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Posted to jira@arrow.apache.org by "Jonathan Keane (Jira)" <ji...@apache.org> on 2021/04/22 18:33:00 UTC
[jira] [Commented] (ARROW-12503) [R] Cannot call
io___MemoryMappedFile__Open()
[ https://issues.apache.org/jira/browse/ARROW-12503?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=17329348#comment-17329348 ]
Jonathan Keane commented on ARROW-12503:
----------------------------------------
Thanks for the report, manual intervention like that definitely shouldn't be required. We have CI jobs that ensure that the package works on opensuse 15, but it looks like we don't (yet) have one for opensuse 15.2. I've added one to see if I can reproduce this. I'll keep you posted.
> [R] Cannot call io___MemoryMappedFile__Open()
> ---------------------------------------------
>
> Key: ARROW-12503
> URL: https://issues.apache.org/jira/browse/ARROW-12503
> Project: Apache Arrow
> Issue Type: Bug
> Components: R
> Environment: R4.0.5
> openSUSE Leap 15.2
> Reporter: bers
> Priority: Major
>
> I have checked [https://arrow.apache.org/docs/r/articles/install.html#package-installed-without-c-dependencies|https://arrow.apache.org/docs/r/articles/install.html#package-installed-without-c-dependencies,] and that none of the known issues apply to me.
> So then it's telling me to issue `[arrow::install_arrow(verbose = TRUE)|https://arrow.apache.org/docs/r/reference/install_arrow.html]`, which I did. Here's the output:
>
> ----
>
> {code}
> > arrow::install_arrow(verbose = TRUE)
> Installing package into ‘/data2/bers/opt/R/4.0/library’
> (as ‘lib’ is unspecified)
> trying URL 'https://cran.r-project.org/src/contrib/arrow_3.0.0.tar.gz'
> Content type 'application/x-gzip' length 344814 bytes (336 KB)
> ==================================================
> downloaded 336 KB
> * installing *source* package ‘arrow’ ...
> ** package ‘arrow’ successfully unpacked and MD5 sums checked
> ** using staged installation
> trying URL 'https://dl.bintray.com/ursalabs/arrow-r/libarrow/bin/opensuse-15/arrow-3.0.0.zip'
> Error in download.file(from_url, to_file, quiet = quietly) :
> cannot open URL 'https://dl.bintray.com/ursalabs/arrow-r/libarrow/bin/opensuse-15/arrow-3.0.0.zip'
> *** No C++ binaries found for opensuse-15
> trying URL 'https://dl.bintray.com/ursalabs/arrow-r/libarrow/src/arrow-3.0.0.zip'
> Error in download.file(from_url, to_file, quiet = quietly) :
> cannot open URL 'https://dl.bintray.com/ursalabs/arrow-r/libarrow/src/arrow-3.0.0.zip'
> trying URL 'https://www.apache.org/dyn/closer.lua?action=download&filename=arrow/arrow-3.0.0/apache-arrow-3.0.0.tar.gz'
> Content type 'application/x-gzip' length 8200790 bytes (7.8 MB)
> ==================================================
> downloaded 7.8 MB
> *
> **
> *** Successfully retrieved C++ source
> *** Building C++ libraries
> *** Building with MAKEFLAGS= -j2
> **** arrow with SOURCE_DIR="/tmp/RtmpOXZGhl/file156868fe52ec/apache-arrow-3.0.0/cpp" BUILD_DIR="/tmp/RtmpOXZGhl/file1568178b21a6" DEST_DIR="libarrow/arrow-3.0.0" CMAKE="/data2/bers/opt/cmake/bin/cmake" CC="gcc" CXX="g++ -std=gnu++11" LDFLAGS="-L/usr/local/lib64" ARROW_S3=ON ARROW_MIMALLOC=ON
> ++ pwd
> + : /tmp/RtmppXbaGR/R.INSTALL155322509007/arrow
> + : /tmp/RtmpOXZGhl/file156868fe52ec/apache-arrow-3.0.0/cpp
> + : /tmp/RtmpOXZGhl/file1568178b21a6
> + : libarrow/arrow-3.0.0
> + : /data2/bers/opt/cmake/bin/cmake
> ++ cd /tmp/RtmpOXZGhl/file156868fe52ec/apache-arrow-3.0.0/cpp
> ++ pwd
> + SOURCE_DIR=/tmp/RtmpOXZGhl/file156868fe52ec/apache-arrow-3.0.0/cpp
> ++ mkdir -p libarrow/arrow-3.0.0
> ++ cd libarrow/arrow-3.0.0
> ++ pwd
> + DEST_DIR=/tmp/RtmppXbaGR/R.INSTALL155322509007/arrow/libarrow/arrow-3.0.0
> + '[' '' = '' ']'
> + which ninja
> + '[' FALSE = false ']'
> + ARROW_DEFAULT_PARAM=OFF
> + mkdir -p /tmp/RtmpOXZGhl/file1568178b21a6
> + pushd /tmp/RtmpOXZGhl/file1568178b21a6
> /tmp/RtmpOXZGhl/file1568178b21a6 /tmp/RtmppXbaGR/R.INSTALL155322509007/arrow
