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Posted to issues@flink.apache.org by "LiJun (JIRA)" <ji...@apache.org> on 2019/08/09 07:37:00 UTC
[jira] [Commented] (FLINK-13655) Caused by: java.io.IOException:
Thread 'SortMerger spilling thread' terminated due to an exception
[ https://issues.apache.org/jira/browse/FLINK-13655?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=16903660#comment-16903660 ]
LiJun commented on FLINK-13655:
-------------------------------
I verified this issue in Flink 1.8.1 version. The problem can not be reproduced. so I think it is fixed in latest version.
> Caused by: java.io.IOException: Thread 'SortMerger spilling thread' terminated due to an exception
> --------------------------------------------------------------------------------------------------
>
> Key: FLINK-13655
> URL: https://issues.apache.org/jira/browse/FLINK-13655
> Project: Flink
> Issue Type: Bug
> Components: API / Type Serialization System
> Affects Versions: 1.6.3
> Environment: {color:#e8bf6a}<properties>
> {color}{color:#e8bf6a} <project.build.sourceEncoding>{color}UTF-8{color:#e8bf6a}</project.build.sourceEncoding>
> {color}{color:#e8bf6a} <flink.version>{color}1.5.6{color:#e8bf6a}</flink.version>
> {color}{color:#e8bf6a} <slf4j.version>{color}1.7.7{color:#e8bf6a}</slf4j.version>
> {color}{color:#e8bf6a} <log4j.version>{color}1.2.17{color:#e8bf6a}</log4j.version>
> {color}{color:#e8bf6a} <scala.binary.version>{color}2.11{color:#e8bf6a}</scala.binary.version>
> {color}{color:#e8bf6a} <scala.version>{color}2.11.12{color:#e8bf6a}</scala.version>
> {color}{color:#e8bf6a}</properties>{color}
> {color:#e8bf6a}_parameters.setBoolean("recursive.file_{color:#333333}.enumeration",true){color}{color}
> Reporter: LiJun
> Priority: Minor
> Labels: KryoSerializer
>
> Symptom:
> flink program can sucessfully read and process single ORC file from HDFS,whatever given reading path is file's parent folder or specific file path. However,I put them together in the same folder and program reads that folder, the following error always occurs.
> {color:#cc7832}val {color}configHadoop = {color:#cc7832}new {color}org.apache.hadoop.conf.Configuration()
> configHadoop.set({color:#6a8759}"HADOOP_USER_NAME"{color}{color:#cc7832}, {color}{color:#6a8759}"user"{color})
> configHadoop.set({color:#6a8759}"fs.defaultFS"{color}{color:#cc7832}, {color}{color:#6a8759}"xx.xxx.xx.xx"{color})
> {color:#cc7832}val {color}env = ExecutionEnvironment.getExecutionEnvironment
> {color:#cc7832}val {color}bTableEnv = TableEnvironment.getTableEnvironment(env)
> {color:#cc7832}val {color}orcTableSource = OrcTableSource.builder()
> {color:#808080}// path to ORC file(s). NOTE: By default, directories are recursively scanned.{color} .path(inPath)
> {color:#808080}// schema of ORC files{color} .forOrcSchema({color:#6a8759}"struct<storage_time:String,storage_source_msg:String,rev_name:String,where2:String,rev_phone:String,bind_email:String,ord_pin:String,ord_tm:String>"{color})
> {color:#808080}// Hadoop configuration{color} .withConfiguration(configHadoop)
> {color:#808080}// build OrcTableSource{color} .build()
>
> ------------The following is stack info --------------------
> Root exception
> Timestamp: 2019-08-08, 20:15:05
> java.lang.Exception: The data preparation for task 'CHAIN GroupReduce (GroupReduce at com.jd.risk.flink.analysis.framework.core.EventOfflineServiceFrameWork.startService(EventOfflineServiceFrameWork.scala:41)) -> Map (Key Extractor)' , caused an error: Error obtaining the sorted input: Thread 'SortMerger spilling thread' terminated due to an exception: Index: 97, Size: 17
> at org.apache.flink.runtime.operators.BatchTask.run(BatchTask.java:479)
> at org.apache.flink.runtime.operators.BatchTask.invoke(BatchTask.java:368)
> at org.apache.flink.runtime.taskmanager.Task.run(Task.java:712)
> at java.lang.Thread.run(Thread.java:748)
> Caused by: java.lang.RuntimeException: Error obtaining the sorted input: Thread 'SortMerger spilling thread' terminated due to an exception: Index: 97, Size: 17
> at org.apache.flink.runtime.operators.sort.UnilateralSortMerger.getIterator(UnilateralSortMerger.java:650)
> at org.apache.flink.runtime.operators.BatchTask.getInput(BatchTask.java:1108)
> at org.apache.flink.runtime.operators.GroupReduceDriver.prepare(GroupReduceDriver.java:99)
> at org.apache.flink.runtime.operators.BatchTask.run(BatchTask.java:473)
> ... 3 more
> Caused by: java.io.IOException: Thread 'SortMerger spilling thread' terminated due to an exception: Index: 97, Size: 17
> at org.apache.flink.runtime.operators.sort.UnilateralSortMerger$ThreadBase.run(UnilateralSortMerger.java:831)
