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Posted to dev@airavata.apache.org by priyanshu patra <pr...@gmail.com> on 2015/04/16 08:12:16 UTC
Re: Error running Airavata Server
In my case, the error occured due to a mismatch between the "
*default.registry.gateway*" in *airavata-server.properties*(initially set
to "*php_reference_gateway*")
and "*DEFAULT_GATEWAY*" in *RegisterSampleData.java*(initially set to "
*Sample*"). Setting both the values same(say to "default") resulted in
successfully registering localhost computational resource
On Tue, Mar 31, 2015 at 2:17 AM, Chathuri Wimalasena <ka...@gmail.com>
wrote:
> Hi Priyanshu,
>
> I assume you are using a freshly build airavata instance from master. I
> build airavata, start airavata server and then run registerSample.sh script
> and I'm able to register all the applications without any issue.
>
> 149-160-168-138:samples chathuri$ ./registerSample.sh
>
> /Users/chathuri/dev/airavata/source/pull/airavata/modules/distribution/server/target/apache-airavata-server-0.15-SNAPSHOT/samples/scripts
> SLF4J: Class path contains multiple SLF4J bindings.
> SLF4J: Found binding in
> [jar:file:/Users/chathuri/dev/airavata/source/pull/airavata/modules/distribution/server/target/apache-airavata-server-0.15-SNAPSHOT/lib/slf4j-log4j12-1.7.6.jar!/org/slf4j/impl/StaticLoggerBinder.class]
> SLF4J: Found binding in
> [jar:file:/Users/chathuri/dev/airavata/source/pull/airavata/modules/distribution/server/target/apache-airavata-server-0.15-SNAPSHOT/lib/slf4j-simple-1.7.6.jar!/org/slf4j/impl/StaticLoggerBinder.class]
> SLF4J: See http://www.slf4j.org/codes.html#multiple_bindings for an
> explanation.
>
> #### Registering Localhost Computational Resource ####
>
> LOCAL_01923119-2c89-4339-82d8-0f3ce5cb8110
> LocalHost Resource Id is localhost_6764410a-eeef-4cb2-b2c9-65b8616f041c
> #### Registering Application Deployments on Localhost ####
> Successfully registered Echo application on localhost, application Id =
> localhost_6764410a-eeef-4cb2-b2c9-65b8616f041c_Echo
> Successfully registered Add application on localhost, application Id =
> localhost_6764410a-eeef-4cb2-b2c9-65b8616f041c_Add
> Successfully registered Multiply application on localhost, application Id
> = localhost_6764410a-eeef-4cb2-b2c9-65b8616f041c_Multiply
> Successfully registered Subtract application on localhost, application Id
> = localhost_6764410a-eeef-4cb2-b2c9-65b8616f041c_Subtract
> Successfully registered tinker monte application on localhost, application
> Id = localhost_6764410a-eeef-4cb2-b2c9-65b8616f041c_Tinker Monte
> Successfully registered Gaussian application on localhost, application Id
> = localhost_6764410a-eeef-4cb2-b2c9-65b8616f041c_Gaussian
> #### Registering Add Application Interface ####
> Add Application Interface Id Add_e18d455d-e010-4828-8db6-2e46d15dc194
> #### Registering Subtract Application Interface ####
> Subtract Application Interface Id
> Subtract_9e5ca490-a450-42b9-8b42-e641e23bae5f
> #### Registering Multiply Application Interface ####
> Multiply Application Interface Id
> Multiply_3b5ac2d0-48a0-4174-835f-4914842afc72
> #### Registering Echo Interface ####
> Echo Application Interface Id Echo_93fee88f-5ea5-48f8-9a1f-b938342ef851
> #### Registering Tinker Monte Application Interface ####
> Monte Application Interface Id
> Tinker_Monte_f7d8fcdd-62a9-4be6-a6d0-cf870a6972a4
> #### Registering Gaussian Application Interface ####
> Gaussian Application Interface Id
> Gaussian_ae51b454-fec7-4356-a8b3-c0c15222f7b2
>
> On Mon, Mar 30, 2015 at 1:13 PM, priyanshu patra <pr...@gmail.com>
> wrote:
>
>> Hi Chathuri,
>>
>> On registring sample scripts and local host by running sh
>> registerSample.sh(or ./registerSample.sh) following
>> https://cwiki.apache.org/confluence/display/AIRAVATA/XBAYA+Quick-Start+Tutorial (Step
>> 10), I get the following error
>> Exception in thread "main"
>> AiravataSystemException(airavataErrorType:INTERNAL_ERROR)
>> at
>> org.apache.airavata.api.Airavata$registerGatewayResourceProfile_result$registerGatewayResourceProfile_resultStandardScheme.read(Airavata.java)
>> at
>> org.apache.airavata.api.Airavata$registerGatewayResourceProfile_result$registerGatewayResourceProfile_resultStandardScheme.read(Airavata.java)
>> at
>> org.apache.airavata.api.Airavata$registerGatewayResourceProfile_result.read(Airavata.java)
>> at org.apache.thrift.TServiceClient.receiveBase(TServiceClient.java:78)
>> at
>> org.apache.airavata.api.Airavata$Client.recv_registerGatewayResourceProfile(Airavata.java:5017)
>> at
>> org.apache.airavata.api.Airavata$Client.registerGatewayResourceProfile(Airavata.java:5004)
>> at
>> org.apache.airavata.client.samples.RegisterSampleData.registerGatewayProfile(RegisterSampleData.java:93)
>> at
>> org.apache.airavata.client.samples.RegisterSampleData.register(RegisterSampleData.java:81)
>> at
>> org.apache.airavata.client.samples.RegisterSampleData.main(RegisterSampleData.java:64)
>>
>> and the main server running throws the following error simultaneously
>> [ERROR] Gateway does not exist.Please provide a valid gateway id...
>>
>> Can you please tell me why is it so?
>>
>> Thanks
>>
>>
>>
>> On Fri, Mar 27, 2015 at 10:26 PM, Chathuri Wimalasena <
>> kamalasini@gmail.com> wrote:
>>
>>> Hi Priyanshu,
>>>
>>> Please refer this.
>>> https://cwiki.apache.org/confluence/display/AIRAVATA/XBAYA+Quick-Start+Tutorial.
>>> The document that you refer is out of date. For OutOfMemoryError error,
>>> you can increase heap memory using JAVA_OPTS (export set
>>> JAVA_OPTS=”-Xms256m -Xmx512m).
>>>
>>> Thanks..
>>> Chathuri
>>>
>>> On Fri, Mar 27, 2015 at 12:50 PM, priyanshu patra <pr...@gmail.com>
>>> wrote:
>>>
>>>> Hello Supun,
>>>>
>>>> Sir, now I am able to run the server but it throws OutOfMemoryError
>>>> [ERROR] Thread Thread[pool-4-thread-5,5,main] died
>>>> java.lang.OutOfMemoryError: Java heap space
>>>> at
>>>> org.apache.thrift.protocol.TBinaryProtocol.readStringBody(TBinaryProtocol.java:339)
>>>> at
>>>> org.apache.thrift.protocol.TBinaryProtocol.readMessageBegin(TBinaryProtocol.java:202)
>>>> at org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:27)
>>>> at
>>>> org.apache.thrift.server.TThreadPoolServer$WorkerProcess.run(TThreadPoolServer.java:225)
>>>> at
>>>> java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
>>>> at
>>>> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
>>>> at java.lang.Thread.run(Thread.java:745)
>>>>
>>>> Morover, the server doesn't run on port 8080 as mentioned in Quick
>>>> Start Tutorials
>>>> <https://airavata.apache.org/documentation/quickstart-tutorials.html>
>>>> .
>>>> [INFO] Starting Orchestrator Server on Port 8940
>>>> [INFO] Starting Gfac Server on Port 8950
>>>>
>>>> Which of these should I use as Server Port to setup Airavata Registry
>>>> in XBaya Dashboard.
>>>>
>>>> Thanks,
>>>> Priyanshu
>>>>
>>>>
>>>> On Fri, Mar 27, 2015 at 1:02 PM, Supun Nakandala <
>>>> supun.nakandala@gmail.com> wrote:
>>>>
>>>>> Hi Priyanshu,
>>>>>
>>>>> If you want to run the binaries that you build from maven do as
>>>>> follows.