> + /data2/bers/opt/cmake/bin/cmake -DARROW_BOOST_USE_SHARED=OFF -DARROW_BUILD_TESTS=OFF -DARROW_BUILD_SHARED=OFF -DARROW_BUILD_STATIC=ON -DARROW_COMPUTE=ON -DARROW_CSV=ON -DARROW_DATASET=ON -DARROW_DEPENDENCY_SOURCE=BUNDLED -DARROW_FILESYSTEM=ON -DARROW_JEMALLOC=ON -DARROW_MIMALLOC=ON -DARROW_JSON=ON -DARROW_PARQUET=ON -DARROW_S3=ON -DARROW_WITH_BROTLI=OFF -DARROW_WITH_BZ2=OFF -DARROW_WITH_LZ4=OFF -DARROW_WITH_SNAPPY=OFF -DARROW_WITH_UTF8PROC=OFF -DARROW_WITH_ZLIB=OFF -DARROW_WITH_ZSTD=OFF -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_LIBDIR=lib -DCMAKE_INSTALL_PREFIX=/tmp/RtmppXbaGR/R.INSTALL155322509007/arrow/libarrow/arrow-3.0.0 -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_UNITY_BUILD=ON -G 'Unix Makefiles' /tmp/RtmpOXZGhl/file156868fe52ec/apache-arrow-3.0.0/cpp
> -- Building using CMake version: 3.19.5
> -- The C compiler identification is GNU 7.5.0
> -- The CXX compiler identification is GNU 7.5.0
> -- Detecting C compiler ABI info
> -- Detecting C compiler ABI info - done
> -- Check for working C compiler: /usr/bin/gcc - skipped
> -- Detecting C compile features
> -- Detecting C compile features - done
> -- Detecting CXX compiler ABI info
> -- Detecting CXX compiler ABI info - done
> -- Check for working CXX compiler: /usr/bin/g++ - skipped
> -- Detecting CXX compile features
> -- Detecting CXX compile features - done
> -- Arrow version: 3.0.0 (full: '3.0.0')
> -- Arrow SO version: 300 (full: 300.0.0)
> -- clang-tidy not found
> -- clang-format not found
> -- Could NOT find ClangTools (missing: CLANG_FORMAT_BIN CLANG_TIDY_BIN)
> -- infer not found
> fatal: not a git repository (or any of the parent directories): .git
> -- Could NOT find Python3 (missing: Python3_EXECUTABLE Interpreter)
> Reason given by package:
> Interpreter: Cannot use the interpreter "/data2/bers/opt/pyenv/shims/python3.9"
> – Found cpplint executable at /tmp/RtmpOXZGhl/file156868fe52ec/apache-arrow-3.0.0/cpp/build-support/cpplint.py
> – System processor: x86_64
> – Performing Test CXX_SUPPORTS_SSE4_2
> – Performing Test CXX_SUPPORTS_SSE4_2 - Success
> – Performing Test CXX_SUPPORTS_AVX2
> – Performing Test CXX_SUPPORTS_AVX2 - Success
> – Performing Test CXX_SUPPORTS_AVX512
> – Performing Test CXX_SUPPORTS_AVX512 - Success
> – Arrow build warning level: PRODUCTION
> Using ld linker
> Configured for RELEASE build (set with cmake -DCMAKE_BUILD_TYPE=\{release,debug,...})
> – Build Type: RELEASE
> – Using BUNDLED approach to find dependencies
> – ARROW_ABSL_BUILD_VERSION: 0f3bb466b868b523cf1dc9b2aaaed65c77b28862
> – ARROW_AWSSDK_BUILD_VERSION: 1.8.90
> – ARROW_AWS_CHECKSUMS_BUILD_VERSION: v0.1.5
> – ARROW_AWS_C_COMMON_BUILD_VERSION: v0.4.59
> – ARROW_AWS_C_EVENT_STREAM_BUILD_VERSION: v0.1.5
> – ARROW_BOOST_BUILD_VERSION: 1.71.0
> – ARROW_BROTLI_BUILD_VERSION: v1.0.7
> – ARROW_BZIP2_BUILD_VERSION: 1.0.8
> – ARROW_CARES_BUILD_VERSION: 1.16.1
> – ARROW_GBENCHMARK_BUILD_VERSION: v1.5.2
> – ARROW_GFLAGS_BUILD_VERSION: v2.2.2
> – ARROW_GLOG_BUILD_VERSION: v0.4.0
> – ARROW_GRPC_BUILD_VERSION: v1.33.2
> – ARROW_GTEST_BUILD_VERSION: 1.10.0
> – ARROW_JEMALLOC_BUILD_VERSION: 5.2.1
> – ARROW_LZ4_BUILD_VERSION: v1.9.2
> – ARROW_MIMALLOC_BUILD_VERSION: v1.6.4
> – ARROW_ORC_BUILD_VERSION: 1.6.2
> – ARROW_PROTOBUF_BUILD_VERSION: v3.13.0
> – ARROW_RAPIDJSON_BUILD_VERSION: 1a803826f1197b5e30703afe4b9c0e7dd48074f5
> – ARROW_RE2_BUILD_VERSION: 2019-08-01
> – ARROW_SNAPPY_BUILD_VERSION: 1.1.8
> – ARROW_THRIFT_BUILD_VERSION: 0.12.0
> – ARROW_THRIFT_BUILD_MD5_CHECKSUM: 3deebbb4d1ca77dd9c9e009a1ea02183
> – ARROW_UTF8PROC_BUILD_VERSION: v2.5.0
> – ARROW_ZLIB_BUILD_VERSION: 1.2.11
> – ARROW_ZSTD_BUILD_VERSION: v1.4.5
> – Looking for pthread.h
> – Looking for pthread.h - found
> – Performing Test CMAKE_HAVE_LIBC_PTHREAD
> – Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed
> – Check if compiler accepts -pthread
> – Check if compiler accepts -pthread - yes
> – Found Threads: TRUE
> – Looking for __SIZEOF_INT128__
> – Looking for __SIZEOF_INT128__ - found
> – Boost include dir: /tmp/RtmpOXZGhl/file1568178b21a6/boost_ep-prefix/src/boost_ep
> – Boost libraries: boost_system_static;boost_filesystem_static
> – Found OpenSSL: /usr/lib64/libcrypto.so (found suitable version "1.1.1d", minimum required is "1.0.2")
> – Found OpenSSL Crypto Library: /usr/lib64/libcrypto.so
