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Posted to mapreduce-issues@hadoop.apache.org by "Robert Joseph Evans (Commented) (JIRA)" <ji...@apache.org> on 2012/04/02 18:11:26 UTC
[jira] [Commented] (MAPREDUCE-4072) User set java.library.path
seems to overwrite default creating problems native lib loading
[ https://issues.apache.org/jira/browse/MAPREDUCE-4072?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=13244289#comment-13244289 ]
Robert Joseph Evans commented on MAPREDUCE-4072:
------------------------------------------------
I wanted to add in that I am OK with removing the lines in the patch, so long as you have tested this on a cluster with the Linux container executor enabled and also the native libraries to verify that those lines are not needed.
> User set java.library.path seems to overwrite default creating problems native lib loading
> ------------------------------------------------------------------------------------------
>
> Key: MAPREDUCE-4072
> URL: https://issues.apache.org/jira/browse/MAPREDUCE-4072
> Project: Hadoop Map/Reduce
> Issue Type: Bug
> Components: mrv2
> Reporter: Anupam Seth
> Assignee: Anupam Seth
> Attachments: MAPREDUCE-4072-branch-23.patch
>
>
> This was found by Peeyush Bishnoi.
> While running a distributed cache example with Hadoop-0.23,
> tasks are failing as follows:
> ------------------------------------------------------------------------------------------------------------
> Exception from container-launch:
> org.apache.hadoop.util.Shell$ExitCodeException: at
> org.apache.hadoop.util.Shell.runCommand(Shell.java:261) at
> org.apache.hadoop.util.Shell.run(Shell.java:188) at
> org.apache.hadoop.util.Shell$ShellCommandExecutor.execute(Shell.java:381) at
> org.apache.hadoop.yarn.server.nodemanager.LinuxContainerExecutor.launchContainer(LinuxContainerExecutor.java:207)
> at
> org.apache.hadoop.yarn.server.nodemanager.containermanager.launcher.ContainerLaunch.call(ContainerLaunch.java:241)
> at
> org.apache.hadoop.yarn.server.nodemanager.containermanager.launcher.ContainerLaunch.call(ContainerLaunch.java:68)
> at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303) at
> java.util.concurrent.FutureTask.run(FutureTask.java:138) at
> java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
> at
> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
> at java.lang.Thread.run(Thread.java:619) main : command provided 1 main : user
> is <user>
> ------------------------------------------------------------------------------------------------------------
> Same Pig script and command work successfully on 0.20
> See this in the stderr:
> Exception in thread "main" java.lang.ExceptionInInitializerError
> at java.lang.Class.forName0(Native Method)
> at java.lang.Class.forName(Class.java:247)
> at
> org.apache.hadoop.conf.Configuration.getClassByNameOrNull(Configuration.java:1179)
> at
> org.apache.hadoop.conf.Configuration.getClassByName(Configuration.java:1149)
> at org.apache.hadoop.conf.Configuration.getClass(Configuration.java:1238)
> at org.apache.hadoop.conf.Configuration.getClass(Configuration.java:1264)
> at org.apache.hadoop.security.Groups.(Groups.java:54)
> at
> org.apache.hadoop.security.Groups.getUserToGroupsMappingService(Groups.java:178)
> at
> org.apache.hadoop.security.UserGroupInformation.initUGI(UserGroupInformation.java:252)
> at
> org.apache.hadoop.security.UserGroupInformation.initialize(UserGroupInformation.java:223)
> at
> org.apache.hadoop.security.UserGroupInformation.setConfiguration(UserGroupInformation.java:265)
> at org.apache.hadoop.mapred.YarnChild.main(YarnChild.java:75)
> Caused by: java.lang.RuntimeException: Bailing out since native library
> couldn't be loaded
> at
> org.apache.hadoop.security.JniBasedUnixGroupsMapping.(JniBasedUnixGroupsMapping.java:48)
> ... 12 more
> Pig command:
> $ pig -Dmapred.job.queue.name=<queue> -Dmapred.cache.archives=<archives> -Dmapred.child.java.opts="-Djava.library.path=./ygeo/lib
> -Dip2geo.preLoadLibraries=<some other libs>" -Djava.io.tmpdir=/grid/0/tmp -Dmapred.create.symlink=yes -Dmapred.job.map.memory.mb=3072 piggeoscript.pig
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