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Posted to dev@stanbol.apache.org by Nathan Breit <br...@ecohealthalliance.org> on 2016/05/31 16:13:44 UTC
Need Help Configuring EntityhubLinkingEngine
Hello,
I am trying to configure the Entityhub linking engine to use an Entityhub
site with vocabulary from the Disease Ontology (http://disease-ontology.org/),
but when I enhance text with it, labels from the ontology are not being
annotated in the text. I am looking for advice on how to debug this. Here
is what I've tried so far:
- I used the genericrdf indexing tool to import the Disease Ontology into a
new Entityhub site. When I used the entityhub /find API endpoint to search
for the name "dengue hemorrhagic fever" a result from the Disease Ontology
was returned.
- I configured and built a EntityhubLinkingEngine and a WeightedChain
containing the linking engine. They show up on the Stanbol admin site and
felix console. These are the config files:
https://github.com/ecohealthalliance/t11/tree/master/ansible/roles/stanbol/templates/enhancer
- When I used the following API call to enhance text containing the same
term I was able to find using the /find endpoint, the language detected is
the only annotation returned.
curl -X POST -H "Accept: appltion/json" -H "Content-type: text/plain"
--data "Avoid dengue hemorrhagic fever."
http://54.197.175.163:3000/enhancer/chain/doidEnhancerChain
This appears in the Stanbol error.log when the enhancement runs:
```
31.05.2016 12:05:06.204 *INFO* [Thread-5]
org.apache.stanbol.enhancer.engines.langid.LangIdEnhancementEngine language
identified as no
31.05.2016 12:05:06.206 *INFO* [Thread-5]
org.apache.stanbol.enhancer.engines.opennlp.impl.NamedEntityExtractionEnhancementEngine
No NER Model for person and language no available!
31.05.2016 12:05:06.206 *INFO* [Thread-5]
org.apache.stanbol.enhancer.engines.opennlp.impl.NamedEntityExtractionEnhancementEngine
No NER Model for organization and language no available!
31.05.2016 12:05:06.207 *INFO* [Thread-5]
org.apache.stanbol.enhancer.engines.opennlp.impl.NamedEntityExtractionEnhancementEngine
No NER Model for location and language no available!
31.05.2016 12:05:06.210 *INFO* [Thread-5]
org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine
EntityLinking Statistics:
31.05.2016 12:05:06.210 *INFO* [Thread-5]
org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine
- overal: 2ms (text processing: 4%, lookup: 127%, matching 0%, ranking
0%, other -31%)
31.05.2016 12:05:06.210 *INFO* [Thread-5]
org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine
- Text Processing: 0.071543ms [count: 4 | time: 0.01788575ms
(max:0.051031, min:0.005928)]
31.05.2016 12:05:06.211 *INFO* [Thread-5]
org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine
- Vocabulary Lookup: 2.541598ms [count: 3 | time: 0.8471993333333333ms
(max:1.190281, min:0.667284)]
31.05.2016 12:05:06.211 *INFO* [Thread-5]
org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine
- cache hits: 1 (33.333332%)
31.05.2016 12:05:06.211 *INFO* [Thread-5]
org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine
- 0 query results (0 filtered - NaN%)
31.05.2016 12:05:06.211 *INFO* [Thread-5]
org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine
- Label Matching: 0.00218ms [count: 3 | time: 7.266666666666667E-4ms
(max:7.55E-4, min:7.04E-4)]
31.05.2016 12:05:06.211 *INFO* [Thread-5]
org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine
- Suggestion Ranking: 0.0ms [count: 0 | time: NaNms (max:-1.0E-6,
min:9.223372036854775E12)]
31.05.2016 12:05:06.214 *INFO* [qtp1118916813-38]
org.apache.stanbol.enhancer.jobmanager.event.impl.EventJobManagerImpl
Execution of Chain doidEnhancerChain finished after 14ms for ContentItem
<urn:content-item-sha1-d2851c0b02e12cc3b42bb6608fa2e1d50c43b17f>
31.05.2016 12:05:06.215 *INFO* [qtp1118916813-38]
org.apache.stanbol.enhancer.servicesapi.EnhancementJobManager > processed
ContentItem
<urn:content-item-sha1-d2851c0b02e12cc3b42bb6608fa2e1d50c43b17f> with Chain
'doidEnhancerChain' in 14ms | chain:[tika: 1ms (7%), langid: 3ms (21%),
opennlp-sentence: 0ms (0%), opennlp-token: 0ms (0%), opennlp-pos: 1ms (7%),
opennlp-ner: 1ms (7%), entityhubExtraction: 4ms (29%), doidEnhancer: 7ms
(50%), dbpediaLinking: 0ms (0%)], concurrency: 1.0 (0%)
```
The Ansible playbook here performs all the steps I am been using to set up
Stanbol: https://github.com/ecohealthalliance/t11/tree/master/ansible
Thanks,
-Nathan Breit
--
Nathan Breit
Software Developer
EcoHealth Alliance
460 West 34th Street – 17th floor
New York, NY 10001
My Skype: nathanathan3 <http://is.gd/OyRVnD>
My Phone Number: 1-425-296-1123
www.ecohealthalliance.org
EcoHealth Alliance leads cutting-edge research into the critical
connections between human and wildlife health and delicate ecosystems. With
this science we develop solutions that promote conservation and prevent
pandemics.
Re: Need Help Configuring EntityhubLinkingEngine
Posted by Nathan Breit <br...@ecohealthalliance.org>.
The entities' labels are in English but they don't have a language
attribute. If that is required, is there a way I can specify a mapping that
will give all the labels an @en attribute? I tried adding "rdfs:label >
rdfs:label@en" to the generic rdf reader's mappings.txt to no avail.
Thanks,
-Nathan
On Thu, Jun 2, 2016 at 7:07 AM, Rafa Haro <rh...@apache.org> wrote:
> Hi Nathan, can you check entities' labels language in your dataset?
