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Posted to dev@ctakes.apache.org by am...@acolade.co.in on 2018/03/16 06:34:07 UTC
Build failure in Ctakes developer installation
[INFO] Scanning for projects...
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Build Order:
[INFO]
[INFO] Apache cTAKES
[INFO] ctakes-gui-res
[INFO] Apache cTAKES Resources coreference
[INFO] Apache cTAKES Resources temporal
[INFO] Apache cTAKES Resources relation-extractor
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res
[INFO] Apache cTAKES Resources core
[INFO] Apache cTAKES common type system
[INFO] Apache cTAKES utils
[INFO] Apache cTAKES core
[INFO] Apache cTAKES dictionary lookup fast
[INFO] Apache cTAKES document preprocessor
[INFO] Apache cTAKES Resources lvg
[INFO] Apache cTAKES LVG lexical tools
[INFO] Apache cTAKES Resources ne-contexts
[INFO] Apache cTAKES named entity contexts
[INFO] Apache cTAKES Resources assertion
[INFO] Apache cTAKES Resources constituency-parser
[INFO] Apache cTAKES Constituency Parser
[INFO] Apache cTAKES Resources dependency-parser
[INFO] Apache cTAKES Resources pos-tagger
[INFO] Apache cTAKES part-of-speech tagger
[INFO] Apache cTAKES Dependency Parser
[INFO] Apache cTAKES context dependent tokenizer
[INFO] Apache cTAKES Resources ctakes-chunker-res
[INFO] Apache cTAKES chunker
[INFO] Apache cTAKES Assertion
[INFO] ctakes-clinical-pipeline-res
[INFO] Apache cTAKES ctakes-clinical-pipeline
[INFO] Apache cTAKES Relation Extractor
[INFO] Apache cTAKES Temporal Information Extraction
[INFO] Apache cTAKES CoReference Resolver
[INFO] ctakes-gui
[INFO] Apache cTAKES Resources dictionary-lookup
[INFO] Apache cTAKES dictionary lookup
[INFO] Apache cTAKES Resources drug-ner
[INFO] Apache cTAKES Drug NER
[INFO] Apache cTAKES Resources side-effect
[INFO] Apache cTAKES Side Effects
[INFO] Apache cTAKES Resources smoking-status
[INFO] Apache cTAKES Smoking Status
[INFO] Apache cTAKES Resources assertion-zoner
[INFO] Apache cTAKES Assertion's zoner
[INFO] ctakes-examples-res
[INFO] ctakes-examples
[INFO] Apache cTAKES Resources ctakes-ytex-res
[INFO] Apache cTAKES YTEX
[INFO] Apache cTAKES YTEX UIMA
[INFO] Apache cTAKES YTEX Web
[INFO] Apache cTAKES Distribution
[INFO] Apache cTAKES Regression-test
[INFO] Apache cTAKES template filler
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES 4.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes ---
[INFO]
[INFO] --- maven-site-plugin:3.1:attach-descriptor (attach-descriptor) @ ctakes ---
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building ctakes-gui-res 4.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-gui-res ---
[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-gui-res ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 85 resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-gui-res ---
[INFO] No sources to compile
[INFO]
[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-gui-res ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-gui-res\src\test\resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-gui-res ---
[INFO] Nothing to compile - all classes are up to date
[INFO]
[INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @ ctakes-gui-res ---
[INFO] Surefire report directory: C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-gui-res\target\surefire-reports
-------------------------------------------------------
T E S T S
-------------------------------------------------------
Results :
Tests run: 0, Failures: 0, Errors: 0, Skipped: 0
[INFO]
[INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ ctakes-gui-res ---
[INFO] Building jar: C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-gui-res\target\ctakes-gui-res-4.0.1-SNAPSHOT.jar
[INFO]
[INFO] --- maven-site-plugin:3.1:attach-descriptor (attach-descriptor) @ ctakes-gui-res ---
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES Resources coreference 4.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-coreference-res ---
[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-coreference-res ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 53 resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-coreference-res ---
[INFO] No sources to compile
[INFO]
[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-coreference-res ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-coreference-res\src\test\resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-coreference-res ---
[INFO] No sources to compile
[INFO]
[INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @ ctakes-coreference-res ---
[INFO] Surefire report directory: C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-coreference-res\target\surefire-reports
-------------------------------------------------------
T E S T S
-------------------------------------------------------
Results :
Tests run: 0, Failures: 0, Errors: 0, Skipped: 0
[INFO]
[INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ ctakes-coreference-res ---
[INFO] Building jar: C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-coreference-res\target\ctakes-coreference-res-4.0.1-SNAPSHOT.jar
[INFO]
[INFO] --- maven-site-plugin:3.1:attach-descriptor (attach-descriptor) @ ctakes-coreference-res ---
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES Resources temporal 4.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-temporal-res ---
[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-temporal-res ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 24 resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-temporal-res ---
[INFO] No sources to compile
[INFO]
[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-temporal-res ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-temporal-res\src\test\resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-temporal-res ---
[INFO] No sources to compile
[INFO]
[INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @ ctakes-temporal-res ---
[INFO] Surefire report directory: C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-temporal-res\target\surefire-reports
-------------------------------------------------------
T E S T S
-------------------------------------------------------
Results :
Tests run: 0, Failures: 0, Errors: 0, Skipped: 0
[INFO]
[INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ ctakes-temporal-res ---
[INFO] Building jar: C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-temporal-res\target\ctakes-temporal-res-4.0.1-SNAPSHOT.jar
[INFO]
[INFO] --- maven-site-plugin:3.1:attach-descriptor (attach-descriptor) @ ctakes-temporal-res ---
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES Resources relation-extractor 4.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-relation-extractor-res ---
[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-relation-extractor-res ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 10 resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-relation-extractor-res ---
[INFO] No sources to compile
[INFO]
[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-relation-extractor-res ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-relation-extractor-res\src\test\resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-relation-extractor-res ---
[INFO] No sources to compile
[INFO]
[INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @ ctakes-relation-extractor-res ---
[INFO] Surefire report directory: C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-relation-extractor-res\target\surefire-reports
-------------------------------------------------------
T E S T S
-------------------------------------------------------
Results :
Tests run: 0, Failures: 0, Errors: 0, Skipped: 0
[INFO]
[INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ ctakes-relation-extractor-res ---
[INFO] Building jar: C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-relation-extractor-res\target\ctakes-relation-extractor-res-4.0.1-SNAPSHOT.jar
[INFO]
[INFO] --- maven-site-plugin:3.1:attach-descriptor (attach-descriptor) @ ctakes-relation-extractor-res ---
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES Resources dictionary-lookup-fast-res 4.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-dictionary-lookup-fast-res ---
[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-dictionary-lookup-fast-res ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 9 resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-dependency-plugin:2.8:unpack-dependencies (unpack-dependencies-ide) @ ctakes-dictionary-lookup-fast-res ---
[INFO] ctakes-resources-sno_rx-4.0.0.jar already exists in destination.
