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Posted to commits@taverna.apache.org by st...@apache.org on 2016/05/09 09:41:21 UTC
[1/5] incubator-taverna-engine git commit: Update taverna-engine
README.md
Repository: incubator-taverna-engine
Updated Branches:
refs/heads/master a2c991972 -> b0952a383
Update taverna-engine README.md
Minor grammar edits; remove #osgi-services link because section no longer exists; one broken link NOT fixed: See the separate release of
[taverna-common-activities](taverna.incubator.apache.org/download/common-activities/) - missing http:/ and file does not exist?
Project: http://git-wip-us.apache.org/repos/asf/incubator-taverna-engine/repo
Commit: http://git-wip-us.apache.org/repos/asf/incubator-taverna-engine/commit/cdf89858
Tree: http://git-wip-us.apache.org/repos/asf/incubator-taverna-engine/tree/cdf89858
Diff: http://git-wip-us.apache.org/repos/asf/incubator-taverna-engine/diff/cdf89858
Branch: refs/heads/master
Commit: cdf8985861939be2ed4c22cfd5845336a7dae10c
Parents: a2c9919
Author: galejwnaylor <ga...@noventussolutions.com>
Authored: Fri May 6 12:37:52 2016 -0700
Committer: galejwnaylor <ga...@noventussolutions.com>
Committed: Fri May 6 12:37:52 2016 -0700
----------------------------------------------------------------------
README.md | 18 +++++++++---------
1 file changed, 9 insertions(+), 9 deletions(-)
----------------------------------------------------------------------
http://git-wip-us.apache.org/repos/asf/incubator-taverna-engine/blob/cdf89858/README.md
----------------------------------------------------------------------
diff --git a/README.md b/README.md
index 90e0c27..0959cfb 100644
--- a/README.md
+++ b/README.md
@@ -30,7 +30,7 @@ use the engine, use the
or [Apache Taverna Server](https://github.com/apache/incubator-taverna-server/).
All Taverna Engine modules are also valid [OSGi](http://www.osgi.org/) bundles,
-providing [OSGi services](#osgi-services).
+providing OSGi services.
## License
@@ -53,10 +53,10 @@ details about embedded third-party libraries and source code.
Please subscribe to and contact the
[dev@taverna](http://taverna.incubator.apache.org/community/lists#dev mailing list)
-for any questions, suggestions and discussions about
+mailing list for any questions, suggestions and discussions about
Apache Taverna.
-Bugs and feature plannings are tracked in the Jira
+Bugs and planned features are tracked in the Jira
[Issue tracker](https://issues.apache.org/jira/browse/TAVERNA/component/12326810)
under the `TAVERNA` component _Taverna Engine_. Feel free
to add an issue!
@@ -77,7 +77,7 @@ sponsored by the [Apache Incubator PMC](http://incubator.apache.org/).
[Incubation](http://incubator.apache.org/incubation/Process_Description.html)
is required of all newly accepted projects until a further review
-indicates that the infrastructure, communications, and decision making process
+indicates that the infrastructure, communications, and decision-making process
have stabilized in a manner consistent with other successful ASF projects.
While incubation status is not necessarily a reflection of the completeness
@@ -119,9 +119,9 @@ that enforces Apache headers in every source file - to disable it, try:
# Modules
The Taverna Engine modules are generally
-split into `-api` and `-impl`. `-api` contain
-Java interfaces and abstract classes and minimal dependencies, while `-impl`
-contain the corresponding implementation(s).
+split into `-api` and `-impl`. The `-api` modules contain
+Java interfaces, abstract classes, and minimal dependencies while `-impl`
+modules contain the corresponding implementation(s).
Thus, the [taverna-common-activities](https://github.com/apache/incubator-taverna-common-activities/)
should only need to depend on the `-api` modules, while the `-impl` are added by the
@@ -190,7 +190,7 @@ a Taverna workflow, e.g. from the
There are two layers of Taverna Engine:
* Apache Taverna Platform provides an outer API for creating and managing workflow runs, potentially remotely.
-* Apache Taverna Core (aka `workflowmodel`, formerly `t2.core`) is the orchestrating part of the Taverna Engine. It's [Activity](https://taverna.incubator.apache.org/javadoc/taverna-engine/org/apache/taverna/workflowmodel/processor/activity/Activity.html) is implemented by multiple plugins depending on the activity type.
