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Posted to commits@taverna.apache.org by bu...@apache.org on 2015/01/29 12:45:55 UTC
svn commit: r938183 - in /websites/staging/taverna/trunk: cgi-bin/ content/
content/introduction/taverna-features
content/introduction/taverna-features.html
Author: buildbot
Date: Thu Jan 29 11:45:55 2015
New Revision: 938183
Log:
Staging update by buildbot for taverna
Added:
websites/staging/taverna/trunk/content/introduction/taverna-features.html
Removed:
websites/staging/taverna/trunk/content/introduction/taverna-features
Modified:
websites/staging/taverna/trunk/cgi-bin/ (props changed)
websites/staging/taverna/trunk/content/ (props changed)
Propchange: websites/staging/taverna/trunk/cgi-bin/
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==============================================================================
--- websites/staging/taverna/trunk/content/introduction/taverna-features.html (added)
+++ websites/staging/taverna/trunk/content/introduction/taverna-features.html Thu Jan 29 11:45:55 2015
@@ -0,0 +1,268 @@
+<!DOCTYPE html>
+<html lang="en">
+ <head>
+ <meta charset="utf-8">
+ <meta http-equiv="X-UA-Compatible" content="IE=edge">
+ <meta name="viewport" content="width=device-width, initial-scale=1">
+ <title>Apache Taverna - </title>
+
+ <meta http-equiv="Content-Type" content="text/html;charset=UTF-8">
+ <meta property="og:image" content="/img/taverna-logo-145x134.png" />
+
+ <link rel="shortcut icon" href="/favicon.ico">
+ <link rel="icon" type="image/png" sizes="145x134" href="/img/taverna-logo-145x134.png">
+ <link rel="apple-touch-icon" sizes="145x134" href="/img/taverna-logo-145x134.png">
+
+ <link rel="stylesheet" href="/lib/bootstrap/css/bootstrap.min.css">
+ <link rel="stylesheet" href="/lib/bootstrap/css/bootstrap-theme.min.css">
+ <link rel="stylesheet" href="/css/sticky-footer-navbar.css">
+ <link rel="stylesheet" href="/css/taverna.css">
+
+
+
+
+
+
+ <!-- JSON-LD markup for Google Structured Data -->
+
+ <!-- generic JSON-LD for this page -->
+ <script type="application/ld+json">
+ {
+ "@context" : "http://schema.org",
+ "@type" : ["CreativeWork"],
+ "@id": "",
+ "name" : "",
+ "publisher" : {
+ "@type" : "Organization",
+ "url" : "http://www.apache.org/",
+ "name" : "The Apache Software Foundation (ASF)"
+ },
+ "license": {
+ "@type": "CreativeWork",
+ "@id": "http://www.apache.org/licenses/LICENSE-2.0",
+ "url": "http://www.apache.org/licenses/LICENSE-2.0",
+ "name": "Apache License, Version 2.0"
+ }
+ }
+</script>
+
+ </head>
+
+ <body>
+
+ <!-- Static navbar -->
+ <nav class="navbar navbar-default" role="navigation">
+ <div class="container">
+ <div class="navbar-header">
+ <button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar" aria-expanded="false" aria-controls="navbar">
+ <span class="sr-only">Toggle navigation</span>
+ <span class="icon-bar"></span>
+ <span class="icon-bar"></span>
+ <span class="icon-bar"></span>
+ </button>
+ <a class="navbar-brand" href="/"><img src="/img/taverna-logo-145x134.png" alt="">Apache Taverna</a>
+
+ </div>
+ <div id="navbar" class="navbar-collapse collapse">
+ <ul class="nav navbar-nav">
+ <li><a href="/about/">About</a></li>
+ <li class="dropdown">
+ <a href="/download/" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">Download<span class="caret"></span></a>
+ <ul class="dropdown-menu" role="menu">
+ <li><a href="/download/">Apache Taverna 3.x</a></li>
+ <li><a href="/download/pre-apache.html">Taverna 2.x (Pre-Apache)</a></li>
+ </ul>
+ </li>
+ <li><a href="/doc/">Documentation</a></li>
+ <li><a href="/code/">Code</a></li>
+ <li><a href="/contact/">Contact</a></li>
+ </ul>
+
+ <form >
+
+
+ <!--<input type="submit" id="submit" value="Search">-->
+ </form>
+
+ <form class="navbar-form navbar-right" role="search"
+ name="search" id="search" action="http://www.google.com/search" method="get">
+ <input value="taverna.incubator.apache.org" name="sitesearch" type="hidden"/>
+ <div class="form-group input-group">
+ <input type="text" name="q" id="query" placeholder="Search" class="form-control">
+ <span class="input-group-btn">
+ <button type="submit" class="btn btn-default">Search</button>
+ </span>
+ </div>
+ </form>
+
+ <ul class="nav navbar-nav navbar-right">
+ <li class="dropdown">
