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Posted to github@arrow.apache.org by GitBox <gi...@apache.org> on 2022/04/22 15:47:19 UTC
[GitHub] [arrow] raulcd opened a new pull request, #12945: ARROW-16219: [CI] Fix git config to prevent SCM tools failure
raulcd opened a new pull request, #12945:
URL: https://github.com/apache/arrow/pull/12945
This PR fixes the CI failures due to the latest git release fixing CVE-2022-24765.
I have been able to see the build passing the scm step with the change here:
https://app.travis-ci.com/github/raulcd/arrow/builds/249688925
The above build fails due to some tests failing but not related with installation anymore.
And this was the failure before the change:
https://app.travis-ci.com/github/raulcd/arrow/builds/249683847
I also have been able to reproduce the issue on the `verify-conda-rc` locally.
The failure:
```
$ docker-compose run conda-verify-rc
....
Preparing transaction: done
Verifying transaction: done
Executing transaction: done
/arrow/python /arrow /
Traceback (most recent call last):
File "/arrow/python/setup.py", line 607, in <module>
setup(
File "/tmp/arrow-HEAD.YUVPq/mambaforge/envs/conda-source/lib/python3.10/site-packages/setuptools/__init__.py", line 87, in setup
return distutils.core.setup(**attrs)
File "/tmp/arrow-HEAD.YUVPq/mambaforge/envs/conda-source/lib/python3.10/site-packages/setuptools/_distutils/core.py", line 109, in setup
_setup_distribution = dist = klass(attrs)
File "/tmp/arrow-HEAD.YUVPq/mambaforge/envs/conda-source/lib/python3.10/site-packages/setuptools/dist.py", line 462, in __init__
_Distribution.__init__(
File "/tmp/arrow-HEAD.YUVPq/mambaforge/envs/conda-source/lib/python3.10/site-packages/setuptools/_distutils/dist.py", line 293, in __init__
self.finalize_options()
File "/tmp/arrow-HEAD.YUVPq/mambaforge/envs/conda-source/lib/python3.10/site-packages/setuptools/dist.py", line 886, in finalize_options
ep(self)
File "/tmp/arrow-HEAD.YUVPq/mambaforge/envs/conda-source/lib/python3.10/site-packages/setuptools/dist.py", line 907, in _finalize_setup_keywords
ep.load()(self, ep.name, value)
File "/tmp/arrow-HEAD.YUVPq/mambaforge/envs/conda-source/lib/python3.10/site-packages/setuptools_scm/integration.py", line 75, in version_keyword
_assign_version(dist, config)
File "/tmp/arrow-HEAD.YUVPq/mambaforge/envs/conda-source/lib/python3.10/site-packages/setuptools_scm/integration.py", line 51, in _assign_version
_version_missing(config)
File "/tmp/arrow-HEAD.YUVPq/mambaforge/envs/conda-source/lib/python3.10/site-packages/setuptools_scm/__init__.py", line 106, in _version_missing
raise LookupError(
LookupError: setuptools-scm was unable to detect version for /arrow.
Make sure you're either building from a fully intact git repository or PyPI tarballs. Most other sources (such as GitHub's tarballs, a git checkout without the .git folder) don't contain the necessary metadata and will not work.
For example, if you're using pip, instead of https://github.com/user/proj/archive/master.zip use git+https://github.com/user/proj.git#egg=proj
Failed to verify release candidate. See /tmp/arrow-HEAD.YUVPq for details.
```
Waiting to validate the verify-rc fix at the moment, will update once the local build finishes
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[GitHub] [arrow] pitrou commented on a diff in pull request #12945: ARROW-162219: [CI] Fix git config to prevent SCM tools failure
Posted by GitBox <gi...@apache.org>.
pitrou commented on code in PR #12945:
URL: https://github.com/apache/arrow/pull/12945#discussion_r855221942
##########
dev/release/verify-release-candidate.sh:
##########
@@ -895,6 +895,8 @@ ensure_source_directory() {
fi
fi
+ # Ensure ARROW_SOURCE_DIR is a safe.directory for git
+ git config --global --add safe.directory $ARROW_SOURCE_DIR
Review Comment:
Hmm, this script can be run by developers on their local machine, can we run the `git config` only on CI configs? (for example in the parent script or yaml file)
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[GitHub] [arrow] raulcd commented on pull request #12945: ARROW-162219: [CI] Fix git config to prevent SCM tools failure
Posted by GitBox <gi...@apache.org>.