>>>>>
>>>>> 1. Go to $HOME/gsoc/airavata/modules/distribution/server/target
>>>>> 2. There you will find a *.tar.gz and .zip distributions extract one
>>>>> of your choice
>>>>> 3. Inside the extracted folder you will find the bin folder. Go to
>>>>> that folder and run ./airavata-server.sh (start - to run in daemon mode)
>>>>>
>>>>> To run XBaya
>>>>> 1. Go to $HOME/gsoc/airavata/modules/distribution/xbaya-gui/target and
>>>>> follow steps similar to the previous one
>>>>>
>>>>> -Supun
>>>>>
>>>>> On Fri, Mar 27, 2015 at 12:50 PM, priyanshu patra <pri.patra@gmail.com
>>>>> > wrote:
>>>>>
>>>>>> Hi everyone,
>>>>>>
>>>>>> After building distribution source following build from source
>>>>>> <https://airavata.apache.org/development/build.html> , I followed
>>>>>> the steps here Quick Tutorials
>>>>>> <https://airavata.apache.org/documentation/quickstart-tutorials.html> to
>>>>>> start Airavata Server and Launch GUI.
>>>>>> The server and GUI work fine when I download the binaries from Downloads
>>>>>> page <https://airavata.apache.org/about/downloads.html> ,extract the
>>>>>> distributions, and run *airavata-server.sh* (or *xbaya-gui.sh*)
>>>>>>
>>>>>> But here is what happens when I try to do the same using binaries
>>>>>> generated from source
>>>>>> running
>>>>>>
>>>>>> - $AIRAVATA_SERVER_HOME/bin/airavata-server.sh
>>>>>>
>>>>>> throws the following error-
>>>>>> Error: Could not find or load main class
>>>>>> org.apache.airavata.server.ServerMain
>>>>>> and running the same with sudo throws-
>>>>>> You must set the JAVA_HOME variable before running Airavata Scripts.
>>>>>>
>>>>>> I setup the following in *.bashrc* file
>>>>>> export AIRAVATA_XBAYA_HOME=
>>>>>> $HOME/gsoc/airavata/modules/distribution/xbaya-gui/src/main/resources
>>>>>>
>>>>>> export AIRAVATA_SERVER_HOME=
>>>>>> $HOME/gsoc/airavata/modules/distribution/server/src/main/resources
>>>>>>
>>>>>> export JAVA_HOME=/usr/lib/jvm/java-8-openjdk-amd64
>>>>>> export PATH=$PATH:$JAVA_HOME/bin
>>>>>>
>>>>>> Can anyone pointt me in which step did I go wrong.
>>>>>>
>>>>>> Thanks,
>>>>>> Priyanshu
>>>>>>
>>>>>
>>>>>
>>>>>
>>>>> --
>>>>> Thank you
>>>>> Supun Nakandala
>>>>> Dept. Computer Science and Engineering
>>>>> University of Moratuwa
>>>>>
>>>>
>>>>
>>>
>>
>
Re: [SciGaP-Project] How to get experiment output?
Posted by "Marru, Suresh" <sm...@iu.edu>.
Hi Kenneth,
Sorry we dropped the ball on this one. We will look into your errors and get back.
Suresh
> On Apr 29, 2015, at 12:23 PM, K Yoshimoto <ke...@sdsc.edu> wrote:
>
>
> The test-drive sdsc portal is still failing. Now, I can't
> even look at old successful expermients. The error is:
>
> Allowed memory size of 134217728 bytes exhausted (tried to allocate 184549633 bytes)
>
>
> On Wed, Apr 22, 2015 at 10:10:05AM -0700, K Yoshimoto wrote:
>>
>> Just following up on this failure. I'm going to cc scigap list
>> also.
>>
>> Kenneth
>>
>> On Fri, Apr 17, 2015 at 11:19:33AM -0700, K Yoshimoto wrote:
>>>
>>> Hi Nipurn,
>>>
>>> The Echo example works for me now. I can see STDOUT when
>>> the job is completed. Do you have a commandline client example
>>> of retrieving this? Java client call is fine, Python is better.
>>>
>>> I am running into a problem running a test experiment of my own.
>>>
>>> Is there a way to get the full stack trace or other logs?
>>>
>>> I get the following error output:
>>> http://dev.test-drive.airavata.org/portal/sdsc/public/experiment/summary?expId=shelltest_9041c4bd-5af4-4485-bfe5-1baa062ce664
>>>
>>> Compute resource trestles-login2.sdsc.edu
>>> Experiment Status FAILED
>>> Job Status SETUP
>>> Creation time 2015-04-17 18:15:06
>>> Update time 2015-04-17 18:15:10
>>> Inputs
>>>
>>> arg1: -c
>>>
>>> arg2: /bin/hostname
>>> Outputs Experiment hasn't completed. Experiment Status is : FAILED
>>> Errors Error while initializing provider org.apache.airavata.gfac.ssh.provider.impl.SSHProvider.
>>>
>>> Kenneth
>>>
>>> On Fri, Apr 17, 2015 at 11:11:00AM -0400, Nipurn Doshi wrote:
>>>> Hi Kenneth,
>>>>
>>>> The issue is resolved. You can now use -
>>>> http://dev.test-drive.airavata.org/portal/sdsc/public/
>>>> We ran several echo jobs and all seem to be good.
>>>>
>>>>
>>>>
>>>> On Thu, Apr 16, 2015 at 9:31 PM, Chathuri Wimalasena <ka...@gmail.com>
>>>> wrote:
>>>>
>>>>> Dev PGA should be working now Kenneth.
>>>>>
>>>>> On Thu, Apr 16, 2015 at 5:46 PM, K Yoshimoto <ke...@sdsc.edu> wrote:
>>>>>
>>>>>>
>>>>>> Nipurn,
>>>>>>
>>>>>> Thanks for looking into this. Please send an email update
>>>>>> to the list when it's good to try again.
>>>>>>
>>>>>> Kenneth
>>>>>>
>>>>>> On Thu, Apr 16, 2015 at 05:42:01PM -0400, Nipurn Doshi wrote:
>>>>>>> Hi Kenneth,
>>>>>>>
>>>>>>> We figured out the errors and found out that some of the old PGA code
>>>>>>> hadn't made their way to the commits.
>>>>>>> Although, we fixed them, right now we are facing the issue of
>>>>>> Experiments
>>>>>>> not launching on SDSC Dev Portal. The problem looks trivial and we hope
>>>>>> to
>>>>>>> fix it by either today evening or max tomorrow morning.
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> On Thu, Apr 16, 2015 at 4:03 PM, Nipurn Doshi <ni...@umail.iu.edu>
>>>>>> wrote:
>>>>>>>
>>>>>>>> We checked and this error exists in sdsc portal. We will report as
>>>>>> soon as
>>>>>>>> the bug is fixed.
>>>>>>>>
>>>>>>>>
>>>>>>>> On Thu, Apr 16, 2015 at 3:33 PM, K Yoshimoto <ke...@sdsc.edu>
>>>>>> wrote:
>>>>>>>>
>>>>>>>>>
>>>>>>>>> My Experiment Summary does not have STDOUT and STDERR links,
>>>>>>>>> rather it just has this text:
>>>>>>>>>
>>>>>>>>> Outputs Experiment hasn't completed. Experiment Status is :
>>>>>>>>> COMPLETED
>>>>>>>>>
>>>>>>>>> Is there someone who can investigate this experiment?
>>>>>>>>>
>>>>>>>>>
>>>>>> http://dev.test-drive.airavata.org/portal/sdsc/public/experiment/summary?expId=shelltest_4f04d8a7-85a8-4ae4-aa07-f9e6dce7c016
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> On Thu, Apr 16, 2015 at 03:27:27PM -0400, Eroma Abeysinghe wrote:
>>>>>>>>>> Hi Kenneth,
>>>>>>>>>>
>>>>>>>>>> If the experiment is completed successfully; should be able to
>>>>>> click on
>>>>>>>>> the
>>>>>>>>>> STDOUT link and view the output.
>>>>>>>>>> Please see the attached image
>>>>>>>>>>
>>>>>>>>>> Hope this helps
>>>>>>>>>>
>>>>>>>>>> Thanks,
>>>>>>>>>> Eroma
>>>>>>>>>>
>>>>>>>>>> On Thu, Apr 16, 2015 at 3:13 PM, K Yoshimoto <ke...@sdsc.edu>
>>>>>> wrote:
>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>> Thanks, Eroma.