> – Building with OpenSSL (Version: 1.1.1d) support
> Building Apache Thrift from source
> – Building (vendored) jemalloc from source
> – Building (vendored) mimalloc from source
> – Building RapidJSON from source
> – Building ZLIB from source
> – Building RE2 from source
> – Found hdfs.h at: /tmp/RtmpOXZGhl/file156868fe52ec/apache-arrow-3.0.0/cpp/thirdparty/hadoop/include/hdfs.h
> Building AWS C++ SDK from source
> – Found CURL: /usr/lib64/libcurl.so (found version "7.72.0")
> – Found AWS SDK headers: /tmp/RtmpOXZGhl/file1568178b21a6/awssdk_ep-install/include
> – Found AWS SDK libraries: aws-cpp-sdk-identity-management;aws-cpp-sdk-sts;aws-cpp-sdk-cognito-identity;aws-cpp-sdk-s3;aws-cpp-sdk-core;AWS::aws-c-event-stream;AWS::aws-checksums;AWS::aws-c-common
> – All bundled static libraries: thrift::thrift;jemalloc::jemalloc;mimalloc::mimalloc;ZLIB::ZLIB;re2::re2;aws-cpp-sdk-identity-management;aws-cpp-sdk-sts;aws-cpp-sdk-cognito-identity;aws-cpp-sdk-s3;aws-cpp-sdk-core;AWS::aws-c-event-stream;AWS::aws-checksums;AWS::aws-c-common
> – CMAKE_C_FLAGS: -O3 -DNDEBUG -Wall -fno-semantic-interposition -msse4.2
> – CMAKE_CXX_FLAGS: -Wno-noexcept-type -Wno-subobject-linkage -fdiagnostics-color=always -O3 -DNDEBUG -Wall -fno-semantic-interposition -msse4.2
> – Looking for backtrace
> – Looking for backtrace - found
> – backtrace facility detected in default set of libraries
> – Found Backtrace: /usr/include
> – Creating bundled static library target arrow_bundled_dependencies at /tmp/RtmpOXZGhl/file1568178b21a6/release/libarrow_bundled_dependencies.a
> – ---------------------------------------------------------------------
> – Arrow version: 3.0.0
> –
> – Build configuration summary:
> – Generator: Unix Makefiles
> – Build type: RELEASE
> – Source directory: /tmp/RtmpOXZGhl/file156868fe52ec/apache-arrow-3.0.0/cpp
> – Install prefix: /tmp/RtmppXbaGR/R.INSTALL155322509007/arrow/libarrow/arrow-3.0.0
> –
> – Compile and link options:
> –
> – ARROW_CXXFLAGS="" [default=""]
> – Compiler flags to append when compiling Arrow
> – ARROW_BUILD_STATIC=ON [default=ON]
> – Build static libraries
> – ARROW_BUILD_SHARED=OFF [default=ON]
> – Build shared libraries
> – ARROW_PACKAGE_KIND="" [default=""]
> – Arbitrary string that identifies the kind of package
> – (for informational purposes)
> – ARROW_GIT_ID="" [default=""]
> – The Arrow git commit id (if any)
> – ARROW_GIT_DESCRIPTION="" [default=""]
> – The Arrow git commit description (if any)
> – ARROW_NO_DEPRECATED_API=OFF [default=OFF]
> – Exclude deprecated APIs from build
> – ARROW_USE_CCACHE=ON [default=ON]
> – Use ccache when compiling (if available)
> – ARROW_USE_LD_GOLD=OFF [default=OFF]
> – Use ld.gold for linking on Linux (if available)
> – ARROW_USE_PRECOMPILED_HEADERS=OFF [default=OFF]
> – Use precompiled headers when compiling
> – ARROW_SIMD_LEVEL=SSE4_2 [default=NONE|SSE4_2|AVX2|AVX512]
> – Compile-time SIMD optimization level
> – ARROW_RUNTIME_SIMD_LEVEL=MAX [default=NONE|SSE4_2|AVX2|AVX512|MAX]
> – Max runtime SIMD optimization level
> – ARROW_ARMV8_ARCH=armv8-a [default=armv8-a|armv8-a+crc+crypto]
> – Arm64 arch and extensions
> – ARROW_ALTIVEC=ON [default=ON]
> – Build with Altivec if compiler has support
> – ARROW_RPATH_ORIGIN=OFF [default=OFF]
> – Build Arrow libraries with RATH set to $ORIGIN
> – ARROW_INSTALL_NAME_RPATH=ON [default=ON]
> – Build Arrow libraries with install_name set to @rpath
> – ARROW_GGDB_DEBUG=ON [default=ON]
> – Pass -ggdb flag to debug builds
> –
> – Test and benchmark options:
> –
> – ARROW_BUILD_EXAMPLES=OFF [default=OFF]
> – Build the Arrow examples
> – ARROW_BUILD_TESTS=OFF [default=OFF]
> – Build the Arrow googletest unit tests
> – ARROW_ENABLE_TIMING_TESTS=ON [default=ON]
> – Enable timing-sensitive tests
> – ARROW_BUILD_INTEGRATION=OFF [default=OFF]
> – Build the Arrow integration test executables
> – ARROW_BUILD_BENCHMARKS=OFF [default=OFF]
> – Build the Arrow micro benchmarks
> – ARROW_BUILD_BENCHMARKS_REFERENCE=OFF [default=OFF]
> – Build the Arrow micro reference benchmarks
> – ARROW_TEST_LINKAGE=static [default=shared|static]
> – Linkage of Arrow libraries with unit tests executables.