>
> Cheers,
> Rafa
> El El mié, 1 jun 2016 a las 19:30, Nathan Breit <
> breit@ecohealthalliance.org>
> escribió:
>
> > Thanks for your assistance Rafa. Unfortunately, I'm still stuck. I used
> the
> > following longer test string that was detected as en, "This is really
> > English text and dengue hemorrhagic fever is a disease." However, there
> > were still no entity annotations returned. This was printed in my
> > error.log:
> > ```
> > 01.06.2016 13:14:40.641 *INFO* [Thread-7]
> > org.apache.stanbol.enhancer.engines.langid.LangIdEnhancementEngine
> language
> > identified as en
> > 01.06.2016 13:14:40.670 *INFO* [Thread-5]
> >
> >
> org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine
> > EntityLinking Statistics:
> > 01.06.2016 13:14:40.670 *INFO* [Thread-5]
> >
> >
> org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine
> > - overal: 7ms (text processing: 6%, lookup: 91%, matching 0%, ranking
> > 0%, other 3%)
> > 01.06.2016 13:14:40.670 *INFO* [Thread-5]
> >
> >
> org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine
> > - Text Processing: 0.399572ms [count: 5 | time: 0.0799144ms
> > (max:0.366414, min:0.007158)]
> > 01.06.2016 13:14:40.670 *INFO* [Thread-5]
> >
> >
> org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine
> > - Vocabulary Lookup: 6.356819ms [count: 4 | time: 1.58920475ms
> > (max:2.560572, min:0.893326)]
> > 01.06.2016 13:14:40.670 *INFO* [Thread-5]
> >
> >
> org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine
> > - cache hits: 1 (25.0%)
> > 01.06.2016 13:14:40.670 *INFO* [Thread-5]
> >
> >
> org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine
> > - 0 query results (0 filtered - NaN%)
> > 01.06.2016 13:14:40.670 *INFO* [Thread-5]
> >
> >
> org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine
> > - Label Matching: 0.003802ms [count: 4 | time: 9.505E-4ms
> (max:0.001065,
> > min:8.85E-4)]
> > 01.06.2016 13:14:40.670 *INFO* [Thread-5]
> >
> >
> org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine
> > - Suggestion Ranking: 0.0ms [count: 0 | time: NaNms (max:-1.0E-6,
> > min:9.223372036854775E12)]
> > 01.06.2016 13:14:40.671 *INFO* [qtp621234008-38]
> > org.apache.stanbol.enhancer.jobmanager.event.impl.EventJobManagerImpl
> > Execution of Chain doidEnhancerChain finished after 36ms for ContentItem
> > <urn:content-item-sha1-f506f062502e1c37eddbc5777073a1239cba0c4e>
> > 01.06.2016 13:14:40.672 *INFO* [qtp621234008-38]
> > org.apache.stanbol.enhancer.servicesapi.EnhancementJobManager > processed
> > ContentItem
> > <urn:content-item-sha1-f506f062502e1c37eddbc5777073a1239cba0c4e> with
> Chain
> > 'doidEnhancerChain' in 34ms | chain:[langid: 6ms (18%), tika: 0ms (0%),
> > opennlp-sentence: 1ms (3%), opennlp-token: 0ms (0%), opennlp-pos: 3ms
> (9%),
> > opennlp-ner: 5ms (15%), dbpediaLinking: 1ms (3%), entityhubExtraction:
> 18ms
> > (53%), doidEnhancer: 9ms (26%)], concurrency: 1.0 (0%)
> > ```
> > I'm not sure what to make of NER mentions in the logs. My enhancement
> chain
> > does not include a NER, unless it is being invoked by another enhancer
> like
> > opennlp-pos.
> > Regards,
> > -Nathan
> >
> > On Wed, Jun 1, 2016 at 5:32 PM, Rafa Haro <rh...@apache.org> wrote:
> >
> > > Hi Nathan,
> > >
> > > You are testing the enhancer with a very short sentence and the
> Language
> > > Detection engine is identifying 'no' (probable Norwegian) as the
> sentence
> > > language. By default, Stanbol uses the identified language code for
> both
> > > loading OpenNLP models in that language and for entity lookup for
> > searching
> > > only entity labels in that language. There is a couple of things you
> can
> > do
> > > for avoiding an empty annotation is these situations:
> > >
> > > 1. Force the language code as a header in your request (curl request in
> > > this case)
> > > 2. Configure English 'en' or whatever language you know your dataset
> has
> > > labels for the entities as Default Matching Language which is missing
> in
> > > your configuration. More information here:
> > >
> > >
> >
> https://stanbol.apache.org/docs/trunk/components/enhancer/engines/entitylinking
> > >
> > > Also, you also would probably like to disable NER engines for such kind
> > of
> > > entities.
> > >
> > > Hope that helps,
> > > Rafa
> > >
> > > On Tue, May 31, 2016 at 6:13 PM Nathan Breit <
> > breit@ecohealthalliance.org>
> > > wrote:
> > >
> > > > Hello,
> > > > I am trying to configure the Entityhub linking engine to use an
> > Entityhub
> > > > site with vocabulary from the Disease Ontology (
> > > > http://disease-ontology.org/),
> > > > but when I enhance text with it, labels from the ontology are not
> being
> > > > annotated in the text. I am looking for advice on how to debug this.
> > Here
> > > > is what I've tried so far:
> > > > - I used the genericrdf indexing tool to import the Disease Ontology
> > > into a
> > > > new Entityhub site. When I used the entityhub /find API endpoint to
> > > search
> > > > for the name "dengue hemorrhagic fever" a result from the Disease
> > > Ontology
> > > > was returned.
> > > > - I configured and built a EntityhubLinkingEngine and a WeightedChain
> > > > containing the linking engine. They show up on the Stanbol admin site
> > and
> > > > felix console. These are the config files:
> > > >
> > > >
> > >
> >
> https://github.com/ecohealthalliance/t11/tree/master/ansible/roles/stanbol/templates/enhancer
> > > > - When I used the following API call to enhance text containing the
> > same
> > > > term I was able to find using the /find endpoint, the language
> detected
> > > is
> > > > the only annotation returned.