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-dictionary-lookup-fast-res ---
[INFO] No sources to compile
[INFO]
[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-dictionary-lookup-fast-res ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-dictionary-lookup-fast-res\src\test\resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-dictionary-lookup-fast-res ---
[INFO] No sources to compile
[INFO]
[INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @ ctakes-dictionary-lookup-fast-res ---
[INFO] Surefire report directory: C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-dictionary-lookup-fast-res\target\surefire-reports
-------------------------------------------------------
T E S T S
-------------------------------------------------------
Results :
Tests run: 0, Failures: 0, Errors: 0, Skipped: 0
[INFO]
[INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ ctakes-dictionary-lookup-fast-res ---
[INFO] Building jar: C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-dictionary-lookup-fast-res\target\ctakes-dictionary-lookup-fast-res-4.0.1-SNAPSHOT.jar
[INFO]
[INFO] --- maven-site-plugin:3.1:attach-descriptor (attach-descriptor) @ ctakes-dictionary-lookup-fast-res ---
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES Resources core 4.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-core-res ---
[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-core-res ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 24 resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-core-res ---
[INFO] Nothing to compile - all classes are up to date
[INFO]
[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-core-res ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-core-res\src\test\resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-core-res ---
[INFO] Nothing to compile - all classes are up to date
[INFO]
[INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @ ctakes-core-res ---
[INFO] Surefire report directory: C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-core-res\target\surefire-reports
-------------------------------------------------------
T E S T S
-------------------------------------------------------
Results :
Tests run: 0, Failures: 0, Errors: 0, Skipped: 0
[INFO]
[INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ ctakes-core-res ---
[INFO] Building jar: C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-core-res\target\ctakes-core-res-4.0.1-SNAPSHOT.jar
[INFO]
[INFO] --- maven-site-plugin:3.1:attach-descriptor (attach-descriptor) @ ctakes-core-res ---
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES common type system 4.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-type-system ---
[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-type-system ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 3 resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- jcasgen-maven-plugin:2.10.2:generate (default) @ ctakes-type-system ---
[INFO] JCasGen: Found descriptor 'C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-type-system\src\main\resources\org\apache\ctakes\typesystem\types\TypeSystem.xml'
[INFO] JCasGen: Limiting generation to descriptors in 'C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-type-system'
[INFO] JCasGen: Output going to 'C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-type-system\target\generated-sources\jcasgen'
[INFO] JCasGen: Reading the XML TAE descriptor, and creating types, for xml input file 'C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-type-system\target\jcasgen\typesystem.xml'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.AnatomicalSite'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.AnatomicalSite_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Attribute'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Attribute_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.BodyLaterality'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.BodyLaterality_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.BodySide'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.BodySide_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Course'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Course_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Date'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Date_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Element'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Element_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Entity'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Entity_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Event'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Event_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.EventProperties'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.EventProperties_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Lab'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Lab_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.LabDeltaFlag'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.LabDeltaFlag_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.LabReferenceRange'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.LabReferenceRange_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.LabValue'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.LabValue_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Medication'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Medication_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.MedicationDosage'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.MedicationDosage_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.MedicationDuration'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.MedicationDuration_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.MedicationForm'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.MedicationForm_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.MedicationFrequency'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.MedicationFrequency_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.MedicationRoute'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.MedicationRoute_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.MedicationStatusChange'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.MedicationStatusChange_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.MedicationStrength'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.MedicationStrength_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.OntologyConcept'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.OntologyConcept_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Procedure'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Procedure_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.ProcedureDevice'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.ProcedureDevice_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.ProcedureMethod'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.ProcedureMethod_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Severity'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Severity_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.SignSymptom'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.SignSymptom_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Time'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Time_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.UmlsConcept'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.UmlsConcept_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.Affects'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.Affects_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.AffectsTextRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.AffectsTextRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.AspectualTextRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.AspectualTextRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.AttributeRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.AttributeRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.BinaryTextRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.BinaryTextRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.CausesBringsAbout'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.CausesBringsAbout_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.CausesBringsAboutTextRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.CausesBringsAboutTextRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.CollectionTextRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.CollectionTextRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.CollectionTextRelationIdentifiedAnnotationRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.CollectionTextRelationIdentifiedAnnotationRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.ComplicatesDisrupts'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.ComplicatesDisrupts_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.ComplicatesDisruptsTextRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.ComplicatesDisruptsTextRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.Contraindicates'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.Contraindicates_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.ContraindicatesTextRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.ContraindicatesTextRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.CoreferenceRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.CoreferenceRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.DegreeOf'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.DegreeOf_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.DegreeOfTextRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.DegreeOfTextRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.Diagnoses'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.Diagnoses_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.DiagnosesTextRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.DiagnosesTextRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.ElementRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.ElementRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.Indicates'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.Indicates_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.IndicatesTextRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.IndicatesTextRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.IsIndicatedFor'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.IsIndicatedFor_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.IsIndicatedForTextRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.IsIndicatedForTextRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.LocationOf'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.LocationOf_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.LocationOfTextRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.LocationOfTextRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.ManagesTreats'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.ManagesTreats_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.ManagesTreatsTextRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.ManagesTreatsTextRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.ManifestationOf'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.ManifestationOf_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.ManifestationOfTextRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.ManifestationOfTextRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.Prevents'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.Prevents_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.PreventsTextRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.PreventsTextRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.Relation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.Relation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.RelationArgument'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.RelationArgument_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.ResultOf'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.ResultOf_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.ResultOfTextRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.ResultOfTextRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.TemporalRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.TemporalRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.TemporalTextRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.TemporalTextRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.UMLSRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.UMLSRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.structured.Demographics'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.structured.Demographics_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.structured.DocumentClassification'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.structured.DocumentClassification_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.structured.DocumentID'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.structured.DocumentID_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.structured.DocumentIdPrefix'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.structured.DocumentIdPrefix_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.structured.DocumentPath'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.structured.DocumentPath_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.structured.Metadata'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.structured.Metadata_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.structured.SourceData'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.structured.SourceData_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.ADJP'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.ADJP_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.ADVP'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.ADVP_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.BaseToken'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.BaseToken_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.CONJP'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.CONJP_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.Chunk'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.Chunk_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.ContractionToken'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.ContractionToken_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.INTJ'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.INTJ_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.LST'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.LST_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.Lemma'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.Lemma_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.NP'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.NP_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.NewlineToken'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.NewlineToken_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.NumToken'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.NumToken_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.O'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.O_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.PP'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.PP_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.PRT'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.PRT_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.PunctuationToken'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.PunctuationToken_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.SBAR'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.SBAR_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.StanfordDependency'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.StanfordDependency_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.SymbolToken'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.SymbolToken_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.TerminalTreebankNode'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.TerminalTreebankNode_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.TopTreebankNode'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.TopTreebankNode_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.TreebankNode'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.TreebankNode_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.UCP'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.UCP_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.VP'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.VP_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.WordToken'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.WordToken_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.BodyLateralityModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.BodyLateralityModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.BodySideModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.BodySideModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.ConditionalModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.ConditionalModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.ContextAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.ContextAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.CourseModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.CourseModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.DateAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.DateAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.EntityMention'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.EntityMention_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.EventMention'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.EventMention_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.FractionAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.FractionAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.GenericModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.GenericModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.HistoryOfModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.HistoryOfModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.LabDeltaFlagModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.LabDeltaFlagModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.LabEstimatedModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.LabEstimatedModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.LabInterpretationModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.LabInterpretationModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.LabMention'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.LabMention_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.LabReferenceRangeModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.LabReferenceRangeModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.LabValueModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.LabValueModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.Markable'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.Markable_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationAllergyModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationAllergyModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationDosageModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationDosageModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationDurationModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationDurationModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationEventMention'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationEventMention_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationFormModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationFormModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationFrequencyModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationFrequencyModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationMention'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationMention_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationRouteModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationRouteModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationStatusChangeModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationStatusChangeModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationStrengthModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationStrengthModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.Modifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.Modifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.PersonTitleAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.PersonTitleAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.PolarityModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.PolarityModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.Predicate'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.Predicate_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.ProcedureDeviceModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.ProcedureDeviceModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.ProcedureMention'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.ProcedureMention_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.ProcedureMethodModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.ProcedureMethodModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.RangeAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.RangeAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.RomanNumeralAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.RomanNumeralAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SemanticArgument'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SemanticArgument_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SemanticRoleRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SemanticRoleRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SeverityModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SeverityModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SignSymptomMention'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SignSymptomMention_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SubjectModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SubjectModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.TimeAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.TimeAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.TimeMention'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.TimeMention_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.UncertaintyModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.UncertaintyModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.List'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.List_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.ListEntry'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.ListEntry_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.Paragraph'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.Paragraph_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.Segment'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.Segment_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.Sentence'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.Sentence_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.util.Pair'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.util.Pair_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.util.Pairs'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.util.Pairs_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.util.ProbabilityDistribution'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.util.ProbabilityDistribution_Type'.