>>>>>>>>>>>
>>>>>>>>>>> I see the Experiment Summary for this experiment. There is
>>>>>>>>>>> no STDOUT field. This is for the echo experiment. There is
>>>>>>>>>>> an Outputs field:
>>>>>>>>>>>
>>>>>>>>>>> Outputs Experiment hasn't completed. Experiment Status
>>>>>> is :
>>>>>>>>>>> COMPLETED
>>>>>>>>>>>
>>>>>>>>>>> Kenneth
>>>>>>>>>>>
>>>>>>>>>>> On Thu, Apr 16, 2015 at 03:08:50PM -0400, Eroma Abeysinghe wrote:
>>>>>>>>>>>> Hi Kenneth,
>>>>>>>>>>>>
>>>>>>>>>>>> If you are using the portal (
>>>>>>>>> http://dev.test-drive.airavata.org/portal)
>>>>>>>>>>>> you can view the output in STDOUT
>>>>>>>>>>>>
>>>>>>>>>>>> For this search for the experiment (Main Menu --> Experiment
>>>>>> -->
>>>>>>>>> Search
>>>>>>>>>>>> Page) and STDOUT is in the Experiment Summary Page
>>>>>>>>>>>>
>>>>>>>>>>>> Hope this helps
>>>>>>>>>>>>
>>>>>>>>>>>> Thanks,
>>>>>>>>>>>> Eroma
>>>>>>>>>>>>
>>>>>>>>>>>> On Thu, Apr 16, 2015 at 2:33 PM, K Yoshimoto <kenneth@sdsc.edu
>>>>>>>
>>>>>>>>> wrote:
>>>>>>>>>>>>
>>>>>>>>>>>>>
>>>>>>>>>>>>> I am able to run the echo application in an experiment on
>>>>>>>>>>>>> the test-drive portal. How do I get the output from the
>>>>>>>>>>>>> experiment?
>>>>>>>>>>>>>
>>>>>>>>>>>>> Kenneth
>>>>>>>>>>>>>
>>>>>>>>>>>>>
>>>>>>>>>>>>
>>>>>>>>>>>>
>>>>>>>>>>>> --
>>>>>>>>>>>> Thank You,
>>>>>>>>>>>> Best Regards,
>>>>>>>>>>>> Eroma
>>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>> --
>>>>>>>>>> Thank You,
>>>>>>>>>> Best Regards,
>>>>>>>>>> Eroma
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>> --
>>>>>>>> -Sincerely,
>>>>>>>> Nipurn Doshi
>>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> --
>>>>>>> -Sincerely,
>>>>>>> Nipurn Doshi
>>>>>>
>>>>>
>>>>>
>>>>
>>>>
>>>> --
>>>> -Sincerely,
>>>> Nipurn Doshi
>
> To unsubscribe from this group and stop receiving emails from it, send an email to project+unsubscribe@scigap.org.
Re: How to get experiment output?
Posted by K Yoshimoto <ke...@sdsc.edu>.
The test-drive sdsc portal is still failing. Now, I can't
even look at old successful expermients. The error is:
Allowed memory size of 134217728 bytes exhausted (tried to allocate 184549633 bytes)
On Wed, Apr 22, 2015 at 10:10:05AM -0700, K Yoshimoto wrote:
>
> Just following up on this failure. I'm going to cc scigap list
> also.
>
> Kenneth
>
> On Fri, Apr 17, 2015 at 11:19:33AM -0700, K Yoshimoto wrote:
> >
> > Hi Nipurn,
> >
> > The Echo example works for me now. I can see STDOUT when
> > the job is completed. Do you have a commandline client example
> > of retrieving this? Java client call is fine, Python is better.
> >
> > I am running into a problem running a test experiment of my own.
> >
> > Is there a way to get the full stack trace or other logs?
> >
> > I get the following error output:
> > http://dev.test-drive.airavata.org/portal/sdsc/public/experiment/summary?expId=shelltest_9041c4bd-5af4-4485-bfe5-1baa062ce664
> >
> > Compute resource trestles-login2.sdsc.edu
> > Experiment Status FAILED
> > Job Status SETUP
> > Creation time 2015-04-17 18:15:06
> > Update time 2015-04-17 18:15:10
> > Inputs
> >
> > arg1: -c
> >
> > arg2: /bin/hostname
> > Outputs Experiment hasn't completed. Experiment Status is : FAILED
> > Errors Error while initializing provider org.apache.airavata.gfac.ssh.provider.impl.SSHProvider.
> >
> > Kenneth
> >
> > On Fri, Apr 17, 2015 at 11:11:00AM -0400, Nipurn Doshi wrote:
> > > Hi Kenneth,
> > >
> > > The issue is resolved. You can now use -
> > > http://dev.test-drive.airavata.org/portal/sdsc/public/
> > > We ran several echo jobs and all seem to be good.
> > >
> > >
> > >
> > > On Thu, Apr 16, 2015 at 9:31 PM, Chathuri Wimalasena <ka...@gmail.com>
> > > wrote:
> > >
> > > > Dev PGA should be working now Kenneth.
> > > >
> > > > On Thu, Apr 16, 2015 at 5:46 PM, K Yoshimoto <ke...@sdsc.edu> wrote:
> > > >
> > > >>
> > > >> Nipurn,
> > > >>
> > > >> Thanks for looking into this. Please send an email update
> > > >> to the list when it's good to try again.
> > > >>
> > > >> Kenneth
> > > >>
> > > >> On Thu, Apr 16, 2015 at 05:42:01PM -0400, Nipurn Doshi wrote:
> > > >> > Hi Kenneth,
> > > >> >
> > > >> > We figured out the errors and found out that some of the old PGA code
> > > >> > hadn't made their way to the commits.
> > > >> > Although, we fixed them, right now we are facing the issue of
> > > >> Experiments
> > > >> > not launching on SDSC Dev Portal. The problem looks trivial and we hope
> > > >> to
> > > >> > fix it by either today evening or max tomorrow morning.
> > > >> >
> > > >> >
> > > >> >
> > > >> > On Thu, Apr 16, 2015 at 4:03 PM, Nipurn Doshi <ni...@umail.iu.edu>
> > > >> wrote:
> > > >> >
> > > >> > > We checked and this error exists in sdsc portal. We will report as
> > > >> soon as
> > > >> > > the bug is fixed.
> > > >> > >
> > > >> > >
> > > >> > > On Thu, Apr 16, 2015 at 3:33 PM, K Yoshimoto <ke...@sdsc.edu>
> > > >> wrote:
> > > >> > >
> > > >> > >>
> > > >> > >> My Experiment Summary does not have STDOUT and STDERR links,
> > > >> > >> rather it just has this text:
> > > >> > >>
> > > >> > >> Outputs Experiment hasn't completed. Experiment Status is :
> > > >> > >> COMPLETED
> > > >> > >>
> > > >> > >> Is there someone who can investigate this experiment?
> > > >> > >>
> > > >> > >>
> > > >> http://dev.test-drive.airavata.org/portal/sdsc/public/experiment/summary?expId=shelltest_4f04d8a7-85a8-4ae4-aa07-f9e6dce7c016
> > > >> > >>
> > > >> > >>
> > > >> > >> On Thu, Apr 16, 2015 at 03:27:27PM -0400, Eroma Abeysinghe wrote:
> > > >> > >> > Hi Kenneth,
> > > >> > >> >
> > > >> > >> > If the experiment is completed successfully; should be able to
> > > >> click on
> > > >> > >> the
> > > >> > >> > STDOUT link and view the output.
> > > >> > >> > Please see the attached image
> > > >> > >> >
> > > >> > >> > Hope this helps
> > > >> > >> >
> > > >> > >> > Thanks,
> > > >> > >> > Eroma
> > > >> > >> >
> > > >> > >> > On Thu, Apr 16, 2015 at 3:13 PM, K Yoshimoto <ke...@sdsc.edu>
> > > >> wrote:
> > > >> > >> >
> > > >> > >> > >
> > > >> > >> > > Thanks, Eroma.