+ <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">ASF<span class="caret"></span></a>
+ <ul class="dropdown-menu" role="menu">
+ <li><a href="http://www.apache.org/">Apache Software Foundation</a></li>
+ <li><a href="http://www.apache.org/foundation/how-it-works.html">How it works</a></li>
+ <li><a href="http://www.apache.org/foundation/thanks.html">Thanks</a></li>
+ <li><a href="http://www.apache.org/foundation/sponsorship.html">Become a Sponsor</a></li>
+ <li><a href="http://incubator.apache.org/projects/taverna.html">Taverna Incubation Status</a></li>
+ </ul>
+ </li>
+ </ul>
+ </div><!--/.nav-collapse -->
+ </div><!--/.container-fluid -->
+ </nav>
+
+
+ <div id="page" class="container">
+ <h1></h1>
+ <div class="alert alert-info" role="alert"><p><span class="glyphicon glyphicon-info-sign" aria-hidden="true"></span>
+
+Taverna is transitioning to the Apache Incubator.
+This webpage reflects material not yet released under Apache Incubator.
+Instead it shows <a class="alert-link" href="http://www.taverna.org.uk/">taverna2</a> material that is expected to become part of the Apache Incubator project in the future.
+</div>
+
+
+ <div id="content"><p>The Taverna suite of tools are bringing together a range of features to make it easier for users to find, design and execute complex workflows and share them with other people.</p>
+<p>Freely available</p>
+<div class="codehilite"><pre><span class="n">Java</span><span class="p">,</span> <span class="n">open</span> <span class="n">source</span><span class="p">,</span> <span class="n">LPGL</span> <span class="n">licensed</span> <span class="p">(</span><span class="n">GPL</span> <span class="k">for</span> <span class="n">Astronomy</span> <span class="n">versions</span><span class="p">)</span>
+</pre></div>
+
+
+<p>Suite of tools to design, edit and execute workflows</p>
+<div class="codehilite"><pre><span class="n">Workflow</span> <span class="n">design</span> <span class="n">and</span> <span class="n">execution</span> <span class="n">in</span> <span class="n">Taverna</span> <span class="n">Workbench</span>
+<span class="n">Command</span> <span class="n">line</span> <span class="n">execution</span> <span class="n">of</span> <span class="n">workflows</span>
+<span class="n">Remote</span> <span class="n">execution</span> <span class="n">of</span> <span class="n">workflows</span> <span class="n">on</span> <span class="n">a</span> <span class="n">Taverna</span> <span class="n">server</span>
+<span class="n">Invoke</span> <span class="n">workflows</span> <span class="n">from</span> <span class="n">the</span> <span class="n">Internet</span>
+</pre></div>
+
+
+<p>Wide range of services and extensible architecture</p>
+<div class="codehilite"><pre><span class="n">Service</span> <span class="n">discovery</span>
+<span class="n">Various</span> <span class="n">service</span> <span class="n">types</span> <span class="n">available</span><span class="p">:</span> <span class="n">WSDL</span><span class="o">-</span><span class="n">style</span> <span class="n">and</span> <span class="n">RESTful</span> <span class="n">Web</span> <span class="n">services</span><span class="p">,</span> <span class="n">BioMart</span><span class="p">,</span> <span class="n">BioMoby</span><span class="p">,</span> <span class="n">SoapLab</span><span class="p">,</span> <span class="n">R</span><span class="p">,</span> <span class="n">Beanshell</span><span class="p">,</span> <span class="n">Excel</span> <span class="n">and</span> <span class="n">csv</span> <span class="n">spreadsheets</span>
+<span class="n">Service</span> <span class="n">creation</span> <span class="k">for</span> <span class="n">external</span> <span class="n">tools</span> <span class="n">or</span> <span class="n">Java</span> <span class="n">libraries</span>
+<span class="n">Calling</span> <span class="n">tools</span><span class="o">/</span><span class="n">scripts</span> <span class="n">on</span> <span class="n">a</span> <span class="n">local</span> <span class="n">machine</span> <span class="n">or</span> <span class="n">remote</span> <span class="n">machines</span> <span class="p">(</span><span class="n">via</span> <span class="n">ssh</span><span class="p">)</span>