+* Apache Taverna Core (aka `workflowmodel`, formerly `t2.core`) is the orchestrating part of the Taverna Engine. Its [Activity](https://taverna.incubator.apache.org/javadoc/taverna-engine/org/apache/taverna/workflowmodel/processor/activity/Activity.html) is implemented by multiple plugins depending on the activity type.
### Preparations
@@ -319,7 +319,7 @@ The following provides more details on the included cryptographic software:
[BouncyCastle](https://www.bouncycastle.org/) bcprov encryption library.
The [JCE Unlimited Strength Jurisdiction Policy](http://www.oracle.com/technetwork/java/javase/downloads/jce8-download-2133166.html)
may need to be installed separately to use keystore passwords with 7 or more characters.
-* Apache Taverna Engine depend on
+* Apache Taverna Engine depends on
[Apache Taverna Language](http://taverna.incubator.apache.org/download/language/),
[Apache Taverna OSGi](http://taverna.incubator.apache.org/download/osgi/) and
[Apache Jena](http://jena.apache.org/), which depend on
[5/5] incubator-taverna-engine git commit: Merge remote-tracking
branch 'gale/patch-3'
Posted by st...@apache.org.
Merge remote-tracking branch 'gale/patch-3'
Project: http://git-wip-us.apache.org/repos/asf/incubator-taverna-engine/repo
Commit: http://git-wip-us.apache.org/repos/asf/incubator-taverna-engine/commit/b0952a38
Tree: http://git-wip-us.apache.org/repos/asf/incubator-taverna-engine/tree/b0952a38
Diff: http://git-wip-us.apache.org/repos/asf/incubator-taverna-engine/diff/b0952a38
Branch: refs/heads/master
Commit: b0952a383c75980b7f6957bb359e7001599febc1
Parents: df58678 8bb0c4d
Author: Stian Soiland-Reyes <st...@apache.org>
Authored: Mon May 9 10:41:01 2016 +0100
Committer: Stian Soiland-Reyes <st...@apache.org>
Committed: Mon May 9 10:41:01 2016 +0100
----------------------------------------------------------------------
taverna-reference-types/README.md | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
----------------------------------------------------------------------
[2/5] incubator-taverna-engine git commit: Update README.md Fix 2
links
Posted by st...@apache.org.
Update README.md Fix 2 links
L46 - change to equivalent Apache link
L339 - added "ttl" to end of link
-----
Things NOT FIXED:
L7 - Pref for Data and Prov - DEAD LINK
L199 - Incomplete sentence "This is the format
which will be used by"
Project: http://git-wip-us.apache.org/repos/asf/incubator-taverna-engine/repo
Commit: http://git-wip-us.apache.org/repos/asf/incubator-taverna-engine/commit/5acb2ddd
Tree: http://git-wip-us.apache.org/repos/asf/incubator-taverna-engine/tree/5acb2ddd
Diff: http://git-wip-us.apache.org/repos/asf/incubator-taverna-engine/diff/5acb2ddd
Branch: refs/heads/master
Commit: 5acb2ddd51069fe4aef6e923c35b104c616fa894
Parents: a2c9919
Author: galejwnaylor <ga...@noventussolutions.com>
Authored: Fri May 6 16:36:14 2016 -0700
Committer: galejwnaylor <ga...@noventussolutions.com>
Committed: Fri May 6 16:36:14 2016 -0700
----------------------------------------------------------------------
taverna-prov/README.md | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
----------------------------------------------------------------------
http://git-wip-us.apache.org/repos/asf/incubator-taverna-engine/blob/5acb2ddd/taverna-prov/README.md
----------------------------------------------------------------------
diff --git a/taverna-prov/README.md b/taverna-prov/README.md
index 33fe869..1aa7f4d 100644
--- a/taverna-prov/README.md
+++ b/taverna-prov/README.md
@@ -43,7 +43,7 @@ provenance:
The Taverna documentation has general information about [how to use the
Taverna Command line
-tool](http://dev.mygrid.org.uk/wiki/display/taverna/Command+Line+Tool).
+tool](https://taverna.incubator.apache.org/documentation/command-line/).