> > > >> > >> > >
> > > >> > >> > > I see the Experiment Summary for this experiment. There is
> > > >> > >> > > no STDOUT field. This is for the echo experiment. There is
> > > >> > >> > > an Outputs field:
> > > >> > >> > >
> > > >> > >> > > Outputs Experiment hasn't completed. Experiment Status
> > > >> is :
> > > >> > >> > > COMPLETED
> > > >> > >> > >
> > > >> > >> > > Kenneth
> > > >> > >> > >
> > > >> > >> > > On Thu, Apr 16, 2015 at 03:08:50PM -0400, Eroma Abeysinghe wrote:
> > > >> > >> > > > Hi Kenneth,
> > > >> > >> > > >
> > > >> > >> > > > If you are using the portal (
> > > >> > >> http://dev.test-drive.airavata.org/portal)
> > > >> > >> > > > you can view the output in STDOUT
> > > >> > >> > > >
> > > >> > >> > > > For this search for the experiment (Main Menu --> Experiment
> > > >> -->
> > > >> > >> Search
> > > >> > >> > > > Page) and STDOUT is in the Experiment Summary Page
> > > >> > >> > > >
> > > >> > >> > > > Hope this helps
> > > >> > >> > > >
> > > >> > >> > > > Thanks,
> > > >> > >> > > > Eroma
> > > >> > >> > > >
> > > >> > >> > > > On Thu, Apr 16, 2015 at 2:33 PM, K Yoshimoto <kenneth@sdsc.edu
> > > >> >
> > > >> > >> wrote:
> > > >> > >> > > >
> > > >> > >> > > > >
> > > >> > >> > > > > I am able to run the echo application in an experiment on
> > > >> > >> > > > > the test-drive portal. How do I get the output from the
> > > >> > >> > > > > experiment?
> > > >> > >> > > > >
> > > >> > >> > > > > Kenneth
> > > >> > >> > > > >
> > > >> > >> > > > >
> > > >> > >> > > >
> > > >> > >> > > >
> > > >> > >> > > > --
> > > >> > >> > > > Thank You,
> > > >> > >> > > > Best Regards,
> > > >> > >> > > > Eroma
> > > >> > >> > >
> > > >> > >> >
> > > >> > >> >
> > > >> > >> >
> > > >> > >> > --
> > > >> > >> > Thank You,
> > > >> > >> > Best Regards,
> > > >> > >> > Eroma
> > > >> > >>
> > > >> > >>
> > > >> > >>
> > > >> > >
> > > >> > >
> > > >> > > --
> > > >> > > -Sincerely,
> > > >> > > Nipurn Doshi
> > > >> > >
> > > >> >
> > > >> >
> > > >> >
> > > >> > --
> > > >> > -Sincerely,
> > > >> > Nipurn Doshi
> > > >>
> > > >
> > > >
> > >
> > >
> > > --
> > > -Sincerely,
> > > Nipurn Doshi
trestles experiment launch fails with UNKNOWN Job Status
Posted by K Yoshimoto <ke...@sdsc.edu>.
I'm getting failed experiment launches with the echo app on
test-drive:
http://dev.test-drive.airavata.org/portal/sdsc/public/experiment/summary?expId=Cloneofechotest_b853cfea-d809-4f78-b893-14643e5edbc3
Job Status is UNKNOWN, and I don't see a job in the trestles queue.
Outputs says,"Experiment hasn't completed. Experiment Status is : LAUNCHED"
Re: How to get experiment output?
Posted by K Yoshimoto <ke...@sdsc.edu>.
Just following up on this failure. I'm going to cc scigap list
also.
Kenneth
On Fri, Apr 17, 2015 at 11:19:33AM -0700, K Yoshimoto wrote:
>
> Hi Nipurn,
>
> The Echo example works for me now. I can see STDOUT when
> the job is completed. Do you have a commandline client example
> of retrieving this? Java client call is fine, Python is better.
>
> I am running into a problem running a test experiment of my own.
>
> Is there a way to get the full stack trace or other logs?
>
> I get the following error output:
> http://dev.test-drive.airavata.org/portal/sdsc/public/experiment/summary?expId=shelltest_9041c4bd-5af4-4485-bfe5-1baa062ce664
>
> Compute resource trestles-login2.sdsc.edu
> Experiment Status FAILED
> Job Status SETUP
> Creation time 2015-04-17 18:15:06
> Update time 2015-04-17 18:15:10
> Inputs
>
> arg1: -c
>
> arg2: /bin/hostname
> Outputs Experiment hasn't completed. Experiment Status is : FAILED
> Errors Error while initializing provider org.apache.airavata.gfac.ssh.provider.impl.SSHProvider.
>
> Kenneth
>
> On Fri, Apr 17, 2015 at 11:11:00AM -0400, Nipurn Doshi wrote:
> > Hi Kenneth,
> >
> > The issue is resolved. You can now use -
> > http://dev.test-drive.airavata.org/portal/sdsc/public/
> > We ran several echo jobs and all seem to be good.
> >
> >
> >
> > On Thu, Apr 16, 2015 at 9:31 PM, Chathuri Wimalasena <ka...@gmail.com>
> > wrote:
> >
> > > Dev PGA should be working now Kenneth.
> > >
> > > On Thu, Apr 16, 2015 at 5:46 PM, K Yoshimoto <ke...@sdsc.edu> wrote:
> > >
> > >>
> > >> Nipurn,
> > >>
> > >> Thanks for looking into this. Please send an email update
> > >> to the list when it's good to try again.
> > >>
> > >> Kenneth
> > >>
> > >> On Thu, Apr 16, 2015 at 05:42:01PM -0400, Nipurn Doshi wrote:
> > >> > Hi Kenneth,
> > >> >
> > >> > We figured out the errors and found out that some of the old PGA code
> > >> > hadn't made their way to the commits.
> > >> > Although, we fixed them, right now we are facing the issue of
> > >> Experiments
> > >> > not launching on SDSC Dev Portal. The problem looks trivial and we hope
> > >> to
> > >> > fix it by either today evening or max tomorrow morning.
> > >> >
> > >> >
> > >> >
> > >> > On Thu, Apr 16, 2015 at 4:03 PM, Nipurn Doshi <ni...@umail.iu.edu>
> > >> wrote:
> > >> >
> > >> > > We checked and this error exists in sdsc portal. We will report as
> > >> soon as
> > >> > > the bug is fixed.
> > >> > >
> > >> > >
> > >> > > On Thu, Apr 16, 2015 at 3:33 PM, K Yoshimoto <ke...@sdsc.edu>
> > >> wrote:
> > >> > >
> > >> > >>
> > >> > >> My Experiment Summary does not have STDOUT and STDERR links,
> > >> > >> rather it just has this text:
> > >> > >>
> > >> > >> Outputs Experiment hasn't completed. Experiment Status is :
> > >> > >> COMPLETED
> > >> > >>
> > >> > >> Is there someone who can investigate this experiment?
> > >> > >>
> > >> > >>
> > >> http://dev.test-drive.airavata.org/portal/sdsc/public/experiment/summary?expId=shelltest_4f04d8a7-85a8-4ae4-aa07-f9e6dce7c016
> > >> > >>
> > >> > >>
> > >> > >> On Thu, Apr 16, 2015 at 03:27:27PM -0400, Eroma Abeysinghe wrote:
> > >> > >> > Hi Kenneth,
> > >> > >> >
> > >> > >> > If the experiment is completed successfully; should be able to
> > >> click on
> > >> > >> the
> > >> > >> > STDOUT link and view the output.
> > >> > >> > Please see the attached image
> > >> > >> >
> > >> > >> > Hope this helps
> > >> > >> >
> > >> > >> > Thanks,
> > >> > >> > Eroma
> > >> > >> >
> > >> > >> > On Thu, Apr 16, 2015 at 3:13 PM, K Yoshimoto <ke...@sdsc.edu>
> > >> wrote:
> > >> > >> >
> > >> > >> > >
> > >> > >> > > Thanks, Eroma.
> > >> > >> > >
> > >> > >> > > I see the Experiment Summary for this experiment. There is
> > >> > >> > > no STDOUT field. This is for the echo experiment. There is
> > >> > >> > > an Outputs field:
> > >> > >> > >
> > >> > >> > > Outputs Experiment hasn't completed. Experiment Status
> > >> is :
> > >> > >> > > COMPLETED
> > >> > >> > >
> > >> > >> > > Kenneth
> > >> > >> > >
> > >> > >> > > On Thu, Apr 16, 2015 at 03:08:50PM -0400, Eroma Abeysinghe wrote:
> > >> > >> > > > Hi Kenneth,
> > >> > >> > > >
> > >> > >> > > > If you are using the portal (
> > >> > >> http://dev.test-drive.airavata.org/portal)
> > >> > >> > > > you can view the output in STDOUT
> > >> > >> > > >
> > >> > >> > > > For this search for the experiment (Main Menu --> Experiment
> > >> -->
> > >> > >> Search
> > >> > >> > > > Page) and STDOUT is in the Experiment Summary Page
> > >> > >> > > >
> > >> > >> > > > Hope this helps
> > >> > >> > > >
> > >> > >> > > > Thanks,
> > >> > >> > > > Eroma
> > >> > >> > > >
> > >> > >> > > > On Thu, Apr 16, 2015 at 2:33 PM, K Yoshimoto <kenneth@sdsc.edu
> > >> >
> > >> > >> wrote:
> > >> > >> > > >
> > >> > >> > > > >
> > >> > >> > > > > I am able to run the echo application in an experiment on
> > >> > >> > > > > the test-drive portal. How do I get the output from the
> > >> > >> > > > > experiment?