> – ARROW_FUZZING=OFF [default=OFF]
> – Build Arrow Fuzzing executables
> – ARROW_LARGE_MEMORY_TESTS=OFF [default=OFF]
> – Enable unit tests which use large memory
> –
> – Lint options:
> –
> – ARROW_ONLY_LINT=OFF [default=OFF]
> – Only define the lint and check-format targets
> – ARROW_VERBOSE_LINT=OFF [default=OFF]
> – If off, 'quiet' flags will be passed to linting tools
> – ARROW_GENERATE_COVERAGE=OFF [default=OFF]
> – Build with C++ code coverage enabled
> –
> – Checks options:
> –
> – ARROW_TEST_MEMCHECK=OFF [default=OFF]
> – Run the test suite using valgrind --tool=memcheck
> – ARROW_USE_ASAN=OFF [default=OFF]
> – Enable Address Sanitizer checks
> – ARROW_USE_TSAN=OFF [default=OFF]
> – Enable Thread Sanitizer checks
> – ARROW_USE_UBSAN=OFF [default=OFF]
> – Enable Undefined Behavior sanitizer checks
> –
> – Project component options:
> –
> – ARROW_BUILD_UTILITIES=OFF [default=OFF]
> – Build Arrow commandline utilities
> – ARROW_COMPUTE=ON [default=OFF]
> – Build the Arrow Compute Modules
> – ARROW_CSV=ON [default=OFF]
> – Build the Arrow CSV Parser Module
> – ARROW_CUDA=OFF [default=OFF]
> – Build the Arrow CUDA extensions (requires CUDA toolkit)
> – ARROW_DATASET=ON [default=OFF]
> – Build the Arrow Dataset Modules
> – ARROW_FILESYSTEM=ON [default=OFF]
> – Build the Arrow Filesystem Layer
> – ARROW_FLIGHT=OFF [default=OFF]
> – Build the Arrow Flight RPC System (requires GRPC, Protocol Buffers)
> – ARROW_GANDIVA=OFF [default=OFF]
> – Build the Gandiva libraries
> – ARROW_HDFS=OFF [default=OFF]
> – Build the Arrow HDFS bridge
> – ARROW_HIVESERVER2=OFF [default=OFF]
> – Build the HiveServer2 client and Arrow adapter
> – ARROW_IPC=ON [default=ON]
> – Build the Arrow IPC extensions
> – ARROW_JEMALLOC=ON [default=ON]
> – Build the Arrow jemalloc-based allocator
> – ARROW_JNI=OFF [default=OFF]
> – Build the Arrow JNI lib
> – ARROW_JSON=ON [default=OFF]
> – Build Arrow with JSON support (requires RapidJSON)
> – ARROW_MIMALLOC=ON [default=OFF]
> – Build the Arrow mimalloc-based allocator
> – ARROW_PARQUET=ON [default=OFF]
> – Build the Parquet libraries
> – ARROW_ORC=OFF [default=OFF]
> – Build the Arrow ORC adapter
> – ARROW_PLASMA=OFF [default=OFF]
> – Build the plasma object store along with Arrow
> – ARROW_PLASMA_JAVA_CLIENT=OFF [default=OFF]
> – Build the plasma object store java client
> – ARROW_PYTHON=OFF [default=OFF]
> – Build the Arrow CPython extensions
> – ARROW_S3=ON [default=OFF]
> – Build Arrow with S3 support (requires the AWS SDK for C++)
> – ARROW_TENSORFLOW=OFF [default=OFF]
> – Build Arrow with TensorFlow support enabled
> – ARROW_TESTING=OFF [default=OFF]
> – Build the Arrow testing libraries
> –
> – Thirdparty toolchain options:
> –
> – ARROW_DEPENDENCY_SOURCE=BUNDLED [default=AUTO|BUNDLED|SYSTEM|CONDA|BREW]
> – Method to use for acquiring arrow's build dependencies
> – ARROW_VERBOSE_THIRDPARTY_BUILD=OFF [default=OFF]
> – Show output from ExternalProjects rather than just logging to files
> – ARROW_DEPENDENCY_USE_SHARED=ON [default=ON]
> – Link to shared libraries
> – ARROW_BOOST_USE_SHARED=OFF [default=ON]
> – Rely on boost shared libraries where relevant
> – ARROW_BROTLI_USE_SHARED=ON [default=ON]
> – Rely on Brotli shared libraries where relevant
> – ARROW_BZ2_USE_SHARED=ON [default=ON]
> – Rely on Bz2 shared libraries where relevant
> – ARROW_GFLAGS_USE_SHARED=ON [default=ON]
> – Rely on GFlags shared libraries where relevant
> – ARROW_GRPC_USE_SHARED=ON [default=ON]
> – Rely on gRPC shared libraries where relevant
> – ARROW_LZ4_USE_SHARED=ON [default=ON]
> – Rely on lz4 shared libraries where relevant
> – ARROW_OPENSSL_USE_SHARED=ON [default=ON]
> – Rely on OpenSSL shared libraries where relevant
> – ARROW_PROTOBUF_USE_SHARED=ON [default=ON]
> – Rely on Protocol Buffers shared libraries where relevant
> – ARROW_THRIFT_USE_SHARED=ON [default=ON]
> – Rely on thrift shared libraries where relevant
> – ARROW_UTF8PROC_USE_SHARED=ON [default=ON]
> – Rely on utf8proc shared libraries where relevant
> – ARROW_SNAPPY_USE_SHARED=ON [default=ON]
> – Rely on snappy shared libraries where relevant
> – ARROW_UTF8PROC_USE_SHARED=ON [default=ON]
> – Rely on utf8proc shared libraries where relevant
> – ARROW_ZSTD_USE_SHARED=ON [default=ON]
> – Rely on zstd shared libraries where relevant
> – ARROW_USE_GLOG=OFF [default=OFF]
> – Build libraries with glog support for pluggable logging
> – ARROW_WITH_BACKTRACE=ON [default=ON]
> – Build with backtrace support
> – ARROW_WITH_BROTLI=OFF [default=OFF]
> – Build with Brotli compression
> – ARROW_WITH_BZ2=OFF [default=OFF]
> – Build with BZ2 compression
> – ARROW_WITH_LZ4=OFF [default=OFF]
> – Build with lz4 compression
> – ARROW_WITH_SNAPPY=OFF [default=OFF]
> – Build with Snappy compression
> – ARROW_WITH_ZLIB=ON [default=OFF]
> – Build with zlib compression
> – ARROW_WITH_ZSTD=OFF [default=OFF]
> – Build with zstd compression
> – ARROW_WITH_UTF8PROC=OFF [default=ON]
> – Build with support for Unicode properties using the utf8proc library
> – (only used if ARROW_COMPUTE is ON)
> – ARROW_WITH_RE2=ON [default=ON]
> – Build with support for regular expressions using the re2 library
> – (only used if ARROW_COMPUTE or ARROW_GANDIVA is ON)
> –
> – Parquet options:
> –
> – PARQUET_MINIMAL_DEPENDENCY=OFF [default=OFF]
> – Depend only on Thirdparty headers to build libparquet.