raulcd commented on PR #12945:
URL: https://github.com/apache/arrow/pull/12945#issuecomment-1105390110
@github-actions crossbow submit conda-verify-rc
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[GitHub] [arrow] kszucs closed pull request #12945: ARROW-16219: [CI] Fix git config to prevent SCM tools failure
Posted by GitBox <gi...@apache.org>.
kszucs closed pull request #12945: ARROW-16219: [CI] Fix git config to prevent SCM tools failure
URL: https://github.com/apache/arrow/pull/12945
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[GitHub] [arrow] kou commented on pull request #12945: ARROW-162219: [CI] Fix git config to prevent SCM tools failure
Posted by GitBox <gi...@apache.org>.
kou commented on PR #12945:
URL: https://github.com/apache/arrow/pull/12945#issuecomment-1105969897
Can we add `-c safe.directory=...` to `git` command lines in `cpp/cmake_modules/DefineOptions.cmake` and `python/setup.py` instead of adding `git config --global`?
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[GitHub] [arrow] pitrou commented on a diff in pull request #12945: ARROW-162219: [CI] Fix git config to prevent SCM tools failure
Posted by GitBox <gi...@apache.org>.
pitrou commented on code in PR #12945:
URL: https://github.com/apache/arrow/pull/12945#discussion_r855314257
##########
dev/release/verify-release-candidate.sh:
##########
@@ -895,6 +895,8 @@ ensure_source_directory() {
fi
fi
+ # Ensure ARROW_SOURCE_DIR is a safe.directory for git
+ git config --global --add safe.directory $ARROW_SOURCE_DIR
Review Comment:
Yes, that would be ok. It can even go into the Dockerfile(s) IMHO.
@kou @kszucs What do you think?
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[GitHub] [arrow] github-actions[bot] commented on pull request #12945: ARROW-162219: [CI] Fix git config to prevent SCM tools failure
Posted by GitBox <gi...@apache.org>.
github-actions[bot] commented on PR #12945:
URL: https://github.com/apache/arrow/pull/12945#issuecomment-1105624487
Revision: 6b965650ef67119e03e5086fcb2dc269ca020ec1
Submitted crossbow builds: [ursacomputing/crossbow @ actions-1898](https://github.com/ursacomputing/crossbow/branches/all?query=actions-1898)
|Task|Status|
|----|------|
|verify-rc-source-python-linux-conda-latest-amd64|[](https://github.com/ursacomputing/crossbow/actions?query=branch:actions-1898-github-verify-rc-source-python-linux-conda-latest-amd64)|
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[GitHub] [arrow] pitrou commented on pull request #12945: ARROW-16219: [CI] Fix git config to prevent SCM tools failure
Posted by GitBox <gi...@apache.org>.
pitrou commented on PR #12945:
URL: https://github.com/apache/arrow/pull/12945#issuecomment-1106116136
@kou Apparently one cannot use `-c safe.directory`: https://git-scm.com/docs/git-config/2.36.0#Documentation/git-config.txt-safedirectory
> This config setting is only respected when specified in a system or global config, not when it is specified in a repository config or via the command line option -c safe.directory=<path>.
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[GitHub] [arrow] raulcd commented on pull request #12945: ARROW-162219: [CI] Fix git config to prevent SCM tools failure
Posted by GitBox <gi...@apache.org>.
raulcd commented on PR #12945:
URL: https://github.com/apache/arrow/pull/12945#issuecomment-1105242009
@jorisvandenbossche @pitrou I've been able to validate on travis for `s390x Python` and locally for `conda-verify-rc` the fix as shown on the comments. We probably want to wait until the build passes but should be ready for review.
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[GitHub] [arrow] raulcd commented on pull request #12945: ARROW-16219: [CI] Fix git config to prevent SCM tools failure
Posted by GitBox <gi...@apache.org>.
raulcd commented on PR #12945:
URL: https://github.com/apache/arrow/pull/12945#issuecomment-1106641672
@kszucs was trying a different approach which seems better, closing this PR in favor of the other one (https://github.com/apache/arrow/pull/12958)
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[GitHub] [arrow] github-actions[bot] commented on pull request #12945: ARROW-162219: [CI] Fix git config to prevent SCM tools failure
Posted by GitBox <gi...@apache.org>.
github-actions[bot] commented on PR #12945:
URL: https://github.com/apache/arrow/pull/12945#issuecomment-1105378342
https://issues.apache.org/jira/browse/ARROW-162219
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[GitHub] [arrow] github-actions[bot] commented on pull request #12945: ARROW-16219: [CI] Fix git config to prevent SCM tools failure
Posted by GitBox <gi...@apache.org>.