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-type-system ---
[INFO] Compiling 322 source files to C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-type-system\target\classes
[INFO]
[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-type-system ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-type-system\src\test\resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-type-system ---
[INFO] No sources to compile
[INFO]
[INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @ ctakes-type-system ---
[INFO] Surefire report directory: C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-type-system\target\surefire-reports
-------------------------------------------------------
T E S T S
-------------------------------------------------------
Results :
Tests run: 0, Failures: 0, Errors: 0, Skipped: 0
[INFO]
[INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ ctakes-type-system ---
[INFO] Building jar: C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-type-system\target\ctakes-type-system-4.0.1-SNAPSHOT.jar
[INFO]
[INFO] --- maven-site-plugin:3.1:attach-descriptor (attach-descriptor) @ ctakes-type-system ---
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES utils 4.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-utils ---
[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-utils ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-utils\src\main\resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-utils ---
[INFO] Nothing to compile - all classes are up to date
[INFO]
[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-utils ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-utils\src\test\resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-utils ---
[INFO] No sources to compile
[INFO]
[INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @ ctakes-utils ---
[INFO] Surefire report directory: C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-utils\target\surefire-reports
-------------------------------------------------------
T E S T S
-------------------------------------------------------
Results :
Tests run: 0, Failures: 0, Errors: 0, Skipped: 0
[INFO]
[INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ ctakes-utils ---
[INFO] Building jar: C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-utils\target\ctakes-utils-4.0.1-SNAPSHOT.jar
[INFO]
[INFO] --- maven-site-plugin:3.1:attach-descriptor (attach-descriptor) @ ctakes-utils ---
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES core 4.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-core ---
[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-core ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-core\src\main\resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-core ---
[INFO] Nothing to compile - all classes are up to date
[INFO]
[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-core ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-core\src\test\resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-core ---
[INFO] Nothing to compile - all classes are up to date
[INFO]
[INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @ ctakes-core ---
[INFO] Surefire report directory: C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-core\target\surefire-reports
-------------------------------------------------------
T E S T S
-------------------------------------------------------
Running org.apache.ctakes.core.ae.SentenceDetectorAnnotatorTest
Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 0.286 sec <<< FAILURE!
Running org.apache.ctakes.core.ae.SimpleSegmentAnnotatorTests
Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 0.017 sec <<< FAILURE!
Running org.apache.ctakes.core.ae.TestCDASegmentAnnotator
Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 0 sec <<< FAILURE!
Running org.apache.ctakes.core.ae.TokenizerAnnotatorPTBTests
Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 0 sec <<< FAILURE!
Running org.apache.ctakes.core.ci.HyphenTextModifierImplTests
Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 0.016 sec <<< FAILURE!
Results :
Tests in error:
initializationError(org.apache.ctakes.core.ae.SentenceDetectorAnnotatorTest): org/hamcrest/SelfDescribing
initializationError(org.apache.ctakes.core.ae.SimpleSegmentAnnotatorTests): org/hamcrest/SelfDescribing
initializationError(org.apache.ctakes.core.ae.TestCDASegmentAnnotator): org/hamcrest/SelfDescribing
initializationError(org.apache.ctakes.core.ae.TokenizerAnnotatorPTBTests): org/hamcrest/SelfDescribing
initializationError(org.apache.ctakes.core.ci.HyphenTextModifierImplTests): org/hamcrest/SelfDescribing
Tests run: 5, Failures: 0, Errors: 5, Skipped: 0
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ...................................... SUCCESS [ 5.764 s]
[INFO] ctakes-gui-res ..................................... SUCCESS [ 6.106 s]
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [ 7.051 s]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [ 2.113 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [ 0.820 s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [ 3.752 s]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [ 1.339 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [ 12.484 s]
[INFO] Apache cTAKES utils ................................ SUCCESS [ 1.700 s]
[INFO] Apache cTAKES core ................................. FAILURE [ 6.373 s]
[INFO] Apache cTAKES dictionary lookup fast ............... SKIPPED
[INFO] Apache cTAKES document preprocessor ................ SKIPPED
[INFO] Apache cTAKES Resources lvg ........................ SKIPPED
[INFO] Apache cTAKES LVG lexical tools .................... SKIPPED
[INFO] Apache cTAKES Resources ne-contexts ................ SKIPPED
[INFO] Apache cTAKES named entity contexts ................ SKIPPED
[INFO] Apache cTAKES Resources assertion .................. SKIPPED
[INFO] Apache cTAKES Resources constituency-parser ........ SKIPPED
[INFO] Apache cTAKES Constituency Parser .................. SKIPPED
[INFO] Apache cTAKES Resources dependency-parser .......... SKIPPED
[INFO] Apache cTAKES Resources pos-tagger ................. SKIPPED
[INFO] Apache cTAKES part-of-speech tagger ................ SKIPPED
[INFO] Apache cTAKES Dependency Parser .................... SKIPPED
[INFO] Apache cTAKES context dependent tokenizer .......... SKIPPED
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SKIPPED
[INFO] Apache cTAKES chunker .............................. SKIPPED
[INFO] Apache cTAKES Assertion ............................ SKIPPED
[INFO] ctakes-clinical-pipeline-res ....................... SKIPPED
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SKIPPED
[INFO] Apache cTAKES Relation Extractor ................... SKIPPED
[INFO] Apache cTAKES Temporal Information Extraction ...... SKIPPED
[INFO] Apache cTAKES CoReference Resolver ................. SKIPPED
[INFO] ctakes-gui ......................................... SKIPPED
[INFO] Apache cTAKES Resources dictionary-lookup .......... SKIPPED
[INFO] Apache cTAKES dictionary lookup .................... SKIPPED
[INFO] Apache cTAKES Resources drug-ner ................... SKIPPED
[INFO] Apache cTAKES Drug NER ............................. SKIPPED
[INFO] Apache cTAKES Resources side-effect ................ SKIPPED
[INFO] Apache cTAKES Side Effects ......................... SKIPPED
[INFO] Apache cTAKES Resources smoking-status ............. SKIPPED
[INFO] Apache cTAKES Smoking Status ....................... SKIPPED
[INFO] Apache cTAKES Resources assertion-zoner ............ SKIPPED
[INFO] Apache cTAKES Assertion's zoner .................... SKIPPED
[INFO] ctakes-examples-res ................................ SKIPPED
[INFO] ctakes-examples .................................... SKIPPED
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SKIPPED
[INFO] Apache cTAKES YTEX ................................. SKIPPED
[INFO] Apache cTAKES YTEX UIMA ............................ SKIPPED
[INFO] Apache cTAKES YTEX Web ............................. SKIPPED
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... SKIPPED
[INFO] Apache cTAKES template filler ...................... SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 49.189 s
[INFO] Finished at: 2018-03-16T12:03:30+05:30
[INFO] Final Memory: 48M/485M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (default-test) on project ctakes-core: There are test failures.
[ERROR]
[ERROR] Please refer to C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-core\target\surefire-reports for the individual test results.
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-core
How solve it??????
Thanks & Regards
AMAL M
9633746869
RE: Build failure in Ctakes developer installation
Posted by am...@acolade.co.in.
now it will fail at cTakes yex uima
all:
[INFO] Executed tasks
[INFO]
[INFO] --- maven-surefire-plugin:2.12.1:test (surefire-it) @ ctakes-ytex-uima ---
[INFO] Surefire report directory: C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-ytex-uima\target\surefire-reports
-------------------------------------------------------
T E S T S
-------------------------------------------------------
-------------------------------------------------------
T E S T S
-------------------------------------------------------
Running org.apache.ctakes.ytex.tools.SetupAuiFirstWordTest
Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 0.534 sec <<< FAILURE!
Running org.apache.ctakes.ytex.uima.annotators.DateAnnotatorTest
Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 0.084 sec <<< FAILURE!
Running org.apache.ctakes.ytex.uima.annotators.DBCollectionReaderTest
Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 0.047 sec <<< FAILURE!
Running org.apache.ctakes.ytex.uima.annotators.DBConsumerTest
Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 0.041 sec <<< FAILURE!