> > > >
> > > > curl -X POST -H "Accept: appltion/json" -H "Content-type: text/plain"
> > > > --data "Avoid dengue hemorrhagic fever."
> > > > http://54.197.175.163:3000/enhancer/chain/doidEnhancerChain
> > > >
> > > > This appears in the Stanbol error.log when the enhancement runs:
> > > >
> > > > ```
> > > > 31.05.2016 12:05:06.204 *INFO* [Thread-5]
> > > > org.apache.stanbol.enhancer.engines.langid.LangIdEnhancementEngine
> > > language
> > > > identified as no
> > > > 31.05.2016 12:05:06.206 *INFO* [Thread-5]
> > > >
> > > >
> > >
> >
> org.apache.stanbol.enhancer.engines.opennlp.impl.NamedEntityExtractionEnhancementEngine
> > > > No NER Model for person and language no available!
> > > > 31.05.2016 12:05:06.206 *INFO* [Thread-5]
> > > >
> > > >
> > >
> >
> org.apache.stanbol.enhancer.engines.opennlp.impl.NamedEntityExtractionEnhancementEngine
> > > > No NER Model for organization and language no available!
> > > > 31.05.2016 12:05:06.207 *INFO* [Thread-5]
> > > >
> > > >
> > >
> >
> org.apache.stanbol.enhancer.engines.opennlp.impl.NamedEntityExtractionEnhancementEngine
> > > > No NER Model for location and language no available!
> > > > 31.05.2016 12:05:06.210 *INFO* [Thread-5]
> > > >
> > > >
> > >
> >
> org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine
> > > > EntityLinking Statistics:
> > > > 31.05.2016 12:05:06.210 *INFO* [Thread-5]
> > > >
> > > >
> > >
> >
> org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine
> > > > - overal: 2ms (text processing: 4%, lookup: 127%, matching 0%,
> > > ranking
> > > > 0%, other -31%)
> > > > 31.05.2016 12:05:06.210 *INFO* [Thread-5]
> > > >
> > > >
> > >
> >
> org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine
> > > > - Text Processing: 0.071543ms [count: 4 | time: 0.01788575ms
> > > > (max:0.051031, min:0.005928)]
> > > > 31.05.2016 12:05:06.211 *INFO* [Thread-5]
> > > >
> > > >
> > >
> >
> org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine
> > > > - Vocabulary Lookup: 2.541598ms [count: 3 | time:
> > 0.8471993333333333ms
> > > > (max:1.190281, min:0.667284)]
> > > > 31.05.2016 12:05:06.211 *INFO* [Thread-5]
> > > >
> > > >
> > >
> >
> org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine
> > > > - cache hits: 1 (33.333332%)
> > > > 31.05.2016 12:05:06.211 *INFO* [Thread-5]
> > > >
> > > >
> > >
> >
> org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine
> > > > - 0 query results (0 filtered - NaN%)
> > > > 31.05.2016 12:05:06.211 *INFO* [Thread-5]
> > > >
> > > >
> > >
> >
> org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine
> > > > - Label Matching: 0.00218ms [count: 3 | time:
> 7.266666666666667E-4ms
> > > > (max:7.55E-4, min:7.04E-4)]
> > > > 31.05.2016 12:05:06.211 *INFO* [Thread-5]
> > > >
> > > >
> > >
> >
> org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine
> > > > - Suggestion Ranking: 0.0ms [count: 0 | time: NaNms (max:-1.0E-6,
> > > > min:9.223372036854775E12)]
> > > > 31.05.2016 12:05:06.214 *INFO* [qtp1118916813-38]
> > > > org.apache.stanbol.enhancer.jobmanager.event.impl.EventJobManagerImpl
> > > > Execution of Chain doidEnhancerChain finished after 14ms for
> > ContentItem
> > > > <urn:content-item-sha1-d2851c0b02e12cc3b42bb6608fa2e1d50c43b17f>
> > > > 31.05.2016 12:05:06.215 *INFO* [qtp1118916813-38]
> > > > org.apache.stanbol.enhancer.servicesapi.EnhancementJobManager >
> > processed
> > > > ContentItem
> > > > <urn:content-item-sha1-d2851c0b02e12cc3b42bb6608fa2e1d50c43b17f> with
> > > Chain
> > > > 'doidEnhancerChain' in 14ms | chain:[tika: 1ms (7%), langid: 3ms
> (21%),
> > > > opennlp-sentence: 0ms (0%), opennlp-token: 0ms (0%), opennlp-pos: 1ms
> > > (7%),
> > > > opennlp-ner: 1ms (7%), entityhubExtraction: 4ms (29%), doidEnhancer:
> > 7ms
> > > > (50%), dbpediaLinking: 0ms (0%)], concurrency: 1.0 (0%)
> > > > ```
> > > >
> > > > The Ansible playbook here performs all the steps I am been using to
> set
> > > up
> > > > Stanbol:
> https://github.com/ecohealthalliance/t11/tree/master/ansible
> > > >
> > > > Thanks,
> > > > -Nathan Breit
> > > >
> > > > --
> > > >
> > > > Nathan Breit
> > > >
> > > > Software Developer
> > > >
> > > > EcoHealth Alliance
> > > >
> > > > 460 West 34th Street – 17th floor
> > > >
> > > > New York, NY 10001
> > > >
> > > > My Skype: nathanathan3 <http://is.gd/OyRVnD>
> > > >
> > > > My Phone Number: 1-425-296-1123
> > > >
> > > > www.ecohealthalliance.org
> > > >
> > > > EcoHealth Alliance leads cutting-edge research into the critical
> > > > connections between human and wildlife health and delicate
> ecosystems.
> > > With
> > > > this science we develop solutions that promote conservation and
> prevent
> > > > pandemics.
