You are viewing a plain text version of this content. The canonical link for it is here.
Posted to yarn-issues@hadoop.apache.org by "Haibo Chen (JIRA)" <ji...@apache.org> on 2018/05/08 22:10:00 UTC
[jira] [Updated] (YARN-8090) Race conditions in FadvisedChunkedFile
[ https://issues.apache.org/jira/browse/YARN-8090?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]
Haibo Chen updated YARN-8090:
-----------------------------
Description:
When a file is closed mutple times by multiple threads, all but the first close will generate a WARNING message.
{code:java}
11:04:33.605 AM WARN FadvisedChunkedFile
Failed to manage OS cache for /var/run/100/yarn/nm/usercache/systest/appcache/application_1521665017379_0062/output/attempt_1521665017379_0062_m_012797_0/file.out
EBADF: Bad file descriptor
at org.apache.hadoop.io.nativeio.NativeIO$POSIX.posix_fadvise(Native Method)
at org.apache.hadoop.io.nativeio.NativeIO$POSIX.posixFadviseIfPossible(NativeIO.java:267)
at org.apache.hadoop.io.nativeio.NativeIO$POSIX$CacheManipulator.posixFadviseIfPossible(NativeIO.java:146)
at org.apache.hadoop.mapred.FadvisedChunkedFile.close(FadvisedChunkedFile.java:76)
at org.jboss.netty.handler.stream.ChunkedWriteHandler.closeInput(ChunkedWriteHandler.java:303)
at org.jboss.netty.handler.stream.ChunkedWriteHandler.discard(ChunkedWriteHandler.java:163)
at org.jboss.netty.handler.stream.ChunkedWriteHandler.flush(ChunkedWriteHandler.java:192)
at org.jboss.netty.handler.stream.ChunkedWriteHandler.handleUpstream(ChunkedWriteHandler.java:137)
at org.jboss.netty.channel.DefaultChannelPipeline.sendUpstream(DefaultChannelPipeline.java:564)
at org.jboss.netty.channel.DefaultChannelPipeline$DefaultChannelHandlerContext.sendUpstream(DefaultChannelPipeline.java:791)
at org.jboss.netty.channel.SimpleChannelUpstreamHandler.channelClosed(SimpleChannelUpstreamHandler.java:225)
at org.jboss.netty.channel.SimpleChannelUpstreamHandler.handleUpstream(SimpleChannelUpstreamHandler.java:88)
at org.jboss.netty.channel.DefaultChannelPipeline.sendUpstream(DefaultChannelPipeline.java:564)
at org.jboss.netty.channel.DefaultChannelPipeline$DefaultChannelHandlerContext.sendUpstream(DefaultChannelPipeline.java:791)
at org.jboss.netty.handler.codec.replay.ReplayingDecoder.cleanup(ReplayingDecoder.java:570)
at org.jboss.netty.handler.codec.frame.FrameDecoder.channelClosed(FrameDecoder.java:371)
at org.jboss.netty.channel.SimpleChannelUpstreamHandler.handleUpstream(SimpleChannelUpstreamHandler.java:88)
at org.jboss.netty.channel.DefaultChannelPipeline.sendUpstream(DefaultChannelPipeline.java:564)
at org.jboss.netty.channel.DefaultChannelPipeline$DefaultChannelHandlerContext.sendUpstream(DefaultChannelPipeline.java:791)
at org.jboss.netty.handler.codec.frame.FrameDecoder.cleanup(FrameDecoder.java:493)
at org.jboss.netty.handler.codec.frame.FrameDecoder.channelClosed(FrameDecoder.java:371)
at org.jboss.netty.handler.ssl.SslHandler.channelClosed(SslHandler.java:1667)
at org.jboss.netty.channel.SimpleChannelUpstreamHandler.handleUpstream(SimpleChannelUpstreamHandler.java:88)
at org.jboss.netty.channel.DefaultChannelPipeline.sendUpstream(DefaultChannelPipeline.java:564)
at org.jboss.netty.channel.DefaultChannelPipeline.sendUpstream(DefaultChannelPipeline.java:559)
at org.jboss.netty.channel.Channels.fireChannelClosed(Channels.java:468)
at org.jboss.netty.channel.socket.nio.AbstractNioWorker.close(AbstractNioWorker.java:375)
at org.jboss.netty.channel.socket.nio.NioWorker.read(NioWorker.java:93)
at org.jboss.netty.channel.socket.nio.AbstractNioWorker.process(AbstractNioWorker.java:108)
at org.jboss.netty.channel.socket.nio.AbstractNioSelector.run(AbstractNioSelector.java:337)
at org.jboss.netty.channel.socket.nio.AbstractNioWorker.run(AbstractNioWorker.java:89)
at org.jboss.netty.channel.socket.nio.NioWorker.run(NioWorker.java:178)
at org.jboss.netty.util.ThreadRenamingRunnable.run(ThreadRenamingRunnable.java:108)
at org.jboss.netty.util.internal.DeadLockProofWorker$1.run(DeadLockProofWorker.java:42)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748){code}