+<span class="n">Extensible</span> <span class="n">service</span> <span class="n">plug</span><span class="o">-</span><span class="n">in</span> <span class="n">architecture</span> <span class="k">for</span> <span class="n">adding</span> <span class="n">new</span> <span class="n">service</span> <span class="n">types</span>
+<span class="n">Fully</span> <span class="n">integrated</span> <span class="n">support</span> <span class="k">for</span> <span class="n">browsing</span> <span class="n">curated</span> <span class="n">service</span> <span class="n">catalogues</span><span class="p">,</span> <span class="n">such</span> <span class="n">as</span> <span class="n">the</span> <span class="n">BioCatalogue</span><span class="p">,</span> <span class="k">for</span> <span class="n">Web</span> <span class="n">services</span> <span class="p">(</span><span class="n">WSDL</span><span class="o">/</span><span class="n">SOAP</span> <span class="n">and</span> <span class="n">REST</span><span class="p">)</span>
+<span class="n">Interaction</span> <span class="n">with</span> <span class="n">a</span> <span class="n">running</span> <span class="n">workflow</span> <span class="n">within</span> <span class="n">a</span> <span class="n">web</span> <span class="n">browser</span>
+<span class="n">Ability</span> <span class="n">to</span> <span class="n">define</span> <span class="n">and</span> <span class="n">share</span> <span class="n">semantically</span> <span class="n">annotated</span> <span class="n">components</span><span class="p">,</span> <span class="n">and</span> <span class="n">have</span> <span class="n">them</span> <span class="n">used</span> <span class="n">as</span> <span class="n">services</span> <span class="n">in</span> <span class="n">workflows</span>
+</pre></div>
+
+
+<p>Secure</p>
+<div class="codehilite"><pre><span class="n">Support</span> <span class="k">for</span> <span class="n">secure</span> <span class="n">services</span> <span class="p">(</span><span class="n">HTTP</span> <span class="n">authentication</span><span class="p">,</span> <span class="n">WS</span><span class="o">-</span><span class="n">Security</span><span class="p">,</span> <span class="n">X</span><span class="p">.</span>509 <span class="n">client</span> <span class="n">authentication</span><span class="p">)</span>
+<span class="n">Secure</span> <span class="n">management</span> <span class="n">of</span> <span class="n">users</span>â <span class="n">credentials</span>
+</pre></div>
+
+
+<p>Versatile Workbench</p>
+<div class="codehilite"><pre><span class="n">Tabs</span> <span class="k">for</span> <span class="n">finding</span><span class="p">,</span> <span class="n">designing</span> <span class="n">and</span> <span class="n">executing</span> <span class="n">workflows</span>
+<span class="n">Fully</span> <span class="n">graphical</span> <span class="n">workflow</span> <span class="n">design</span>
+<span class="n">Drag</span> <span class="n">and</span> <span class="n">drop</span> <span class="n">workflow</span> <span class="n">components</span>
+<span class="n">Comprehensive</span> <span class="n">undo</span><span class="o">/</span><span class="n">redo</span>
+<span class="n">Built</span><span class="o">-</span><span class="n">in</span> <span class="n">help</span> <span class="n">facility</span>
+<span class="n">Annotations</span> <span class="k">for</span> <span class="n">describing</span> <span class="n">workflows</span><span class="p">,</span> <span class="n">services</span><span class="p">,</span> <span class="n">inputs</span><span class="p">,</span> <span class="n">outputs</span>
+<span class="n">Workflow</span> <span class="n">validation</span> <span class="n">and</span> <span class="n">debugging</span>
+</pre></div>
+
+
+<p>Create your own or start from existing workflows</p>
+<div class="codehilite"><pre><span class="n">Easy</span> <span class="n">design</span> <span class="n">of</span> <span class="n">new</span> <span class="n">workflows</span>
+<span class="n">Load</span> <span class="n">existing</span> <span class="n">workflows</span> <span class="p">(</span><span class="n">from</span> <span class="n">a</span> <span class="n">disk</span><span class="p">,</span> <span class="n">myExperiment</span> <span class="n">or</span> <span class="n">a</span> <span class="n">URL</span><span class="p">)</span>
+<span class="n">View</span> <span class="n">workflow</span> <span class="n">layout</span> <span class="n">and</span> <span class="n">logic</span>
