[jira] [Updated] (UIMA-3141) Binary CAS format 6 + type filtering fails to deserialize document annotation correctly

["Richard Eckart de Castilho (JIRA)" <de...@uima.apache.org>]

     [ https://issues.apache.org/jira/browse/UIMA-3141?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]

Richard Eckart de Castilho updated UIMA-3141:
---------------------------------------------

    Summary: Binary CAS format 6 + type filtering fails to deserialize document annotation correctly   (was: Binary CAS format 6 initializes document meta data wrong)
    
> Binary CAS format 6 + type filtering fails to deserialize document annotation correctly 
> ----------------------------------------------------------------------------------------
>
>                 Key: UIMA-3141
>                 URL: https://issues.apache.org/jira/browse/UIMA-3141
>             Project: UIMA
>          Issue Type: Bug
>          Components: Core Java Framework
>    Affects Versions: 2.4.1SDK
>            Reporter: Richard Eckart de Castilho
>            Assignee: Marshall Schor
>
> When a custom document annotation type is used, the language is not properly restored after deserializing from CAS format 6.
> Expected: deserialized CAS has language "latin"
> Actual: deserialized CAS has language "x-unspecified"
> If the line {{sourceCas.addFsToIndexes(ma);}} is commented out, the code works.
> {code}
> import static org.junit.Assert.assertEquals;
> import static org.junit.Assert.assertTrue;
> import java.io.File;
> import java.io.FileInputStream;
> import java.io.FileOutputStream;
> import java.io.InputStream;
> import java.io.OutputStream;
> import org.apache.commons.io.IOUtils;
> import org.apache.uima.cas.CAS;
> import org.apache.uima.cas.impl.Serialization;
> import org.apache.uima.cas.text.AnnotationFS;
> import org.apache.uima.resource.metadata.TypeSystemDescription;
> import org.apache.uima.resource.metadata.impl.TypeSystemDescription_impl;
> import org.apache.uima.util.CasCreationUtils;
> import org.junit.Rule;
> import org.junit.Test;
> import org.junit.rules.TemporaryFolder;
> public class MinimalTest
> {
>     @Rule
>     public TemporaryFolder testFolder = new TemporaryFolder();
>     @Test
>     public void test()
>         throws Exception
>     {
>         TypeSystemDescription sourceTsd = new TypeSystemDescription_impl();
>         sourceTsd.addType("DocMeta", "", CAS.TYPE_NAME_DOCUMENT_ANNOTATION);
>         TypeSystemDescription targetTsd = new TypeSystemDescription_impl();
>         CAS sourceCas = CasCreationUtils.createCas(sourceTsd, null, null);
>         AnnotationFS ma = sourceCas.createAnnotation(sourceCas.getTypeSystem().getType("DocMeta"),
>                 0, 0);
>         sourceCas.addFsToIndexes(ma);
>         sourceCas.setDocumentLanguage("latin");
>         sourceCas.setDocumentText("test");
>         File file = testFolder.newFile("test.bin");
>         OutputStream os = new FileOutputStream(file);
>         Serialization.serializeWithCompression(sourceCas, os, sourceCas.getTypeSystem());
>         IOUtils.closeQuietly(os);
>         assertTrue(new File(testFolder.getRoot(), "test.bin").exists());
>         CAS targetCas = CasCreationUtils.createCas(targetTsd, null, null);
>         InputStream is = new FileInputStream(file);
>         Serialization.deserializeCAS(targetCas, is, sourceCas.getTypeSystem(), null);
>         IOUtils.closeQuietly(is);
>         assertEquals("latin", targetCas.getDocumentLanguage());
>         assertEquals("test", targetCas.getDocumentText());
>     }
> }
> {code}

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