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Posted to dev@taverna.apache.org by Willy Aguirre <ma...@gmail.com> on 2016/03/07 19:48:53 UTC
[GSoC 2016] Hi!!
Hi!
I'm Willy Aguirre from Lima Peru Actually I'm studing at UPC(
http://epe.upc.edu.pe/)
I don't have experience in Workflow System but I used BPMN (Bisagi) I think
is new experience for me.
I'm working as a java developer and also I used Play Framework 1.* it uses
yaml
https://pe.linkedin.com/in/willyaguirre
I passed GSoC 2015 for Apache Aurora
https://issues.apache.org/jira/browse/AURORA-1164
I'm interesting in these ideas
https://issues.apache.org/jira/browse/TAVERNA-881
https://issues.apache.org/jira/browse/TAVERNA-879
<https://issues.apache.org/jira/browse/AURORA-1164>
Cheers!
Willy
<https://pe.linkedin.com/in/willyaguirre>
--
Willy Aguirre | @willrre
Blog: http://osgux.tumblr.com/
Mozilla Rep: https://reps.mozilla.org/u/Willy/
Mozilla Hispano - Willyaguirre
<https://www.mozilla-hispano.org/documentacion/Usuario:Willyaguirre>
Re: [GSoC 2016] Hi!!
Posted by Alan Williams <al...@googlemail.com>.
On 15-Mar-16 19:35, Stian Soiland-Reyes wrote:
> OK, I've updated the wiki to say you prefer 900 :)
>
> Task TAVERNA-900 includes all of the 5 (now 6!) CWL sub-tasks - or a
> selection of those. We never intended for the GSOC student to complete
> all of those, but completing more than one task would be brilliant!
>
> You can work on your project proposal and detail what work you are
> considering to focus on, in which order. Of course with more tasks you
> will need to think a bit more about milestones, and declare which
> tasks would be optional if you have enough time (and likewise what
> could be skipped if you run short!).
>
> GSOC students - your proposal and tasks does not have to match the
> Jira description - it is better if it doesn't and show what you have
> already investigated and planned! But it's OK if the first part of
> the project is to investigate different solutions/libraries and try
> out some quick manual prototypes.
Also, (to repeat myself) when writing your proposal, do not forget to
consider:
(a) how you will become involved in the developer community,
(b) how you will involve any interested users in evaluation of your work,
(c) how you will test the work
(d) the schedule, if possible with milestones
(e) any time(s) you will not be available.
Alan
Re: [GSoC 2016] Hi!!
Posted by Stian Soiland-Reyes <st...@apache.org>.
OK, I've updated the wiki to say you prefer 900 :)
Task TAVERNA-900 includes all of the 5 (now 6!) CWL sub-tasks - or a
selection of those. We never intended for the GSOC student to complete
all of those, but completing more than one task would be brilliant!
You can work on your project proposal and detail what work you are
considering to focus on, in which order. Of course with more tasks you
will need to think a bit more about milestones, and declare which
tasks would be optional if you have enough time (and likewise what
could be skipped if you run short!).
GSOC students - your proposal and tasks does not have to match the
Jira description - it is better if it doesn't and show what you have
already investigated and planned! But it's OK if the first part of
the project is to investigate different solutions/libraries and try
out some quick manual prototypes.
On 14 March 2016 at 20:14, Willy Aguirre <ma...@gmail.com> wrote:
> Hi Stian
>
> I am little confused =/
> https://cwiki.apache.org/confluence/display/TAVERNADEV/2016-03+GSOC+2016
> I prefer to do task taverna-900
>
> Regards,
> Willy
>
> 2016-03-14 12:30 GMT-05:00 Stian Soiland-Reyes <st...@apache.org>:
>
>> Save to CWL would be done as an "Export to CWL" within the SCUFL2
>> libraries. I don't think we need to focus on the GUI side yet as that
>> should be trivial - but integration with the tavtool library would be
>> great! (See the newest release email)
>>
>>
>> So given a t2flow input (or Taverna 3 Workflow Bundle) the output
>> should look somewhat like the YAML examples from CWL:
>>
>>
>> https://github.com/common-workflow-language/workflows/tree/master/workflows/hello
>>
>>
>>
>> On 14 March 2016 at 13:59, Willy Aguirre <ma...@gmail.com> wrote:
>> > thanks!! =D
>> >
>> > Hi Stian about
>> https://github.com/apache/incubator-taverna-language/tree/master/taverna-scufl2-examples
>> >
>> >
>> > Is it idea to export to CWL or save to as cwl (yaml)
>> >
>> > https://gist.github.com/marti1125/4339ed5e595fc8fec19b (xml)
>> >
>> > I'm trying this https://taverna.incubator.apache.org/download/language/
>> >
>> > Cheers!!