github-actions[bot] commented on PR #12945:
URL: https://github.com/apache/arrow/pull/12945#issuecomment-1106063019
https://issues.apache.org/jira/browse/ARROW-16219
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[GitHub] [arrow] raulcd commented on a diff in pull request #12945: ARROW-162219: [CI] Fix git config to prevent SCM tools failure
Posted by GitBox <gi...@apache.org>.
raulcd commented on code in PR #12945:
URL: https://github.com/apache/arrow/pull/12945#discussion_r855248202
##########
dev/release/verify-release-candidate.sh:
##########
@@ -895,6 +895,8 @@ ensure_source_directory() {
fi
fi
+ # Ensure ARROW_SOURCE_DIR is a safe.directory for git
+ git config --global --add safe.directory $ARROW_SOURCE_DIR
Review Comment:
We can add it to the docker-compose.yml:
```
conda-verify-rc:
image: ubuntu:${UBUNTU}
volumes:
- .:/arrow:delegated
- ${DOCKER_VOLUME_PREFIX}conda-ccache:/ccache:delegated
shm_size: '1gb'
environment:
<<: *ccache
CMAKE_GENERATOR: Ninja
DEBIAN_FRONTEND: "noninteractive"
DOTNET_SYSTEM_GLOBALIZATION_INVARIANT: 1
TEST_APT: 0 # would require docker-in-docker
TEST_YUM: 0
USE_CONDA: 1
command: >
/bin/bash -c "
apt update -y && apt install -y curl git gnupg tzdata wget &&
git config --global --add safe.directory /arrow &&
/arrow/dev/release/verify-release-candidate.sh $${VERIFY_VERSION} $${VERIFY_RC}"
```
If we want to add it on the CI files only (not even `docker-compose.yml` we can modify the archery call `arrow/dev/tasks/verify-rc/github.linux.amd64.docker.yml` and add an environment variable to manage it:
```
- name: Execute Docker Build
shell: bash
run: |
archery docker run \
-e VERIFY_VERSION="{{ release|default("") }}" \
-e VERIFY_RC="{{ rc|default("") }}" \
-e TEST_DEFAULT=0 \
-e TEST_{{ target|upper }}=1 \
-e SET_GIT_SAFE_DIR=1 \
{{ distro }}-verify-rc
```
Would you be ok with modifying the docker-compose as shown above?
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[GitHub] [arrow] github-actions[bot] commented on pull request #12945: ARROW-162219: [CI] Fix git config to prevent SCM tools failure
Posted by GitBox <gi...@apache.org>.
github-actions[bot] commented on PR #12945:
URL: https://github.com/apache/arrow/pull/12945#issuecomment-1105606621
```
Unable to match any tasks for `conda-verify-rc`
The Archery job run can be found at: https://github.com/apache/arrow/actions/runs/2202830288```
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[GitHub] [arrow] pitrou commented on pull request #12945: ARROW-162219: [CI] Fix git config to prevent SCM tools failure
Posted by GitBox <gi...@apache.org>.
pitrou commented on PR #12945:
URL: https://github.com/apache/arrow/pull/12945#issuecomment-1106060292
One problem is that AFAICT a git command is implicitly issued by setuptools_scm.
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[GitHub] [arrow] raulcd commented on pull request #12945: ARROW-162219: [CI] Fix git config to prevent SCM tools failure
Posted by GitBox <gi...@apache.org>.
raulcd commented on PR #12945:
URL: https://github.com/apache/arrow/pull/12945#issuecomment-1105233544
Reproduced the issue and fixed on verify-release-candidate too:
```
$ docker-compose run conda-verify-rc
...
Executing transaction: done
/arrow/python /arrow /
running build_ext
-- Running cmake for pyarrow
cmake -DPYTHON_EXECUTABLE=/tmp/arrow-HEAD.fNS4t/mambaforge/envs/conda-source/bin/python -DPython3_EXECUTABLE=/tmp/arrow-HEAD.fNS4t/mambaforge/envs/conda-source/bin/python "" -DPYARROW_BUILD_CUDA=off -DPYARROW_BUILD_FLIGHT=on -DPYARROW_BUILD_GANDIVA=on -DPYARROW_BUILD_DATASET=on -DPYARROW_BUILD_ORC=on -DPYARROW_BUILD_PARQUET=on -DPYARROW_BUILD_PARQUET_ENCRYPTION=on -DPYARROW_BUILD_PLASMA=on -DPYARROW_BUILD_S3=off -DPYARROW_BUILD_HDFS=on -DPYARROW_USE_TENSORFLOW=off -DPYARROW_BUNDLE_ARROW_CPP=off -DPYARROW_BUNDLE_BOOST=off -DPYARROW_GENERATE_COVERAGE=off -DPYARROW_BOOST_USE_SHARED=on -DPYARROW_PARQUET_USE_SHARED=on -DCMAKE_BUILD_TYPE=release /arrow/python
CMake Warning:
Ignoring empty string ("") provided on the command line.