> Caused by: java.lang.IndexOutOfBoundsException: Index: 97, Size: 17
> at java.util.ArrayList.rangeCheck(ArrayList.java:653)
> at java.util.ArrayList.get(ArrayList.java:429)
> at com.esotericsoftware.kryo.util.MapReferenceResolver.getReadObject(MapReferenceResolver.java:42)
> at com.esotericsoftware.kryo.Kryo.readReferenceOrNull(Kryo.java:805)
> at com.esotericsoftware.kryo.Kryo.readClassAndObject(Kryo.java:759)
> at org.apache.flink.api.java.typeutils.runtime.kryo.KryoSerializer.deserialize(KryoSerializer.java:315)
> at org.apache.flink.api.java.typeutils.runtime.kryo.KryoSerializer.deserialize(KryoSerializer.java:335)
> at org.apache.flink.api.java.typeutils.runtime.kryo.KryoSerializer.copy(KryoSerializer.java:350)
> at org.apache.flink.api.java.typeutils.runtime.TupleSerializerBase.copy(TupleSerializerBase.java:99)
> at org.apache.flink.api.scala.typeutils.TraversableSerializer.copy(TraversableSerializer.scala:84)
> at org.apache.flink.api.java.typeutils.runtime.TupleSerializerBase.copy(TupleSerializerBase.java:99)
> at org.apache.flink.api.java.typeutils.runtime.TupleSerializerBase.copy(TupleSerializerBase.java:99)
> at org.apache.flink.runtime.operators.sort.NormalizedKeySorter.writeToOutput(NormalizedKeySorter.java:519)
> at org.apache.flink.runtime.operators.sort.UnilateralSortMerger$SpillingThread.go(UnilateralSortMerger.java:1375)
> at org.apache.flink.runtime.operators.sort.UnilateralSortMerger$ThreadBase.run(UnilateralSortMerger.java:827)
> CHAIN GroupReduce (GroupReduce at com.jd.risk.flink.analysis.framework.core.EventOfflineServiceFrameWork.startService(EventOfflineServiceFrameWork.scala:41)) -> Map (Key Extractor) (305/480)
> Timestamp: 2019-08-08, 20:15:05 Location: LF-BCC-POD0-172-21-60-234.hadoop.jd.local:15837
> java.lang.Exception: The data preparation for task 'CHAIN GroupReduce (GroupReduce at com.jd.risk.flink.analysis.framework.core.EventOfflineServiceFrameWork.startService(EventOfflineServiceFrameWork.scala:41)) -> Map (Key Extractor)' , caused an error: Error obtaining the sorted input: Thread 'SortMerger spilling thread' terminated due to an exception: Index: 97, Size: 17
> at org.apache.flink.runtime.operators.BatchTask.run(BatchTask.java:479)
> at org.apache.flink.runtime.operators.BatchTask.invoke(BatchTask.java:368)
> at org.apache.flink.runtime.taskmanager.Task.run(Task.java:712)
> at java.lang.Thread.run(Thread.java:748)
> Caused by: java.lang.RuntimeException: Error obtaining the sorted input: Thread 'SortMerger spilling thread' terminated due to an exception: Index: 97, Size: 17
> at org.apache.flink.runtime.operators.sort.UnilateralSortMerger.getIterator(UnilateralSortMerger.java:650)
> at org.apache.flink.runtime.operators.BatchTask.getInput(BatchTask.java:1108)
> at org.apache.flink.runtime.operators.GroupReduceDriver.prepare(GroupReduceDriver.java:99)
> at org.apache.flink.runtime.operators.BatchTask.run(BatchTask.java:473)
> ... 3 more
> Caused by: java.io.IOException: Thread 'SortMerger spilling thread' terminated due to an exception: Index: 97, Size: 17
> at org.apache.flink.runtime.operators.sort.UnilateralSortMerger$ThreadBase.run(UnilateralSortMerger.java:831)
> Caused by: java.lang.IndexOutOfBoundsException: Index: 97, Size: 17
> at java.util.ArrayList.rangeCheck(ArrayList.java:653)
> at java.util.ArrayList.get(ArrayList.java:429)
> at com.esotericsoftware.kryo.util.MapReferenceResolver.getReadObject(MapReferenceResolver.java:42)
> at com.esotericsoftware.kryo.Kryo.readReferenceOrNull(Kryo.java:805)
> at com.esotericsoftware.kryo.Kryo.readClassAndObject(Kryo.java:759)
> at org.apache.flink.api.java.typeutils.runtime.kryo.KryoSerializer.deserialize(KryoSerializer.java:315)
> at org.apache.flink.api.java.typeutils.runtime.kryo.KryoSerializer.deserialize(KryoSerializer.java:335)
> at org.apache.flink.api.java.typeutils.runtime.kryo.KryoSerializer.copy(KryoSerializer.java:350)
> at org.apache.flink.api.java.typeutils.runtime.TupleSerializerBase.copy(TupleSerializerBase.java:99)
> at org.apache.flink.api.scala.typeutils.TraversableSerializer.copy(TraversableSerializer.scala:84)
> at org.apache.flink.api.java.typeutils.runtime.TupleSerializerBase.copy(TupleSerializerBase.java:99)
> at org.apache.flink.api.java.typeutils.runtime.TupleSerializerBase.copy(TupleSerializerBase.java:99)
> at org.apache.flink.runtime.operators.sort.NormalizedKeySorter.writeToOutput(NormalizedKeySorter.java:519)
> at org.apache.flink.runtime.operators.sort.UnilateralSortMerger$SpillingThread.go(UnilateralSortMerger.java:1375)
> at org.apache.flink.runtime.operators.sort.UnilateralSortMerger$ThreadBase.run(UnilateralSortMerger.java:827)
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