>> > Willy
>> >
>> > 2016-03-14 7:17 GMT-05:00 Stian Soiland-Reyes <st...@apache.org>:
>> >
>> >> In Taverna 2.5, Soaplab is only part of the "Bioinformatics" and
>> >> "Enterprise" editions.
>> >>
>> >> If you installed the "Core" edition you can use Advanced -> Updates and
>> >> Plugins in the menu, then [Find new plugins] to install the
>> "Bioinformatics
>> >> services". After a restart you should have Soaplab support.
>> >>
>> >>
>> >>
>> >>
>> >>
>> >> On 14 March 2016 at 06:32, Willy Aguirre <ma...@gmail.com> wrote:
>> >>
>> >> > Hi! I am trying to understand the tutorial but in the part of import
>> >> > services does not exist soaplab
>> >> >
>> >> > how to add as a new plugin
>> >> >
>> >> > https://github.com/apache/incubator-taverna-plugin-bioinformatics
>> >> >
>> >> >
>> >> >
>> >> > **
>> >> > Cheers!
>> >> >
>> >> >
>> >> > 2016-03-13 12:54 GMT-05:00 Alan Williams <al...@googlemail.com>:
>> >> >
>> >> >> On 13-Mar-16 15:23, Willy Aguirre wrote:
>> >> >>
>> >> >>> could you give me some steps? I'm reading about CWL
>> >> >>>
>> >> >>
>> >> >> I think the easiest thing may be to look at a very simple CWL
>> workflow
>> >> >> and compare it to a simple workflow in SCUFL2.
>> >> >>
>> >> >> A workflow for echoing the input parameter is at
>> >> >>
>> >> >>
>> >> >>
>> >>
>> https://github.com/common-workflow-language/workflows/blob/master/workflows/hello/hello-param.cwl
>> >> >>
>> >> >> A similar SCUFL2 workflow is in
>> >> >>
>> >> >>
>> >> >>
>> >>
>> https://github.com/apache/incubator-taverna-language/blob/master/taverna-scufl2-examples/examples/helloanyone.wfbundle
>> >> >>
>> >> >> or the JSON may be easier to understand:
>> >> >>
>> >> >>
>> >> >>
>> >>
>> https://github.com/apache/incubator-taverna-language/blob/master/taverna-scufl2-examples/examples/helloanyone.json
>> >> >>
>> >> >> Alan
>> >> >>
>> >> >
>> >> >
>> >> >
>> >> > --
>> >> > Willy Aguirre | @willrre
>> >> > Blog: http://osgux.tumblr.com/
>> >> > Mozilla Rep: https://reps.mozilla.org/u/Willy/
>> >> > Mozilla Hispano - Willyaguirre
>> >> > <https://www.mozilla-hispano.org/documentacion/Usuario:Willyaguirre>
>> >> >
>> >>
>> >>
>> >>
>> >> --
>> >> Stian Soiland-Reyes
>> >> Apache Taverna (incubating), Apache Commons RDF (incubating)
>> >> http://orcid.org/0000-0001-9842-9718
>> >>
>> >
>> >
>> >
>> > --
>> > Willy Aguirre | @willrre
>> > Blog: http://osgux.tumblr.com/
>> > Mozilla Rep: https://reps.mozilla.org/u/Willy/
>> > Mozilla Hispano - Willyaguirre
>> > <https://www.mozilla-hispano.org/documentacion/Usuario:Willyaguirre>
>>
>>
>>
>> --
>> Stian Soiland-Reyes
>> Apache Taverna (incubating), Apache Commons RDF (incubating)
>> http://orcid.org/0000-0001-9842-9718
>>
>
>
>
> --
> Willy Aguirre | @willrre
> Blog: http://osgux.tumblr.com/
> Mozilla Rep: https://reps.mozilla.org/u/Willy/
> Mozilla Hispano - Willyaguirre
> <https://www.mozilla-hispano.org/documentacion/Usuario:Willyaguirre>
--
Stian Soiland-Reyes
Apache Taverna (incubating), Apache Commons RDF (incubating)
http://orcid.org/0000-0001-9842-9718
Re: [GSoC 2016] Hi!!
Posted by Willy Aguirre <ma...@gmail.com>.
