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Posted to github@arrow.apache.org by "avantgardnerio (via GitHub)" <gi...@apache.org> on 2023/08/13 11:51:00 UTC
[GitHub] [arrow-datafusion] avantgardnerio commented on a diff in pull request #7250: Request for Comment: Native `TopK` Operator
avantgardnerio commented on code in PR #7250:
URL: https://github.com/apache/arrow-datafusion/pull/7250#discussion_r1292769122
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datafusion/core/src/physical_plan/topk/mod.rs:
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@@ -0,0 +1,516 @@
+// Licensed to the Apache Software Foundation (ASF) under one
+// or more contributor license agreements. See the NOTICE file
+// distributed with this work for additional information
+// regarding copyright ownership. The ASF licenses this file
+// to you under the Apache License, Version 2.0 (the
+// "License"); you may not use this file except in compliance
+// with the License. You may obtain a copy of the License at
+//
+// http://www.apache.org/licenses/LICENSE-2.0
+//
+// Unless required by applicable law or agreed to in writing,
+// software distributed under the License is distributed on an
+// "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+// KIND, either express or implied. See the License for the
+// specific language governing permissions and limitations
+// under the License.
+
+//! TopK: Combination of Sort / LIMIT
+
+use arrow::{
+ compute::interleave,
+ row::{OwnedRow, RowConverter, Rows, SortField},
+};
+use std::{cmp::Ordering, sync::Arc};
+
+use arrow_array::{Array, ArrayRef, RecordBatch};
+use arrow_schema::SchemaRef;
+use datafusion_common::Result;
+use datafusion_execution::{
+ memory_pool::{MemoryConsumer, MemoryReservation},
+ runtime_env::RuntimeEnv,
+};
+use datafusion_physical_expr::PhysicalSortExpr;
+use hashbrown::HashMap;
+
+use crate::physical_plan::{stream::RecordBatchStreamAdapter, SendableRecordBatchStream};
+
+use super::metrics::{BaselineMetrics, Count, ExecutionPlanMetricsSet, MetricBuilder};
+
+/// Global TopK
+///
+/// # Background
+///
+/// "Top K" is a common query optimization used for queries such as
+/// "find the top 3 customers by revenue". The (simplified) SQL for
+/// such a query might be:
+///
+/// ```sql
+/// SELECT customer_id, revenue FROM 'sales.csv' ORDER BY revenue DESC limit 3;
+/// ```
+///
+/// The simple plan would be:
+///
+/// ```
+/// > explain SELECT customer_id, revenue FROM sales ORDER BY revenue DESC limit 3;
+/// +--------------+----------------------------------------+
+/// | plan_type | plan |
+/// +--------------+----------------------------------------+
+/// | logical_plan | Limit: 3 |
+/// | | Sort: revenue DESC NULLS FIRST |
+/// | | Projection: customer_id, revenue |
+/// | | TableScan: sales |
+/// +--------------+----------------------------------------+
+/// ```
+///
+/// While this plan produces the correct answer, it will fully sorts the
+/// input before discarding everything other than the top 3 elements.
+///
+/// The same answer can be produced by simply keeping track of the top
+/// N elements, reducing the total amount of required buffer memory.
+///
+/// # Structure
+///
+/// This operator tracks the top K items using a `TopKHeap`.
+pub struct TopK {
+ /// schema of the output (and the input)
+ schema: SchemaRef,
+ /// Runtime metrics
+ metrics: TopKMetrics,
+ /// Reservation
+ reservation: MemoryReservation,
+ /// The target number of rows for output batches
+ batch_size: usize,
+ /// sort expressions
+ expr: Arc<[PhysicalSortExpr]>,
+ /// row converter, for sort keys
+ row_converter: RowConverter,
+ /// scratch space for converting rows
+ scratch_rows: Rows,
+ /// stores the top k values and their sort key values, in order
+ heap: TopKHeap,
+}
+
+impl TopK {
+ /// Create a new [`TopK`] that stores the top `k` values, as
+ /// defined by the sort expressions in `expr`.
+ // TOOD: make a builder or some other nicer API to avoid the
+ // clippy warning
+ #[allow(clippy::too_many_arguments)]
+ pub fn try_new(
+ partition_id: usize,
+ schema: SchemaRef,
+ expr: Vec<PhysicalSortExpr>,
+ k: usize,
+ batch_size: usize,
+ runtime: Arc<RuntimeEnv>,
+ metrics: &ExecutionPlanMetricsSet,
+ partition: usize,
+ ) -> Result<Self> {
+ let reservation = MemoryConsumer::new(format!("TopK[{partition_id}]"))
+ .register(&runtime.memory_pool);
+
+ let expr: Arc<[PhysicalSortExpr]> = expr.into();
+
+ let sort_fields: Vec<_> = expr
+ .iter()
+ .map(|e| {
+ Ok(SortField::new_with_options(
+ e.expr.data_type(&schema)?,
+ e.options,
+ ))
+ })
+ .collect::<Result<_>>()?;
+
+ let row_converter = RowConverter::new(sort_fields)?;
+ let scratch_rows = row_converter.empty_rows(
+ batch_size,
+ 20 * batch_size, // guestimate 20 bytes per row
+ );
+
+ Ok(Self {
+ schema,
+ metrics: TopKMetrics::new(metrics, partition),
+ reservation,
+ batch_size,
+ expr,
+ row_converter,
+ scratch_rows,
+ heap: TopKHeap::new(k),
+ })
+ }
+
+ /// Insert `batch`, remembering it if any of its values are among
+ /// the top k seen so far.
