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Posted to commits@ctakes.apache.org by ma...@apache.org on 2013/01/15 17:32:19 UTC
svn commit: r1433501 -
/incubator/ctakes/trunk/ctakes-assertion-zoner/src/main/resources/org/mitre/medfacts/uima/mayo_sections.xml
Author: mattcoarr
Date: Tue Jan 15 16:32:19 2013
New Revision: 1433501
URL: http://svn.apache.org/viewvc?rev=1433501&view=rev
Log:
adding mayo_sections.xml
Added:
incubator/ctakes/trunk/ctakes-assertion-zoner/src/main/resources/org/mitre/medfacts/uima/mayo_sections.xml
Added: incubator/ctakes/trunk/ctakes-assertion-zoner/src/main/resources/org/mitre/medfacts/uima/mayo_sections.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-assertion-zoner/src/main/resources/org/mitre/medfacts/uima/mayo_sections.xml?rev=1433501&view=auto
==============================================================================
--- incubator/ctakes/trunk/ctakes-assertion-zoner/src/main/resources/org/mitre/medfacts/uima/mayo_sections.xml (added)
+++ incubator/ctakes/trunk/ctakes-assertion-zoner/src/main/resources/org/mitre/medfacts/uima/mayo_sections.xml Tue Jan 15 16:32:19 2013
@@ -0,0 +1,408 @@
+<?xml version="1.0" encoding="UTF-8"?>
+
+<!--
+ Document : mayo_sections.xml.xml
+ Created on : June 15, 2012, 5:34 PM
+ Author : ROBYN
+ Description:
+ creates a translation for the MITRE Zoner from Mayo section headers
+ to MITRE sections
+-->
+
+<root>
+<sections>
+ <!-- ADDENDUM -->
+ <section>
+ <regex>((addendum)\s*\:)</regex>
+ <label>addendum</label>
+ </section>
+ <!-- Revision History -->
+ <section>
+ <regex>(\[start section id=\"20100\"\])</regex>
+ <label>transcription details</label>
+ </section>
+ <!-- Referral Source -->
+ <section>
+ <regex>(\[start section id=\"20101\"\])</regex>
+ <label>attending physician</label>
+ </section>
+ <!-- Chief Complaint / Reason for Visit -->
+ <section>
+ <regex>(\[start section id=\"20102\"\])</regex>
+ <label>chief complaint</label>
+ </section>
+ <!-- History of Present Illness -->
+ <section>
+ <regex>(\[start section id=\"20103\"\])</regex>
+ <label>history of present illness</label>
+ </section>
+ <!-- Current Medications -->
+ <section>
+ <regex>(\[start section id=\"20104\"\])</regex>
+ <label>medication</label>
+ </section>
+ <!-- Allergies -->
+ <section>
+ <regex>(\[start section id=\"20105\"\])</regex>
+ <label>allergy</label>
+ </section>
+ <!-- System Reviews -->
+ <section>
+ <regex>(\[start section id=\"20106\"\])</regex>
+ <label>review of systems</label>
+ </section>
+ <!-- Past Medical / Surgical History -->
+ <section>
+ <regex>(\[start section id=\"20107\"\])</regex>
+ <label>past medical history</label>
+ </section>
+ <!-- Social History -->
+ <section>
+ <regex>(\[start section id=\"20108\"\])</regex>
+ <label>social history</label>
+ </section>
+ <!-- Family History -->
+ <section>
+ <regex>(\[start section id=\"20109\"\])</regex>
+ <label>family history</label>
+ </section>
+ <!-- Vital Signs -->
+ <section>
+ <regex>(\[start section id=\"20110\"\])</regex>
+ <label>physical examination</label>
+ </section>
+ <!-- Physical Examination -->
+ <section>
+ <regex>(\[start section id=\"20111\"\])</regex>
+ <label>physical examination</label>
+ </section>
+ <!-- Impression / Report / Plan -->
+ <section>
+ <regex>(\[start section id=\"20112\"\])</regex>
+ <label>impression/plan</label>
+ </section>
+ <!-- Diagnosis -->
+ <section>
+ <regex>(\[start section id=\"20113\"\])</regex>
+ <label>diagnoses</label>
+ </section>
+ <!-- Administrative -->
+ <section>
+ <regex>(\[start section id=\"20114\"\])</regex>
+ <label>transcription details</label>
+ </section>
+ <!-- Special Instructions -->
+ <section>
+ <regex>(\[start section id=\"20115\"\])</regex>
+ <label>instructions</label>
+ </section>
+ <!-- Advance Directives -->
+ <section>
+ <regex>(\[start section id=\"20116\"\])</regex>
+ <label>instructions</label>
+ </section>
+ <!-- Service Contributors -->
+ <section>
+ <regex>(\[start section id=\"20117\"\])</regex>
+ <label>service specialty</label>
+ </section>
+ <!-- Immunizations -->
+ <section>
+ <regex>(\[start section id=\"20118\"\])</regex>