The Taverna-PROV command line does not support all the output options of
the regular Taverna command line, output has to be saved using
@@ -336,7 +336,7 @@ Now we do a lookup of the
behind the defined `?plan` - this is optional because not all processors have
scripts (it might be a web service).
This information is extracted from the
-[.ro/annotations/workflow.wfdesc.ttl](example/helloanyone.bundle/.ro/annotations/workflow.wfdesc.)
+[.ro/annotations/workflow.wfdesc.ttl](example/helloanyone.bundle/.ro/annotations/workflow.wfdesc.ttl)
file which must also be parsed before querying.
Lastly we look up the pararameters which describes `?input`, filtered by
[4/5] incubator-taverna-engine git commit: Merge remote-tracking
branch 'gale/patch-2'
Posted by st...@apache.org.
Merge remote-tracking branch 'gale/patch-2'
Project: http://git-wip-us.apache.org/repos/asf/incubator-taverna-engine/repo
Commit: http://git-wip-us.apache.org/repos/asf/incubator-taverna-engine/commit/df586782
Tree: http://git-wip-us.apache.org/repos/asf/incubator-taverna-engine/tree/df586782
Diff: http://git-wip-us.apache.org/repos/asf/incubator-taverna-engine/diff/df586782
Branch: refs/heads/master
Commit: df586782d8942dd6d1a81943dafc55706a798265
Parents: cdf8985 5acb2dd
Author: Stian Soiland-Reyes <st...@apache.org>
Authored: Mon May 9 10:40:58 2016 +0100
Committer: Stian Soiland-Reyes <st...@apache.org>
Committed: Mon May 9 10:40:58 2016 +0100
----------------------------------------------------------------------
taverna-prov/README.md | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
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[3/5] incubator-taverna-engine git commit: Update README.md - Minor
edits, one dead link
Posted by st...@apache.org.
Update README.md - Minor edits, one dead link
taverna.googlecoe.com link is broken.
Project: http://git-wip-us.apache.org/repos/asf/incubator-taverna-engine/repo
Commit: http://git-wip-us.apache.org/repos/asf/incubator-taverna-engine/commit/8bb0c4da
Tree: http://git-wip-us.apache.org/repos/asf/incubator-taverna-engine/tree/8bb0c4da
Diff: http://git-wip-us.apache.org/repos/asf/incubator-taverna-engine/diff/8bb0c4da
Branch: refs/heads/master
Commit: 8bb0c4da52543ad137d9eda9ce596316e3a6a794
Parents: a2c9919
Author: galejwnaylor <ga...@noventussolutions.com>
Authored: Fri May 6 16:46:43 2016 -0700
Committer: galejwnaylor <ga...@noventussolutions.com>
Committed: Fri May 6 16:46:43 2016 -0700
----------------------------------------------------------------------
taverna-reference-types/README.md | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
----------------------------------------------------------------------
http://git-wip-us.apache.org/repos/asf/incubator-taverna-engine/blob/8bb0c4da/taverna-reference-types/README.md
----------------------------------------------------------------------
diff --git a/taverna-reference-types/README.md b/taverna-reference-types/README.md
index faaf57d..c41442b 100644
--- a/taverna-reference-types/README.md
+++ b/taverna-reference-types/README.md
@@ -1,5 +1,5 @@
-Taverna Workflow system Execution Engine data reference management implementation
+Taverna Workflow system Execution Engine data reference management implementation.
-Implementations of certain SPIs to provide a core set of functionality for the reference management framework. This includes ExternalReference implementations to reference data held in local files and URLs along with the appropriate translate / publish logic. Implementations in this package are tied only to the API, although certain metadata files such as hibernate mappings are also included where appropriate (these will be silently ignored if using a backing store that is not hibernate based)
+Implements certain SPIs to provide a core functionality for the reference management framework. This includes ExternalReference implementations to reference data held in local files and URLs along with the appropriate translate / publish logic. Implementations in this package are tied only to the API, although certain metadata files (such as Hibernate mappings) are also included, where appropriate. (These will be silently ignored if using a backing store that is not Hibernate-based.)
-This code was previously hosted at http://taverna.googlecode.com/svn/taverna/engine/net.sf.taverna.t2.core.reference-core-extensions
+This code was previously hosted at http://taverna.googlecode.com/svn/taverna/engine/net.sf.taverna.t2.core.reference-core-extensions.