Running org.apache.ctakes.ytex.uima.annotators.DictionaryLookupAnnotatorTest
Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 0.031 sec <<< FAILURE!
Running org.apache.ctakes.ytex.uima.annotators.NamedEntityRegexTest
Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 0.068 sec <<< FAILURE!
Running org.apache.ctakes.ytex.uima.annotators.SegmentRegexTest
Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 0.031 sec <<< FAILURE!
Running org.apache.ctakes.ytex.uima.annotators.SenseDisambiguatorAnnotatorTest
Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 0.054 sec <<< FAILURE!
Running org.apache.ctakes.ytex.uima.annotators.SentenceDetectorTest
Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 0.045 sec <<< FAILURE!
Running org.apache.ctakes.ytex.uima.annotators.SparseDataExporterTest
Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 0.054 sec <<< FAILURE!
Results :
Tests in error:
initializationError(org.apache.ctakes.ytex.tools.SetupAuiFirstWordTest): org/hamcrest/SelfDescribing
initializationError(org.apache.ctakes.ytex.uima.annotators.DateAnnotatorTest): org/hamcrest/SelfDescribing
initializationError(org.apache.ctakes.ytex.uima.annotators.DBCollectionReaderTest): org/hamcrest/SelfDescribing
initializationError(org.apache.ctakes.ytex.uima.annotators.DBConsumerTest): org/hamcrest/SelfDescribing
initializationError(org.apache.ctakes.ytex.uima.annotators.DictionaryLookupAnnotatorTest): org/hamcrest/SelfDescribing
initializationError(org.apache.ctakes.ytex.uima.annotators.NamedEntityRegexTest): org/hamcrest/SelfDescribing
initializationError(org.apache.ctakes.ytex.uima.annotators.SegmentRegexTest): org/hamcrest/SelfDescribing
initializationError(org.apache.ctakes.ytex.uima.annotators.SenseDisambiguatorAnnotatorTest): org/hamcrest/SelfDescribing
initializationError(org.apache.ctakes.ytex.uima.annotators.SentenceDetectorTest): org/hamcrest/SelfDescribing
initializationError(org.apache.ctakes.ytex.uima.annotators.SparseDataExporterTest): org/hamcrest/SelfDescribing
Tests run: 10, Failures: 0, Errors: 10, Skipped: 0
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ...................................... SUCCESS [ 7.101 s]
[INFO] ctakes-gui-res ..................................... SUCCESS [ 3.669 s]
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [ 8.996 s]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [ 1.368 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [ 0.737 s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [ 3.614 s]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [ 1.098 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [ 11.533 s]
[INFO] Apache cTAKES utils ................................ SUCCESS [ 1.105 s]
[INFO] Apache cTAKES core ................................. SUCCESS [ 6.017 s]
[INFO] Apache cTAKES dictionary lookup fast ............... SUCCESS [ 1.919 s]
[INFO] Apache cTAKES document preprocessor ................ SUCCESS [ 0.888 s]
[INFO] Apache cTAKES Resources lvg ........................ SUCCESS [ 0.769 s]
[INFO] Apache cTAKES LVG lexical tools .................... SUCCESS [ 1.275 s]
[INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [ 1.307 s]
[INFO] Apache cTAKES named entity contexts ................ SUCCESS [ 1.040 s]
[INFO] Apache cTAKES Resources assertion .................. SUCCESS [ 3.879 s]
[INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [ 7.519 s]
[INFO] Apache cTAKES Constituency Parser .................. SUCCESS [ 3.827 s]
[INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [ 40.914 s]
[INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [ 3.033 s]
[INFO] Apache cTAKES part-of-speech tagger ................ SUCCESS [ 2.766 s]
[INFO] Apache cTAKES Dependency Parser .................... SUCCESS [ 1.206 s]
[INFO] Apache cTAKES context dependent tokenizer .......... SUCCESS [ 1.685 s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [ 1.831 s]
[INFO] Apache cTAKES chunker .............................. SUCCESS [ 1.072 s]
[INFO] Apache cTAKES Assertion ............................ SUCCESS [ 6.009 s]
[INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [ 0.501 s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SUCCESS [ 1.928 s]
[INFO] Apache cTAKES Relation Extractor ................... SUCCESS [ 3.047 s]
[INFO] Apache cTAKES Temporal Information Extraction ...... SUCCESS [ 33.492 s]
[INFO] Apache cTAKES CoReference Resolver ................. SUCCESS [ 9.204 s]
[INFO] ctakes-gui ......................................... SUCCESS [ 3.059 s]
[INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [ 0.651 s]
[INFO] Apache cTAKES dictionary lookup .................... SUCCESS [ 2.569 s]
[INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [ 0.731 s]
[INFO] Apache cTAKES Drug NER ............................. SUCCESS [ 3.376 s]
[INFO] Apache cTAKES Resources side-effect ................ SUCCESS [ 0.763 s]
[INFO] Apache cTAKES Side Effects ......................... SUCCESS [ 2.838 s]
[INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [ 2.104 s]
[INFO] Apache cTAKES Smoking Status ....................... SUCCESS [ 3.935 s]
[INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [ 0.870 s]
[INFO] Apache cTAKES Assertion's zoner .................... SUCCESS [ 1.987 s]
[INFO] ctakes-examples-res ................................ SUCCESS [ 5.946 s]
[INFO] ctakes-examples .................................... SUCCESS [ 3.611 s]
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [ 0.762 s]
[INFO] Apache cTAKES YTEX ................................. SUCCESS [07:39 min]
[INFO] Apache cTAKES YTEX UIMA ............................ FAILURE [32:24 min]
[INFO] Apache cTAKES YTEX Web ............................. SKIPPED
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... SKIPPED
[INFO] Apache cTAKES template filler ...................... SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 43:35 min
[INFO] Finished at: 2018-03-16T12:57:17+05:30
[INFO] Final Memory: 91M/1447M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (surefire-it) on project ctakes-ytex-uima: There are test failures.
[ERROR]
[ERROR] Please refer to C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-ytex-uima\target\surefire-reports for the individual test results.
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-ytex-uima
Thanks & Regards
AMAL M
9633746869
--------- Original Message --------- Subject: RE: Build failure in Ctakes developer installation
From: "Gandhi Rajan Natarajan" <Ga...@arisglobal.com>
Date: 3/16/18 12:07 pm
To: "dev@ctakes.apache.org" <de...@ctakes.apache.org>
Try disabling test cases and building it. Try using the following command:
"mvn install -Dmaven.test.skip=true"
Regards,
Gandhi
-----Original Message-----
From: amal.m@acolade.co.in [mailto:amal.m@acolade.co.in]
Sent: Friday, March 16, 2018 12:04 PM
To: dev@ctakes.apache.org
Subject: Build failure in Ctakes developer installation
[INFO] Scanning for projects...