> – Always OFF if building binaries
> – PARQUET_BUILD_EXECUTABLES=OFF [default=OFF]
> – Build the Parquet executable CLI tools. Requires static libraries to be built.
> – PARQUET_BUILD_EXAMPLES=OFF [default=OFF]
> – Build the Parquet examples. Requires static libraries to be built.
> – PARQUET_REQUIRE_ENCRYPTION=OFF [default=OFF]
> – Build support for encryption. Fail if OpenSSL is not found
> –
> – Gandiva options:
> –
> – ARROW_GANDIVA_JAVA=OFF [default=OFF]
> – Build the Gandiva JNI wrappers
> – ARROW_GANDIVA_STATIC_LIBSTDCPP=OFF [default=OFF]
> – Include -static-libstdc++ -static-libgcc when linking with
> – Gandiva static libraries
> – ARROW_GANDIVA_PC_CXX_FLAGS="" [default=""]
> – Compiler flags to append when pre-compiling Gandiva operations
> –
> – Advanced developer options:
> –
> – ARROW_EXTRA_ERROR_CONTEXT=OFF [default=OFF]
> – Compile with extra error context (line numbers, code)
> – ARROW_OPTIONAL_INSTALL=OFF [default=OFF]
> – If enabled install ONLY targets that have already been built. Please be
> – advised that if this is enabled 'install' will fail silently on components
> – that have not been built
> – Outputting build configuration summary to /tmp/RtmpOXZGhl/file1568178b21a6/cmake_summary.json
> – Configuring done
> – Generating done
> – Build files have been written to: /tmp/RtmpOXZGhl/file1568178b21a6
> + /data2/bers/opt/cmake/bin/cmake --build . --target install
> Scanning dependencies of target jemalloc_ep
> Scanning dependencies of target boost_ep
> [ 0%] Creating directories for 'jemalloc_ep'
> [ 1%] Creating directories for 'boost_ep'
> [ 2%] Performing download step (download, verify and extract) for 'jemalloc_ep'
> [ 3%] Performing download step (download, verify and extract) for 'boost_ep'
> – jemalloc_ep download command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/jemalloc_ep-prefix/src/jemalloc_ep-stamp/jemalloc_ep-download-*.log
> [ 4%] No update step for 'jemalloc_ep'
> [ 5%] Performing patch step for 'jemalloc_ep'
> [ 6%] Performing configure step for 'jemalloc_ep'
> – boost_ep download command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/boost_ep-prefix/src/boost_ep-stamp/boost_ep-download-*.log
> [ 7%] No update step for 'boost_ep'
> [ 8%] No patch step for 'boost_ep'
> [ 8%] No configure step for 'boost_ep'
> [ 9%] No build step for 'boost_ep'
> [ 9%] No install step for 'boost_ep'
> [ 10%] Completed 'boost_ep'
> [ 10%] Built target boost_ep
> Scanning dependencies of target rapidjson_ep
> [ 11%] Creating directories for 'rapidjson_ep'
> [ 12%] Performing download step (download, verify and extract) for 'rapidjson_ep'
> – rapidjson_ep download command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/src/rapidjson_ep-stamp/rapidjson_ep-download-*.log
> [ 13%] No update step for 'rapidjson_ep'
> [ 13%] No patch step for 'rapidjson_ep'
> [ 14%] Performing configure step for 'rapidjson_ep'
> – rapidjson_ep configure command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/src/rapidjson_ep-stamp/rapidjson_ep-configure-*.log
> [ 15%] Performing build step for 'rapidjson_ep'
> – rapidjson_ep build command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/src/rapidjson_ep-stamp/rapidjson_ep-build-*.log
> [ 16%] Performing install step for 'rapidjson_ep'
> – rapidjson_ep install command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/src/rapidjson_ep-stamp/rapidjson_ep-install-*.log
> [ 16%] Completed 'rapidjson_ep'
> [ 16%] Built target rapidjson_ep
> Scanning dependencies of target aws_c_common_ep
> [ 16%] Creating directories for 'aws_c_common_ep'
> [ 17%] Performing download step (download, verify and extract) for 'aws_c_common_ep'
> – aws_c_common_ep download command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/aws_c_common_ep-prefix/src/aws_c_common_ep-stamp/aws_c_common_ep-download-*.log
> [ 18%] No update step for 'aws_c_common_ep'
> [ 19%] No patch step for 'aws_c_common_ep'
> [ 20%] Performing configure step for 'aws_c_common_ep'
> – aws_c_common_ep configure command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/aws_c_common_ep-prefix/src/aws_c_common_ep-stamp/aws_c_common_ep-configure-*.log
> [ 20%] Performing build step for 'aws_c_common_ep'
> – jemalloc_ep configure command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/jemalloc_ep-prefix/src/jemalloc_ep-stamp/jemalloc_ep-configure-*.log
> [ 20%] Performing build step for 'jemalloc_ep'
> – aws_c_common_ep build command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/aws_c_common_ep-prefix/src/aws_c_common_ep-stamp/aws_c_common_ep-build-*.log
> [ 21%] Performing install step for 'aws_c_common_ep'
> – aws_c_common_ep install command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/aws_c_common_ep-prefix/src/aws_c_common_ep-stamp/aws_c_common_ep-install-*.log
> [ 22%] Completed 'aws_c_common_ep'
> [ 22%] Built target aws_c_common_ep
> Scanning dependencies of target aws_checksums_ep
> [ 23%] Creating directories for 'aws_checksums_ep'
> [ 24%] Performing download step (download, verify and extract) for 'aws_checksums_ep'
> – aws_checksums_ep download command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/aws_checksums_ep-prefix/src/aws_checksums_ep-stamp/aws_checksums_ep-download-*.log
