Using cTakes programmatically

[Maite Meseure Hugues <me...@gmail.com>]

Dear all,

I allow myself to contact you in order to ask you how I can simply add
cTAKES packages in my java code to get the same output than the XML output
from the CPE (using clinical-pipeline/ test_plaintext.xml as descriptor).
I've explored and tested the cTakes example ( using
ClinicalPipelineFactory.getDefaultPipeline() ) but I've got this error
message:

[...] https://uts-ws.nlm.nih.gov/restful/isValidUMLSUser: maitemeseure

Exception in thread "main"
org.apache.uima.resource.ResourceInitializationException: Initialization of
annotator class
"org.apache.ctakes.dictionary.lookup.ae.UmlsDictionaryLookupAnnotator"
failed.  (Descriptor: <unknown>)
Thanks a lot for your time.

Best regards

-- 
--
 Maïté Meseure Hugues

RE: Using cTakes programmatically

["Finan, Sean" <Se...@childrens.harvard.edu>]

Hi Maite Meseure,

Check the cTakes User guide on UMLS setup:

https://cwiki.apache.org/confluence/display/CTAKES/cTAKES+3.2+User+Install+Guide#cTAKES3.2UserInstallGuide-(Recommended)AddUMLSaccessrights

which (in part) points you towards obtaining a license to use the NIH UMLS dictionary:

https://uts.nlm.nih.gov/license.html



Sean

________________________________________
From: Maite Meseure Hugues [meseure.maite@gmail.com]
Sent: Monday, December 29, 2014 4:17 PM
To: dev@ctakes.apache.org
Subject: Using cTakes programmatically

Dear all,

I allow myself to contact you in order to ask you how I can simply add
cTAKES packages in my java code to get the same output than the XML output
from the CPE (using clinical-pipeline/ test_plaintext.xml as descriptor).
I've explored and tested the cTakes example ( using
ClinicalPipelineFactory.getDefaultPipeline() ) but I've got this error
message:

[...] https://uts-ws.nlm.nih.gov/restful/isValidUMLSUser: maitemeseure

Exception in thread "main"
org.apache.uima.resource.ResourceInitializationException: Initialization of
annotator class
"org.apache.ctakes.dictionary.lookup.ae.UmlsDictionaryLookupAnnotator"
failed.  (Descriptor: <unknown>)
Thanks a lot for your time.

Best regards

--
--
 Maïté Meseure Hugues