Hi Stian
I am little confused =/
https://cwiki.apache.org/confluence/display/TAVERNADEV/2016-03+GSOC+2016
I prefer to do task taverna-900
Regards,
Willy
2016-03-14 12:30 GMT-05:00 Stian Soiland-Reyes <st...@apache.org>:
> Save to CWL would be done as an "Export to CWL" within the SCUFL2
> libraries. I don't think we need to focus on the GUI side yet as that
> should be trivial - but integration with the tavtool library would be
> great! (See the newest release email)
>
>
> So given a t2flow input (or Taverna 3 Workflow Bundle) the output
> should look somewhat like the YAML examples from CWL:
>
>
> https://github.com/common-workflow-language/workflows/tree/master/workflows/hello
>
>
>
> On 14 March 2016 at 13:59, Willy Aguirre <ma...@gmail.com> wrote:
> > thanks!! =D
> >
> > Hi Stian about
> https://github.com/apache/incubator-taverna-language/tree/master/taverna-scufl2-examples
> >
> >
> > Is it idea to export to CWL or save to as cwl (yaml)
> >
> > https://gist.github.com/marti1125/4339ed5e595fc8fec19b (xml)
> >
> > I'm trying this https://taverna.incubator.apache.org/download/language/
> >
> > Cheers!!
> > Willy
> >
> > 2016-03-14 7:17 GMT-05:00 Stian Soiland-Reyes <st...@apache.org>:
> >
> >> In Taverna 2.5, Soaplab is only part of the "Bioinformatics" and
> >> "Enterprise" editions.
> >>
> >> If you installed the "Core" edition you can use Advanced -> Updates and
> >> Plugins in the menu, then [Find new plugins] to install the
> "Bioinformatics
> >> services". After a restart you should have Soaplab support.
> >>
> >>
> >>
> >>
> >>
> >> On 14 March 2016 at 06:32, Willy Aguirre <ma...@gmail.com> wrote:
> >>
> >> > Hi! I am trying to understand the tutorial but in the part of import
> >> > services does not exist soaplab
> >> >
> >> > how to add as a new plugin
> >> >
> >> > https://github.com/apache/incubator-taverna-plugin-bioinformatics
> >> >
> >> >
> >> >
> >> > **
> >> > Cheers!
> >> >
> >> >
> >> > 2016-03-13 12:54 GMT-05:00 Alan Williams <al...@googlemail.com>:
> >> >
> >> >> On 13-Mar-16 15:23, Willy Aguirre wrote:
> >> >>
> >> >>> could you give me some steps? I'm reading about CWL
> >> >>>
> >> >>
> >> >> I think the easiest thing may be to look at a very simple CWL
> workflow
> >> >> and compare it to a simple workflow in SCUFL2.
> >> >>
> >> >> A workflow for echoing the input parameter is at
> >> >>
> >> >>
> >> >>
> >>
> https://github.com/common-workflow-language/workflows/blob/master/workflows/hello/hello-param.cwl
> >> >>
> >> >> A similar SCUFL2 workflow is in
> >> >>
> >> >>
> >> >>
> >>
> https://github.com/apache/incubator-taverna-language/blob/master/taverna-scufl2-examples/examples/helloanyone.wfbundle
> >> >>
> >> >> or the JSON may be easier to understand:
> >> >>
> >> >>
> >> >>
> >>
> https://github.com/apache/incubator-taverna-language/blob/master/taverna-scufl2-examples/examples/helloanyone.json
> >> >>
> >> >> Alan
> >> >>
> >> >
> >> >
> >> >
> >> > --
> >> > Willy Aguirre | @willrre
> >> > Blog: http://osgux.tumblr.com/
> >> > Mozilla Rep: https://reps.mozilla.org/u/Willy/
> >> > Mozilla Hispano - Willyaguirre
> >> > <https://www.mozilla-hispano.org/documentacion/Usuario:Willyaguirre>
> >> >
> >>
> >>
> >>
> >> --
> >> Stian Soiland-Reyes
> >> Apache Taverna (incubating), Apache Commons RDF (incubating)
> >> http://orcid.org/0000-0001-9842-9718
> >>
> >
> >
> >
> > --
> > Willy Aguirre | @willrre
> > Blog: http://osgux.tumblr.com/
> > Mozilla Rep: https://reps.mozilla.org/u/Willy/
> > Mozilla Hispano - Willyaguirre
> > <https://www.mozilla-hispano.org/documentacion/Usuario:Willyaguirre>
>
>
>
> --
> Stian Soiland-Reyes
> Apache Taverna (incubating), Apache Commons RDF (incubating)
> http://orcid.org/0000-0001-9842-9718
>
--
Willy Aguirre | @willrre
Blog: http://osgux.tumblr.com/
Mozilla Rep: https://reps.mozilla.org/u/Willy/
Mozilla Hispano - Willyaguirre
<https://www.mozilla-hispano.org/documentacion/Usuario:Willyaguirre>
Re: [GSoC 2016] Hi!!