> > >> > >> > > > >
> > >> > >> > > > > Kenneth
> > >> > >> > > > >
> > >> > >> > > > >
> > >> > >> > > >
> > >> > >> > > >
> > >> > >> > > > --
> > >> > >> > > > Thank You,
> > >> > >> > > > Best Regards,
> > >> > >> > > > Eroma
> > >> > >> > >
> > >> > >> >
> > >> > >> >
> > >> > >> >
> > >> > >> > --
> > >> > >> > Thank You,
> > >> > >> > Best Regards,
> > >> > >> > Eroma
> > >> > >>
> > >> > >>
> > >> > >>
> > >> > >
> > >> > >
> > >> > > --
> > >> > > -Sincerely,
> > >> > > Nipurn Doshi
> > >> > >
> > >> >
> > >> >
> > >> >
> > >> > --
> > >> > -Sincerely,
> > >> > Nipurn Doshi
> > >>
> > >
> > >
> >
> >
> > --
> > -Sincerely,
> > Nipurn Doshi
Re: How to get experiment output?
Posted by K Yoshimoto <ke...@sdsc.edu>.
Hi Nipurn,
The Echo example works for me now. I can see STDOUT when
the job is completed. Do you have a commandline client example
of retrieving this? Java client call is fine, Python is better.
I am running into a problem running a test experiment of my own.
Is there a way to get the full stack trace or other logs?
I get the following error output:
http://dev.test-drive.airavata.org/portal/sdsc/public/experiment/summary?expId=shelltest_9041c4bd-5af4-4485-bfe5-1baa062ce664
Compute resource trestles-login2.sdsc.edu
Experiment Status FAILED
Job Status SETUP
Creation time 2015-04-17 18:15:06
Update time 2015-04-17 18:15:10
Inputs
arg1: -c
arg2: /bin/hostname
Outputs Experiment hasn't completed. Experiment Status is : FAILED
Errors Error while initializing provider org.apache.airavata.gfac.ssh.provider.impl.SSHProvider.
Kenneth
On Fri, Apr 17, 2015 at 11:11:00AM -0400, Nipurn Doshi wrote:
> Hi Kenneth,
>
> The issue is resolved. You can now use -
> http://dev.test-drive.airavata.org/portal/sdsc/public/
> We ran several echo jobs and all seem to be good.
>
>
>
> On Thu, Apr 16, 2015 at 9:31 PM, Chathuri Wimalasena <ka...@gmail.com>
> wrote:
>
> > Dev PGA should be working now Kenneth.
> >
> > On Thu, Apr 16, 2015 at 5:46 PM, K Yoshimoto <ke...@sdsc.edu> wrote:
> >
> >>
> >> Nipurn,
> >>
> >> Thanks for looking into this. Please send an email update
> >> to the list when it's good to try again.
> >>
> >> Kenneth
> >>
> >> On Thu, Apr 16, 2015 at 05:42:01PM -0400, Nipurn Doshi wrote:
> >> > Hi Kenneth,
> >> >
> >> > We figured out the errors and found out that some of the old PGA code
> >> > hadn't made their way to the commits.
> >> > Although, we fixed them, right now we are facing the issue of
> >> Experiments
> >> > not launching on SDSC Dev Portal. The problem looks trivial and we hope
> >> to
> >> > fix it by either today evening or max tomorrow morning.
> >> >
> >> >
> >> >
> >> > On Thu, Apr 16, 2015 at 4:03 PM, Nipurn Doshi <ni...@umail.iu.edu>
> >> wrote:
> >> >
> >> > > We checked and this error exists in sdsc portal. We will report as
> >> soon as
> >> > > the bug is fixed.
> >> > >
> >> > >
> >> > > On Thu, Apr 16, 2015 at 3:33 PM, K Yoshimoto <ke...@sdsc.edu>
> >> wrote:
> >> > >
> >> > >>
> >> > >> My Experiment Summary does not have STDOUT and STDERR links,
> >> > >> rather it just has this text:
> >> > >>
> >> > >> Outputs Experiment hasn't completed. Experiment Status is :
> >> > >> COMPLETED
> >> > >>
> >> > >> Is there someone who can investigate this experiment?
> >> > >>
> >> > >>
> >> http://dev.test-drive.airavata.org/portal/sdsc/public/experiment/summary?expId=shelltest_4f04d8a7-85a8-4ae4-aa07-f9e6dce7c016
> >> > >>
> >> > >>
> >> > >> On Thu, Apr 16, 2015 at 03:27:27PM -0400, Eroma Abeysinghe wrote:
> >> > >> > Hi Kenneth,
> >> > >> >
> >> > >> > If the experiment is completed successfully; should be able to
> >> click on
> >> > >> the
> >> > >> > STDOUT link and view the output.
> >> > >> > Please see the attached image
> >> > >> >
> >> > >> > Hope this helps
> >> > >> >
> >> > >> > Thanks,
> >> > >> > Eroma
> >> > >> >
> >> > >> > On Thu, Apr 16, 2015 at 3:13 PM, K Yoshimoto <ke...@sdsc.edu>
> >> wrote:
> >> > >> >
> >> > >> > >
> >> > >> > > Thanks, Eroma.
> >> > >> > >
> >> > >> > > I see the Experiment Summary for this experiment. There is
> >> > >> > > no STDOUT field. This is for the echo experiment. There is
> >> > >> > > an Outputs field:
> >> > >> > >
> >> > >> > > Outputs Experiment hasn't completed. Experiment Status
> >> is :
> >> > >> > > COMPLETED
> >> > >> > >
> >> > >> > > Kenneth
> >> > >> > >
> >> > >> > > On Thu, Apr 16, 2015 at 03:08:50PM -0400, Eroma Abeysinghe wrote:
> >> > >> > > > Hi Kenneth,
> >> > >> > > >
> >> > >> > > > If you are using the portal (
> >> > >> http://dev.test-drive.airavata.org/portal)
> >> > >> > > > you can view the output in STDOUT
> >> > >> > > >
> >> > >> > > > For this search for the experiment (Main Menu --> Experiment
> >> -->
> >> > >> Search
> >> > >> > > > Page) and STDOUT is in the Experiment Summary Page
> >> > >> > > >
> >> > >> > > > Hope this helps
> >> > >> > > >
> >> > >> > > > Thanks,
> >> > >> > > > Eroma
> >> > >> > > >
> >> > >> > > > On Thu, Apr 16, 2015 at 2:33 PM, K Yoshimoto <kenneth@sdsc.edu
> >> >
> >> > >> wrote:
> >> > >> > > >
> >> > >> > > > >
> >> > >> > > > > I am able to run the echo application in an experiment on
> >> > >> > > > > the test-drive portal. How do I get the output from the
> >> > >> > > > > experiment?
> >> > >> > > > >
> >> > >> > > > > Kenneth
> >> > >> > > > >
> >> > >> > > > >
> >> > >> > > >
> >> > >> > > >
> >> > >> > > > --
> >> > >> > > > Thank You,
> >> > >> > > > Best Regards,
> >> > >> > > > Eroma
> >> > >> > >
> >> > >> >
> >> > >> >
> >> > >> >
> >> > >> > --
> >> > >> > Thank You,
> >> > >> > Best Regards,
> >> > >> > Eroma
> >> > >>
> >> > >>
> >> > >>
> >> > >
> >> > >
> >> > > --
> >> > > -Sincerely,
> >> > > Nipurn Doshi
> >> > >
> >> >
> >> >
> >> >
> >> > --
> >> > -Sincerely,
> >> > Nipurn Doshi
> >>
> >
> >
>
>
> --
> -Sincerely,
> Nipurn Doshi
Re: How to get experiment output?
Posted by Nipurn Doshi <ni...@umail.iu.edu>.
Hi Kenneth,
The issue is resolved. You can now use -
http://dev.test-drive.airavata.org/portal/sdsc/public/
We ran several echo jobs and all seem to be good.
On Thu, Apr 16, 2015 at 9:31 PM, Chathuri Wimalasena <ka...@gmail.com>
wrote:
> Dev PGA should be working now Kenneth.