-- The C compiler identification is GNU 10.3.0
-- The CXX compiler identification is GNU 10.3.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /tmp/arrow-HEAD.fNS4t/mambaforge/envs/conda-source/bin/x86_64-conda-linux-gnu-cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /tmp/arrow-HEAD.fNS4t/mambaforge/envs/conda-source/bin/x86_64-conda-linux-gnu-c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- System processor: x86_64
-- Performing Test CXX_SUPPORTS_SSE4_2
-- Performing Test CXX_SUPPORTS_SSE4_2 - Success
-- Performing Test CXX_SUPPORTS_AVX2
-- Performing Test CXX_SUPPORTS_AVX2 - Success
-- Performing Test CXX_SUPPORTS_AVX512
-- Performing Test CXX_SUPPORTS_AVX512 - Success
-- Arrow build warning level: PRODUCTION
Using ld linker
```
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[GitHub] [arrow] raulcd commented on pull request #12945: ARROW-16219: [CI] Fix git config to prevent SCM tools failure
Posted by GitBox <gi...@apache.org>.
raulcd commented on PR #12945:
URL: https://github.com/apache/arrow/pull/12945#issuecomment-1106180643
About the build failures, I am going to fix the Windows ones which are introduced by this PR https://github.com/apache/arrow/runs/6114986154?check_suite_focus=true:
```
Run export CMAKE_BUILD_PARALLEL_LEVEL=$NUMBER_OF_PROCESSORS
+ source_dir=/d/a/arrow/arrow/cpp
+ build_dir=/d/a/arrow/arrow/build/cpp
+ : ON
+ : OFF
+ git config --global --add safe.directory /d/a/arrow/arrow
ci/scripts/cpp_build.sh: line 28: git: command not found
```
The MacOS ones are related to homebrew installing git https://github.com/apache/arrow/runs/6114984587?check_suite_focus=true:
```
Error: Could not symlink share/doc/git-doc/MyFirstContribution.html
Target /usr/local/share/doc/git-doc/MyFirstContribution.html
is a symlink belonging to git@2.35.1. You can unlink it:
brew unlink git@2.35.1
To force the link and overwrite all conflicting files:
brew link --overwrite git@2.35.1
To list all files that would be deleted:
brew link --overwrite --dry-run git@2.35.1
Installing git has failed!
```
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[GitHub] [arrow] raulcd commented on pull request #12945: ARROW-16219: [CI] Fix git config to prevent SCM tools failure
Posted by GitBox <gi...@apache.org>.
raulcd commented on PR #12945:
URL: https://github.com/apache/arrow/pull/12945#issuecomment-1106368775
@kou this PR fixes all the git failures I've found so far except the brew installation that I've captured on a different ticket (https://issues.apache.org/jira/browse/ARROW-16278) and have started working on a different PR https://github.com/apache/arrow/pull/12956 . Let me know if you think we should do other changes or if I should incorporate the brew fixes here (I am still working on understanding how to fix them).
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[GitHub] [arrow] raulcd commented on pull request #12945: ARROW-16219: [CI] Fix git config to prevent SCM tools failure
Posted by GitBox <gi...@apache.org>.
raulcd commented on PR #12945:
URL: https://github.com/apache/arrow/pull/12945#issuecomment-1106642200
Sorry, this was not the PR to close
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[GitHub] [arrow] raulcd commented on pull request #12945: ARROW-162219: [CI] Fix git config to prevent SCM tools failure
Posted by GitBox <gi...@apache.org>.
raulcd commented on PR #12945:
URL: https://github.com/apache/arrow/pull/12945#issuecomment-1105397144
@github-actions crossbow submit verify-rc-source-python-linux-conda-latest-amd64
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[GitHub] [arrow] kou commented on pull request #12945: ARROW-16219: [CI] Fix git config to prevent SCM tools failure
Posted by GitBox <gi...@apache.org>.
kou commented on PR #12945:
URL: https://github.com/apache/arrow/pull/12945#issuecomment-1106120179
> @kou Apparently one cannot use `-c safe.directory`: https://git-scm.com/docs/git-config/2.36.0#Documentation/git-config.txt-safedirectory
>
> > This config setting is only respected when specified in a system or global config, not when it is specified in a repository config or via the command line option -c safe.directory=.