Posted by Stian Soiland-Reyes <st...@apache.org>.
Save to CWL would be done as an "Export to CWL" within the SCUFL2
libraries. I don't think we need to focus on the GUI side yet as that
should be trivial - but integration with the tavtool library would be
great! (See the newest release email)
So given a t2flow input (or Taverna 3 Workflow Bundle) the output
should look somewhat like the YAML examples from CWL:
https://github.com/common-workflow-language/workflows/tree/master/workflows/hello
On 14 March 2016 at 13:59, Willy Aguirre <ma...@gmail.com> wrote:
> thanks!! =D
>
> Hi Stian about https://github.com/apache/incubator-taverna-language/tree/master/taverna-scufl2-examples
>
>
> Is it idea to export to CWL or save to as cwl (yaml)
>
> https://gist.github.com/marti1125/4339ed5e595fc8fec19b (xml)
>
> I'm trying this https://taverna.incubator.apache.org/download/language/
>
> Cheers!!
> Willy
>
> 2016-03-14 7:17 GMT-05:00 Stian Soiland-Reyes <st...@apache.org>:
>
>> In Taverna 2.5, Soaplab is only part of the "Bioinformatics" and
>> "Enterprise" editions.
>>
>> If you installed the "Core" edition you can use Advanced -> Updates and
>> Plugins in the menu, then [Find new plugins] to install the "Bioinformatics
>> services". After a restart you should have Soaplab support.
>>
>>
>>
>>
>>
>> On 14 March 2016 at 06:32, Willy Aguirre <ma...@gmail.com> wrote:
>>
>> > Hi! I am trying to understand the tutorial but in the part of import
>> > services does not exist soaplab
>> >
>> > how to add as a new plugin
>> >
>> > https://github.com/apache/incubator-taverna-plugin-bioinformatics
>> >
>> >
>> >
>> > **
>> > Cheers!
>> >
>> >
>> > 2016-03-13 12:54 GMT-05:00 Alan Williams <al...@googlemail.com>:
>> >
>> >> On 13-Mar-16 15:23, Willy Aguirre wrote:
>> >>
>> >>> could you give me some steps? I'm reading about CWL
>> >>>
>> >>
>> >> I think the easiest thing may be to look at a very simple CWL workflow
>> >> and compare it to a simple workflow in SCUFL2.
>> >>
>> >> A workflow for echoing the input parameter is at
>> >>
>> >>
>> >>
>> https://github.com/common-workflow-language/workflows/blob/master/workflows/hello/hello-param.cwl
>> >>
>> >> A similar SCUFL2 workflow is in
>> >>
>> >>
>> >>
>> https://github.com/apache/incubator-taverna-language/blob/master/taverna-scufl2-examples/examples/helloanyone.wfbundle
>> >>
>> >> or the JSON may be easier to understand:
>> >>
>> >>
>> >>
>> https://github.com/apache/incubator-taverna-language/blob/master/taverna-scufl2-examples/examples/helloanyone.json
>> >>
>> >> Alan
>> >>
>> >
>> >
>> >
>> > --
>> > Willy Aguirre | @willrre
>> > Blog: http://osgux.tumblr.com/
>> > Mozilla Rep: https://reps.mozilla.org/u/Willy/
>> > Mozilla Hispano - Willyaguirre
>> > <https://www.mozilla-hispano.org/documentacion/Usuario:Willyaguirre>
>> >
>>
>>
>>
>> --
>> Stian Soiland-Reyes
>> Apache Taverna (incubating), Apache Commons RDF (incubating)
>> http://orcid.org/0000-0001-9842-9718
>>
>
>
>
> --
> Willy Aguirre | @willrre
> Blog: http://osgux.tumblr.com/
> Mozilla Rep: https://reps.mozilla.org/u/Willy/
> Mozilla Hispano - Willyaguirre
> <https://www.mozilla-hispano.org/documentacion/Usuario:Willyaguirre>
--
Stian Soiland-Reyes
Apache Taverna (incubating), Apache Commons RDF (incubating)
http://orcid.org/0000-0001-9842-9718
Re: [GSoC 2016] Hi!!