+ <label>other treatments/procedures</label>
+ </section>
+ <!-- Admission Findings / Test Results -->
+ <section>
+ <regex>(\[start section id=\"20119\"\])</regex>
+ <label>clinical findings</label>
+ </section>
+ <!-- Problem Oriented Hosp. Course (I/O/P) -->
+ <section>
+ <regex>(\[start section id=\"20120\"\])</regex>
+ <label>hospital course</label>
+ </section>
+ <!-- Final Physical Examination -->
+ <section>
+ <regex>(\[start section id=\"20121\"\])</regex>
+ <label>physical examination</label>
+ </section>
+ <!-- Adverse Reactions -->
+ <section>
+ <regex>(\[start section id=\"20122\"\])</regex>
+ <label>complications</label>
+ </section>
+ <!-- Diet / Nutrition -->
+ <section>
+ <regex>(\[start section id=\"20123\"\])</regex>
+ <label>diet</label>
+ </section>
+ <!-- Discharge Condition -->
+ <section>
+ <regex>(\[start section id=\"20124\"\])</regex>
+ <label>condition</label>
+ </section>
+ <!-- Condition at Discharge -->
+ <section>
+ <regex>(\[start section id=\"20125\"\])</regex>
+ <label>condition</label>
+ </section>
+ <!-- Ongoing Care Orders -->
+ <section>
+ <regex>(\[start section id=\"20126\"\])</regex>
+ <label>follow-up</label>
+ </section>
+ <!-- Admission Physical Exam -->
+ <section>
+ <regex>(\[start section id=\"20127\"\])</regex>
+ <label>physical examination</label>
+ </section>
+ <!-- Ongoing Care -->
+ <section>
+ <regex>(\[start section id=\"20128\"\])</regex>
+ <label>follow-up</label>
+ </section>
+ <!-- Follow Up Agreements -->
+ <section>
+ <regex>(\[start section id=\"20129\"\])</regex>
+ <label>follow-up</label>
+ </section>
+ <!-- PFH and CVI Dates -->
+ <section>
+ <regex>(\[start section id=\"20130\"\])</regex>
+ <label>transcription details</label>
+ </section>
+ <!-- there is no 20131 -->
+ <!-- Findings/Procedures/Surgeries -->
+ <section>
+ <regex>(\[start section id=\"20132\"\])</regex>
+ <label>operations/procedures</label>
+ </section>
+ <!-- Admission Medications -->
+ <section>
+ <regex>(\[start section id=\"20133\"\])</regex>
+ <label>medication</label>
+ </section>
+ <!-- Discharge Activity -->
+ <section>
+ <regex>(\[start section id=\"20134\"\])</regex>
+ <label>discharge activity</label>
+ </section>
+ <!-- Anticipated Problems and Suggested Interventions -->
+ <section>
+ <regex>(\[start section id=\"20135\"\])</regex>
+ <label>instructions</label>
+ </section>
+ <!-- Post op services related to Surgical Procedure -->
+ <section>
+ <regex>(\[start section id=\"20136\"\])</regex>
+ <label>follow-up</label>
+ </section>
+ <!-- EMTALA Statement -->
+ <section>
+ <regex>(\[start section id=\"20137\"\])</regex>
+ <label>instructions</label>
+ </section>
+ <!-- Patient Education -->
+ <section>
+ <regex>(\[start section id=\"20138\"\])</regex>
+ <label>instructions</label>
+ </section>
+ <!-- Principle Diagnosis -->
+ <section>
+ <regex>(\[start section id=\"20139\"\])</regex>
+ <label>diagnoses</label>
+ </section>
+ <!-- Secondary Diagnoses -->
+ <section>
+ <regex>(\[start section id=\"20140\"\])</regex>
+ <label>diagnoses</label>
+ </section>
+ <!-- Final Pathology Diagnosis -->
+ <section>
+ <regex>(\[start section id=\"20141\"\])</regex>
+ <label>diagnoses</label>
+ </section>
+ <!-- Supervisor Present -->
+ <section>
+ <regex>(\[start section id=\"20142\"\])</regex>
+ <label>attending physician</label>
+ </section>
+ <!-- Pre-Procedure Information -->
+ <section>
+ <regex>(\[start section id=\"20143\"\])</regex>
+ <label>procedure description</label>
+ </section>
+ <!-- Precedure Information -->
+ <section>
+ <regex>(\[start section id=\"20144\"\])</regex>
+ <label>procedure description</label>
+ </section>
+ <!-- Subjective -->
+ <section>
+ <regex>(\[start section id=\"20145\"\])</regex>
+ <label>subjective</label>
+ </section>
+ <!-- Labs -->
+ <section>
+ <regex>(\[start section id=\"20146\"\])</regex>
+ <label>laboratory</label>
+ </section>
+ <!-- Wound -->
+ <section>
+ <regex>(\[start section id=\"20147\"\])</regex>
+ <label>diagnoses</label>
+ </section>
+ <!-- Informed Consent -->
+ <section>
+ <regex>(\[start section id=\"20148\"\])</regex>
+ <label>instructions</label>