>
> On Thu, Apr 16, 2015 at 5:46 PM, K Yoshimoto <ke...@sdsc.edu> wrote:
>
>>
>> Nipurn,
>>
>> Thanks for looking into this. Please send an email update
>> to the list when it's good to try again.
>>
>> Kenneth
>>
>> On Thu, Apr 16, 2015 at 05:42:01PM -0400, Nipurn Doshi wrote:
>> > Hi Kenneth,
>> >
>> > We figured out the errors and found out that some of the old PGA code
>> > hadn't made their way to the commits.
>> > Although, we fixed them, right now we are facing the issue of
>> Experiments
>> > not launching on SDSC Dev Portal. The problem looks trivial and we hope
>> to
>> > fix it by either today evening or max tomorrow morning.
>> >
>> >
>> >
>> > On Thu, Apr 16, 2015 at 4:03 PM, Nipurn Doshi <ni...@umail.iu.edu>
>> wrote:
>> >
>> > > We checked and this error exists in sdsc portal. We will report as
>> soon as
>> > > the bug is fixed.
>> > >
>> > >
>> > > On Thu, Apr 16, 2015 at 3:33 PM, K Yoshimoto <ke...@sdsc.edu>
>> wrote:
>> > >
>> > >>
>> > >> My Experiment Summary does not have STDOUT and STDERR links,
>> > >> rather it just has this text:
>> > >>
>> > >> Outputs Experiment hasn't completed. Experiment Status is :
>> > >> COMPLETED
>> > >>
>> > >> Is there someone who can investigate this experiment?
>> > >>
>> > >>
>> http://dev.test-drive.airavata.org/portal/sdsc/public/experiment/summary?expId=shelltest_4f04d8a7-85a8-4ae4-aa07-f9e6dce7c016
>> > >>
>> > >>
>> > >> On Thu, Apr 16, 2015 at 03:27:27PM -0400, Eroma Abeysinghe wrote:
>> > >> > Hi Kenneth,
>> > >> >
>> > >> > If the experiment is completed successfully; should be able to
>> click on
>> > >> the
>> > >> > STDOUT link and view the output.
>> > >> > Please see the attached image
>> > >> >
>> > >> > Hope this helps
>> > >> >
>> > >> > Thanks,
>> > >> > Eroma
>> > >> >
>> > >> > On Thu, Apr 16, 2015 at 3:13 PM, K Yoshimoto <ke...@sdsc.edu>
>> wrote:
>> > >> >
>> > >> > >
>> > >> > > Thanks, Eroma.
>> > >> > >
>> > >> > > I see the Experiment Summary for this experiment. There is
>> > >> > > no STDOUT field. This is for the echo experiment. There is
>> > >> > > an Outputs field:
>> > >> > >
>> > >> > > Outputs Experiment hasn't completed. Experiment Status
>> is :
>> > >> > > COMPLETED
>> > >> > >
>> > >> > > Kenneth
>> > >> > >
>> > >> > > On Thu, Apr 16, 2015 at 03:08:50PM -0400, Eroma Abeysinghe wrote:
>> > >> > > > Hi Kenneth,
>> > >> > > >
>> > >> > > > If you are using the portal (
>> > >> http://dev.test-drive.airavata.org/portal)
>> > >> > > > you can view the output in STDOUT
>> > >> > > >
>> > >> > > > For this search for the experiment (Main Menu --> Experiment
>> -->
>> > >> Search
>> > >> > > > Page) and STDOUT is in the Experiment Summary Page
>> > >> > > >
>> > >> > > > Hope this helps
>> > >> > > >
>> > >> > > > Thanks,
>> > >> > > > Eroma
>> > >> > > >
>> > >> > > > On Thu, Apr 16, 2015 at 2:33 PM, K Yoshimoto <kenneth@sdsc.edu
>> >
>> > >> wrote:
>> > >> > > >
>> > >> > > > >
>> > >> > > > > I am able to run the echo application in an experiment on
>> > >> > > > > the test-drive portal. How do I get the output from the
>> > >> > > > > experiment?
>> > >> > > > >
>> > >> > > > > Kenneth
>> > >> > > > >
>> > >> > > > >
>> > >> > > >
>> > >> > > >
>> > >> > > > --
>> > >> > > > Thank You,
>> > >> > > > Best Regards,
>> > >> > > > Eroma
>> > >> > >
>> > >> >
>> > >> >
>> > >> >
>> > >> > --
>> > >> > Thank You,
>> > >> > Best Regards,
>> > >> > Eroma
>> > >>
>> > >>
>> > >>
>> > >
>> > >
>> > > --
>> > > -Sincerely,
>> > > Nipurn Doshi
>> > >
>> >
>> >
>> >
>> > --
>> > -Sincerely,
>> > Nipurn Doshi
>>
>
>
--
-Sincerely,
Nipurn Doshi
Re: How to get experiment output?
Posted by Chathuri Wimalasena <ka...@gmail.com>.
Dev PGA should be working now Kenneth.
On Thu, Apr 16, 2015 at 5:46 PM, K Yoshimoto <ke...@sdsc.edu> wrote:
>
> Nipurn,
>
> Thanks for looking into this. Please send an email update
> to the list when it's good to try again.
>
> Kenneth
>
> On Thu, Apr 16, 2015 at 05:42:01PM -0400, Nipurn Doshi wrote:
> > Hi Kenneth,
> >
> > We figured out the errors and found out that some of the old PGA code
> > hadn't made their way to the commits.
> > Although, we fixed them, right now we are facing the issue of Experiments
> > not launching on SDSC Dev Portal. The problem looks trivial and we hope
> to
> > fix it by either today evening or max tomorrow morning.
> >
> >
> >
> > On Thu, Apr 16, 2015 at 4:03 PM, Nipurn Doshi <ni...@umail.iu.edu>
> wrote:
> >
> > > We checked and this error exists in sdsc portal. We will report as
> soon as
> > > the bug is fixed.
> > >
> > >
> > > On Thu, Apr 16, 2015 at 3:33 PM, K Yoshimoto <ke...@sdsc.edu> wrote:
> > >
> > >>
> > >> My Experiment Summary does not have STDOUT and STDERR links,
> > >> rather it just has this text:
> > >>
> > >> Outputs Experiment hasn't completed. Experiment Status is :
> > >> COMPLETED
> > >>
> > >> Is there someone who can investigate this experiment?
> > >>
> > >>
> http://dev.test-drive.airavata.org/portal/sdsc/public/experiment/summary?expId=shelltest_4f04d8a7-85a8-4ae4-aa07-f9e6dce7c016
> > >>
> > >>
> > >> On Thu, Apr 16, 2015 at 03:27:27PM -0400, Eroma Abeysinghe wrote:
> > >> > Hi Kenneth,
> > >> >
> > >> > If the experiment is completed successfully; should be able to
> click on
> > >> the
> > >> > STDOUT link and view the output.
> > >> > Please see the attached image
> > >> >
> > >> > Hope this helps
> > >> >
> > >> > Thanks,
> > >> > Eroma
> > >> >
> > >> > On Thu, Apr 16, 2015 at 3:13 PM, K Yoshimoto <ke...@sdsc.edu>
> wrote:
> > >> >
> > >> > >
> > >> > > Thanks, Eroma.
> > >> > >
> > >> > > I see the Experiment Summary for this experiment. There is
> > >> > > no STDOUT field. This is for the echo experiment. There is
> > >> > > an Outputs field:
> > >> > >
> > >> > > Outputs Experiment hasn't completed. Experiment Status is
> :
> > >> > > COMPLETED
> > >> > >
> > >> > > Kenneth
> > >> > >
> > >> > > On Thu, Apr 16, 2015 at 03:08:50PM -0400, Eroma Abeysinghe wrote:
> > >> > > > Hi Kenneth,
> > >> > > >
> > >> > > > If you are using the portal (
> > >> http://dev.test-drive.airavata.org/portal)
> > >> > > > you can view the output in STDOUT
> > >> > > >
> > >> > > > For this search for the experiment (Main Menu --> Experiment -->
> > >> Search
> > >> > > > Page) and STDOUT is in the Experiment Summary Page
> > >> > > >
> > >> > > > Hope this helps
> > >> > > >
> > >> > > > Thanks,
> > >> > > > Eroma
> > >> > > >
> > >> > > > On Thu, Apr 16, 2015 at 2:33 PM, K Yoshimoto <ke...@sdsc.edu>
> > >> wrote:
> > >> > > >
> > >> > > > >
> > >> > > > > I am able to run the echo application in an experiment on
> > >> > > > > the test-drive portal. How do I get the output from the
> > >> > > > > experiment?