Posted by Willy Aguirre <ma...@gmail.com>.
thanks!! =D
Hi Stian about https://github.com/apache/incubator-taverna-language/tree/master/taverna-scufl2-examples
Is it idea to export to CWL or save to as cwl (yaml)
https://gist.github.com/marti1125/4339ed5e595fc8fec19b (xml)
I'm trying this https://taverna.incubator.apache.org/download/language/
Cheers!!
Willy
2016-03-14 7:17 GMT-05:00 Stian Soiland-Reyes <st...@apache.org>:
> In Taverna 2.5, Soaplab is only part of the "Bioinformatics" and
> "Enterprise" editions.
>
> If you installed the "Core" edition you can use Advanced -> Updates and
> Plugins in the menu, then [Find new plugins] to install the "Bioinformatics
> services". After a restart you should have Soaplab support.
>
>
>
>
>
> On 14 March 2016 at 06:32, Willy Aguirre <ma...@gmail.com> wrote:
>
> > Hi! I am trying to understand the tutorial but in the part of import
> > services does not exist soaplab
> >
> > how to add as a new plugin
> >
> > https://github.com/apache/incubator-taverna-plugin-bioinformatics
> >
> >
> >
> > **
> > Cheers!
> >
> >
> > 2016-03-13 12:54 GMT-05:00 Alan Williams <al...@googlemail.com>:
> >
> >> On 13-Mar-16 15:23, Willy Aguirre wrote:
> >>
> >>> could you give me some steps? I'm reading about CWL
> >>>
> >>
> >> I think the easiest thing may be to look at a very simple CWL workflow
> >> and compare it to a simple workflow in SCUFL2.
> >>
> >> A workflow for echoing the input parameter is at
> >>
> >>
> >>
> https://github.com/common-workflow-language/workflows/blob/master/workflows/hello/hello-param.cwl
> >>
> >> A similar SCUFL2 workflow is in
> >>
> >>
> >>
> https://github.com/apache/incubator-taverna-language/blob/master/taverna-scufl2-examples/examples/helloanyone.wfbundle
> >>
> >> or the JSON may be easier to understand:
> >>
> >>
> >>
> https://github.com/apache/incubator-taverna-language/blob/master/taverna-scufl2-examples/examples/helloanyone.json
> >>
> >> Alan
> >>
> >
> >
> >
> > --
> > Willy Aguirre | @willrre
> > Blog: http://osgux.tumblr.com/
> > Mozilla Rep: https://reps.mozilla.org/u/Willy/
> > Mozilla Hispano - Willyaguirre
> > <https://www.mozilla-hispano.org/documentacion/Usuario:Willyaguirre>
> >
>
>
>
> --
> Stian Soiland-Reyes
> Apache Taverna (incubating), Apache Commons RDF (incubating)
> http://orcid.org/0000-0001-9842-9718
>
--
Willy Aguirre | @willrre
Blog: http://osgux.tumblr.com/
Mozilla Rep: https://reps.mozilla.org/u/Willy/
Mozilla Hispano - Willyaguirre
<https://www.mozilla-hispano.org/documentacion/Usuario:Willyaguirre>
Re: [GSoC 2016] Hi!!
Posted by Stian Soiland-Reyes <st...@apache.org>.
In Taverna 2.5, Soaplab is only part of the "Bioinformatics" and
"Enterprise" editions.
If you installed the "Core" edition you can use Advanced -> Updates and
Plugins in the menu, then [Find new plugins] to install the "Bioinformatics
services". After a restart you should have Soaplab support.
On 14 March 2016 at 06:32, Willy Aguirre <ma...@gmail.com> wrote:
> Hi! I am trying to understand the tutorial but in the part of import
> services does not exist soaplab
>
> how to add as a new plugin
>
> https://github.com/apache/incubator-taverna-plugin-bioinformatics
>
>
>
> **
> Cheers!
>
>
> 2016-03-13 12:54 GMT-05:00 Alan Williams <al...@googlemail.com>:
>
>> On 13-Mar-16 15:23, Willy Aguirre wrote:
>>
>>> could you give me some steps? I'm reading about CWL
>>>
>>
>> I think the easiest thing may be to look at a very simple CWL workflow
>> and compare it to a simple workflow in SCUFL2.