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Build Order:
[INFO]
[INFO] Apache cTAKES
[INFO] ctakes-gui-res
[INFO] Apache cTAKES Resources coreference
[INFO] Apache cTAKES Resources temporal
[INFO] Apache cTAKES Resources relation-extractor
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res
[INFO] Apache cTAKES Resources core
[INFO] Apache cTAKES common type system
[INFO] Apache cTAKES utils
[INFO] Apache cTAKES core
[INFO] Apache cTAKES dictionary lookup fast
[INFO] Apache cTAKES document preprocessor
[INFO] Apache cTAKES Resources lvg
[INFO] Apache cTAKES LVG lexical tools
[INFO] Apache cTAKES Resources ne-contexts
[INFO] Apache cTAKES named entity contexts
[INFO] Apache cTAKES Resources assertion
[INFO] Apache cTAKES Resources constituency-parser
[INFO] Apache cTAKES Constituency Parser
[INFO] Apache cTAKES Resources dependency-parser
[INFO] Apache cTAKES Resources pos-tagger
[INFO] Apache cTAKES part-of-speech tagger
[INFO] Apache cTAKES Dependency Parser
[INFO] Apache cTAKES context dependent tokenizer
[INFO] Apache cTAKES Resources ctakes-chunker-res
[INFO] Apache cTAKES chunker
[INFO] Apache cTAKES Assertion
[INFO] ctakes-clinical-pipeline-res
[INFO] Apache cTAKES ctakes-clinical-pipeline
[INFO] Apache cTAKES Relation Extractor
[INFO] Apache cTAKES Temporal Information Extraction
[INFO] Apache cTAKES CoReference Resolver
[INFO] ctakes-gui
[INFO] Apache cTAKES Resources dictionary-lookup
[INFO] Apache cTAKES dictionary lookup
[INFO] Apache cTAKES Resources drug-ner
[INFO] Apache cTAKES Drug NER
[INFO] Apache cTAKES Resources side-effect
[INFO] Apache cTAKES Side Effects
[INFO] Apache cTAKES Resources smoking-status
[INFO] Apache cTAKES Smoking Status
[INFO] Apache cTAKES Resources assertion-zoner
[INFO] Apache cTAKES Assertion's zoner
[INFO] ctakes-examples-res
[INFO] ctakes-examples
[INFO] Apache cTAKES Resources ctakes-ytex-res
[INFO] Apache cTAKES YTEX
[INFO] Apache cTAKES YTEX UIMA
[INFO] Apache cTAKES YTEX Web
[INFO] Apache cTAKES Distribution
[INFO] Apache cTAKES Regression-test
[INFO] Apache cTAKES template filler
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES 4.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes ---
[INFO]
[INFO] --- maven-site-plugin:3.1:attach-descriptor (attach-descriptor) @ ctakes ---
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building ctakes-gui-res 4.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-gui-res ---
[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-gui-res ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 85 resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-gui-res ---
[INFO] No sources to compile
[INFO]
[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-gui-res ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-gui-res\src\test\resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-gui-res ---
[INFO] Nothing to compile - all classes are up to date
[INFO]
[INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @ ctakes-gui-res ---
[INFO] Surefire report directory: C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-gui-res\target\surefire-reports
-------------------------------------------------------
T E S T S
-------------------------------------------------------
Results :
Tests run: 0, Failures: 0, Errors: 0, Skipped: 0
[INFO]
[INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ ctakes-gui-res ---
[INFO] Building jar: C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-gui-res\target\ctakes-gui-res-4.0.1-SNAPSHOT.jar
[INFO]
[INFO] --- maven-site-plugin:3.1:attach-descriptor (attach-descriptor) @ ctakes-gui-res ---
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES Resources coreference 4.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-coreference-res ---
[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-coreference-res ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 53 resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-coreference-res ---
[INFO] No sources to compile
[INFO]
[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-coreference-res ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-coreference-res\src\test\resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-coreference-res ---
[INFO] No sources to compile
[INFO]
[INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @ ctakes-coreference-res ---
[INFO] Surefire report directory: C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-coreference-res\target\surefire-reports
-------------------------------------------------------
T E S T S
-------------------------------------------------------
Results :
Tests run: 0, Failures: 0, Errors: 0, Skipped: 0
[INFO]
[INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ ctakes-coreference-res ---
[INFO] Building jar: C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-coreference-res\target\ctakes-coreference-res-4.0.1-SNAPSHOT.jar
[INFO]
[INFO] --- maven-site-plugin:3.1:attach-descriptor (attach-descriptor) @ ctakes-coreference-res ---
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES Resources temporal 4.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-temporal-res ---
[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-temporal-res ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 24 resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-temporal-res ---
[INFO] No sources to compile
[INFO]
[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-temporal-res ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-temporal-res\src\test\resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-temporal-res ---
[INFO] No sources to compile
[INFO]
[INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @ ctakes-temporal-res ---
[INFO] Surefire report directory: C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-temporal-res\target\surefire-reports
-------------------------------------------------------
T E S T S
-------------------------------------------------------
Results :
Tests run: 0, Failures: 0, Errors: 0, Skipped: 0
[INFO]
[INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ ctakes-temporal-res ---
[INFO] Building jar: C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-temporal-res\target\ctakes-temporal-res-4.0.1-SNAPSHOT.jar
[INFO]
[INFO] --- maven-site-plugin:3.1:attach-descriptor (attach-descriptor) @ ctakes-temporal-res ---
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES Resources relation-extractor 4.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-relation-extractor-res ---
[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-relation-extractor-res ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 10 resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-relation-extractor-res ---
[INFO] No sources to compile
[INFO]
[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-relation-extractor-res ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-relation-extractor-res\src\test\resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-relation-extractor-res ---
[INFO] No sources to compile
[INFO]
[INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @ ctakes-relation-extractor-res ---
[INFO] Surefire report directory: C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-relation-extractor-res\target\surefire-reports
-------------------------------------------------------
T E S T S
-------------------------------------------------------
Results :
Tests run: 0, Failures: 0, Errors: 0, Skipped: 0
[INFO]
[INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ ctakes-relation-extractor-res ---
[INFO] Building jar: C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-relation-extractor-res\target\ctakes-relation-extractor-res-4.0.1-SNAPSHOT.jar
[INFO]
[INFO] --- maven-site-plugin:3.1:attach-descriptor (attach-descriptor) @ ctakes-relation-extractor-res ---
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES Resources dictionary-lookup-fast-res 4.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-dictionary-lookup-fast-res ---
[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-dictionary-lookup-fast-res ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 9 resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-dependency-plugin:2.8:unpack-dependencies (unpack-dependencies-ide) @ ctakes-dictionary-lookup-fast-res ---
[INFO] ctakes-resources-sno_rx-4.0.0.jar already exists in destination.
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-dictionary-lookup-fast-res ---
[INFO] No sources to compile
[INFO]
[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-dictionary-lookup-fast-res ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-dictionary-lookup-fast-res\src\test\resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-dictionary-lookup-fast-res ---
[INFO] No sources to compile
[INFO]
[INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @ ctakes-dictionary-lookup-fast-res ---
[INFO] Surefire report directory: C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-dictionary-lookup-fast-res\target\surefire-reports
-------------------------------------------------------
T E S T S
-------------------------------------------------------
Results :
Tests run: 0, Failures: 0, Errors: 0, Skipped: 0
[INFO]
[INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ ctakes-dictionary-lookup-fast-res ---
[INFO] Building jar: C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-dictionary-lookup-fast-res\target\ctakes-dictionary-lookup-fast-res-4.0.1-SNAPSHOT.jar
[INFO]
[INFO] --- maven-site-plugin:3.1:attach-descriptor (attach-descriptor) @ ctakes-dictionary-lookup-fast-res ---
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES Resources core 4.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-core-res ---
[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-core-res ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 24 resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-core-res ---
[INFO] Nothing to compile - all classes are up to date
[INFO]
[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-core-res ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-core-res\src\test\resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-core-res ---
[INFO] Nothing to compile - all classes are up to date
[INFO]
[INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @ ctakes-core-res ---
[INFO] Surefire report directory: C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-core-res\target\surefire-reports
-------------------------------------------------------
T E S T S
-------------------------------------------------------
Results :
Tests run: 0, Failures: 0, Errors: 0, Skipped: 0
[INFO]
[INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ ctakes-core-res ---
[INFO] Building jar: C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-core-res\target\ctakes-core-res-4.0.1-SNAPSHOT.jar
[INFO]
[INFO] --- maven-site-plugin:3.1:attach-descriptor (attach-descriptor) @ ctakes-core-res ---
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES common type system 4.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-type-system ---
[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-type-system ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 3 resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- jcasgen-maven-plugin:2.10.2:generate (default) @ ctakes-type-system ---
[INFO] JCasGen: Found descriptor 'C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-type-system\src\main\resources\org\apache\ctakes\typesystem\types\TypeSystem.xml'
[INFO] JCasGen: Limiting generation to descriptors in 'C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-type-system'
[INFO] JCasGen: Output going to 'C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-type-system\target\generated-sources\jcasgen'
[INFO] JCasGen: Reading the XML TAE descriptor, and creating types, for xml input file 'C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-type-system\target\jcasgen\typesystem.xml'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.AnatomicalSite'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.AnatomicalSite_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Attribute'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Attribute_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.BodyLaterality'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.BodyLaterality_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.BodySide'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.BodySide_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Course'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Course_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Date'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Date_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Element'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Element_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Entity'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Entity_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Event'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Event_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.EventProperties'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.EventProperties_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Lab'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Lab_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.LabDeltaFlag'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.LabDeltaFlag_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.LabReferenceRange'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.LabReferenceRange_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.LabValue'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.LabValue_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Medication'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Medication_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.MedicationDosage'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.MedicationDosage_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.MedicationDuration'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.MedicationDuration_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.MedicationForm'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.MedicationForm_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.MedicationFrequency'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.MedicationFrequency_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.MedicationRoute'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.MedicationRoute_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.MedicationStatusChange'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.MedicationStatusChange_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.MedicationStrength'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.MedicationStrength_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.OntologyConcept'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.OntologyConcept_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Procedure'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Procedure_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.ProcedureDevice'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.ProcedureDevice_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.ProcedureMethod'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.ProcedureMethod_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Severity'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Severity_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.SignSymptom'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.SignSymptom_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Time'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Time_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.UmlsConcept'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.UmlsConcept_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.Affects'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.Affects_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.AffectsTextRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.AffectsTextRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.AspectualTextRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.AspectualTextRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.AttributeRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.AttributeRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.BinaryTextRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.BinaryTextRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.CausesBringsAbout'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.CausesBringsAbout_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.CausesBringsAboutTextRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.CausesBringsAboutTextRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.CollectionTextRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.CollectionTextRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.CollectionTextRelationIdentifiedAnnotationRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.CollectionTextRelationIdentifiedAnnotationRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.ComplicatesDisrupts'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.ComplicatesDisrupts_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.ComplicatesDisruptsTextRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.ComplicatesDisruptsTextRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.Contraindicates'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.Contraindicates_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.ContraindicatesTextRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.ContraindicatesTextRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.CoreferenceRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.CoreferenceRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