> > > >
> > >
> >
> >
> >
> > --
> >
> > Nathan Breit
> >
> > Software Developer
> >
> > EcoHealth Alliance
> >
> > 460 West 34th Street – 17th floor
> >
> > New York, NY 10001
> >
> > My Skype: nathanathan3 <http://is.gd/OyRVnD>
> >
> > My Phone Number: 1-425-296-1123
> >
> > www.ecohealthalliance.org
> >
> > EcoHealth Alliance leads cutting-edge research into the critical
> > connections between human and wildlife health and delicate ecosystems.
> With
> > this science we develop solutions that promote conservation and prevent
> > pandemics.
> >
>
--
Nathan Breit
Software Developer
EcoHealth Alliance
460 West 34th Street – 17th floor
New York, NY 10001
My Skype: nathanathan3 <http://is.gd/OyRVnD>
My Phone Number: 1-425-296-1123
www.ecohealthalliance.org
EcoHealth Alliance leads cutting-edge research into the critical
connections between human and wildlife health and delicate ecosystems. With
this science we develop solutions that promote conservation and prevent
pandemics.
Re: Need Help Configuring EntityhubLinkingEngine
Posted by Rafa Haro <rh...@apache.org>.
Hi Nathan, can you check entities' labels language in your dataset?
Cheers,
Rafa
El El mié, 1 jun 2016 a las 19:30, Nathan Breit <br...@ecohealthalliance.org>
escribió:
> Thanks for your assistance Rafa. Unfortunately, I'm still stuck. I used the
> following longer test string that was detected as en, "This is really
> English text and dengue hemorrhagic fever is a disease." However, there
> were still no entity annotations returned. This was printed in my
> error.log:
> ```
> 01.06.2016 13:14:40.641 *INFO* [Thread-7]
> org.apache.stanbol.enhancer.engines.langid.LangIdEnhancementEngine language
> identified as en
> 01.06.2016 13:14:40.670 *INFO* [Thread-5]
>
> org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine
> EntityLinking Statistics:
> 01.06.2016 13:14:40.670 *INFO* [Thread-5]
>
> org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine
> - overal: 7ms (text processing: 6%, lookup: 91%, matching 0%, ranking
> 0%, other 3%)
> 01.06.2016 13:14:40.670 *INFO* [Thread-5]
>
> org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine
> - Text Processing: 0.399572ms [count: 5 | time: 0.0799144ms
> (max:0.366414, min:0.007158)]
> 01.06.2016 13:14:40.670 *INFO* [Thread-5]
>
> org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine
> - Vocabulary Lookup: 6.356819ms [count: 4 | time: 1.58920475ms
> (max:2.560572, min:0.893326)]
> 01.06.2016 13:14:40.670 *INFO* [Thread-5]
>
> org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine
> - cache hits: 1 (25.0%)
> 01.06.2016 13:14:40.670 *INFO* [Thread-5]
>
> org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine
> - 0 query results (0 filtered - NaN%)
> 01.06.2016 13:14:40.670 *INFO* [Thread-5]
>
> org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine
> - Label Matching: 0.003802ms [count: 4 | time: 9.505E-4ms (max:0.001065,
> min:8.85E-4)]
> 01.06.2016 13:14:40.670 *INFO* [Thread-5]
>
> org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine
> - Suggestion Ranking: 0.0ms [count: 0 | time: NaNms (max:-1.0E-6,
> min:9.223372036854775E12)]
> 01.06.2016 13:14:40.671 *INFO* [qtp621234008-38]
> org.apache.stanbol.enhancer.jobmanager.event.impl.EventJobManagerImpl
> Execution of Chain doidEnhancerChain finished after 36ms for ContentItem
> <urn:content-item-sha1-f506f062502e1c37eddbc5777073a1239cba0c4e>
> 01.06.2016 13:14:40.672 *INFO* [qtp621234008-38]
> org.apache.stanbol.enhancer.servicesapi.EnhancementJobManager > processed
> ContentItem
> <urn:content-item-sha1-f506f062502e1c37eddbc5777073a1239cba0c4e> with Chain
> 'doidEnhancerChain' in 34ms | chain:[langid: 6ms (18%), tika: 0ms (0%),
> opennlp-sentence: 1ms (3%), opennlp-token: 0ms (0%), opennlp-pos: 3ms (9%),
> opennlp-ner: 5ms (15%), dbpediaLinking: 1ms (3%), entityhubExtraction: 18ms
> (53%), doidEnhancer: 9ms (26%)], concurrency: 1.0 (0%)
> ```
> I'm not sure what to make of NER mentions in the logs. My enhancement chain
> does not include a NER, unless it is being invoked by another enhancer like
> opennlp-pos.
> Regards,
> -Nathan
>
> On Wed, Jun 1, 2016 at 5:32 PM, Rafa Haro <rh...@apache.org> wrote:
>
> > Hi Nathan,
> >
> > You are testing the enhancer with a very short sentence and the Language
> > Detection engine is identifying 'no' (probable Norwegian) as the sentence
> > language. By default, Stanbol uses the identified language code for both
> > loading OpenNLP models in that language and for entity lookup for
> searching
> > only entity labels in that language. There is a couple of things you can
> do
> > for avoiding an empty annotation is these situations:
> >
> > 1. Force the language code as a header in your request (curl request in
> > this case)
> > 2. Configure English 'en' or whatever language you know your dataset has
> > labels for the entities as Default Matching Language which is missing in
> > your configuration. More information here:
> >
> >
> https://stanbol.apache.org/docs/trunk/components/enhancer/engines/entitylinking
> >
> > Also, you also would probably like to disable NER engines for such kind
> of
> > entities.
> >
> > Hope that helps,
> > Rafa
> >
> > On Tue, May 31, 2016 at 6:13 PM Nathan Breit <
> breit@ecohealthalliance.org>
> > wrote:
> >
> > > Hello,
> > > I am trying to configure the Entityhub linking engine to use an
> Entityhub
> > > site with vocabulary from the Disease Ontology (
> > > http://disease-ontology.org/),
> > > but when I enhance text with it, labels from the ontology are not being
> > > annotated in the text. I am looking for advice on how to debug this.