>>
>> A workflow for echoing the input parameter is at
>>
>>
>> https://github.com/common-workflow-language/workflows/blob/master/workflows/hello/hello-param.cwl
>>
>> A similar SCUFL2 workflow is in
>>
>>
>> https://github.com/apache/incubator-taverna-language/blob/master/taverna-scufl2-examples/examples/helloanyone.wfbundle
>>
>> or the JSON may be easier to understand:
>>
>>
>> https://github.com/apache/incubator-taverna-language/blob/master/taverna-scufl2-examples/examples/helloanyone.json
>>
>> Alan
>>
>
>
>
> --
> Willy Aguirre | @willrre
> Blog: http://osgux.tumblr.com/
> Mozilla Rep: https://reps.mozilla.org/u/Willy/
> Mozilla Hispano - Willyaguirre
> <https://www.mozilla-hispano.org/documentacion/Usuario:Willyaguirre>
>
--
Stian Soiland-Reyes
Apache Taverna (incubating), Apache Commons RDF (incubating)
http://orcid.org/0000-0001-9842-9718
Re: [GSoC 2016] Hi!!
Posted by Willy Aguirre <ma...@gmail.com>.
Hi! I am trying to understand the tutorial but in the part of import
services does not exist soaplab
how to add as a new plugin
https://github.com/apache/incubator-taverna-plugin-bioinformatics
**
Cheers!
2016-03-13 12:54 GMT-05:00 Alan Williams <al...@googlemail.com>:
> On 13-Mar-16 15:23, Willy Aguirre wrote:
>
>> could you give me some steps? I'm reading about CWL
>>
>
> I think the easiest thing may be to look at a very simple CWL workflow and
> compare it to a simple workflow in SCUFL2.
>
> A workflow for echoing the input parameter is at
>
>
> https://github.com/common-workflow-language/workflows/blob/master/workflows/hello/hello-param.cwl
>
> A similar SCUFL2 workflow is in
>
>
> https://github.com/apache/incubator-taverna-language/blob/master/taverna-scufl2-examples/examples/helloanyone.wfbundle
>
> or the JSON may be easier to understand:
>
>
> https://github.com/apache/incubator-taverna-language/blob/master/taverna-scufl2-examples/examples/helloanyone.json
>
> Alan
>
--
Willy Aguirre | @willrre
Blog: http://osgux.tumblr.com/
Mozilla Rep: https://reps.mozilla.org/u/Willy/
Mozilla Hispano - Willyaguirre
<https://www.mozilla-hispano.org/documentacion/Usuario:Willyaguirre>
Re: [GSoC 2016] Hi!!
Posted by Alan Williams <al...@googlemail.com>.
On 13-Mar-16 15:23, Willy Aguirre wrote:
> could you give me some steps? I'm reading about CWL
I think the easiest thing may be to look at a very simple CWL workflow
and compare it to a simple workflow in SCUFL2.
A workflow for echoing the input parameter is at
https://github.com/common-workflow-language/workflows/blob/master/workflows/hello/hello-param.cwl
A similar SCUFL2 workflow is in
https://github.com/apache/incubator-taverna-language/blob/master/taverna-scufl2-examples/examples/helloanyone.wfbundle
or the JSON may be easier to understand:
https://github.com/apache/incubator-taverna-language/blob/master/taverna-scufl2-examples/examples/helloanyone.json
Alan
Re: [GSoC 2016] Hi!!
Posted by Willy Aguirre <ma...@gmail.com>.
could you give me some steps? I'm reading about CWL
2016-03-13 10:23 GMT-05:00 Willy Aguirre <ma...@gmail.com>:
> Thanks for answer! So I prefer to implement CWL
>
> https://github.com/common-workflow-language
>
> 2016-03-11 16:28 GMT-05:00 Alan Williams <al...@googlemail.com>:
>
>> On 07-Mar-16 18:48, Willy Aguirre wrote:
>>
>>> Hi!
>>>
>>
>> Hello Willy
>>
>> Thank you for your interest in the Taverna GSOC issues.
>>
>> I'm Willy Aguirre from Lima Peru Actually I'm studing at UPC(
>>> http://epe.upc.edu.pe/)
>>>
>>> I don't have experience in Workflow System but I used BPMN (Bisagi) I
>>> think
>>> is new experience for me.
>>>
>>> I'm working as a java developer and also I used Play Framework 1.* it
>>> uses
>>> yaml
>>>
>>> https://pe.linkedin.com/in/willyaguirre
>>>
>>> I passed GSoC 2015 for Apache Aurora
>>> https://issues.apache.org/jira/browse/AURORA-1164
>>>
>>> I'm interesting in these ideas
>>>
>>> https://issues.apache.org/jira/browse/TAVERNA-881
>>>
>>> https://issues.apache.org/jira/browse/TAVERNA-879
>>>
>>
>> These two issues (881 and 879) are part of a group
>> https://issues.apache.org/jira/browse/TAVERNA-900 for adding support for
>> the Common Workflow Language to Taverna. For information about CWL, please
>> follow the links in the description of 900. GSOC students are only expected
>> to do one, or maybe two, of the issues - so do not panic :)
>>
>> I think 879 consists of four sub-tasks.
