
- type: { type: array, items: int }
- source: "#step1/output"
-
-requirements:
- - class: ScatterFeatureRequirement
-
-steps:
- - id: step1
- run: wc2-tool.cwl
- scatter: "#step1/file1"
- inputs:
- - id: file1
- source: "#file1"
- outputs:
- - id: output
http://git-wip-us.apache.org/repos/asf/incubator-taverna-common-activities/blob/122dd14e/taverna-cwl-activity-ui/CWLFiles/params2.cwl
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diff --git a/taverna-cwl-activity-ui/CWLFiles/params2.cwl b/taverna-cwl-activity-ui/CWLFiles/params2.cwl
deleted file mode 100644
index 6352c4f..0000000
--- a/taverna-cwl-activity-ui/CWLFiles/params2.cwl
+++ /dev/null
@@ -1,10 +0,0 @@
-class: CommandLineTool
-cwlVersion: cwl:draft-3
-requirements:
- - class: InlineJavascriptRequirement
-
-inputs: {"$import": params_inc.yml}
-
-outputs: {"$import": params_inc.yml}
-
-baseCommand: "true"