> > >> > > > >
> > >> > > > > Kenneth
> > >> > > > >
> > >> > > > >
> > >> > > >
> > >> > > >
> > >> > > > --
> > >> > > > Thank You,
> > >> > > > Best Regards,
> > >> > > > Eroma
> > >> > >
> > >> >
> > >> >
> > >> >
> > >> > --
> > >> > Thank You,
> > >> > Best Regards,
> > >> > Eroma
> > >>
> > >>
> > >>
> > >
> > >
> > > --
> > > -Sincerely,
> > > Nipurn Doshi
> > >
> >
> >
> >
> > --
> > -Sincerely,
> > Nipurn Doshi
>
Re: How to get experiment output?
Posted by K Yoshimoto <ke...@sdsc.edu>.
Nipurn,
Thanks for looking into this. Please send an email update
to the list when it's good to try again.
Kenneth
On Thu, Apr 16, 2015 at 05:42:01PM -0400, Nipurn Doshi wrote:
> Hi Kenneth,
>
> We figured out the errors and found out that some of the old PGA code
> hadn't made their way to the commits.
> Although, we fixed them, right now we are facing the issue of Experiments
> not launching on SDSC Dev Portal. The problem looks trivial and we hope to
> fix it by either today evening or max tomorrow morning.
>
>
>
> On Thu, Apr 16, 2015 at 4:03 PM, Nipurn Doshi <ni...@umail.iu.edu> wrote:
>
> > We checked and this error exists in sdsc portal. We will report as soon as
> > the bug is fixed.
> >
> >
> > On Thu, Apr 16, 2015 at 3:33 PM, K Yoshimoto <ke...@sdsc.edu> wrote:
> >
> >>
> >> My Experiment Summary does not have STDOUT and STDERR links,
> >> rather it just has this text:
> >>
> >> Outputs Experiment hasn't completed. Experiment Status is :
> >> COMPLETED
> >>
> >> Is there someone who can investigate this experiment?
> >>
> >> http://dev.test-drive.airavata.org/portal/sdsc/public/experiment/summary?expId=shelltest_4f04d8a7-85a8-4ae4-aa07-f9e6dce7c016
> >>
> >>
> >> On Thu, Apr 16, 2015 at 03:27:27PM -0400, Eroma Abeysinghe wrote:
> >> > Hi Kenneth,
> >> >
> >> > If the experiment is completed successfully; should be able to click on
> >> the
> >> > STDOUT link and view the output.
> >> > Please see the attached image
> >> >
> >> > Hope this helps
> >> >
> >> > Thanks,
> >> > Eroma
> >> >
> >> > On Thu, Apr 16, 2015 at 3:13 PM, K Yoshimoto <ke...@sdsc.edu> wrote:
> >> >
> >> > >
> >> > > Thanks, Eroma.
> >> > >
> >> > > I see the Experiment Summary for this experiment. There is
> >> > > no STDOUT field. This is for the echo experiment. There is
> >> > > an Outputs field:
> >> > >
> >> > > Outputs Experiment hasn't completed. Experiment Status is :
> >> > > COMPLETED
> >> > >
> >> > > Kenneth
> >> > >
> >> > > On Thu, Apr 16, 2015 at 03:08:50PM -0400, Eroma Abeysinghe wrote:
> >> > > > Hi Kenneth,
> >> > > >
> >> > > > If you are using the portal (
> >> http://dev.test-drive.airavata.org/portal)
> >> > > > you can view the output in STDOUT
> >> > > >
> >> > > > For this search for the experiment (Main Menu --> Experiment -->
> >> Search
> >> > > > Page) and STDOUT is in the Experiment Summary Page
> >> > > >
> >> > > > Hope this helps
> >> > > >
> >> > > > Thanks,
> >> > > > Eroma
> >> > > >
> >> > > > On Thu, Apr 16, 2015 at 2:33 PM, K Yoshimoto <ke...@sdsc.edu>
> >> wrote:
> >> > > >
> >> > > > >
> >> > > > > I am able to run the echo application in an experiment on
> >> > > > > the test-drive portal. How do I get the output from the
> >> > > > > experiment?
> >> > > > >
> >> > > > > Kenneth
> >> > > > >
> >> > > > >
> >> > > >
> >> > > >
> >> > > > --
> >> > > > Thank You,
> >> > > > Best Regards,
> >> > > > Eroma
> >> > >
> >> >
> >> >
> >> >
> >> > --
> >> > Thank You,
> >> > Best Regards,
> >> > Eroma
> >>
> >>
> >>
> >
> >
> > --
> > -Sincerely,
> > Nipurn Doshi
> >
>
>
>
> --
> -Sincerely,
> Nipurn Doshi
Re: How to get experiment output?
Posted by Nipurn Doshi <ni...@umail.iu.edu>.
Hi Kenneth,
We figured out the errors and found out that some of the old PGA code
hadn't made their way to the commits.
Although, we fixed them, right now we are facing the issue of Experiments
not launching on SDSC Dev Portal. The problem looks trivial and we hope to
fix it by either today evening or max tomorrow morning.
On Thu, Apr 16, 2015 at 4:03 PM, Nipurn Doshi <ni...@umail.iu.edu> wrote:
> We checked and this error exists in sdsc portal. We will report as soon as
> the bug is fixed.
>
>
> On Thu, Apr 16, 2015 at 3:33 PM, K Yoshimoto <ke...@sdsc.edu> wrote:
>
>>
>> My Experiment Summary does not have STDOUT and STDERR links,
>> rather it just has this text:
>>
>> Outputs Experiment hasn't completed. Experiment Status is :
>> COMPLETED
>>
>> Is there someone who can investigate this experiment?
>>
>> http://dev.test-drive.airavata.org/portal/sdsc/public/experiment/summary?expId=shelltest_4f04d8a7-85a8-4ae4-aa07-f9e6dce7c016
>>
>>
>> On Thu, Apr 16, 2015 at 03:27:27PM -0400, Eroma Abeysinghe wrote:
>> > Hi Kenneth,
>> >
>> > If the experiment is completed successfully; should be able to click on
>> the
>> > STDOUT link and view the output.
>> > Please see the attached image
>> >
>> > Hope this helps
>> >
>> > Thanks,
>> > Eroma
>> >
>> > On Thu, Apr 16, 2015 at 3:13 PM, K Yoshimoto <ke...@sdsc.edu> wrote:
>> >
>> > >
>> > > Thanks, Eroma.
>> > >
>> > > I see the Experiment Summary for this experiment. There is
>> > > no STDOUT field. This is for the echo experiment. There is
>> > > an Outputs field:
>> > >
>> > > Outputs Experiment hasn't completed. Experiment Status is :
>> > > COMPLETED
>> > >
>> > > Kenneth
>> > >
>> > > On Thu, Apr 16, 2015 at 03:08:50PM -0400, Eroma Abeysinghe wrote:
>> > > > Hi Kenneth,
>> > > >
>> > > > If you are using the portal (
>> http://dev.test-drive.airavata.org/portal)
>> > > > you can view the output in STDOUT
>> > > >
>> > > > For this search for the experiment (Main Menu --> Experiment -->
>> Search
>> > > > Page) and STDOUT is in the Experiment Summary Page
>> > > >
>> > > > Hope this helps
>> > > >
>> > > > Thanks,
>> > > > Eroma
>> > > >
>> > > > On Thu, Apr 16, 2015 at 2:33 PM, K Yoshimoto <ke...@sdsc.edu>
>> wrote:
>> > > >
>> > > > >
>> > > > > I am able to run the echo application in an experiment on
>> > > > > the test-drive portal. How do I get the output from the
>> > > > > experiment?
>> > > > >
>> > > > > Kenneth
>> > > > >
>> > > > >
>> > > >
>> > > >
>> > > > --
>> > > > Thank You,
>> > > > Best Regards,
>> > > > Eroma
>> > >
>> >
>> >
>> >
>> > --
>> > Thank You,
>> > Best Regards,
>> > Eroma
>>
>>
>>
>
>
> --
> -Sincerely,
> Nipurn Doshi
>
--
-Sincerely,
Nipurn Doshi
Re: How to get experiment output?
Posted by Nipurn Doshi <ni...@umail.iu.edu>.
We checked and this error exists in sdsc portal. We will report as soon as
the bug is fixed.