>>
>> (a) creating small workflows corresponding to the calling of a single
>> Taverna activity,
>>
>> (b) putting a Taverna Command Line Tool that calls a Taverna workflow
>> into a docker image
>>
>> (c) creating a CWL configuration for the docker so that the Taverna
>> workflow can be run as part of a CWL workflow.
>>
>> The fourth task
>>
>> (d) extend the CWL reader so that it recognizes CWL processes that wrap
>> Taverna workflows and re-instate the Taverna workflow (or activity if a
>> single activity)
>>
>> depends on someone doing 877 and so obviously may not be done (if no one
>> does 877) or will require co-ordination.
>>
>> For 879, I think your proposal would be relatively easy to write as the
>> issue is well-organized.
>>
>> 881 (saving Taverna workflows as CWL) is less straight-forward and you
>> would need to put more work into how you would go about achieving the task,
>> especially how to have testable parts.
>>
>> For me (and other people will have different opinions), 879 is primarily
>> a programming issue, but 881 is more "software engineering". Which one you
>> choose to do will depend on what you would like to get out of GSOC. As you
>> have already done a programming GSOC, perhaps 879 would be a good challenge.
>>
>> The members of the dev mailing list will be able to help advise on any
>> questions / suggestions you have.
>>
>> <https://issues.apache.org/jira/browse/AURORA-1164>
>>> Cheers!
>>> Willy
>>>
>>
>> Thanks again for your interest.
>>
>> <https://pe.linkedin.com/in/willyaguirre>
>>>
>>
>> Alan
>>
>>
>
>
> --
> Willy Aguirre | @willrre
> Blog: http://osgux.tumblr.com/
> Mozilla Rep: https://reps.mozilla.org/u/Willy/
> Mozilla Hispano - Willyaguirre
> <https://www.mozilla-hispano.org/documentacion/Usuario:Willyaguirre>
>
--
Willy Aguirre | @willrre
Blog: http://osgux.tumblr.com/
Mozilla Rep: https://reps.mozilla.org/u/Willy/
Mozilla Hispano - Willyaguirre
<https://www.mozilla-hispano.org/documentacion/Usuario:Willyaguirre>
Re: [GSoC 2016] Hi!!
Posted by Alan Williams <al...@googlemail.com>.
On 13-Mar-16 15:23, Willy Aguirre wrote:
> Thanks for answer! So I prefer to implement CWL
>
> https://github.com/common-workflow-language
Do you mean 881 https://issues.apache.org/jira/browse/TAVERNA-881 ?
Before the four sub-tasks, there is an essential first step -
understanding CWL and Taverna as much as possible, or at least to the
depth where you know which parts you do not know :)
Because 881 links to other issues, 877 and 879, you will need to think
about how your work will relate to them. For example, can you use a
dummy configuration until 877 is done.
When writing your proposal, do not forget to consider:
(a) how you will become involved in the developer community,
(b) how you will involve any interested users in evaluation of your work,
(c) how you will test the work
(d) the schedule, if possible with milestoones
(e) any time(s) you will not be available.
Good luck
Alan
Re: [GSoC 2016] Hi!!
Posted by Willy Aguirre <ma...@gmail.com>.
Thanks for answer! So I prefer to implement CWL
https://github.com/common-workflow-language
2016-03-11 16:28 GMT-05:00 Alan Williams <al...@googlemail.com>:
> On 07-Mar-16 18:48, Willy Aguirre wrote:
>
>> Hi!
>>
>
> Hello Willy
>
> Thank you for your interest in the Taverna GSOC issues.
>
> I'm Willy Aguirre from Lima Peru Actually I'm studing at UPC(
>> http://epe.upc.edu.pe/)
>>
>> I don't have experience in Workflow System but I used BPMN (Bisagi) I
>> think
>> is new experience for me.
>>
>> I'm working as a java developer and also I used Play Framework 1.* it uses
>> yaml
>>
>> https://pe.linkedin.com/in/willyaguirre
>>
>> I passed GSoC 2015 for Apache Aurora
>> https://issues.apache.org/jira/browse/AURORA-1164
>>
>> I'm interesting in these ideas
>>
>> https://issues.apache.org/jira/browse/TAVERNA-881
>>
>> https://issues.apache.org/jira/browse/TAVERNA-879
>>
>
> These two issues (881 and 879) are part of a group
> https://issues.apache.org/jira/browse/TAVERNA-900 for adding support for
> the Common Workflow Language to Taverna. For information about CWL, please
> follow the links in the description of 900. GSOC students are only expected
> to do one, or maybe two, of the issues - so do not panic :)
>
> I think 879 consists of four sub-tasks.