> [ 24%] No update step for 'aws_checksums_ep'
> [ 25%] No patch step for 'aws_checksums_ep'
> [ 26%] Performing configure step for 'aws_checksums_ep'
> – aws_checksums_ep configure command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/aws_checksums_ep-prefix/src/aws_checksums_ep-stamp/aws_checksums_ep-configure-*.log
> [ 27%] Performing build step for 'aws_checksums_ep'
> – aws_checksums_ep build command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/aws_checksums_ep-prefix/src/aws_checksums_ep-stamp/aws_checksums_ep-build-*.log
> [ 28%] Performing install step for 'aws_checksums_ep'
> – aws_checksums_ep install command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/aws_checksums_ep-prefix/src/aws_checksums_ep-stamp/aws_checksums_ep-install-*.log
> [ 29%] Completed 'aws_checksums_ep'
> [ 29%] Built target aws_checksums_ep
> Scanning dependencies of target zlib_ep
> [ 30%] Creating directories for 'zlib_ep'
> [ 30%] Performing download step (download, verify and extract) for 'zlib_ep'
> – zlib_ep download command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/zlib_ep-prefix/src/zlib_ep-stamp/zlib_ep-download-*.log
> [ 31%] No update step for 'zlib_ep'
> [ 32%] No patch step for 'zlib_ep'
> [ 33%] Performing configure step for 'zlib_ep'
> – zlib_ep configure command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/zlib_ep-prefix/src/zlib_ep-stamp/zlib_ep-configure-*.log
> [ 34%] Performing build step for 'zlib_ep'
> – zlib_ep build command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/zlib_ep-prefix/src/zlib_ep-stamp/zlib_ep-build-*.log
> [ 35%] Performing install step for 'zlib_ep'
> – zlib_ep install command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/zlib_ep-prefix/src/zlib_ep-stamp/zlib_ep-install-*.log
> [ 36%] Completed 'zlib_ep'
> [ 36%] Built target zlib_ep
> Scanning dependencies of target mimalloc_ep
> [ 37%] Creating directories for 'mimalloc_ep'
> [ 37%] Performing download step (download, verify and extract) for 'mimalloc_ep'
> – Downloading...
> dst='/tmp/RtmpOXZGhl/file1568178b21a6/mimalloc_ep-prefix/src/v1.6.4.tar.gz'
> timeout='none'
> inactivity timeout='none'
> – Using src='https://github.com/microsoft/mimalloc/archive/v1.6.4.tar.gz'
> – [download 100% complete]
> – [download 1% complete]
> – [download 6% complete]
> – [download 14% complete]
> – [download 30% complete]
> – [download 52% complete]
> – [download 64% complete]
> – [download 85% complete]
> – [download 100% complete]
> – Downloading... done
> – extracting...
> src='/tmp/RtmpOXZGhl/file1568178b21a6/mimalloc_ep-prefix/src/v1.6.4.tar.gz'
> dst='/tmp/RtmpOXZGhl/file1568178b21a6/mimalloc_ep-prefix/src/mimalloc_ep'
> – extracting... [tar xfz]
> – extracting... [analysis]
> – extracting... [rename]
> – extracting... [clean up]
> – extracting... done
> [ 38%] No update step for 'mimalloc_ep'
> [ 39%] No patch step for 'mimalloc_ep'
> [ 40%] Performing configure step for 'mimalloc_ep'
> – The C compiler identification is GNU 7.5.0
> – The CXX compiler identification is GNU 7.5.0
> – Detecting C compiler ABI info
> – Detecting C compiler ABI info - done
> – Check for working C compiler: /usr/bin/gcc - skipped
> – Detecting C compile features
> – Detecting C compile features - done
> – Detecting CXX compiler ABI info
> – Detecting CXX compiler ABI info - done
> – Check for working CXX compiler: /usr/bin/g++ - skipped
> – Detecting CXX compile features
> – Detecting CXX compile features - done
> –
> – Library base name: mimalloc
> – Build type : release
> – Install directory: /tmp/RtmpOXZGhl/file1568178b21a6/mimalloc_ep/src/mimalloc_ep/lib/mimalloc-1.6
> – Build targets : static
> –
> – Configuring done
> – Generating done
> CMake Warning:
> Manually-specified variables were not used by the project:
> CMAKE_EXPORT_NO_PACKAGE_REGISTRY
> CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY
> – Build files have been written to: /tmp/RtmpOXZGhl/file1568178b21a6/mimalloc_ep-prefix/src/mimalloc_ep-build
> [ 40%] Performing build step for 'mimalloc_ep'
> Scanning dependencies of target mimalloc-static
> [ 7%] Building C object CMakeFiles/mimalloc-static.dir/src/stats.c.o
> [ 14%] Building C object CMakeFiles/mimalloc-static.dir/src/random.c.o
> [ 21%] Building C object CMakeFiles/mimalloc-static.dir/src/os.c.o
> [ 28%] Building C object CMakeFiles/mimalloc-static.dir/src/arena.c.o
> [ 35%] Building C object CMakeFiles/mimalloc-static.dir/src/region.c.o
> [ 42%] Building C object CMakeFiles/mimalloc-static.dir/src/segment.c.o
> [ 50%] Building C object CMakeFiles/mimalloc-static.dir/src/page.c.o
> [ 57%] Building C object CMakeFiles/mimalloc-static.dir/src/alloc.c.o
> [ 64%] Building C object CMakeFiles/mimalloc-static.dir/src/alloc-aligned.c.o
> [ 71%] Building C object CMakeFiles/mimalloc-static.dir/src/alloc-posix.c.o
> [ 78%] Building C object CMakeFiles/mimalloc-static.dir/src/heap.c.o
> [ 85%] Building C object CMakeFiles/mimalloc-static.dir/src/options.c.o
> [ 92%] Building C object CMakeFiles/mimalloc-static.dir/src/init.c.o
> [100%] Linking C static library libmimalloc.a
> [100%] Built target mimalloc-static
> [ 41%] Performing install step for 'mimalloc_ep'
> [100%] Built target mimalloc-static
> Install the project...