On Thu, Apr 16, 2015 at 3:33 PM, K Yoshimoto <ke...@sdsc.edu> wrote:
>
> My Experiment Summary does not have STDOUT and STDERR links,
> rather it just has this text:
>
> Outputs Experiment hasn't completed. Experiment Status is :
> COMPLETED
>
> Is there someone who can investigate this experiment?
>
> http://dev.test-drive.airavata.org/portal/sdsc/public/experiment/summary?expId=shelltest_4f04d8a7-85a8-4ae4-aa07-f9e6dce7c016
>
>
> On Thu, Apr 16, 2015 at 03:27:27PM -0400, Eroma Abeysinghe wrote:
> > Hi Kenneth,
> >
> > If the experiment is completed successfully; should be able to click on
> the
> > STDOUT link and view the output.
> > Please see the attached image
> >
> > Hope this helps
> >
> > Thanks,
> > Eroma
> >
> > On Thu, Apr 16, 2015 at 3:13 PM, K Yoshimoto <ke...@sdsc.edu> wrote:
> >
> > >
> > > Thanks, Eroma.
> > >
> > > I see the Experiment Summary for this experiment. There is
> > > no STDOUT field. This is for the echo experiment. There is
> > > an Outputs field:
> > >
> > > Outputs Experiment hasn't completed. Experiment Status is :
> > > COMPLETED
> > >
> > > Kenneth
> > >
> > > On Thu, Apr 16, 2015 at 03:08:50PM -0400, Eroma Abeysinghe wrote:
> > > > Hi Kenneth,
> > > >
> > > > If you are using the portal (
> http://dev.test-drive.airavata.org/portal)
> > > > you can view the output in STDOUT
> > > >
> > > > For this search for the experiment (Main Menu --> Experiment -->
> Search
> > > > Page) and STDOUT is in the Experiment Summary Page
> > > >
> > > > Hope this helps
> > > >
> > > > Thanks,
> > > > Eroma
> > > >
> > > > On Thu, Apr 16, 2015 at 2:33 PM, K Yoshimoto <ke...@sdsc.edu>
> wrote:
> > > >
> > > > >
> > > > > I am able to run the echo application in an experiment on
> > > > > the test-drive portal. How do I get the output from the
> > > > > experiment?
> > > > >
> > > > > Kenneth
> > > > >
> > > > >
> > > >
> > > >
> > > > --
> > > > Thank You,
> > > > Best Regards,
> > > > Eroma
> > >
> >
> >
> >
> > --
> > Thank You,
> > Best Regards,
> > Eroma
>
>
>
--
-Sincerely,
Nipurn Doshi
Re: How to get experiment output?
Posted by K Yoshimoto <ke...@sdsc.edu>.
My Experiment Summary does not have STDOUT and STDERR links,
rather it just has this text:
Outputs Experiment hasn't completed. Experiment Status is : COMPLETED
Is there someone who can investigate this experiment?
http://dev.test-drive.airavata.org/portal/sdsc/public/experiment/summary?expId=shelltest_4f04d8a7-85a8-4ae4-aa07-f9e6dce7c016
On Thu, Apr 16, 2015 at 03:27:27PM -0400, Eroma Abeysinghe wrote:
> Hi Kenneth,
>
> If the experiment is completed successfully; should be able to click on the
> STDOUT link and view the output.
> Please see the attached image
>
> Hope this helps
>
> Thanks,
> Eroma
>
> On Thu, Apr 16, 2015 at 3:13 PM, K Yoshimoto <ke...@sdsc.edu> wrote:
>
> >
> > Thanks, Eroma.
> >
> > I see the Experiment Summary for this experiment. There is
> > no STDOUT field. This is for the echo experiment. There is
> > an Outputs field:
> >
> > Outputs Experiment hasn't completed. Experiment Status is :
> > COMPLETED
> >
> > Kenneth
> >
> > On Thu, Apr 16, 2015 at 03:08:50PM -0400, Eroma Abeysinghe wrote:
> > > Hi Kenneth,
> > >
> > > If you are using the portal (http://dev.test-drive.airavata.org/portal)
> > > you can view the output in STDOUT
> > >
> > > For this search for the experiment (Main Menu --> Experiment --> Search
> > > Page) and STDOUT is in the Experiment Summary Page
> > >
> > > Hope this helps
> > >
> > > Thanks,
> > > Eroma
> > >
> > > On Thu, Apr 16, 2015 at 2:33 PM, K Yoshimoto <ke...@sdsc.edu> wrote:
> > >
> > > >
> > > > I am able to run the echo application in an experiment on
> > > > the test-drive portal. How do I get the output from the
> > > > experiment?
> > > >
> > > > Kenneth
> > > >
> > > >
> > >
> > >
> > > --
> > > Thank You,
> > > Best Regards,
> > > Eroma
> >
>
>
>
> --
> Thank You,
> Best Regards,
> Eroma
Re: How to get experiment output?
Posted by Eroma Abeysinghe <er...@gmail.com>.
Hi Kenneth,
If the experiment is completed successfully; should be able to click on the
STDOUT link and view the output.
Please see the attached image
Hope this helps
Thanks,
Eroma
On Thu, Apr 16, 2015 at 3:13 PM, K Yoshimoto <ke...@sdsc.edu> wrote:
>
> Thanks, Eroma.
>
> I see the Experiment Summary for this experiment. There is
> no STDOUT field. This is for the echo experiment. There is
> an Outputs field:
>
> Outputs Experiment hasn't completed. Experiment Status is :
> COMPLETED
>
> Kenneth
>
> On Thu, Apr 16, 2015 at 03:08:50PM -0400, Eroma Abeysinghe wrote:
> > Hi Kenneth,
> >
> > If you are using the portal (http://dev.test-drive.airavata.org/portal)
> > you can view the output in STDOUT
> >
> > For this search for the experiment (Main Menu --> Experiment --> Search
> > Page) and STDOUT is in the Experiment Summary Page
> >
> > Hope this helps
> >
> > Thanks,
> > Eroma
> >
> > On Thu, Apr 16, 2015 at 2:33 PM, K Yoshimoto <ke...@sdsc.edu> wrote:
> >
> > >
> > > I am able to run the echo application in an experiment on
> > > the test-drive portal. How do I get the output from the
> > > experiment?
> > >
> > > Kenneth
> > >
> > >
> >
> >
> > --
> > Thank You,
> > Best Regards,
> > Eroma
>
--
Thank You,
Best Regards,
Eroma
Re: How to get experiment output?
Posted by K Yoshimoto <ke...@sdsc.edu>.
Thanks, Eroma.
I see the Experiment Summary for this experiment. There is
no STDOUT field. This is for the echo experiment. There is
an Outputs field:
Outputs Experiment hasn't completed. Experiment Status is : COMPLETED
Kenneth
On Thu, Apr 16, 2015 at 03:08:50PM -0400, Eroma Abeysinghe wrote:
> Hi Kenneth,
>
> If you are using the portal (http://dev.test-drive.airavata.org/portal)
> you can view the output in STDOUT
>
> For this search for the experiment (Main Menu --> Experiment --> Search
> Page) and STDOUT is in the Experiment Summary Page
>
> Hope this helps
>
> Thanks,
> Eroma
>
> On Thu, Apr 16, 2015 at 2:33 PM, K Yoshimoto <ke...@sdsc.edu> wrote:
>
> >
> > I am able to run the echo application in an experiment on
> > the test-drive portal. How do I get the output from the
> > experiment?
> >
> > Kenneth
> >
> >
>
>
> --
> Thank You,
> Best Regards,
> Eroma
Re: How to get experiment output?
Posted by Eroma Abeysinghe <er...@gmail.com>.
Hi Kenneth,
If you are using the portal (http://dev.test-drive.airavata.org/portal)
you can view the output in STDOUT
For this search for the experiment (Main Menu --> Experiment --> Search
Page) and STDOUT is in the Experiment Summary Page
Hope this helps
Thanks,
Eroma
On Thu, Apr 16, 2015 at 2:33 PM, K Yoshimoto <ke...@sdsc.edu> wrote:
>
> I am able to run the echo application in an experiment on
> the test-drive portal. How do I get the output from the
> experiment?
>
> Kenneth
>
>
--
Thank You,
Best Regards,
Eroma
How to get experiment output?
Posted by K Yoshimoto <ke...@sdsc.edu>.
I am able to run the echo application in an experiment on
the test-drive portal. How do I get the output from the
experiment?
Kenneth