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Posted to commits@taverna.apache.org by st...@apache.org on 2015/02/17 12:47:09 UTC
[42/50] [abbrv] incubator-taverna-plugin-bioinformatics git commit:
Merge https://github.com/taverna/taverna-biomart-martservice master
Merge https://github.com/taverna/taverna-biomart-martservice master
Project: http://git-wip-us.apache.org/repos/asf/incubator-taverna-plugin-bioinformatics/repo
Commit: http://git-wip-us.apache.org/repos/asf/incubator-taverna-plugin-bioinformatics/commit/f6fa5ca8
Tree: http://git-wip-us.apache.org/repos/asf/incubator-taverna-plugin-bioinformatics/tree/f6fa5ca8
Diff: http://git-wip-us.apache.org/repos/asf/incubator-taverna-plugin-bioinformatics/diff/f6fa5ca8
Branch: refs/heads/master
Commit: f6fa5ca8ce7d5b1361d8283e15217d9cac89fdcd
Parents: 89e1f54 9e08cac
Author: Stian Soiland-Reyes <st...@apache.org>
Authored: Mon Feb 2 09:57:58 2015 +0000
Committer: Stian Soiland-Reyes <st...@apache.org>
Committed: Mon Feb 2 09:57:58 2015 +0000
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taverna-biomart-martservice/pom.xml | 105 +
.../org/biomart/martservice/DatasetLink.java | 220 ++
.../org/biomart/martservice/MartDataset.java | 342 ++
.../java/org/biomart/martservice/MartQuery.java | 436 +++
.../org/biomart/martservice/MartRegistry.java | 96 +
.../org/biomart/martservice/MartService.java | 709 ++++
.../martservice/MartServiceException.java | 86 +
.../biomart/martservice/MartServiceUtils.java | 725 ++++
.../martservice/MartServiceXMLHandler.java | 390 ++
.../biomart/martservice/MartURLLocation.java | 422 +++
.../org/biomart/martservice/ResultReceiver.java | 61 +
.../martservice/ResultReceiverException.java | 85 +
.../config/QueryConfigController.java | 388 ++
.../martservice/config/QueryConfigUtils.java | 598 +++
.../config/event/QueryComponentAdapter.java | 109 +
.../config/event/QueryComponentEvent.java | 120 +
.../config/event/QueryComponentListener.java | 104 +
.../config/ui/ConfigDisplayObject.java | 125 +
.../martservice/config/ui/ExpandableBox.java | 204 +
.../martservice/config/ui/MartServiceIcons.java | 104 +
.../ui/MartServiceQueryConfigUIFactory.java | 3543 ++++++++++++++++++
.../martservice/config/ui/MinimalLayout.java | 158 +
.../martservice/config/ui/QueryComponent.java | 342 ++
.../config/ui/QueryConfigUIFactory.java | 345 ++
.../biomart/martservice/query/Attribute.java | 198 +
.../org/biomart/martservice/query/Dataset.java | 309 ++
.../org/biomart/martservice/query/Filter.java | 243 ++
.../org/biomart/martservice/query/Link.java | 181 +
.../org/biomart/martservice/query/Query.java | 555 +++
.../martservice/query/QueryListener.java | 108 +
.../martservice/query/QueryXMLHandler.java | 332 ++
.../biomart/martservice/config/ui/contract.gif | Bin 0 -> 90 bytes
.../biomart/martservice/config/ui/expand.gif | Bin 0 -> 93 bytes
.../martservice/config/ui/gene_schematic.gif | Bin 0 -> 734 bytes
.../config/ui/gene_schematic_3utr.gif | Bin 0 -> 717 bytes
.../config/ui/gene_schematic_5utr.gif | Bin 0 -> 722 bytes
.../config/ui/gene_schematic_cdna.gif | Bin 0 -> 743 bytes
.../config/ui/gene_schematic_coding.gif | Bin 0 -> 760 bytes
.../ui/gene_schematic_coding_gene_flank.gif | Bin 0 -> 715 bytes
.../gene_schematic_coding_transcript_flank.gif | Bin 0 -> 765 bytes
.../config/ui/gene_schematic_gene_exon.gif | Bin 0 -> 504 bytes
.../ui/gene_schematic_gene_exon_intron.gif | Bin 0 -> 710 bytes
.../config/ui/gene_schematic_gene_flank.gif | Bin 0 -> 710 bytes
.../config/ui/gene_schematic_peptide.gif | Bin 0 -> 760 bytes
.../ui/gene_schematic_transcript_exon.gif | Bin 0 -> 920 bytes
.../gene_schematic_transcript_exon_intron.gif | Bin 0 -> 716 bytes
.../ui/gene_schematic_transcript_flank.gif | Bin 0 -> 751 bytes
.../biomart/martservice/MartDatasetTest.java | 335 ++
.../biomart/martservice/MartRegistryTest.java | 113 +
.../martservice/MartServiceUtilsTest.java | 65 +
.../martservice/MartServiceXMLHandlerTest.java | 218 ++
.../martservice/MartURLLocationTest.java | 255 ++
.../config/event/QueryComponentEventTest.java | 131 +
.../config/ui/MartServiceIconsTest.java | 77 +
.../martservice/query/AttributeTest.java | 164 +
.../biomart/martservice/query/DatasetTest.java | 308 ++
.../biomart/martservice/query/FilterTest.java | 242 ++
.../biomart/martservice/query/QueryTest.java | 303 ++
58 files changed, 13954 insertions(+)
----------------------------------------------------------------------