+ </section>
+ <!-- Post-Procedure Film -->
+ <section>
+ <regex>(\[start section id=\"20149\"\])</regex>
+ <label>radiology</label>
+ </section>
+ <!-- Patient Disposition -->
+ <section>
+ <regex>(\[start section id=\"20150\"\])</regex>
+ <label>disposition</label>
+ </section>
+ <!-- Specimins Removed -->
+ <section>
+ <regex>(\[start section id=\"20151\"\])</regex>
+ <label>laboratory</label>
+ </section>
+ <!-- Findings -->
+ <section>
+ <regex>(\[start section id=\"20152\"\])</regex>
+ <label>clinical findings</label>
+ </section>
+ <!-- Primary Surgeon(s) -->
+ <section>
+ <regex>(\[start section id=\"20153\"\])</regex>
+ <label>attending physician</label>
+ </section>
+ <!-- Assistants -->
+ <section>
+ <regex>(\[start section id=\"20154\"\])</regex>
+ <label>attending physician</label>
+ </section>
+ <!-- Complications -->
+ <section>
+ <regex>(\[start section id=\"20155\"\])</regex>
+ <label>complications</label>
+ </section>
+ <!-- Drains -->
+ <section>
+ <regex>(\[start section id=\"20156\"\])</regex>
+ <label>other treatments/procedures</label>
+ </section>
+ <!-- Anesthesia -->
+ <section>
+ <regex>(\[start section id=\"20157\"\])</regex>
+ <label>other treatments/procedures</label>
+ </section>
+ <!-- Fluids -->
+ <section>
+ <regex>(\[start section id=\"20158\"\])</regex>
+ <label>other treatments/procedures</label>
+ </section>
+ <!-- Estimated Blood Loss -->
+ <section>
+ <regex>(\[start section id=\"20159\"\])</regex>
+ <label>clinical findings</label>
+ </section>
+ <!-- Prescriptions -->
+ <section>
+ <regex>(\[start section id=\"20160\"\])</regex>
+ <label>medication</label>
+ </section>
+ <!-- Follow-Up Letter -->
+ <section>
+ <regex>(\[start section id=\"20161\"\])</regex>
+ <label>follow-up</label>
+ </section>
+ <!-- May Return to Work -->
+ <section>
+ <regex>(\[start section id=\"20162\"\])</regex>
+ <label>work return</label>
+ </section>
+ <!-- Instructions to Include -->
+ <section>
+ <regex>(\[start section id=\"20163\"\])</regex>
+ <label>instructions</label>
+ </section>
+ <!-- Procedure Performed and Description -->
+ <section>
+ <regex>(\[start section id=\"20164\"\])</regex>
+ <label>procedure description</label>
+ </section>
+ <!-- Post-Procedure Diagnosis -->
+ <section>
+ <regex>(\[start section id=\"20165\"\])</regex>
+ <label>diagnoses</label>
+ </section>
+ <!-- Reason for Transfer -->
+ <section>
+ <regex>(\[start section id=\"20166\"\])</regex>
+ <label>reason for hospitalization</label>
+ </section>
+ <!-- Condition at Transfer -->
+ <section>
+ <regex>(\[start section id=\"20167\"\])</regex>
+ <label>condition</label>
+ </section>
+ <!-- Summary of Care -->
+ <section>
+ <regex>(\[start section id=\"20168\"\])</regex>
+ <label>other treatments/procedures</label>
+ </section>
+ <!-- Physician Attestation -->
+ <section>
+ <regex>(\[start section id=\"20169\"\])</regex>
+ <label>attending physician</label>
+ </section>
+ <!-- Brief Hospital Course -->
+ <section>
+ <regex>(\[start section id=\"20170\"\])</regex>
+ <label>hospital course</label>
+ </section>
+ <!-- there is no 20171 -->
+ <!-- Condition at Discharge -->
+ <section>
+ <regex>(\[start section id=\"20172\"\])</regex>
+ <label>condition</label>
+ </section>
+ <!-- Discharge Disposition -->
+ <section>
+ <regex>(\[start section id=\"20173\"\])</regex>
+ <label>disposition</label>
+ </section>
+ <!-- Contact Information -->
+ <section>
+ <regex>(\[start section id=\"20174\"\])</regex>
+ <label>transcription details</label>
+ </section>
+ <!-- Service Contributor / SUM2 -->
+ <section>
+ <regex>(\[start section id=\"20175\"\])</regex>
+ <label>attending physician</label>
+ </section>
+ <!-- Instructions for Continuing care -->
+ <section>
+ <regex>(\[start section id=\"20176\"\])</regex>
+ <label>instructions</label>
+ </section>
+ <!-- There is no 20177 -->
+ <!-- Consults -->
+ <section>
+ <regex>(\[start section id=\"20178\"\])</regex>
+ <label>consultants</label>
+ </section>
+ <!-- Radiological Review -->
+ <section>
+ <regex>(\[start section id=\"20179\"\])</regex>
+ <label>radiology</label>
+ </section>
+</sections>
+</root>