was:
{code:java}
11:04:33.605 AM WARN FadvisedChunkedFile
Failed to manage OS cache for /var/run/100/yarn/nm/usercache/systest/appcache/application_1521665017379_0062/output/attempt_1521665017379_0062_m_012797_0/file.out
EBADF: Bad file descriptor
at org.apache.hadoop.io.nativeio.NativeIO$POSIX.posix_fadvise(Native Method)
at org.apache.hadoop.io.nativeio.NativeIO$POSIX.posixFadviseIfPossible(NativeIO.java:267)
at org.apache.hadoop.io.nativeio.NativeIO$POSIX$CacheManipulator.posixFadviseIfPossible(NativeIO.java:146)
at org.apache.hadoop.mapred.FadvisedChunkedFile.close(FadvisedChunkedFile.java:76)
at org.jboss.netty.handler.stream.ChunkedWriteHandler.closeInput(ChunkedWriteHandler.java:303)
at org.jboss.netty.handler.stream.ChunkedWriteHandler.discard(ChunkedWriteHandler.java:163)
at org.jboss.netty.handler.stream.ChunkedWriteHandler.flush(ChunkedWriteHandler.java:192)
at org.jboss.netty.handler.stream.ChunkedWriteHandler.handleUpstream(ChunkedWriteHandler.java:137)
at org.jboss.netty.channel.DefaultChannelPipeline.sendUpstream(DefaultChannelPipeline.java:564)
at org.jboss.netty.channel.DefaultChannelPipeline$DefaultChannelHandlerContext.sendUpstream(DefaultChannelPipeline.java:791)
at org.jboss.netty.channel.SimpleChannelUpstreamHandler.channelClosed(SimpleChannelUpstreamHandler.java:225)
at org.jboss.netty.channel.SimpleChannelUpstreamHandler.handleUpstream(SimpleChannelUpstreamHandler.java:88)
at org.jboss.netty.channel.DefaultChannelPipeline.sendUpstream(DefaultChannelPipeline.java:564)
at org.jboss.netty.channel.DefaultChannelPipeline$DefaultChannelHandlerContext.sendUpstream(DefaultChannelPipeline.java:791)
at org.jboss.netty.handler.codec.replay.ReplayingDecoder.cleanup(ReplayingDecoder.java:570)
at org.jboss.netty.handler.codec.frame.FrameDecoder.channelClosed(FrameDecoder.java:371)
at org.jboss.netty.channel.SimpleChannelUpstreamHandler.handleUpstream(SimpleChannelUpstreamHandler.java:88)
at org.jboss.netty.channel.DefaultChannelPipeline.sendUpstream(DefaultChannelPipeline.java:564)
at org.jboss.netty.channel.DefaultChannelPipeline$DefaultChannelHandlerContext.sendUpstream(DefaultChannelPipeline.java:791)
at org.jboss.netty.handler.codec.frame.FrameDecoder.cleanup(FrameDecoder.java:493)
at org.jboss.netty.handler.codec.frame.FrameDecoder.channelClosed(FrameDecoder.java:371)
at org.jboss.netty.handler.ssl.SslHandler.channelClosed(SslHandler.java:1667)
at org.jboss.netty.channel.SimpleChannelUpstreamHandler.handleUpstream(SimpleChannelUpstreamHandler.java:88)
at org.jboss.netty.channel.DefaultChannelPipeline.sendUpstream(DefaultChannelPipeline.java:564)
at org.jboss.netty.channel.DefaultChannelPipeline.sendUpstream(DefaultChannelPipeline.java:559)
at org.jboss.netty.channel.Channels.fireChannelClosed(Channels.java:468)
at org.jboss.netty.channel.socket.nio.AbstractNioWorker.close(AbstractNioWorker.java:375)
at org.jboss.netty.channel.socket.nio.NioWorker.read(NioWorker.java:93)
at org.jboss.netty.channel.socket.nio.AbstractNioWorker.process(AbstractNioWorker.java:108)
at org.jboss.netty.channel.socket.nio.AbstractNioSelector.run(AbstractNioSelector.java:337)
at org.jboss.netty.channel.socket.nio.AbstractNioWorker.run(AbstractNioWorker.java:89)
at org.jboss.netty.channel.socket.nio.NioWorker.run(NioWorker.java:178)
at org.jboss.netty.util.ThreadRenamingRunnable.run(ThreadRenamingRunnable.java:108)
at org.jboss.netty.util.internal.DeadLockProofWorker$1.run(DeadLockProofWorker.java:42)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748){code}
> Race conditions in FadvisedChunkedFile
> --------------------------------------
>
> Key: YARN-8090
> URL: https://issues.apache.org/jira/browse/YARN-8090
> Project: Hadoop YARN
> Issue Type: Bug
> Affects Versions: 3.1.0
> Reporter: Miklos Szegedi
> Assignee: Miklos Szegedi
> Priority: Major
> Attachments: YARN-8090.000.patch, YARN-8090.001.patch
>
>
> When a file is closed mutple times by multiple threads, all but the first close will generate a WARNING message.