> Here
> > > is what I've tried so far:
> > > - I used the genericrdf indexing tool to import the Disease Ontology
> > into a
> > > new Entityhub site. When I used the entityhub /find API endpoint to
> > search
> > > for the name "dengue hemorrhagic fever" a result from the Disease
> > Ontology
> > > was returned.
> > > - I configured and built a EntityhubLinkingEngine and a WeightedChain
> > > containing the linking engine. They show up on the Stanbol admin site
> and
> > > felix console. These are the config files:
> > >
> > >
> >
> https://github.com/ecohealthalliance/t11/tree/master/ansible/roles/stanbol/templates/enhancer
> > > - When I used the following API call to enhance text containing the
> same
> > > term I was able to find using the /find endpoint, the language detected
> > is
> > > the only annotation returned.
> > >
> > > curl -X POST -H "Accept: appltion/json" -H "Content-type: text/plain"
> > > --data "Avoid dengue hemorrhagic fever."
> > > http://54.197.175.163:3000/enhancer/chain/doidEnhancerChain
> > >
> > > This appears in the Stanbol error.log when the enhancement runs:
> > >
> > > ```
> > > 31.05.2016 12:05:06.204 *INFO* [Thread-5]
> > > org.apache.stanbol.enhancer.engines.langid.LangIdEnhancementEngine
> > language
> > > identified as no
> > > 31.05.2016 12:05:06.206 *INFO* [Thread-5]
> > >
> > >
> >
> org.apache.stanbol.enhancer.engines.opennlp.impl.NamedEntityExtractionEnhancementEngine
> > > No NER Model for person and language no available!
> > > 31.05.2016 12:05:06.206 *INFO* [Thread-5]
> > >
> > >
> >
> org.apache.stanbol.enhancer.engines.opennlp.impl.NamedEntityExtractionEnhancementEngine
> > > No NER Model for organization and language no available!
> > > 31.05.2016 12:05:06.207 *INFO* [Thread-5]
> > >
> > >
> >
> org.apache.stanbol.enhancer.engines.opennlp.impl.NamedEntityExtractionEnhancementEngine
> > > No NER Model for location and language no available!
> > > 31.05.2016 12:05:06.210 *INFO* [Thread-5]
> > >
> > >
> >
> org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine
> > > EntityLinking Statistics:
> > > 31.05.2016 12:05:06.210 *INFO* [Thread-5]
> > >
> > >
> >
> org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine
> > > - overal: 2ms (text processing: 4%, lookup: 127%, matching 0%,
> > ranking
> > > 0%, other -31%)
> > > 31.05.2016 12:05:06.210 *INFO* [Thread-5]
> > >
> > >
> >
> org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine
> > > - Text Processing: 0.071543ms [count: 4 | time: 0.01788575ms
> > > (max:0.051031, min:0.005928)]
> > > 31.05.2016 12:05:06.211 *INFO* [Thread-5]
> > >
> > >
> >
> org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine
> > > - Vocabulary Lookup: 2.541598ms [count: 3 | time:
> 0.8471993333333333ms
> > > (max:1.190281, min:0.667284)]
> > > 31.05.2016 12:05:06.211 *INFO* [Thread-5]
> > >
> > >
> >
> org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine
> > > - cache hits: 1 (33.333332%)
> > > 31.05.2016 12:05:06.211 *INFO* [Thread-5]
> > >
> > >
> >
> org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine
> > > - 0 query results (0 filtered - NaN%)
> > > 31.05.2016 12:05:06.211 *INFO* [Thread-5]
> > >
> > >
> >
> org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine
> > > - Label Matching: 0.00218ms [count: 3 | time: 7.266666666666667E-4ms
> > > (max:7.55E-4, min:7.04E-4)]
> > > 31.05.2016 12:05:06.211 *INFO* [Thread-5]
> > >
> > >
> >
> org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine
> > > - Suggestion Ranking: 0.0ms [count: 0 | time: NaNms (max:-1.0E-6,
> > > min:9.223372036854775E12)]
> > > 31.05.2016 12:05:06.214 *INFO* [qtp1118916813-38]
> > > org.apache.stanbol.enhancer.jobmanager.event.impl.EventJobManagerImpl
> > > Execution of Chain doidEnhancerChain finished after 14ms for
> ContentItem
> > > <urn:content-item-sha1-d2851c0b02e12cc3b42bb6608fa2e1d50c43b17f>
> > > 31.05.2016 12:05:06.215 *INFO* [qtp1118916813-38]
> > > org.apache.stanbol.enhancer.servicesapi.EnhancementJobManager >
> processed
> > > ContentItem
> > > <urn:content-item-sha1-d2851c0b02e12cc3b42bb6608fa2e1d50c43b17f> with
> > Chain
> > > 'doidEnhancerChain' in 14ms | chain:[tika: 1ms (7%), langid: 3ms (21%),
> > > opennlp-sentence: 0ms (0%), opennlp-token: 0ms (0%), opennlp-pos: 1ms
> > (7%),
> > > opennlp-ner: 1ms (7%), entityhubExtraction: 4ms (29%), doidEnhancer:
> 7ms
> > > (50%), dbpediaLinking: 0ms (0%)], concurrency: 1.0 (0%)
> > > ```
> > >
> > > The Ansible playbook here performs all the steps I am been using to set
> > up
> > > Stanbol: https://github.com/ecohealthalliance/t11/tree/master/ansible
> > >
> > > Thanks,
> > > -Nathan Breit
> > >
> > > --
> > >
> > > Nathan Breit
> > >
> > > Software Developer
> > >
> > > EcoHealth Alliance
> > >
> > > 460 West 34th Street – 17th floor
> > >
> > > New York, NY 10001
> > >
> > > My Skype: nathanathan3 <http://is.gd/OyRVnD>
> > >
> > > My Phone Number: 1-425-296-1123
> > >
> > > www.ecohealthalliance.org
> > >
> > > EcoHealth Alliance leads cutting-edge research into the critical
> > > connections between human and wildlife health and delicate ecosystems.