+ pub fn insert_batch(&mut self, batch: RecordBatch) -> Result<()> {
+ // Updates on drop
+ let _timer = self.metrics.baseline.elapsed_compute().timer();
+
+ let sort_keys: Vec<ArrayRef> = self
+ .expr
+ .iter()
+ .map(|expr| {
+ let value = expr.expr.evaluate(&batch)?;
+ Ok(value.into_array(batch.num_rows()))
+ })
+ .collect::<Result<Vec<_>>>()?;
+
+ // reuse existing `Rows` to avoid reallocations
+ let rows = &mut self.scratch_rows;
+ rows.clear();
+ self.row_converter.append(rows, &sort_keys)?;
+
+ // TODO make this algorithmically better?:
+ // 1. only check topk values in rows
+ // 2. only do one update through top_k
+
+ let mut batch_entry = self.heap.register_batch(batch);
+ for (index, row) in rows.iter().enumerate() {
+ match self.heap.k_largest() {
+ // heap has k items, and the current row is not
+ // smaller than the curret smallest k value, skip
+ Some(largest) if largest.row.row() <= row => {}
+ // don't yet have k items or new item is greater than
+ // current min top k
+ None | Some(_) => {
+ self.heap.add(&mut batch_entry, row.owned(), index);
+ self.metrics.row_replacements.add(1);
+ }
+ }
+ }
+ self.heap.insert_batch_entry(batch_entry);
+
+ // update memory reservation
+ self.reservation.try_resize(self.size())?;
+ Ok(())
+ }
+
+ /// Returns the top k results broken into `batch_size` [`RecordBatch`]es
+ pub fn emit(self) -> Result<SendableRecordBatchStream> {
+ let Self {
+ schema,
+ metrics,
+ reservation: _,
+ batch_size,
+ expr: _,
+ row_converter: _,
+ scratch_rows: _,
+ heap,
+ } = self;
+ let _timer = metrics.baseline.elapsed_compute().timer(); // time updated on drop
+
+ let mut batch = heap.emit(schema.clone())?;
+ metrics.baseline.output_rows().add(batch.num_rows());
+
+ // break into record batches as needed
+ let mut batches = vec![];
+ loop {
+ if batch.num_rows() < batch_size {
+ batches.push(Ok(batch));
+ break;
+ } else {
+ batches.push(Ok(batch.slice(0, batch_size)));
+ batch = batch.slice(batch_size, batch.num_rows());
+ }
+ }
+ Ok(Box::pin(RecordBatchStreamAdapter::new(
+ schema,
+ futures::stream::iter(batches),
+ )))
+ }
+
+ /// return the size of memory used by this operator, in bytes
+ fn size(&self) -> usize {
+ std::mem::size_of::<Self>()
+ + self.row_converter.size()
+ + self.scratch_rows.size()
+ + self.heap.size()
+ }
+}
+
+struct TopKMetrics {
+ /// metrics
+ pub baseline: BaselineMetrics,
+
+ /// count of how many rows were replaced in the heap
+ pub row_replacements: Count,
+}
+
+impl TopKMetrics {
+ fn new(metrics: &ExecutionPlanMetricsSet, partition: usize) -> Self {
+ Self {
+ baseline: BaselineMetrics::new(metrics, partition),
+ row_replacements: MetricBuilder::new(metrics)
+ .counter("row_replacements", partition),
+ }
+ }
+}
+
+/// This structure keeps at most the *smallest* k items, using the
+/// [arrow::row] format for sort keys. While it is called "topK" for
+/// values like `1, 2, 3, 4, 5` the "top 3" really means the
+/// *smallest* 3 , `1, 2, 3`, not the *largest* 3 `3, 4, 5`.
+///
+/// Using the `Row` format handles things such as ascending vs
+/// descending and nulls first vs nulls last.
+///
+/// It doesn't use `BinaryHeap` in the Rust standard library because
+/// it is important to check the current minimum value in the heap
+/// prior to creating a new value to insert.
+struct TopKHeap {
+ /// The maximum size of this heap.
+ k: usize,
+ /// Storage for up at most `k` items, in ascending
+ /// order. `inner[0]` holds the smallest value of the smallest k
+ /// so far, `inner[len-1]` holds the largest value smallest k so far.
+ inner: Vec<TopKRow>,
Review Comment:
> critical not to have to actually construct an owned something
So if I understand correctly, you are keeping OwnedRows in your `Vec`/`BTreeSet`, but you are doing a comparison like:
```
let new_row = Row;
let vec = SortedVec<OwnedRow>;
if new_row > vec.last().as_row() {
// fail fast
}
```
If so, I think you could use the BinaryHeap<OwnedRow> the same way, just by calling `.peek()` to get the "worst" value.
> largest (or smallest) value in the heap
They have an [example](https://doc.rust-lang.org/stable/std/collections/struct.BinaryHeap.html#min-heap) of making it a min-heap with `Reverse`.
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