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Posted to commits@airavata.apache.org by er...@apache.org on 2017/02/13 15:54:36 UTC
airavata-docs git commit: Adding a tutorial page for easy admin
configurations
Repository: airavata-docs
Updated Branches:
refs/heads/master d539a423d -> a31d32a26
Adding a tutorial page for easy admin configurations
Project: http://git-wip-us.apache.org/repos/asf/airavata-docs/repo
Commit: http://git-wip-us.apache.org/repos/asf/airavata-docs/commit/a31d32a2
Tree: http://git-wip-us.apache.org/repos/asf/airavata-docs/tree/a31d32a2
Diff: http://git-wip-us.apache.org/repos/asf/airavata-docs/diff/a31d32a2
Branch: refs/heads/master
Commit: a31d32a264d48ff6713d9e5e2793b37d79d64744
Parents: d539a42
Author: Eroma Abeysinghe <er...@gmail.com>
Authored: Mon Feb 13 10:54:32 2017 -0500
Committer: Eroma Abeysinghe <er...@gmail.com>
Committed: Mon Feb 13 10:54:32 2017 -0500
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Admin-Tutorials.md | 87 +++++++++++++++++++++++++++++++++++++++++++++++++
1 file changed, 87 insertions(+)
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http://git-wip-us.apache.org/repos/asf/airavata-docs/blob/a31d32a2/Admin-Tutorials.md
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diff --git a/Admin-Tutorials.md b/Admin-Tutorials.md
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+## Admin Dashboard Configurations
+
+This page is dedicated to Gateway Admins!
+
+### Prior to starting your configurations make sure;
+1. You have admin access to the PGA portal, Admin Dashboard
+2. Storage resource ID added to the pga_config.php </br>
+3. Credentials generated, updated in PGA and added to authorized_keys file in compute resources
+4. Credentials generated, updated in PGA and added to authorized_keys file in storage resources
+
+NOTE: If you are using a hosted gateway the 2 and 4 would be taken cared by the SciGaP team.
+
+### Select Your Quick Start Tutorials
+1. <a href="#LocalJob">Running Echo on Local Machine</a></br>
+2. <a href="#GaussianJob">Gaussian Job Submission to Comet (XSEDE resource)</a></br>
+3. <a href="#PrePostCommands">Add Environment Variables, Pre and Post Job Commands for an Application</a></br>
+4. <a href="#SampleApp">Samples Application Configurations</a></br>
+5. <a href= "#QOS&Reservation">Add Gateway QOS and Reservation for a Cluster</a></br>
+6. <a href= "#Preference">Add Storage Resource Preferences</a></br>
+<br>
+</br>
+
+#####<h5 id="LocalJob">Running Echo on Local Machine</h5>
+Quickest way to confirm Airavata and PGA setup. This will tell you what you need to do to Echo a simple 'Hello World' in your local machine
+
+1. Create new application module: Echo
+ - Navigate to Admin Dashboard → App Catalog → Apllication Module
+ - Click Create a new Application Module
+ - Enter Application Module Name: Echo
+ - Enter Application Module Version: Echo 1.0 (Not mandatory)
+ - Enter Description: Echo application for testing
+ - Create
+ - This create the Echo module </br>
+ </br></br>
+2. Create the application interface: Echo
+ - Navigate to Admin Dashboard → App Catalog → Application Interface
+ - Click 'Create new Application Interface'
+ - Add Application Name: Echo
+ - Add Application Description: Echo Interface for testing
+ - Select Application Module: Echo
+ - Set 'Enable Archiving Working Directory' to False (Why? - This is set to true if you want to bring back all the files in working directory back to PGA)
+ - Set 'Enable Optional File Inputs' to False (Why? - Set to false because there won't be any additional optional inputs for Echo)
+ - Provide application inputs
+ - Click Add Application Input
+ - Name: Input-to-Echo
+ - Value: Echo Test 1......2......3....... (This value can be overridden at experiment creation)
+ - Type: STRING
+ - Application Arguments:
+ - Standard Input: False (Why? - Futuristic property and not in real use at the moment)
+ - User Friendly Description: Enter STRING input for Echo (Not mandatory)
+ - Input Order: 1
+ - Data is Staged: True
+ - Is the Input Required: True
+ - Required in Commandline: True
+ - Meta Data:
+ - Provide application outputs
+ - Click Add Application Output
+ - Name: Echo-Standard-Out
+ - Value:
+ - Type: STDOUT
+ - Application Argument:
+ - Data Movement: False
+ - Is the Output required?: True
+ - Required on command line?: True
+ - Location:
+ - Search Query:</br>
+  </br></br>
+3. Create the application deployment: Echo on Local Machine
+ - Navigate to Admin Dashboard → App Catalog → Application Deployment
+ - Click 'Create new Application Deployment'
+ - Application Module: Echo
+ - Application Compute Host: Local (Local machine has to be added as a compute resource prior to this step)
+ - Application Executable Path: /home/airavata/ECHO/echo_wrapper.sh (Local to where you have airavata installed)
+ - Application Parallelism Type: SERIAL
+4. Echo_wrapper.sh contains;
+<pre><code>
+ #!/bin/bash
+ #sleep 4
+ echo "Echoed_Output=$1" >> $2 2>> $3
+</code></pre>
+
+#####<h5 id="GaussianJob">Gaussian Job Submission to Comet (XSEDE resource)</h5>
+This is a tutorial to configuring and running an application on XSEDE resource through PGA portal.
+Work-in-Progress
+
+Refer <a href="/Gateway-Configurations/#AppCatalog" target="_blank">Application Configuration</a> for more details.
+