> > With
> > > this science we develop solutions that promote conservation and prevent
> > > pandemics.
> > >
> >
>
>
>
> --
>
> Nathan Breit
>
> Software Developer
>
> EcoHealth Alliance
>
> 460 West 34th Street – 17th floor
>
> New York, NY 10001
>
> My Skype: nathanathan3 <http://is.gd/OyRVnD>
>
> My Phone Number: 1-425-296-1123
>
> www.ecohealthalliance.org
>
> EcoHealth Alliance leads cutting-edge research into the critical
> connections between human and wildlife health and delicate ecosystems. With
> this science we develop solutions that promote conservation and prevent
> pandemics.
>
Re: Need Help Configuring EntityhubLinkingEngine
Posted by Nathan Breit <br...@ecohealthalliance.org>.
Thanks for your assistance Rafa. Unfortunately, I'm still stuck. I used the
following longer test string that was detected as en, "This is really
English text and dengue hemorrhagic fever is a disease." However, there
were still no entity annotations returned. This was printed in my error.log:
```
01.06.2016 13:14:40.641 *INFO* [Thread-7]
org.apache.stanbol.enhancer.engines.langid.LangIdEnhancementEngine language
identified as en
01.06.2016 13:14:40.670 *INFO* [Thread-5]
org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine
EntityLinking Statistics:
01.06.2016 13:14:40.670 *INFO* [Thread-5]
org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine
- overal: 7ms (text processing: 6%, lookup: 91%, matching 0%, ranking
0%, other 3%)
01.06.2016 13:14:40.670 *INFO* [Thread-5]
org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine
- Text Processing: 0.399572ms [count: 5 | time: 0.0799144ms
(max:0.366414, min:0.007158)]
01.06.2016 13:14:40.670 *INFO* [Thread-5]
org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine
- Vocabulary Lookup: 6.356819ms [count: 4 | time: 1.58920475ms
(max:2.560572, min:0.893326)]
01.06.2016 13:14:40.670 *INFO* [Thread-5]
org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine
- cache hits: 1 (25.0%)
01.06.2016 13:14:40.670 *INFO* [Thread-5]
org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine
- 0 query results (0 filtered - NaN%)
01.06.2016 13:14:40.670 *INFO* [Thread-5]
org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine
- Label Matching: 0.003802ms [count: 4 | time: 9.505E-4ms (max:0.001065,
min:8.85E-4)]
01.06.2016 13:14:40.670 *INFO* [Thread-5]
org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine
- Suggestion Ranking: 0.0ms [count: 0 | time: NaNms (max:-1.0E-6,
min:9.223372036854775E12)]
01.06.2016 13:14:40.671 *INFO* [qtp621234008-38]
org.apache.stanbol.enhancer.jobmanager.event.impl.EventJobManagerImpl
Execution of Chain doidEnhancerChain finished after 36ms for ContentItem
<urn:content-item-sha1-f506f062502e1c37eddbc5777073a1239cba0c4e>
01.06.2016 13:14:40.672 *INFO* [qtp621234008-38]
org.apache.stanbol.enhancer.servicesapi.EnhancementJobManager > processed
ContentItem
<urn:content-item-sha1-f506f062502e1c37eddbc5777073a1239cba0c4e> with Chain
'doidEnhancerChain' in 34ms | chain:[langid: 6ms (18%), tika: 0ms (0%),
opennlp-sentence: 1ms (3%), opennlp-token: 0ms (0%), opennlp-pos: 3ms (9%),
opennlp-ner: 5ms (15%), dbpediaLinking: 1ms (3%), entityhubExtraction: 18ms
(53%), doidEnhancer: 9ms (26%)], concurrency: 1.0 (0%)
```
I'm not sure what to make of NER mentions in the logs. My enhancement chain
does not include a NER, unless it is being invoked by another enhancer like
opennlp-pos.
Regards,
-Nathan
On Wed, Jun 1, 2016 at 5:32 PM, Rafa Haro <rh...@apache.org> wrote:
> Hi Nathan,
>
> You are testing the enhancer with a very short sentence and the Language
> Detection engine is identifying 'no' (probable Norwegian) as the sentence
> language. By default, Stanbol uses the identified language code for both
> loading OpenNLP models in that language and for entity lookup for searching
> only entity labels in that language. There is a couple of things you can do
> for avoiding an empty annotation is these situations:
>
> 1. Force the language code as a header in your request (curl request in
> this case)
> 2. Configure English 'en' or whatever language you know your dataset has
> labels for the entities as Default Matching Language which is missing in
> your configuration. More information here:
>
> https://stanbol.apache.org/docs/trunk/components/enhancer/engines/entitylinking
>
> Also, you also would probably like to disable NER engines for such kind of
> entities.
>
> Hope that helps,
> Rafa
>
> On Tue, May 31, 2016 at 6:13 PM Nathan Breit <br...@ecohealthalliance.org>
> wrote:
>
> > Hello,
> > I am trying to configure the Entityhub linking engine to use an Entityhub
> > site with vocabulary from the Disease Ontology (
> > http://disease-ontology.org/),
> > but when I enhance text with it, labels from the ontology are not being
> > annotated in the text. I am looking for advice on how to debug this. Here
> > is what I've tried so far:
> > - I used the genericrdf indexing tool to import the Disease Ontology
> into a
> > new Entityhub site. When I used the entityhub /find API endpoint to
> search
> > for the name "dengue hemorrhagic fever" a result from the Disease
> Ontology
> > was returned.
> > - I configured and built a EntityhubLinkingEngine and a WeightedChain
> > containing the linking engine. They show up on the Stanbol admin site and
> > felix console. These are the config files:
> >
> >
> https://github.com/ecohealthalliance/t11/tree/master/ansible/roles/stanbol/templates/enhancer
> > - When I used the following API call to enhance text containing the same
> > term I was able to find using the /find endpoint, the language detected
> is
> > the only annotation returned.