Oh, sorry. I missed this.
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[GitHub] [arrow] ursabot commented on pull request #12945: ARROW-16219: [CI] Fix git config to prevent SCM tools failure
Posted by GitBox <gi...@apache.org>.
ursabot commented on PR #12945:
URL: https://github.com/apache/arrow/pull/12945#issuecomment-1109341191
Benchmark runs are scheduled for baseline = ec9440af6cb8af498e11f5347cf5608172344f16 and contender = c16bbe18e3611a5bc682ea7a84ee0bff06ec3187. c16bbe18e3611a5bc682ea7a84ee0bff06ec3187 is a master commit associated with this PR. Results will be available as each benchmark for each run completes.
Conbench compare runs links:
[Finished :arrow_down:0.0% :arrow_up:0.0%] [ec2-t3-xlarge-us-east-2](https://conbench.ursa.dev/compare/runs/a3e0266849f24b7bb3cb93c88862016b...b1499247974c4dcea39fa8ea8802faa4/)
[Failed] [test-mac-arm](https://conbench.ursa.dev/compare/runs/f116e046fcf0469da768b091e15cdb97...7aee41f19d03436093d023e5f4817961/)
[Failed :arrow_down:0.0% :arrow_up:0.0%] [ursa-i9-9960x](https://conbench.ursa.dev/compare/runs/cbdbee2837464efeac30f85e15ac4a8c...a82adb531b4a48e09e017c0041125cb5/)
[Finished :arrow_down:0.55% :arrow_up:0.04%] [ursa-thinkcentre-m75q](https://conbench.ursa.dev/compare/runs/94602827bc964e959afc51e28419962f...8ae6548bfeb5411fb50ed480707a9627/)
Buildkite builds:
[Finished] <https://buildkite.com/apache-arrow/arrow-bci-benchmark-on-ec2-t3-xlarge-us-east-2/builds/590| `c16bbe18` ec2-t3-xlarge-us-east-2>
[Failed] <https://buildkite.com/apache-arrow/arrow-bci-benchmark-on-test-mac-arm/builds/578| `c16bbe18` test-mac-arm>
[Failed] <https://buildkite.com/apache-arrow/arrow-bci-benchmark-on-ursa-i9-9960x/builds/576| `c16bbe18` ursa-i9-9960x>
[Finished] <https://buildkite.com/apache-arrow/arrow-bci-benchmark-on-ursa-thinkcentre-m75q/builds/588| `c16bbe18` ursa-thinkcentre-m75q>
[Finished] <https://buildkite.com/apache-arrow/arrow-bci-benchmark-on-ec2-t3-xlarge-us-east-2/builds/589| `ec9440af` ec2-t3-xlarge-us-east-2>
[Failed] <https://buildkite.com/apache-arrow/arrow-bci-benchmark-on-test-mac-arm/builds/577| `ec9440af` test-mac-arm>
[Failed] <https://buildkite.com/apache-arrow/arrow-bci-benchmark-on-ursa-i9-9960x/builds/575| `ec9440af` ursa-i9-9960x>
[Finished] <https://buildkite.com/apache-arrow/arrow-bci-benchmark-on-ursa-thinkcentre-m75q/builds/587| `ec9440af` ursa-thinkcentre-m75q>
Supported benchmarks:
ec2-t3-xlarge-us-east-2: Supported benchmark langs: Python, R. Runs only benchmarks with cloud = True
test-mac-arm: Supported benchmark langs: C++, Python, R
ursa-i9-9960x: Supported benchmark langs: Python, R, JavaScript
ursa-thinkcentre-m75q: Supported benchmark langs: C++, Java
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[GitHub] [arrow] raulcd closed pull request #12945: ARROW-16219: [CI] Fix git config to prevent SCM tools failure
Posted by GitBox <gi...@apache.org>.
raulcd closed pull request #12945: ARROW-16219: [CI] Fix git config to prevent SCM tools failure
URL: https://github.com/apache/arrow/pull/12945
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[GitHub] [arrow] raulcd commented on pull request #12945: ARROW-162219: [CI] Fix git config to prevent SCM tools failure
Posted by GitBox <gi...@apache.org>.
raulcd commented on PR #12945:
URL: https://github.com/apache/arrow/pull/12945#issuecomment-1105197539
We can see on the new build how the `ARROW_GIT_ID` variable is correctly populated now too:
```
-- ARROW_GIT_ID=f94a14ddd3a5271a3779b831da482dfe212d57a7 [default=""]
-- The Arrow git commit id (if any)
```
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