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Posted to commits@mxnet.apache.org by GitBox <gi...@apache.org> on 2020/01/15 07:52:41 UTC
[GitHub] [incubator-mxnet] ronnac opened a new issue #17315: mvn install
scala package sigsev mxnet::TShape::Size()
ronnac opened a new issue #17315: mvn install scala package sigsev mxnet::TShape::Size()
URL: https://github.com/apache/incubator-mxnet/issues/17315
## Description
mvn install of the scala package fails on armhf 32bit with SIGSEGV at
Building MXNet Scala Package - Core INTERNAL [6/12]
T E S T S
test Visualize
Problematic frame:
# C [libmxnet.so+0x929e54] mxnet::TShape::Size() const+0x10
### Error Messages
```
[INFO] [INFO] --------------------< org.apache.mxnet:mxnet-core >--------------------- [INFO] Building MXNet Scala Package - Core INTERNAL [6/12] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-enforcer-plugin:1.4.1:enforce (enforce-maven-version) @ mxnet-core --- [INFO] [INFO] --- directory-maven-plugin:0.1:directory-of (directories) @ mxnet-core --- [INFO] Directory of org.apache.mxnet:mxnet-parent set to: /root/mxnet/scala-package [INFO] [INFO] --- scala-maven-plugin:3.4.4:add-source (compile) @ mxnet-core --- [INFO] Add Source directory: /root/mxnet/scala-package/core/src/main/scala [INFO] Add Test Source directory: /root/mxnet/scala-package/core/src/test/scala [INFO] [INFO] --- exec-maven-plugin:1.6.0:exec (init-build-flavor) @ mxnet-core --- ldd: /root/mxnet/scala-package/core/../lib/libmxnet.so: No such file or directory [INFO] [INFO] --- properties-maven-plugin:1.0.0:read-project-properties (read-properties) @ mxnet-core --- [INFO] [INFO] --- exec-maven-plugin:1.6.0:exec (apidoc-generation) @ mxnet-core --- [INFO] [INFO] --- maven-remote-resources-plugin:1.5:process (process-resource-bundles) @ mxnet-core --- [INFO] [INFO] --- maven-resources-plugin:2.7:resources (default-resources) @ mxnet-core --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /root/mxnet/scala-package/core/src/main/resources [INFO] Copying 3 resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ mxnet-core --- [INFO] Not compiling main sources [INFO] [INFO] --- scala-maven-plugin:3.4.4:compile (compile) @ mxnet-core --- [INFO] /root/mxnet/scala-package/core/src/main/scala:-1: info: compiling [INFO] Compiling 78 source files to /root/mxnet/scala-package/core/target/classes at 1579013383658 [INFO] compiler plugin: BasicArtifact(org.scalamacros,paradise_2.11.8,2.1.0,null) [WARNING] /root/mxnet/scala-package/core/src/main/scala/org/apache/mxnet/Executor.scala:139: warning: constructor NDArray in class NDArray is deprecated: Please use ResourceScope instead [WARNING] val argArrays = inArgs.map(new NDArray(_)).toArray [WARNING] ^ [WARNING] /root/mxnet/scala-package/core/src/main/scala/org/apache/mxnet/Executor.scala:141: warning: constructor NDArray in class NDArray is deprecated: Please use ResourceScope instead [WARNING] if (handle == 0) null else new NDArray(handle)).toArray [WARNING] ^ [WARNING] /root/mxnet/scala-package/core/src/main/scala/org/apache/mxnet/Executor.scala:142: warning: constructor NDArray in class NDArray is deprecated: Please use ResourceScope instead [WARNING] val auxArrays = auxStates.map(new NDArray(_)).toArray [WARNING] ^ [WARNING] /root/mxnet/scala-package/core/src/main/scala/org/apache/mxnet/Executor.scala:163: warning: constructor NDArray in class NDArray is deprecated: Please use ResourceScope instead [WARNING] val nd = new NDArray(ele, addToCollector = false) [WARNING] ^ [WARNING] /root/mxnet/scala-package/core/src/main/scala/org/apache/mxnet/Monitor.scala:54: warning: constructor NDArray in class NDArray is deprecated: Please use ResourceScope instead [WARNING] val array = new NDArray(arr, writable = false, addToCollector = false) [WARNING] ^ [WARNING] /root/mxnet/scala-package/core/src/main/scala/org/apache/mxnet/NDArray.scala:129: warning: constructor NDArray in class NDArray is deprecated: Please use ResourceScope instead [WARNING] case 0 => new NDArray(ele._1) [WARNING] ^ [WARNING] /root/mxnet/scala-package/core/src/main/scala/org/apache/mxnet/NDArray.scala:234: warning: constructor NDArray in class NDArray is deprecated: Please use ResourceScope instead [WARNING] new NDArray(handle = NDArray.newAllocHandle(shape, context, delayAlloc = false, dtype)) [WARNING] ^ [WARNING] /root/mxnet/scala-package/core/src/main/scala/org/apache/mxnet/NDArray.scala:691: warning: constructor NDArray in class NDArray is deprecated: Please use ResourceScope instead [WARNING] (names.toArray, handles.map(new NDArray(_)).toArray) [WARNING] ^ [WARNING] /root/mxnet/scala-package/core/src/main/scala/org/apache/mxnet/NDArray.scala:737: warning: constructor NDArray in class NDArray is deprecated: Please use ResourceScope instead [WARNING] new NDArray(handleRef.value) [WARNING] ^ [WARNING] /root/mxnet/scala-package/core/src/main/scala/org/apache/mxnet/NDArray.scala:1294: warning: constructor NDArray in class NDArray is deprecated: Please use ResourceScope instead [WARNING] val ret = new NDArray(NDArray.newAllocHandle(shape, ctx, delayAlloc = true, dtype = dtype)) [WARNING] ^ [WARNING] /root/mxnet/scala-package/core/src/main/scala/org/apache/mxnet/Operator.scala:75: warning: constructor NDArray in class NDArray is deprecated: Please use ResourceScope instead [WARNING] tensors(tags(i)) += new NDArray(ndarraies(i), writable = true, addToCollector = false) [WARNING] ^ [WARNING] /root/mxnet/scala-package/core/src/main/scala/org/apache/mxnet/Operator.scala:77: warning: constructor NDArray in class NDArray is deprecated: Please use ResourceScope instead [WARNING] tensors(tags(i)) += new NDArray(ndarraies(i), writable = false, addToCollector = false) [WARNING] ^ [WARNING] 12 warnings found [INFO] prepare-compile in 0 s [INFO] compile in 197 s [INFO] [INFO] --- maven-resources-plugin:2.7:testResources (default-testResources) @ mxnet-core --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] Copying 3 resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ mxnet-core --- [INFO] Not compiling test sources [INFO] [INFO] --- scala-maven-plugin:3.4.4:testCompile (compile) @ mxnet-core --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-surefire-plugin:2.22.0:test (default-test) @ mxnet-core --- [INFO] Surefire report directory: /root/mxnet/scala-package/core/target/surefire-reports [INFO] [INFO] ------------------------------------------------------- [INFO] T E S T S [INFO] ------------------------------------------------------- [INFO] [INFO] Results: [INFO] [INFO] Tests run: 0, Failures: 0, Errors: 0, Skipped: 0 [INFO] [INFO] [INFO] --- maven-jar-plugin:3.0.2:jar (default-jar) @ mxnet-core --- [INFO] Building jar: /root/mxnet/scala-package/core/target/mxnet-core-INTERNAL.jar [INFO] [INFO] --- maven-site-plugin:3.7:attach-descriptor (attach-descriptor) @ mxnet-core --- [INFO] Skipping because packaging 'jar' is not pom. [INFO] [INFO] --- maven-source-plugin:2.2.1:jar-no-fork (attach-sources) @ mxnet-core --- [INFO] Building jar: /root/mxnet/scala-package/core/target/mxnet-core-INTERNAL-sources.jar [INFO] [INFO] >>> scala-maven-plugin:3.4.4:doc-jar (compile) > generate-resources @ mxnet-core >>> [INFO] [INFO] --- maven-enforcer-plugin:1.4.1:enforce (enforce-maven-version) @ mxnet-core --- [INFO] [INFO] --- directory-maven-plugin:0.1:directory-of (directories) @ mxnet-core --- [INFO] Directory of org.apache.mxnet:mxnet-parent set to: /root/mxnet/scala-package [INFO] [INFO] --- scala-maven-plugin:3.4.4:add-source (compile) @ mxnet-core --- [INFO] [INFO] --- exec-maven-plugin:1.6.0:exec (init-build-flavor) @ mxnet-core --- ldd: /root/mxnet/scala-package/core/../lib/libmxnet.so: No such file or directory [INFO] [INFO] --- properties-maven-plugin:1.0.0:read-project-properties (read-properties) @ mxnet-core --- [INFO] [INFO] --- exec-maven-plugin:1.6.0:exec (apidoc-generation) @ mxnet-core --- [INFO] [INFO] --- maven-remote-resources-plugin:1.5:process (process-resource-bundles) @ mxnet-core --- [INFO] [INFO] <<< scala-maven-plugin:3.4.4:doc-jar (compile) < generate-resources @ mxnet-core <<< [INFO] [INFO] [INFO] --- scala-maven-plugin:3.4.4:doc-jar (compile) @ mxnet-core --- model contains 281 documentable templates /root/mxnet/scala-package/core/src/main/scala/org/apache/mxnet/module/BaseModule.scala:381: warning: Could not find any member to link for "IOException". /** ^ /root/mxnet/scala-package/core/src/main/scala/org/apache/mxnet/NDArray.scala:533: warning: Could not find any member to link for "IllegalArgumentException". /** ^ two warnings found [INFO] Building jar: /root/mxnet/scala-package/core/target/mxnet-core-INTERNAL-javadoc.jar [INFO] [INFO] --- scalatest-maven-plugin:1.0:test (test) @ mxnet-core --- Discovery starting. Discovery completed in 17 seconds, 762 milliseconds. Run starting. Expected test count is: 180 NDArraySuite: 2020-01-14 15:56:41,779 [ScalaTest-main-running-NDArraySuite] [MXNetJVM] [INFO] - Try loading mxnet-scala from native path. - to java array - to scalar - to sparse - to float 64 scalar - call toScalar on an ndarray which is not a scalar - size and shape - dtype - set scalar value - copy from java array - create NDArray based on Java Matrix - test Visualize # # A fatal error has been detected by the Java Runtime Environment: # # SIGSEGV (0xb) at pc=0xd81e2e54, pid=13067, tid=0xf0b4f460 # # JRE version: OpenJDK Runtime Environment (8.0_232-b09) (build 1.8.0_232-8u232-b09-0ubuntu1~19.04.1-b09) # Java VM: OpenJDK Client VM (25.232-b09 mixed mode linux-aarch32 ) # Problematic frame: # C [libmxnet.so+0x929e54] mxnet::TShape::Size() const+0x10 # # Core dump written. Default location: /root/mxnet/scala-package/core/core or core.13067 # # An error report file with more information is saved as: # /root/mxnet/scala-package/core/hs_err_pid13067.log # # If you would like to submit a bug report, please visit: # http://bugreport.java.com/bugreport/crash.jsp # The crash happened outside the Java Virtual Machine in native code. # See problematic frame for where to report the bug. # Aborted (core dumped) [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary: [INFO] [INFO] MXNet Scala Package - Parent INTERNAL .............. SUCCESS [ 33.529 s] [INFO] MXNet Scala Package - Initializer INTERNAL ......... SUCCESS [ 39.652 s] [INFO] MXNet Scala Package - Initializer Native INTERNAL .. SUCCESS [ 7.803 s] [INFO] MXNet Scala Package - Macros INTERNAL .............. SUCCESS [ 37.122 s] [INFO] MXNet Scala Package - Native INTERNAL .............. SUCCESS [ 8.447 s] [INFO] MXNet Scala Package - Core INTERNAL ................ FAILURE [07:08 min] [INFO] MXNet Scala Package - Inference INTERNAL ........... SKIPPED [INFO] MXNet Scala Package - Examples INTERNAL ............ SKIPPED [INFO] MXNet Scala Package - Spark ML INTERNAL ............ SKIPPED [INFO] Assembly Scala Package INTERNAL .................... SKIPPED [INFO] MXNet Scala Package - Full linux-x86_64-only 1.6.0-SNAPSHOT SKIPPED [INFO] MXNet Scala Package - Full linux-x86_64-only 1.6.0-SNAPSHOT SKIPPED [INFO] ------------------------------------------------------------------------ [INFO] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Total time: 09:18 min [INFO] Finished at: 2020-01-14T15:56:44+01:00 [INFO] ------------------------------------------------------------------------ [ERROR] Failed to execute goal org.scalatest:scalatest-maven-plugin:1.0:test (test) on project mxnet-core: There are test failures -> [Help 1] org.apache.maven.lifecycle.LifecycleExecutionException: Failed to execute goal org.scalatest:scalatest-maven-plugin:1.0:test (test) on project mxnet-core: There are test failures at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:215) at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:156) at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:148) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject (LifecycleModuleBuilder.java:117) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject (LifecycleModuleBuilder.java:81) at org.apache.maven.lifecycle.internal.builder.singlethreaded.SingleThreadedBuilder.build (SingleThreadedBuilder.java:56) at org.apache.maven.lifecycle.internal.LifecycleStarter.execute (LifecycleStarter.java:128) at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:305) at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:192) at org.apache.maven.DefaultMaven.execute (DefaultMaven.java:105) at org.apache.maven.cli.MavenCli.execute (MavenCli.java:956) at org.apache.maven.cli.MavenCli.doMain (MavenCli.java:288) at org.apache.maven.cli.MavenCli.main (MavenCli.java:192) at sun.reflect.NativeMethodAccessorImpl.invoke0 (Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke (NativeMethodAccessorImpl.java:62) at sun.reflect.DelegatingMethodAccessorImpl.invoke (DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke (Method.java:498) at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced (Launcher.java:282) at org.codehaus.plexus.classworlds.launcher.Launcher.launch (Launcher.java:225) at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode (Launcher.java:406) at org.codehaus.plexus.classworlds.launcher.Launcher.main (Launcher.java:347) Caused by: org.apache.maven.plugin.MojoFailureException: There are test failures at org.scalatest.tools.maven.TestMojo.execute (TestMojo.java:107) at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo (DefaultBuildPluginManager.java:137) at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:210) at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:156) at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:148) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject (LifecycleModuleBuilder.java:117) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject (LifecycleModuleBuilder.java:81) at org.apache.maven.lifecycle.internal.builder.singlethreaded.SingleThreadedBuilder.build (SingleThreadedBuilder.java:56) at org.apache.maven.lifecycle.internal.LifecycleStarter.execute (LifecycleStarter.java:128) at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:305) at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:192) at org.apache.maven.DefaultMaven.execute (DefaultMaven.java:105) at org.apache.maven.cli.MavenCli.execute (MavenCli.java:956) at org.apache.maven.cli.MavenCli.doMain (MavenCli.java:288) at org.apache.maven.cli.MavenCli.main (MavenCli.java:192) at sun.reflect.NativeMethodAccessorImpl.invoke0 (Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke (NativeMethodAccessorImpl.java:62) at sun.reflect.DelegatingMethodAccessorImpl.invoke (DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke (Method.java:498) at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced (Launcher.java:282) at org.codehaus.plexus.classworlds.launcher.Launcher.launch (Launcher.java:225) at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode (Launcher.java:406) at org.codehaus.plexus.classworlds.launcher.Launcher.main (Launcher.java:347) [ERROR] [ERROR] Re-run Maven using the -X switch to enable full debug logging. [ERROR] [ERROR] For more information about the errors and possible solutions, please read the following articles: [ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException [ERROR] [ERROR] After correcting the problems, you can resume the build with the command [ERROR] mvn <goals> -rf :mxnet-core root@localhost ~/m/scala-package#
```
## To Reproduce
(If you developed your own code, please provide a short script that reproduces the error. For existing examples, please provide link.)
### Steps to reproduce
(Paste the commands you ran that produced the error.)
On an armhf 32bit device with linux disco :
1. build opencv3.4 from source
build mxnet from source with cmake
cd ~/mxnet/scala package
mvn install -e
## What have you tried to solve it?
## Environment
```
----------Python Info---------- ('Version :', '2.7.16')
('Compiler :', 'GCC 8.3.0')
('Build :', ('default', 'Oct 7 2019 17:36:04'))
('Arch :', ('32bit', ''))
------------Pip Info-----------
No corresponding pip install for current python. ----------MXNet Info-----------
No MXNet installed.