.DegreeOf'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.DegreeOf_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.DegreeOfTextRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.DegreeOfTextRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.Diagnoses'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.Diagnoses_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.DiagnosesTextRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.DiagnosesTextRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.ElementRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.ElementRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.Indicates'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.Indicates_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.IndicatesTextRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.IndicatesTextRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.IsIndicatedFor'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.IsIndicatedFor_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.IsIndicatedForTextRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.IsIndicatedForTextRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.LocationOf'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.LocationOf_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.LocationOfTextRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.LocationOfTextRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.ManagesTreats'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.ManagesTreats_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.ManagesTreatsTextRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.ManagesTreatsTextRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.ManifestationOf'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.ManifestationOf_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.ManifestationOfTextRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.ManifestationOfTextRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.Prevents'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.Prevents_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.PreventsTextRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.PreventsTextRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.Relation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.Relation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.RelationArgument'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.RelationArgument_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.ResultOf'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.ResultOf_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.ResultOfTextRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.ResultOfTextRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.TemporalRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.TemporalRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.TemporalTextRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.TemporalTextRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.UMLSRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.UMLSRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.structured.Demographics'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.structured.Demographics_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.structured.DocumentClassification'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.structured.DocumentClassification_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.structured.DocumentID'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.structured.DocumentID_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.structured.DocumentIdPrefix'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.structured.DocumentIdPrefix_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.structured.DocumentPath'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.structured.DocumentPath_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.structured.Metadata'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.structured.Metadata_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.structured.SourceData'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.structured.SourceData_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.ADJP'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.ADJP_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.ADVP'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.ADVP_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.BaseToken'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.BaseToken_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.CONJP'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.CONJP_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.Chunk'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.Chunk_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.ContractionToken'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.ContractionToken_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.INTJ'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.INTJ_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.LST'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.LST_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.Lemma'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.Lemma_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.NP'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.NP_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.NewlineToken'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.NewlineToken_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.NumToken'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.NumToken_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.O'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.O_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.PP'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.PP_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.PRT'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.PRT_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.PunctuationToken'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.PunctuationToken_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.SBAR'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.SBAR_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.StanfordDependency'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.StanfordDependency_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.SymbolToken'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.SymbolToken_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.TerminalTreebankNode'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.TerminalTreebankNode_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.TopTreebankNode'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.TopTreebankNode_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.TreebankNode'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.TreebankNode_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.UCP'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.UCP_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.VP'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.VP_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.WordToken'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.WordToken_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.BodyLateralityModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.BodyLateralityModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.BodySideModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.BodySideModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.ConditionalModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.ConditionalModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.ContextAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.ContextAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.CourseModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.CourseModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.DateAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.DateAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.EntityMention'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.EntityMention_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.EventMention'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.EventMention_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.FractionAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.FractionAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.GenericModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.GenericModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.HistoryOfModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.HistoryOfModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.LabDeltaFlagModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.LabDeltaFlagModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.LabEstimatedModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.LabEstimatedModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.LabInterpretationModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.LabInterpretationModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.LabMention'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.LabMention_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.LabReferenceRangeModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.LabReferenceRangeModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.LabValueModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.LabValueModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.Markable'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.Markable_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationAllergyModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationAllergyModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationDosageModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationDosageModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationDurationModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationDurationModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationEventMention'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationEventMention_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationFormModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationFormModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationFrequencyModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationFrequencyModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationMention'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationMention_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationRouteModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationRouteModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationStatusChangeModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationStatusChangeModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationStrengthModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationStrengthModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.Modifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.Modifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.PersonTitleAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.PersonTitleAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.PolarityModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.PolarityModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.Predicate'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.Predicate_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.ProcedureDeviceModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.ProcedureDeviceModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.ProcedureMention'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.ProcedureMention_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.ProcedureMethodModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.ProcedureMethodModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.RangeAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.RangeAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.RomanNumeralAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.RomanNumeralAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SemanticArgument'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SemanticArgument_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SemanticRoleRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SemanticRoleRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SeverityModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SeverityModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SignSymptomMention'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SignSymptomMention_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SubjectModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SubjectModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.TimeAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.TimeAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.TimeMention'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.TimeMention_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.UncertaintyModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.UncertaintyModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.List'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.List_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.ListEntry'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.ListEntry_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.Paragraph'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.Paragraph_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.Segment'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.Segment_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.Sentence'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.Sentence_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.util.Pair'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.util.Pair_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.util.Pairs'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.util.Pairs_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.util.ProbabilityDistribution'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.util.ProbabilityDistribution_Type'.
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-type-system ---
[INFO] Compiling 322 source files to C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-type-system\target\classes
[INFO]
[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-type-system ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-type-system\src\test\resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-type-system ---
[INFO] No sources to compile
[INFO]
[INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @ ctakes-type-system ---
[INFO] Surefire report directory: C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-type-system\target\surefire-reports
-------------------------------------------------------
T E S T S
-------------------------------------------------------
Results :
Tests run: 0, Failures: 0, Errors: 0, Skipped: 0
[INFO]
[INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ ctakes-type-system ---
[INFO] Building jar: C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-type-system\target\ctakes-type-system-4.0.1-SNAPSHOT.jar
[INFO]
[INFO] --- maven-site-plugin:3.1:attach-descriptor (attach-descriptor) @ ctakes-type-system ---
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES utils 4.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-utils ---
[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-utils ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-utils\src\main\resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-utils ---
[INFO] Nothing to compile - all classes are up to date
[INFO]
[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-utils ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-utils\src\test\resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-utils ---
[INFO] No sources to compile
[INFO]
[INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @ ctakes-utils ---
[INFO] Surefire report directory: C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-utils\target\surefire-reports
-------------------------------------------------------
T E S T S
-------------------------------------------------------
Results :
Tests run: 0, Failures: 0, Errors: 0, Skipped: 0
[INFO]
[INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ ctakes-utils ---
[INFO] Building jar: C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-utils\target\ctakes-utils-4.0.1-SNAPSHOT.jar
[INFO]
[INFO] --- maven-site-plugin:3.1:attach-descriptor (attach-descriptor) @ ctakes-utils ---
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES core 4.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-core ---
[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-core ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-core\src\main\resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-core ---
[INFO] Nothing to compile - all classes are up to date
[INFO]
[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-core ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-core\src\test\resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-core ---
[INFO] Nothing to compile - all classes are up to date
[INFO]
[INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @ ctakes-core ---
[INFO] Surefire report directory: C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-core\target\surefire-reports
-------------------------------------------------------
T E S T S
-------------------------------------------------------
Running org.apache.ctakes.core.ae.SentenceDetectorAnnotatorTest
Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 0.286 sec <<< FAILURE!
