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Posted to notifications@ctakes.apache.org by "ASF subversion and git services (JIRA)" <ji...@apache.org> on 2013/08/27 18:41:53 UTC
[jira] [Commented] (CTAKES-156) java.io.FileNotFoundException:
lookup/rxnorm_index when using
DictionaryLookupAnnotator_sideEffectUMLS.xml
[ https://issues.apache.org/jira/browse/CTAKES-156?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=13751417#comment-13751417 ]
ASF subversion and git services commented on CTAKES-156:
--------------------------------------------------------
Commit 1517871 from james-masanz@apache.org in branch 'ctakes/trunk'
[ https://svn.apache.org/r1517871 ]
CTAKES-156 - resources missing "org/apache/ctakes/dictionary/" at start of path
> java.io.FileNotFoundException: lookup/rxnorm_index when using DictionaryLookupAnnotator_sideEffectUMLS.xml
> -----------------------------------------------------------------------------------------------------------
>
> Key: CTAKES-156
> URL: https://issues.apache.org/jira/browse/CTAKES-156
> Project: cTAKES
> Issue Type: Bug
> Components: ctakes-side-effect
> Affects Versions: 3.0-incubating, 3.1
> Reporter: James Joseph Masanz
> Fix For: 3.1
>
>
> Using RC7 of 3.0.0-incubating:
> 2/8/13 2:10:15 PM - 10: org.apache.uima.tools.cvd.MainFrame.handleException(527): SEVERE: Exception occurred
> org.apache.uima.resource.ResourceInitializationException
> at org.apache.ctakes.core.resource.LuceneIndexReaderResourceImpl.load(LuceneIndexReaderResourceImpl.java:79)
> Caused by: java.io.FileNotFoundException: lookup/rxnorm_index
> at org.apache.ctakes.core.resource.FileLocator.locateExplicitly(FileLocator.java:69)
> at org.apache.ctakes.core.resource.FileLocator.locateFile(FileLocator.java:44)
> at org.apache.ctakes.core.resource.LuceneIndexReaderResourceImpl.load(LuceneIndexReaderResourceImpl.java:57)
> ... 59 more
> DictionaryLookupAnnotator_sideEffectUMLS.xml contains this line
> <string>lookup/rxnorm_index</string>
> whereas DictionaryLookupAnnotator_sideEffect.xml contains this line
> <string>org/apache/ctakes/dictionary/lookup/drug_index</string>
> Personally I don't think this is severe enough to hold up the release of 3.0.0, but if we have to create a new RC for some other reason, should consider adding it to the next RC
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