> – Install configuration: "RELEASE"
> – Installing: /tmp/RtmpOXZGhl/file1568178b21a6/mimalloc_ep/src/mimalloc_ep/lib/mimalloc-1.6/libmimalloc.a
> – Installing: /tmp/RtmpOXZGhl/file1568178b21a6/mimalloc_ep/src/mimalloc_ep/lib/mimalloc-1.6/include/mimalloc.h
> – Installing: /tmp/RtmpOXZGhl/file1568178b21a6/mimalloc_ep/src/mimalloc_ep/lib/mimalloc-1.6/include/mimalloc-override.h
> – Installing: /tmp/RtmpOXZGhl/file1568178b21a6/mimalloc_ep/src/mimalloc_ep/lib/mimalloc-1.6/include/mimalloc-new-delete.h
> – Installing: /tmp/RtmpOXZGhl/file1568178b21a6/mimalloc_ep/src/mimalloc_ep/lib/mimalloc-1.6/cmake/mimalloc-config.cmake
> – Installing: /tmp/RtmpOXZGhl/file1568178b21a6/mimalloc_ep/src/mimalloc_ep/lib/mimalloc-1.6/cmake/mimalloc-config-version.cmake
> [ 42%] Completed 'mimalloc_ep'
> [ 42%] Built target mimalloc_ep
> Scanning dependencies of target re2_ep
> [ 43%] Creating directories for 're2_ep'
> [ 44%] Performing download step (download, verify and extract) for 're2_ep'
> – re2_ep download command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/re2_ep-prefix/src/re2_ep-stamp/re2_ep-download-*.log
> [ 45%] No update step for 're2_ep'
> [ 46%] No patch step for 're2_ep'
> [ 46%] Performing configure step for 're2_ep'
> – re2_ep configure command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/re2_ep-prefix/src/re2_ep-stamp/re2_ep-configure-*.log
> [ 47%] Performing build step for 're2_ep'
> – jemalloc_ep build command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/jemalloc_ep-prefix/src/jemalloc_ep-stamp/jemalloc_ep-build-*.log
> [ 48%] Performing install step for 'jemalloc_ep'
> – jemalloc_ep install command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/jemalloc_ep-prefix/src/jemalloc_ep-stamp/jemalloc_ep-install-*.log
> [ 49%] Completed 'jemalloc_ep'
> [ 49%] Built target jemalloc_ep
> Scanning dependencies of target arrow_dataset_objlib
> [ 50%] Building CXX object src/arrow/dataset/CMakeFiles/arrow_dataset_objlib.dir/Unity/unity_1_cxx.cxx.o
> [ 51%] Building CXX object src/arrow/dataset/CMakeFiles/arrow_dataset_objlib.dir/Unity/unity_0_cxx.cxx.o
> – re2_ep build command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/re2_ep-prefix/src/re2_ep-stamp/re2_ep-build-*.log
> [ 51%] Performing install step for 're2_ep'
> – re2_ep install command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/re2_ep-prefix/src/re2_ep-stamp/re2_ep-install-*.log
> [ 52%] Completed 're2_ep'
> [ 52%] Built target re2_ep
> Scanning dependencies of target thrift_ep
> [ 52%] Creating directories for 'thrift_ep'
> [ 53%] Performing download step (download, verify and extract) for 'thrift_ep'
> – thrift_ep download command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/thrift_ep-prefix/src/thrift_ep-stamp/thrift_ep-download-*.log
> [ 54%] No update step for 'thrift_ep'
> [ 55%] No patch step for 'thrift_ep'
> [ 56%] Performing configure step for 'thrift_ep'
> [ 56%] Built target arrow_dataset_objlib
> Scanning dependencies of target aws_c_event_stream_ep
> [ 57%] Creating directories for 'aws_c_event_stream_ep'
> [ 57%] Performing download step (download, verify and extract) for 'aws_c_event_stream_ep'
> – aws_c_event_stream_ep download command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/aws_c_event_stream_ep-prefix/src/aws_c_event_stream_ep-stamp/aws_c_event_stream_ep-download-*.log
> [ 58%] No update step for 'aws_c_event_stream_ep'
> [ 59%] No patch step for 'aws_c_event_stream_ep'
> [ 60%] Performing configure step for 'aws_c_event_stream_ep'
> – aws_c_event_stream_ep configure command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/aws_c_event_stream_ep-prefix/src/aws_c_event_stream_ep-stamp/aws_c_event_stream_ep-configure-*.log
> [ 60%] Performing build step for 'aws_c_event_stream_ep'
> – aws_c_event_stream_ep build command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/aws_c_event_stream_ep-prefix/src/aws_c_event_stream_ep-stamp/aws_c_event_stream_ep-build-*.log
> [ 61%] Performing install step for 'aws_c_event_stream_ep'
> – aws_c_event_stream_ep install command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/aws_c_event_stream_ep-prefix/src/aws_c_event_stream_ep-stamp/aws_c_event_stream_ep-install-*.log
> [ 62%] Completed 'aws_c_event_stream_ep'
> [ 62%] Built target aws_c_event_stream_ep
> Scanning dependencies of target awssdk_ep
> [ 63%] Creating directories for 'awssdk_ep'
> [ 64%] Performing download step (download, verify and extract) for 'awssdk_ep'
> – thrift_ep configure command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/thrift_ep-prefix/src/thrift_ep-stamp/thrift_ep-configure-*.log
> [ 64%] Performing build step for 'thrift_ep'
> – awssdk_ep download command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/awssdk_ep-prefix/src/awssdk_ep-stamp/awssdk_ep-download-*.log
> [ 65%] No update step for 'awssdk_ep'
> [ 65%] No patch step for 'awssdk_ep'
> [ 66%] Performing configure step for 'awssdk_ep'
> – awssdk_ep configure command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/awssdk_ep-prefix/src/awssdk_ep-stamp/awssdk_ep-configure-*.log
> [ 67%] Performing build step for 'awssdk_ep'
> – thrift_ep build command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/thrift_ep-prefix/src/thrift_ep-stamp/thrift_ep-build-*.log
> [ 68%] Performing install step for 'thrift_ep'
> – thrift_ep install command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/thrift_ep-prefix/src/thrift_ep-stamp/thrift_ep-install-*.log
> [ 69%] Completed 'thrift_ep'
> [ 69%] Built target thrift_ep
> – awssdk_ep build command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/awssdk_ep-prefix/src/awssdk_ep-stamp/awssdk_ep-build-*.log
> [ 70%] Performing install step for 'awssdk_ep'
> – awssdk_ep install command succeeded. See also /tmp/RtmpOXZGhl/file1568178b21a6/awssdk_ep-prefix/src/awssdk_ep-stamp/awssdk_ep-install-*.log
> [ 70%] Completed 'awssdk_ep'
> [ 70%] Built target awssdk_ep
> Scanning dependencies of target toolchain
> Scanning dependencies of target arrow_bundled_dependencies
> [ 70%] Built target toolchain
> [ 70%] Bundling /tmp/RtmpOXZGhl/file1568178b21a6/release/libarrow_bundled_dependencies.a
> Scanning dependencies of target arrow_dependencies
> /usr/bin/ar: /tmp/RtmpOXZGhl/file1568178b21a6/jemalloc_ep-prefix/src/jemalloc_ep/dist//lib/libjemalloc_pic.a: No such file or directory
> make[2]: *** [src/arrow/CMakeFiles/arrow_bundled_dependencies.dir/build.make:80: release/libarrow_bundled_dependencies.a] Error 9
> make[1]: *** [CMakeFiles/Makefile2:1388: src/arrow/CMakeFiles/arrow_bundled_dependencies.dir/all] Error 2
> make[1]: *** Waiting for unfinished jobs....
> [ 70%] Built target arrow_dependencies
> gmake: *** [Makefile:160: all] Error 2
> + popd
> /tmp/RtmppXbaGR/R.INSTALL155322509007/arrow
> ------------------------- NOTE ---------------------------
> See [https://arrow.apache.org/docs/r/articles/install.html]
> for help installing Arrow C++ libraries
> ---------------------------------------------------------
> *
> ** libs
> g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG -I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic -fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -c array.cpp -o array.o