Running org.apache.ctakes.core.ae.SimpleSegmentAnnotatorTests
Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 0.017 sec ><<< FAILURE!
Running org.apache.ctakes.core.ae.TestCDASegmentAnnotator
Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 0 sec ><<< FAILURE!
Running org.apache.ctakes.core.ae.TokenizerAnnotatorPTBTests
Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 0 sec ><<< FAILURE!
Running org.apache.ctakes.core.ci.HyphenTextModifierImplTests
Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 0.016 sec ><<< FAILURE!
Results :
Tests in error:
initializationError(org.apache.ctakes.core.ae.SentenceDetectorAnnotatorTest): org/hamcrest/SelfDescribing
initializationError(org.apache.ctakes.core.ae.SimpleSegmentAnnotatorTests): org/hamcrest/SelfDescribing
initializationError(org.apache.ctakes.core.ae.TestCDASegmentAnnotator): org/hamcrest/SelfDescribing
initializationError(org.apache.ctakes.core.ae.TokenizerAnnotatorPTBTests): org/hamcrest/SelfDescribing
initializationError(org.apache.ctakes.core.ci.HyphenTextModifierImplTests): org/hamcrest/SelfDescribing
Tests run: 5, Failures: 0, Errors: 5, Skipped: 0
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ...................................... SUCCESS [ 5.764 s]
[INFO] ctakes-gui-res ..................................... SUCCESS [ 6.106 s]
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [ 7.051 s]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [ 2.113 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [ 0.820 s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [ 3.752 s]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [ 1.339 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [ 12.484 s]
[INFO] Apache cTAKES utils ................................ SUCCESS [ 1.700 s]
[INFO] Apache cTAKES core ................................. FAILURE [ 6.373 s]
[INFO] Apache cTAKES dictionary lookup fast ............... SKIPPED
[INFO] Apache cTAKES document preprocessor ................ SKIPPED
[INFO] Apache cTAKES Resources lvg ........................ SKIPPED
[INFO] Apache cTAKES LVG lexical tools .................... SKIPPED
[INFO] Apache cTAKES Resources ne-contexts ................ SKIPPED
[INFO] Apache cTAKES named entity contexts ................ SKIPPED
[INFO] Apache cTAKES Resources assertion .................. SKIPPED
[INFO] Apache cTAKES Resources constituency-parser ........ SKIPPED
[INFO] Apache cTAKES Constituency Parser .................. SKIPPED
[INFO] Apache cTAKES Resources dependency-parser .......... SKIPPED
[INFO] Apache cTAKES Resources pos-tagger ................. SKIPPED
[INFO] Apache cTAKES part-of-speech tagger ................ SKIPPED
[INFO] Apache cTAKES Dependency Parser .................... SKIPPED
[INFO] Apache cTAKES context dependent tokenizer .......... SKIPPED
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SKIPPED
[INFO] Apache cTAKES chunker .............................. SKIPPED
[INFO] Apache cTAKES Assertion ............................ SKIPPED
[INFO] ctakes-clinical-pipeline-res ....................... SKIPPED
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SKIPPED
[INFO] Apache cTAKES Relation Extractor ................... SKIPPED
[INFO] Apache cTAKES Temporal Information Extraction ...... SKIPPED
[INFO] Apache cTAKES CoReference Resolver ................. SKIPPED
[INFO] ctakes-gui ......................................... SKIPPED
[INFO] Apache cTAKES Resources dictionary-lookup .......... SKIPPED
[INFO] Apache cTAKES dictionary lookup .................... SKIPPED
[INFO] Apache cTAKES Resources drug-ner ................... SKIPPED
[INFO] Apache cTAKES Drug NER ............................. SKIPPED
[INFO] Apache cTAKES Resources side-effect ................ SKIPPED
[INFO] Apache cTAKES Side Effects ......................... SKIPPED
[INFO] Apache cTAKES Resources smoking-status ............. SKIPPED
[INFO] Apache cTAKES Smoking Status ....................... SKIPPED
[INFO] Apache cTAKES Resources assertion-zoner ............ SKIPPED
[INFO] Apache cTAKES Assertion's zoner .................... SKIPPED
[INFO] ctakes-examples-res ................................ SKIPPED
[INFO] ctakes-examples .................................... SKIPPED
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SKIPPED
[INFO] Apache cTAKES YTEX ................................. SKIPPED
[INFO] Apache cTAKES YTEX UIMA ............................ SKIPPED
[INFO] Apache cTAKES YTEX Web ............................. SKIPPED
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... SKIPPED
[INFO] Apache cTAKES template filler ...................... SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 49.189 s
[INFO] Finished at: 2018-03-16T12:03:30+05:30
[INFO] Final Memory: 48M/485M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (default-test) on project ctakes-core: There are test failures.
[ERROR]
[ERROR] Please refer to C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-core\target\surefire-reports for the individual test results.
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-core
How solve it??????
Thanks & Regards
AMAL M
9633746869
This email and any files transmitted with it are confidential and intended solely for the use of the individual or entity to whom they are addressed. If you are not the named addressee you should not disseminate, distribute or copy this e-mail. Please notify the sender or system manager by email immediately if you have received this e-mail by mistake and delete this e-mail from your system. If you are not the intended recipient you are notified that disclosing, copying, distributing or taking any action in reliance on the contents of this information is strictly prohibited and against the law.
RE: Build failure in Ctakes developer installation
Posted by Gandhi Rajan Natarajan <Ga...@arisglobal.com>.
Try disabling test cases and building it. Try using the following command:
"mvn install -Dmaven.test.skip=true"
Regards,
Gandhi
-----Original Message-----
From: amal.m@acolade.co.in [mailto:amal.m@acolade.co.in]
Sent: Friday, March 16, 2018 12:04 PM
To: dev@ctakes.apache.org
Subject: Build failure in Ctakes developer installation
[INFO] Scanning for projects...