> {code:java}
> 11:04:33.605 AM WARN FadvisedChunkedFile
> Failed to manage OS cache for /var/run/100/yarn/nm/usercache/systest/appcache/application_1521665017379_0062/output/attempt_1521665017379_0062_m_012797_0/file.out
> EBADF: Bad file descriptor
> at org.apache.hadoop.io.nativeio.NativeIO$POSIX.posix_fadvise(Native Method)
> at org.apache.hadoop.io.nativeio.NativeIO$POSIX.posixFadviseIfPossible(NativeIO.java:267)
> at org.apache.hadoop.io.nativeio.NativeIO$POSIX$CacheManipulator.posixFadviseIfPossible(NativeIO.java:146)
> at org.apache.hadoop.mapred.FadvisedChunkedFile.close(FadvisedChunkedFile.java:76)
> at org.jboss.netty.handler.stream.ChunkedWriteHandler.closeInput(ChunkedWriteHandler.java:303)
> at org.jboss.netty.handler.stream.ChunkedWriteHandler.discard(ChunkedWriteHandler.java:163)
> at org.jboss.netty.handler.stream.ChunkedWriteHandler.flush(ChunkedWriteHandler.java:192)
> at org.jboss.netty.handler.stream.ChunkedWriteHandler.handleUpstream(ChunkedWriteHandler.java:137)
> at org.jboss.netty.channel.DefaultChannelPipeline.sendUpstream(DefaultChannelPipeline.java:564)
> at org.jboss.netty.channel.DefaultChannelPipeline$DefaultChannelHandlerContext.sendUpstream(DefaultChannelPipeline.java:791)
> at org.jboss.netty.channel.SimpleChannelUpstreamHandler.channelClosed(SimpleChannelUpstreamHandler.java:225)
> at org.jboss.netty.channel.SimpleChannelUpstreamHandler.handleUpstream(SimpleChannelUpstreamHandler.java:88)
> at org.jboss.netty.channel.DefaultChannelPipeline.sendUpstream(DefaultChannelPipeline.java:564)
> at org.jboss.netty.channel.DefaultChannelPipeline$DefaultChannelHandlerContext.sendUpstream(DefaultChannelPipeline.java:791)
> at org.jboss.netty.handler.codec.replay.ReplayingDecoder.cleanup(ReplayingDecoder.java:570)
> at org.jboss.netty.handler.codec.frame.FrameDecoder.channelClosed(FrameDecoder.java:371)
> at org.jboss.netty.channel.SimpleChannelUpstreamHandler.handleUpstream(SimpleChannelUpstreamHandler.java:88)
> at org.jboss.netty.channel.DefaultChannelPipeline.sendUpstream(DefaultChannelPipeline.java:564)
> at org.jboss.netty.channel.DefaultChannelPipeline$DefaultChannelHandlerContext.sendUpstream(DefaultChannelPipeline.java:791)
> at org.jboss.netty.handler.codec.frame.FrameDecoder.cleanup(FrameDecoder.java:493)
> at org.jboss.netty.handler.codec.frame.FrameDecoder.channelClosed(FrameDecoder.java:371)
> at org.jboss.netty.handler.ssl.SslHandler.channelClosed(SslHandler.java:1667)
> at org.jboss.netty.channel.SimpleChannelUpstreamHandler.handleUpstream(SimpleChannelUpstreamHandler.java:88)
> at org.jboss.netty.channel.DefaultChannelPipeline.sendUpstream(DefaultChannelPipeline.java:564)
> at org.jboss.netty.channel.DefaultChannelPipeline.sendUpstream(DefaultChannelPipeline.java:559)
> at org.jboss.netty.channel.Channels.fireChannelClosed(Channels.java:468)
> at org.jboss.netty.channel.socket.nio.AbstractNioWorker.close(AbstractNioWorker.java:375)
> at org.jboss.netty.channel.socket.nio.NioWorker.read(NioWorker.java:93)
> at org.jboss.netty.channel.socket.nio.AbstractNioWorker.process(AbstractNioWorker.java:108)
> at org.jboss.netty.channel.socket.nio.AbstractNioSelector.run(AbstractNioSelector.java:337)
> at org.jboss.netty.channel.socket.nio.AbstractNioWorker.run(AbstractNioWorker.java:89)
> at org.jboss.netty.channel.socket.nio.NioWorker.run(NioWorker.java:178)
> at org.jboss.netty.util.ThreadRenamingRunnable.run(ThreadRenamingRunnable.java:108)
> at org.jboss.netty.util.internal.DeadLockProofWorker$1.run(DeadLockProofWorker.java:42)
> at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
> at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
> at java.lang.Thread.run(Thread.java:748){code}
--
This message was sent by Atlassian JIRA
(v7.6.3#76005)
---------------------------------------------------------------------
To unsubscribe, e-mail: yarn-issues-unsubscribe@hadoop.apache.org
For additional commands, e-mail: yarn-issues-help@hadoop.apache.org