> >
> > curl -X POST -H "Accept: appltion/json" -H "Content-type: text/plain"
> > --data "Avoid dengue hemorrhagic fever."
> > http://54.197.175.163:3000/enhancer/chain/doidEnhancerChain
> >
> > This appears in the Stanbol error.log when the enhancement runs:
> >
> > ```
> > 31.05.2016 12:05:06.204 *INFO* [Thread-5]
> > org.apache.stanbol.enhancer.engines.langid.LangIdEnhancementEngine
> language
> > identified as no
> > 31.05.2016 12:05:06.206 *INFO* [Thread-5]
> >
> >
> org.apache.stanbol.enhancer.engines.opennlp.impl.NamedEntityExtractionEnhancementEngine
> > No NER Model for person and language no available!
> > 31.05.2016 12:05:06.206 *INFO* [Thread-5]
> >
> >
> org.apache.stanbol.enhancer.engines.opennlp.impl.NamedEntityExtractionEnhancementEngine
> > No NER Model for organization and language no available!
> > 31.05.2016 12:05:06.207 *INFO* [Thread-5]
> >
> >
> org.apache.stanbol.enhancer.engines.opennlp.impl.NamedEntityExtractionEnhancementEngine
> > No NER Model for location and language no available!
> > 31.05.2016 12:05:06.210 *INFO* [Thread-5]
> >
> >
> org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine
> > EntityLinking Statistics:
> > 31.05.2016 12:05:06.210 *INFO* [Thread-5]
> >
> >
> org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine
> > - overal: 2ms (text processing: 4%, lookup: 127%, matching 0%,
> ranking
> > 0%, other -31%)
> > 31.05.2016 12:05:06.210 *INFO* [Thread-5]
> >
> >
> org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine
> > - Text Processing: 0.071543ms [count: 4 | time: 0.01788575ms
> > (max:0.051031, min:0.005928)]
> > 31.05.2016 12:05:06.211 *INFO* [Thread-5]
> >
> >
> org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine
> > - Vocabulary Lookup: 2.541598ms [count: 3 | time: 0.8471993333333333ms
> > (max:1.190281, min:0.667284)]
> > 31.05.2016 12:05:06.211 *INFO* [Thread-5]
> >
> >
> org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine
> > - cache hits: 1 (33.333332%)
> > 31.05.2016 12:05:06.211 *INFO* [Thread-5]
> >
> >
> org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine
> > - 0 query results (0 filtered - NaN%)
> > 31.05.2016 12:05:06.211 *INFO* [Thread-5]
> >
> >
> org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine
> > - Label Matching: 0.00218ms [count: 3 | time: 7.266666666666667E-4ms
> > (max:7.55E-4, min:7.04E-4)]
> > 31.05.2016 12:05:06.211 *INFO* [Thread-5]
> >
> >
> org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine
> > - Suggestion Ranking: 0.0ms [count: 0 | time: NaNms (max:-1.0E-6,
> > min:9.223372036854775E12)]
> > 31.05.2016 12:05:06.214 *INFO* [qtp1118916813-38]
> > org.apache.stanbol.enhancer.jobmanager.event.impl.EventJobManagerImpl
> > Execution of Chain doidEnhancerChain finished after 14ms for ContentItem
> > <urn:content-item-sha1-d2851c0b02e12cc3b42bb6608fa2e1d50c43b17f>
> > 31.05.2016 12:05:06.215 *INFO* [qtp1118916813-38]
> > org.apache.stanbol.enhancer.servicesapi.EnhancementJobManager > processed
> > ContentItem
> > <urn:content-item-sha1-d2851c0b02e12cc3b42bb6608fa2e1d50c43b17f> with
> Chain
> > 'doidEnhancerChain' in 14ms | chain:[tika: 1ms (7%), langid: 3ms (21%),
> > opennlp-sentence: 0ms (0%), opennlp-token: 0ms (0%), opennlp-pos: 1ms
> (7%),
> > opennlp-ner: 1ms (7%), entityhubExtraction: 4ms (29%), doidEnhancer: 7ms
> > (50%), dbpediaLinking: 0ms (0%)], concurrency: 1.0 (0%)
> > ```
> >
> > The Ansible playbook here performs all the steps I am been using to set
> up
> > Stanbol: https://github.com/ecohealthalliance/t11/tree/master/ansible
> >
> > Thanks,
> > -Nathan Breit
> >
> > --
> >
> > Nathan Breit
> >
> > Software Developer
> >
> > EcoHealth Alliance
> >
> > 460 West 34th Street – 17th floor
> >
> > New York, NY 10001
> >
> > My Skype: nathanathan3 <http://is.gd/OyRVnD>
> >
> > My Phone Number: 1-425-296-1123
> >
> > www.ecohealthalliance.org
> >
> > EcoHealth Alliance leads cutting-edge research into the critical
> > connections between human and wildlife health and delicate ecosystems.
> With
> > this science we develop solutions that promote conservation and prevent
> > pandemics.
> >
>
--
Nathan Breit
Software Developer
EcoHealth Alliance
460 West 34th Street – 17th floor
New York, NY 10001
My Skype: nathanathan3 <http://is.gd/OyRVnD>
My Phone Number: 1-425-296-1123
www.ecohealthalliance.org
EcoHealth Alliance leads cutting-edge research into the critical
connections between human and wildlife health and delicate ecosystems. With
this science we develop solutions that promote conservation and prevent
pandemics.
Re: Need Help Configuring EntityhubLinkingEngine
Posted by Rafa Haro <rh...@apache.org>.
Hi Nathan,
You are testing the enhancer with a very short sentence and the Language
Detection engine is identifying 'no' (probable Norwegian) as the sentence
language. By default, Stanbol uses the identified language code for both
loading OpenNLP models in that language and for entity lookup for searching
only entity labels in that language. There is a couple of things you can do
for avoiding an empty annotation is these situations:
1. Force the language code as a header in your request (curl request in
this case)
2. Configure English 'en' or whatever language you know your dataset has
labels for the entities as Default Matching Language which is missing in
your configuration. More information here:
https://stanbol.apache.org/docs/trunk/components/enhancer/engines/entitylinking
Also, you also would probably like to disable NER engines for such kind of
entities.