+<span class="n">Modify</span> <span class="n">existing</span> <span class="n">workflows</span>
+<span class="n">Load</span> <span class="n">workflows</span> <span class="n">in</span> <span class="n">off</span><span class="o">-</span><span class="n">line</span> <span class="n">mode</span> <span class="p">(</span><span class="n">when</span> <span class="n">disconnected</span> <span class="n">from</span> <span class="n">the</span> <span class="n">Internet</span><span class="p">)</span>
+<span class="n">Nested</span> <span class="n">workflows</span> <span class="p">(</span><span class="n">sub</span> <span class="n">workflows</span><span class="p">)</span>
+<span class="n">Workflow</span> <span class="n">validation</span> <span class="n">during</span> <span class="n">design</span> <span class="n">time</span> <span class="k">for</span> <span class="n">debugging</span> <span class="k">while</span> <span class="n">composing</span> <span class="n">a</span> <span class="n">workflow</span>
+<span class="n">Built</span><span class="o">-</span><span class="n">in</span> <span class="n">detection</span> <span class="n">when</span> <span class="n">a</span> <span class="n">service</span>â<span class="n">s</span> <span class="n">interface</span> <span class="n">changes</span> <span class="n">or</span> <span class="n">a</span> <span class="n">service</span> <span class="n">go</span> <span class="n">off</span><span class="o">-</span><span class="n">line</span> <span class="n">during</span> <span class="n">design</span> <span class="n">time</span>
+</pre></div>
+
+
+<p>Find workflows created by others and share yours</p>
+<div class="codehilite"><pre><span class="n">Full</span> <span class="n">myExperiment</span> <span class="n">search</span> <span class="n">options</span> <span class="k">for</span> <span class="n">browsing</span> <span class="n">workflows</span>
+<span class="n">Publish</span> <span class="n">workflows</span> <span class="n">on</span> <span class="n">myExperiment</span> <span class="k">for</span> <span class="n">use</span> <span class="n">by</span> <span class="n">others</span>
+</pre></div>
+
+
+<p>Execute and debug your workflows</p>
+<div class="codehilite"><pre><span class="n">Execute</span> <span class="n">workflows</span>
+<span class="n">Remember</span> <span class="n">previously</span> <span class="n">used</span> <span class="n">workflow</span> <span class="n">inputs</span>
+<span class="n">Save</span> <span class="n">workflow</span> <span class="n">input</span> <span class="n">values</span> <span class="n">used</span> <span class="n">to</span> <span class="n">a</span> <span class="n">file</span>
+<span class="n">Load</span> <span class="n">workflow</span> <span class="n">input</span> <span class="n">values</span> <span class="n">from</span> <span class="n">a</span> <span class="n">file</span>
+<span class="n">Pipelining</span> <span class="n">and</span> <span class="n">streaming</span> <span class="n">of</span> <span class="n">data</span>
+<span class="n">Implicit</span> <span class="n">iteration</span> <span class="n">of</span> <span class="n">service</span> <span class="n">calls</span>
+<span class="n">Conditional</span> <span class="n">and</span> <span class="n">repeated</span> <span class="n">calling</span> <span class="n">of</span> <span class="n">services</span>
+<span class="n">Customizable</span> <span class="n">looping</span> <span class="n">over</span> <span class="n">a</span> <span class="n">service</span>
+<span class="n">Failover</span> <span class="n">and</span> <span class="n">retry</span> <span class="n">of</span> <span class="n">service</span> <span class="n">calling</span>
+<span class="n">Parallel</span> <span class="n">execution</span> <span class="n">and</span> <span class="n">configurable</span> <span class="n">number</span> <span class="n">of</span> <span class="n">concurrent</span> <span class="n">threads</span>
+<span class="n">Improved</span> <span class="n">error</span> <span class="n">handling</span> <span class="n">and</span> <span class="n">reporting</span> <span class="k">for</span> <span class="n">debugging</span> <span class="n">during</span> <span class="n">run</span> <span class="n">time</span>