> g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG -I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic -fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -c array_from_vector.cpp -o array_from_vector.o
> g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG -I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic -fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -c array_to_vector.cpp -o array_to_vector.o
> g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG -I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic -fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -c arraydata.cpp -o arraydata.o
> g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG -I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic -fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -c arrowExports.cpp -o arrowExports.o
> g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG -I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic -fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -c buffer.cpp -o buffer.o
> g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG -I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic -fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -c chunkedarray.cpp -o chunkedarray.o
> g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG -I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic -fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -c compression.cpp -o compression.o
> g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG -I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic -fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -c compute.cpp -o compute.o
> g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG -I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic -fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -c csv.cpp -o csv.o
> g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG -I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic -fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -c dataset.cpp -o dataset.o
> g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG -I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic -fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -c datatype.cpp -o datatype.o
> g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG -I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic -fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -c expression.cpp -o expression.o
> g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG -I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic -fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -c feather.cpp -o feather.o
> g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG -I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic -fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -c field.cpp -o field.o
> g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG -I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic -fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -c filesystem.cpp -o filesystem.o
> g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG -I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic -fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -c imports.cpp -o imports.o
> g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG -I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic -fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -c io.cpp -o io.o
> g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG -I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic -fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -c json.cpp -o json.o
> g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG -I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic -fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -c memorypool.cpp -o memorypool.o
> g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG -I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic -fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -c message.cpp -o message.o
> g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG -I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic -fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -c parquet.cpp -o parquet.o
> g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG -I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic -fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -c py-to-r.cpp -o py-to-r.o
> g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG -I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic -fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -c recordbatch.cpp -o recordbatch.o
> g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG -I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic -fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -c recordbatchreader.cpp -o recordbatchreader.o
> g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG -I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic -fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -c recordbatchwriter.cpp -o recordbatchwriter.o
> g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG -I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic -fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -c scalar.cpp -o scalar.o
> g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG -I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic -fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -c schema.cpp -o schema.o
> g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG -I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic -fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -c symbols.cpp -o symbols.o
> g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG -I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic -fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -c table.cpp -o table.o
> g++ -std=gnu++11 -I"/usr/lib64/R/include" -DNDEBUG -I'/data2/bers/opt/R/4.0/library/cpp11/include' -I/usr/local/include -fpic -fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -c threadpool.cpp -o threadpool.o
> g++ -std=gnu++11 -shared -L/usr/lib64/R/lib -L/usr/local/lib64 -o arrow.so array.o array_from_vector.o array_to_vector.o arraydata.o arrowExports.o buffer.o chunkedarray.o compression.o compute.o csv.o dataset.o datatype.o expression.o feather.o field.o filesystem.o imports.o io.o json.o memorypool.o message.o parquet.o py-to-r.o recordbatch.o recordbatchreader.o recordbatchwriter.o scalar.o schema.o symbols.o table.o threadpool.o -L/usr/lib64/R/lib -lR
> installing to /data2/bers/opt/R/4.0/library/00LOCK-arrow/00new/arrow/libs
> ** R
> ** inst
> ** byte-compile and prepare package for lazy loading
> ** help
> *** installing help indices
> ** building package indices
> ** installing vignettes
> ** testing if installed package can be loaded from temporary location
> ** checking absolute paths in shared objects and dynamic libraries
> ** testing if installed package can be loaded from final location
> ** testing if installed package keeps a record of temporary installation path
> * DONE (arrow)
> {code}
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