Hope that helps,
Rafa
On Tue, May 31, 2016 at 6:13 PM Nathan Breit <br...@ecohealthalliance.org>
wrote:
> Hello,
> I am trying to configure the Entityhub linking engine to use an Entityhub
> site with vocabulary from the Disease Ontology (
> http://disease-ontology.org/),
> but when I enhance text with it, labels from the ontology are not being
> annotated in the text. I am looking for advice on how to debug this. Here
> is what I've tried so far:
> - I used the genericrdf indexing tool to import the Disease Ontology into a
> new Entityhub site. When I used the entityhub /find API endpoint to search
> for the name "dengue hemorrhagic fever" a result from the Disease Ontology
> was returned.
> - I configured and built a EntityhubLinkingEngine and a WeightedChain
> containing the linking engine. They show up on the Stanbol admin site and
> felix console. These are the config files:
>
> https://github.com/ecohealthalliance/t11/tree/master/ansible/roles/stanbol/templates/enhancer
> - When I used the following API call to enhance text containing the same
> term I was able to find using the /find endpoint, the language detected is
> the only annotation returned.
>
> curl -X POST -H "Accept: appltion/json" -H "Content-type: text/plain"
> --data "Avoid dengue hemorrhagic fever."
> http://54.197.175.163:3000/enhancer/chain/doidEnhancerChain
>
> This appears in the Stanbol error.log when the enhancement runs:
>
> ```
> 31.05.2016 12:05:06.204 *INFO* [Thread-5]
> org.apache.stanbol.enhancer.engines.langid.LangIdEnhancementEngine language
> identified as no
> 31.05.2016 12:05:06.206 *INFO* [Thread-5]
>
> org.apache.stanbol.enhancer.engines.opennlp.impl.NamedEntityExtractionEnhancementEngine
> No NER Model for person and language no available!
> 31.05.2016 12:05:06.206 *INFO* [Thread-5]
>
> org.apache.stanbol.enhancer.engines.opennlp.impl.NamedEntityExtractionEnhancementEngine
> No NER Model for organization and language no available!
> 31.05.2016 12:05:06.207 *INFO* [Thread-5]
>
> org.apache.stanbol.enhancer.engines.opennlp.impl.NamedEntityExtractionEnhancementEngine
> No NER Model for location and language no available!
> 31.05.2016 12:05:06.210 *INFO* [Thread-5]
>
> org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine
> EntityLinking Statistics:
> 31.05.2016 12:05:06.210 *INFO* [Thread-5]
>
> org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine
> - overal: 2ms (text processing: 4%, lookup: 127%, matching 0%, ranking
> 0%, other -31%)
> 31.05.2016 12:05:06.210 *INFO* [Thread-5]
>
> org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine
> - Text Processing: 0.071543ms [count: 4 | time: 0.01788575ms
> (max:0.051031, min:0.005928)]
> 31.05.2016 12:05:06.211 *INFO* [Thread-5]
>
> org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine
> - Vocabulary Lookup: 2.541598ms [count: 3 | time: 0.8471993333333333ms
> (max:1.190281, min:0.667284)]
> 31.05.2016 12:05:06.211 *INFO* [Thread-5]
>
> org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine
> - cache hits: 1 (33.333332%)
> 31.05.2016 12:05:06.211 *INFO* [Thread-5]
>
> org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine
> - 0 query results (0 filtered - NaN%)
> 31.05.2016 12:05:06.211 *INFO* [Thread-5]
>
> org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine
> - Label Matching: 0.00218ms [count: 3 | time: 7.266666666666667E-4ms
> (max:7.55E-4, min:7.04E-4)]
> 31.05.2016 12:05:06.211 *INFO* [Thread-5]
>
> org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine
> - Suggestion Ranking: 0.0ms [count: 0 | time: NaNms (max:-1.0E-6,
> min:9.223372036854775E12)]
> 31.05.2016 12:05:06.214 *INFO* [qtp1118916813-38]
> org.apache.stanbol.enhancer.jobmanager.event.impl.EventJobManagerImpl
> Execution of Chain doidEnhancerChain finished after 14ms for ContentItem
> <urn:content-item-sha1-d2851c0b02e12cc3b42bb6608fa2e1d50c43b17f>
> 31.05.2016 12:05:06.215 *INFO* [qtp1118916813-38]
> org.apache.stanbol.enhancer.servicesapi.EnhancementJobManager > processed
> ContentItem
> <urn:content-item-sha1-d2851c0b02e12cc3b42bb6608fa2e1d50c43b17f> with Chain
> 'doidEnhancerChain' in 14ms | chain:[tika: 1ms (7%), langid: 3ms (21%),
> opennlp-sentence: 0ms (0%), opennlp-token: 0ms (0%), opennlp-pos: 1ms (7%),
> opennlp-ner: 1ms (7%), entityhubExtraction: 4ms (29%), doidEnhancer: 7ms
> (50%), dbpediaLinking: 0ms (0%)], concurrency: 1.0 (0%)
> ```
>
> The Ansible playbook here performs all the steps I am been using to set up
> Stanbol: https://github.com/ecohealthalliance/t11/tree/master/ansible
>
> Thanks,
> -Nathan Breit
>
> --
>
> Nathan Breit
>
> Software Developer
>
> EcoHealth Alliance
>
> 460 West 34th Street – 17th floor
>
> New York, NY 10001
>
> My Skype: nathanathan3 <http://is.gd/OyRVnD>
>
> My Phone Number: 1-425-296-1123
>
> www.ecohealthalliance.org
>
> EcoHealth Alliance leads cutting-edge research into the critical
> connections between human and wildlife health and delicate ecosystems. With
> this science we develop solutions that promote conservation and prevent
> pandemics.
>