+<span class="n">Monitor</span> <span class="n">workflow</span> <span class="n">execution</span>
+<span class="n">Pause</span><span class="o">/</span><span class="n">resume</span> <span class="n">or</span> <span class="n">cancel</span> <span class="n">workflow</span> <span class="n">execution</span>
+<span class="n">Manage</span> <span class="n">previous</span> <span class="n">runs</span> <span class="n">and</span> <span class="n">workflow</span> <span class="n">results</span>
+<span class="n">View</span> <span class="n">intermediate</span> <span class="n">results</span> <span class="n">and</span> <span class="n">debug</span> <span class="n">workflows</span> <span class="n">at</span> <span class="n">run</span> <span class="n">time</span>
+<span class="n">Filter</span> <span class="n">and</span> <span class="n">save</span> <span class="n">intermediate</span> <span class="n">and</span> <span class="n">final</span> <span class="n">workflow</span> <span class="n">results</span>
+</pre></div>
+
+
+<p>Track workflow runs and results</p>
+<div class="codehilite"><pre><span class="n">Record</span> <span class="n">workflow</span> <span class="n">execution</span> <span class="n">provenance</span>
+<span class="n">Review</span> <span class="n">provenance</span> <span class="n">of</span> <span class="n">previous</span> <span class="n">workflow</span> <span class="n">runs</span>
+<span class="n">Experimental</span> <span class="n">export</span> <span class="n">of</span> <span class="n">provenance</span> <span class="n">in</span> <span class="n">the</span> <span class="n">OPM</span> <span class="n">and</span> <span class="n">Janus</span> <span class="n">formats</span>
+</pre></div>
+
+
+<p>Support</p>
+<div class="codehilite"><pre><span class="n">End</span> <span class="n">user</span> <span class="n">technical</span> <span class="n">support</span> <span class="n">and</span> <span class="n">e</span><span class="o">-</span><span class="n">mail</span> <span class="n">help</span> <span class="n">desk</span>
+<span class="n">Tutorials</span> <span class="n">and</span> <span class="n">workshops</span>
+</pre></div>
+
+
+<p>Introduction</p>
+<div class="codehilite"><pre><span class="n">Taverna</span> <span class="n">features</span>
+ <span class="n">myExperiment</span> <span class="n">integration</span>
+ <span class="n">BioCatalogue</span> <span class="n">integration</span>
+<span class="n">Why</span> <span class="n">use</span> <span class="n">workflows</span>?
+<span class="n">What</span> <span class="n">is</span> â<span class="n">in</span> <span class="n">silico</span>â <span class="n">experimentation</span>?
+<span class="n">What</span> <span class="n">is</span> <span class="n">a</span> <span class="n">Workflow</span> <span class="n">Management</span> <span class="n">System</span>?
+<span class="n">How</span> <span class="n">can</span> <span class="n">Taverna</span> <span class="n">help</span> <span class="n">me</span>?
+<span class="n">Services</span> <span class="n">in</span> <span class="n">Taverna</span>
+<span class="n">Taverna</span> <span class="n">in</span> <span class="n">use</span>
+ <span class="n">By</span> <span class="n">domain</span>
+ <span class="n">As</span> <span class="n">a</span> <span class="n">server</span>
+ <span class="n">On</span> <span class="n">a</span> <span class="n">grid</span>
+ <span class="n">On</span> <span class="n">a</span> <span class="n">cloud</span>
+ <span class="n">Behind</span> <span class="n">a</span> <span class="n">portal</span>
+ <span class="n">Bundled</span> <span class="n">with</span> <span class="n">products</span>
+<span class="n">Taverna</span> <span class="n">in</span> <span class="n">use</span> <span class="n">chronology</span>
+<span class="n">Related</span> <span class="n">projects</span>
+<span class="n">Works</span> <span class="n">with</span>â¦
+ <span class="n">Bioconductor</span>
+ <span class="n">SoapLab</span>
+ <span class="n">R</span>
+ <span class="n">SADI</span>
+ <span class="n">Biomart</span>
+<span class="n">Taverna</span> <span class="n">Roadmap</span>
+
+<span class="n">EPSRC</span>
+<span class="n">BBSRC</span>
+<span class="n">ESRC</span>
+<span class="n">EU</span> <span class="n">FP7</span>
+</pre></div></div>
+
+ </div>
+
+ <footer class="footer">
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