>
> (a) creating small workflows corresponding to the calling of a single
> Taverna activity,
>
> (b) putting a Taverna Command Line Tool that calls a Taverna workflow into
> a docker image
>
> (c) creating a CWL configuration for the docker so that the Taverna
> workflow can be run as part of a CWL workflow.
>
> The fourth task
>
> (d) extend the CWL reader so that it recognizes CWL processes that wrap
> Taverna workflows and re-instate the Taverna workflow (or activity if a
> single activity)
>
> depends on someone doing 877 and so obviously may not be done (if no one
> does 877) or will require co-ordination.
>
> For 879, I think your proposal would be relatively easy to write as the
> issue is well-organized.
>
> 881 (saving Taverna workflows as CWL) is less straight-forward and you
> would need to put more work into how you would go about achieving the task,
> especially how to have testable parts.
>
> For me (and other people will have different opinions), 879 is primarily a
> programming issue, but 881 is more "software engineering". Which one you
> choose to do will depend on what you would like to get out of GSOC. As you
> have already done a programming GSOC, perhaps 879 would be a good challenge.
>
> The members of the dev mailing list will be able to help advise on any
> questions / suggestions you have.
>
> <https://issues.apache.org/jira/browse/AURORA-1164>
>> Cheers!
>> Willy
>>
>
> Thanks again for your interest.
>
> <https://pe.linkedin.com/in/willyaguirre>
>>
>
> Alan
>
>
--
Willy Aguirre | @willrre
Blog: http://osgux.tumblr.com/
Mozilla Rep: https://reps.mozilla.org/u/Willy/
Mozilla Hispano - Willyaguirre
<https://www.mozilla-hispano.org/documentacion/Usuario:Willyaguirre>
Re: [GSoC 2016] Hi!!
Posted by Alan Williams <al...@googlemail.com>.
On 07-Mar-16 18:48, Willy Aguirre wrote:
> Hi!
Hello Willy
Thank you for your interest in the Taverna GSOC issues.
> I'm Willy Aguirre from Lima Peru Actually I'm studing at UPC(
> http://epe.upc.edu.pe/)
>
> I don't have experience in Workflow System but I used BPMN (Bisagi) I think
> is new experience for me.
>
> I'm working as a java developer and also I used Play Framework 1.* it uses
> yaml
>
> https://pe.linkedin.com/in/willyaguirre
>
> I passed GSoC 2015 for Apache Aurora
> https://issues.apache.org/jira/browse/AURORA-1164
>
> I'm interesting in these ideas
>
> https://issues.apache.org/jira/browse/TAVERNA-881
>
> https://issues.apache.org/jira/browse/TAVERNA-879
These two issues (881 and 879) are part of a group
https://issues.apache.org/jira/browse/TAVERNA-900 for adding support for
the Common Workflow Language to Taverna. For information about CWL,
please follow the links in the description of 900. GSOC students are
only expected to do one, or maybe two, of the issues - so do not panic :)
I think 879 consists of four sub-tasks.
(a) creating small workflows corresponding to the calling of a single
Taverna activity,
(b) putting a Taverna Command Line Tool that calls a Taverna workflow
into a docker image
(c) creating a CWL configuration for the docker so that the Taverna
workflow can be run as part of a CWL workflow.
The fourth task
(d) extend the CWL reader so that it recognizes CWL processes that wrap
Taverna workflows and re-instate the Taverna workflow (or activity if a
single activity)
depends on someone doing 877 and so obviously may not be done (if no one
does 877) or will require co-ordination.
For 879, I think your proposal would be relatively easy to write as the
issue is well-organized.
881 (saving Taverna workflows as CWL) is less straight-forward and you
would need to put more work into how you would go about achieving the
task, especially how to have testable parts.
For me (and other people will have different opinions), 879 is primarily
a programming issue, but 881 is more "software engineering". Which one
you choose to do will depend on what you would like to get out of GSOC.
As you have already done a programming GSOC, perhaps 879 would be a good
challenge.
The members of the dev mailing list will be able to help advise on any
questions / suggestions you have.
> <https://issues.apache.org/jira/browse/AURORA-1164>
> Cheers!
> Willy
Thanks again for your interest.
> <https://pe.linkedin.com/in/willyaguirre>
Alan