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Posted to issues@airavata.apache.org by "Eroma (JIRA)" <ji...@apache.org> on 2017/12/19 16:41:00 UTC
[jira] [Created] (AIRAVATA-2621) SSH port provided in compute
resource registration is not considered for cluster SSH communication
Eroma created AIRAVATA-2621:
-------------------------------
Summary: SSH port provided in compute resource registration is not considered for cluster SSH communication
Key: AIRAVATA-2621
URL: https://issues.apache.org/jira/browse/AIRAVATA-2621
Project: Airavata
Issue Type: Bug
Components: GFac
Affects Versions: 0.18
Environment: https://hpcgateway.gsu.edu/
https://scigap.org/
Reporter: Eroma
Assignee: Suresh Marru
Fix For: 0.18
1. Added a specific port for job submissions (15022)
2. But when submitting jobs, for environment creation, the gfac is using the default 22 port, not the specified one in scigap.org for hpclogin.gsu.edu.
3. log messages in airavata log
2017-12-19 11:13:18,996 [pool-7-thread-2] INFO o.a.airavata.gfac.impl.Factory process_id=PROCESS_3b471b3b-5b4e-4b6d-a66e-554652a390d2, token_id=35da840b-63d5-4cbf-b9ce-3005cd94d961, experiment_id=NWChem2_a38ac303-666f-4dea-9b4c-7bffe0f97dd7, gateway_id=georgiastate - Initialize a new SSH session for :airavata_hpclogin.gsu.edu_22_35da840b-63d5-4cbf-b9ce-3005cd94d961
2017-12-19 11:15:26,272 [pool-7-thread-2] ERROR o.a.a.gfac.core.GFacException process_id=PROCESS_3b471b3b-5b4e-4b6d-a66e-554652a390d2, token_id=35da840b-63d5-4cbf-b9ce-3005cd94d961, experiment_id=NWChem2_a38ac303-666f-4dea-9b4c-7bffe0f97dd7, gateway_id=georgiastate - JSch initialization error
com.jcraft.jsch.JSchException: java.net.ConnectException: Connection timed out (Connection timed out)
at com.jcraft.jsch.Util.createSocket(Util.java:349)
at com.jcraft.jsch.Session.connect(Session.java:215)
at com.jcraft.jsch.Session.connect(Session.java:183)
at org.apache.airavata.gfac.impl.Factory.getSSHSession(Factory.java:542)
at org.apache.airavata.gfac.impl.HPCRemoteCluster.getSshSession(HPCRemoteCluster.java:138)
at org.apache.airavata.gfac.impl.HPCRemoteCluster.getSession(HPCRemoteCluster.java:315)
at org.apache.airavata.gfac.impl.HPCRemoteCluster.makeDirectory(HPCRemoteCluster.java:242)
at org.apache.airavata.gfac.impl.task.EnvironmentSetupTask.execute(EnvironmentSetupTask.java:51)
at org.apache.airavata.gfac.impl.GFacEngineImpl.executeTask(GFacEngineImpl.java:814)
at org.apache.airavata.gfac.impl.GFacEngineImpl.configureWorkspace(GFacEngineImpl.java:553)
at org.apache.airavata.gfac.impl.GFacEngineImpl.executeTaskListFrom(GFacEngineImpl.java:324)
at org.apache.airavata.gfac.impl.GFacEngineImpl.executeProcess(GFacEngineImpl.java:286)
at org.apache.airavata.gfac.impl.GFacWorker.executeProcess(GFacWorker.java:227)
at org.apache.airavata.gfac.impl.GFacWorker.run(GFacWorker.java:86)
at org.apache.airavata.common.logging.MDCUtil.lambda$wrapWithMDC$0(MDCUtil.java:40)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:748)
Caused by: java.net.ConnectException: Connection timed out (Connection timed out)
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at java.net.Socket.connect(Socket.java:538)
at java.net.Socket.<init>(Socket.java:434)
at java.net.Socket.<init>(Socket.java:211)
at com.jcraft.jsch.Util.createSocket(Util.java:343)
... 17 common frames omitted
?NWChem2_a38ac303-666f-4dea-9b4c-7bffe0f97dd7
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