----------System Info---------- ('Platform :', 'Linux-4.4.111-16046393-armv8l-with-Ubuntu-19.04-disco')
('system :', 'Linux')
('node :', 'localhost')
('release :', '4.4.111-16046393')
('version :', '#1 SMP PREEMPT Wed Oct 9 14:44:51 KST 2019')
----------Hardware Info----------
('machine :', 'armv8l')
('processor :', 'armv8l')
lscpu: failed to determine number of CPUs: /sys/devices/system/cpu/possible: No such file or directory
----------cat /proc/cpuinfo---------- processor : 0
model name : ARMv8 Processor rev 4 (v8l)
BogoMIPS : 52.00
Features : half thumb fastmult vfp edsp neon vfpv3 tls vfpv4 idiva idivt lpae evtstrm aes pmull sha1 sha2 crc32
CPU implementer : 0x41
CPU architecture: 8
CPU variant : 0x0
CPU part : 0xd03
CPU revision : 4
processor : 1
model name : ARMv8 Processor rev 4 (v8l)
BogoMIPS : 52.00 Features : half thumb fastmult vfp edsp neon vfpv3 tls vfpv4 idiva idivt lpae evtstrm aes pmull sha1 sha2 crc32
CPU implementer : 0x41
CPU architecture: 8
CPU variant : 0x0
CPU part : 0xd03
CPU revision : 4
processor : 2
model name : ARMv8 Processor rev 4 (v8l)
BogoMIPS : 52.00 Features : half thumb fastmult vfp edsp neon vfpv3 tls vfpv4 idiva idivt lpae evtstrm aes pmull sha1 sha2 crc32 CPU implementer : 0x41 CPU architecture: 8
CPU variant : 0x0
CPU part : 0xd03
CPU revision : 4
processor : 3
model name : ARMv8 Processor rev 4 (v8l)
BogoMIPS : 52.00 Features : half thumb fastmult vfp edsp neon vfpv3 tls vfpv4 idiva idivt lpae evtstrm aes pmull sha1 sha2 crc32
CPU implementer : 0x41
CPU architecture: 8
CPU variant : 0x0
CPU part : 0xd03
CPU revision : 4
processor : 4
model name : ARMv8 Processor rev 4 (v8l)
BogoMIPS : 52.00
Features : half thumb fastmult vfp edsp neon vfpv3 tls vfpv4 idiva idivt lpae evtstrm aes pmull sha1 sha2 crc32 CPU implementer : 0x41 CPU architecture: 8
CPU variant : 0x0
CPU part : 0xd03
CPU revision : 4
processor : 5
model name : ARMv8 Processor rev 4 (v8l)
BogoMIPS : 52.00 Features : half thumb fastmult vfp edsp neon vfpv3 tls vfpv4 idiva idivt lpae evtstrm aes pmull sha1 sha2 crc32
CPU implementer : 0x41
CPU architecture: 8
CPU variant : 0x0
CPU part : 0xd03
CPU revision : 4
processor : 6
model name : ARMv8 Processor rev 2 (v8l)
BogoMIPS : 52.00
Features : half thumb fastmult vfp edsp neon vfpv3 tls vfpv4 idiva idivt lpae evtstrm aes pmull sha1 sha2 crc32 CPU implementer : 0x41 CPU architecture: 8
CPU variant : 0x0
CPU part : 0xd09
CPU revision : 2
processor : 7
model name : ARMv8 Processor rev 2 (v8l)
BogoMIPS : 52.00
Features : half thumb fastmult vfp edsp neon vfpv3 tls vfpv4 idiva idivt lpae evtstrm aes pmull sha1 sha2 crc32
CPU implementer : 0x41
CPU architecture: 8
CPU variant : 0x0
CPU part : 0xd09
CPU revision : 2
----------Network Test---------- Setting timeout: 10 Timing for PYPI: https://pypi.python.org/pypi/pip, DNS: 0.0807 sec, LOAD: 1.7457 sec.
Timing for D2L: http://d2l.ai, DNS: 0.0656 sec, LOAD: 0.2946 sec.
Timing for FashionMNIST: https://repo.mxnet.io/gluon/dataset/fashion-mnist/train-labels-idx1-ubyte.gz, DNS: 0.2743 sec, LOAD: 0.9302 sec.
Timing for Conda: https://repo.continuum.io/pkgs/free/, DNS: 0.0487 sec, LOAD: 0.5180 sec. Timing for MXNet: https://github.com/apache/incubator-mxnet, DNS: 0.0375 sec, LOAD: 0.8872 sec. Timing for GluonNLP: http://gluon-nlp.mxnet.io, DNS: 0.0857 sec, LOAD: 1.1839 sec. Timing for D2L (zh-cn): http://zh.d2l.ai, DNS: 0.0722 sec, LOAD: 0.4554 sec. Timing for GluonNLP GitHub: https://github.com/dmlc/gluon-nlp, DNS: 0.0250 sec, LOAD: 0.7598 sec.
```
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