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Build Order:
[INFO]
[INFO] Apache cTAKES
[INFO] ctakes-gui-res
[INFO] Apache cTAKES Resources coreference
[INFO] Apache cTAKES Resources temporal
[INFO] Apache cTAKES Resources relation-extractor
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res
[INFO] Apache cTAKES Resources core
[INFO] Apache cTAKES common type system
[INFO] Apache cTAKES utils
[INFO] Apache cTAKES core
[INFO] Apache cTAKES dictionary lookup fast
[INFO] Apache cTAKES document preprocessor
[INFO] Apache cTAKES Resources lvg
[INFO] Apache cTAKES LVG lexical tools
[INFO] Apache cTAKES Resources ne-contexts
[INFO] Apache cTAKES named entity contexts
[INFO] Apache cTAKES Resources assertion
[INFO] Apache cTAKES Resources constituency-parser
[INFO] Apache cTAKES Constituency Parser
[INFO] Apache cTAKES Resources dependency-parser
[INFO] Apache cTAKES Resources pos-tagger
[INFO] Apache cTAKES part-of-speech tagger
[INFO] Apache cTAKES Dependency Parser
[INFO] Apache cTAKES context dependent tokenizer
[INFO] Apache cTAKES Resources ctakes-chunker-res
[INFO] Apache cTAKES chunker
[INFO] Apache cTAKES Assertion
[INFO] ctakes-clinical-pipeline-res
[INFO] Apache cTAKES ctakes-clinical-pipeline
[INFO] Apache cTAKES Relation Extractor
[INFO] Apache cTAKES Temporal Information Extraction
[INFO] Apache cTAKES CoReference Resolver
[INFO] ctakes-gui
[INFO] Apache cTAKES Resources dictionary-lookup
[INFO] Apache cTAKES dictionary lookup
[INFO] Apache cTAKES Resources drug-ner
[INFO] Apache cTAKES Drug NER
[INFO] Apache cTAKES Resources side-effect
[INFO] Apache cTAKES Side Effects
[INFO] Apache cTAKES Resources smoking-status
[INFO] Apache cTAKES Smoking Status
[INFO] Apache cTAKES Resources assertion-zoner
[INFO] Apache cTAKES Assertion's zoner
[INFO] ctakes-examples-res
[INFO] ctakes-examples
[INFO] Apache cTAKES Resources ctakes-ytex-res
[INFO] Apache cTAKES YTEX
[INFO] Apache cTAKES YTEX UIMA
[INFO] Apache cTAKES YTEX Web
[INFO] Apache cTAKES Distribution
[INFO] Apache cTAKES Regression-test
[INFO] Apache cTAKES template filler
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES 4.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes ---
[INFO]
[INFO] --- maven-site-plugin:3.1:attach-descriptor (attach-descriptor) @ ctakes ---
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building ctakes-gui-res 4.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-gui-res ---
[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-gui-res ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 85 resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-gui-res ---
[INFO] No sources to compile
[INFO]
[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-gui-res ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-gui-res\src\test\resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-gui-res ---
[INFO] Nothing to compile - all classes are up to date
[INFO]
[INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @ ctakes-gui-res ---
[INFO] Surefire report directory: C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-gui-res\target\surefire-reports
-------------------------------------------------------
T E S T S
-------------------------------------------------------
Results :
Tests run: 0, Failures: 0, Errors: 0, Skipped: 0
[INFO]
[INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ ctakes-gui-res ---
[INFO] Building jar: C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-gui-res\target\ctakes-gui-res-4.0.1-SNAPSHOT.jar
[INFO]
[INFO] --- maven-site-plugin:3.1:attach-descriptor (attach-descriptor) @ ctakes-gui-res ---
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES Resources coreference 4.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-coreference-res ---
[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-coreference-res ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 53 resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-coreference-res ---
[INFO] No sources to compile
[INFO]
[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-coreference-res ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-coreference-res\src\test\resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-coreference-res ---
[INFO] No sources to compile
[INFO]
[INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @ ctakes-coreference-res ---
[INFO] Surefire report directory: C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-coreference-res\target\surefire-reports
-------------------------------------------------------
T E S T S
-------------------------------------------------------
Results :
Tests run: 0, Failures: 0, Errors: 0, Skipped: 0
[INFO]
[INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ ctakes-coreference-res ---
[INFO] Building jar: C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-coreference-res\target\ctakes-coreference-res-4.0.1-SNAPSHOT.jar
[INFO]
[INFO] --- maven-site-plugin:3.1:attach-descriptor (attach-descriptor) @ ctakes-coreference-res ---
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES Resources temporal 4.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-temporal-res ---
[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-temporal-res ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 24 resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-temporal-res ---
[INFO] No sources to compile
[INFO]
[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-temporal-res ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-temporal-res\src\test\resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-temporal-res ---
[INFO] No sources to compile
[INFO]
[INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @ ctakes-temporal-res ---
[INFO] Surefire report directory: C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-temporal-res\target\surefire-reports
-------------------------------------------------------
T E S T S
-------------------------------------------------------
Results :
Tests run: 0, Failures: 0, Errors: 0, Skipped: 0
[INFO]
[INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ ctakes-temporal-res ---
[INFO] Building jar: C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-temporal-res\target\ctakes-temporal-res-4.0.1-SNAPSHOT.jar
[INFO]
[INFO] --- maven-site-plugin:3.1:attach-descriptor (attach-descriptor) @ ctakes-temporal-res ---
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES Resources relation-extractor 4.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-relation-extractor-res ---
[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-relation-extractor-res ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 10 resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-relation-extractor-res ---
[INFO] No sources to compile
[INFO]
[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-relation-extractor-res ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-relation-extractor-res\src\test\resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-relation-extractor-res ---
[INFO] No sources to compile
[INFO]
[INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @ ctakes-relation-extractor-res ---
[INFO] Surefire report directory: C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-relation-extractor-res\target\surefire-reports
-------------------------------------------------------
T E S T S
-------------------------------------------------------
Results :
Tests run: 0, Failures: 0, Errors: 0, Skipped: 0
[INFO]
[INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ ctakes-relation-extractor-res ---
[INFO] Building jar: C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-relation-extractor-res\target\ctakes-relation-extractor-res-4.0.1-SNAPSHOT.jar
[INFO]
[INFO] --- maven-site-plugin:3.1:attach-descriptor (attach-descriptor) @ ctakes-relation-extractor-res ---
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES Resources dictionary-lookup-fast-res 4.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-dictionary-lookup-fast-res ---
[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-dictionary-lookup-fast-res ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 9 resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-dependency-plugin:2.8:unpack-dependencies (unpack-dependencies-ide) @ ctakes-dictionary-lookup-fast-res ---
[INFO] ctakes-resources-sno_rx-4.0.0.jar already exists in destination.
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-dictionary-lookup-fast-res ---
[INFO] No sources to compile
[INFO]
[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-dictionary-lookup-fast-res ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-dictionary-lookup-fast-res\src\test\resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-dictionary-lookup-fast-res ---
[INFO] No sources to compile
[INFO]
[INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @ ctakes-dictionary-lookup-fast-res ---
[INFO] Surefire report directory: C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-dictionary-lookup-fast-res\target\surefire-reports
-------------------------------------------------------
T E S T S
-------------------------------------------------------
Results :
Tests run: 0, Failures: 0, Errors: 0, Skipped: 0
[INFO]
[INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ ctakes-dictionary-lookup-fast-res ---
[INFO] Building jar: C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-dictionary-lookup-fast-res\target\ctakes-dictionary-lookup-fast-res-4.0.1-SNAPSHOT.jar
[INFO]
[INFO] --- maven-site-plugin:3.1:attach-descriptor (attach-descriptor) @ ctakes-dictionary-lookup-fast-res ---
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES Resources core 4.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-core-res ---
[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-core-res ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 24 resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-core-res ---
[INFO] Nothing to compile - all classes are up to date
[INFO]
[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-core-res ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-core-res\src\test\resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-core-res ---
[INFO] Nothing to compile - all classes are up to date
[INFO]
[INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @ ctakes-core-res ---
[INFO] Surefire report directory: C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-core-res\target\surefire-reports
-------------------------------------------------------
T E S T S
-------------------------------------------------------
Results :
Tests run: 0, Failures: 0, Errors: 0, Skipped: 0
[INFO]
[INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ ctakes-core-res ---
[INFO] Building jar: C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-core-res\target\ctakes-core-res-4.0.1-SNAPSHOT.jar
[INFO]
[INFO] --- maven-site-plugin:3.1:attach-descriptor (attach-descriptor) @ ctakes-core-res ---
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES common type system 4.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-type-system ---
[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-type-system ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 3 resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- jcasgen-maven-plugin:2.10.2:generate (default) @ ctakes-type-system ---
[INFO] JCasGen: Found descriptor 'C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-type-system\src\main\resources\org\apache\ctakes\typesystem\types\TypeSystem.xml'
[INFO] JCasGen: Limiting generation to descriptors in 'C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-type-system'
[INFO] JCasGen: Output going to 'C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-type-system\target\generated-sources\jcasgen'
[INFO] JCasGen: Reading the XML TAE descriptor, and creating types, for xml input file 'C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-type-system\target\jcasgen\typesystem.xml'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.AnatomicalSite'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.AnatomicalSite_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Attribute'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Attribute_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.BodyLaterality'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.BodyLaterality_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.BodySide'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.BodySide_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Course'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Course_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Date'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Date_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Element'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Element_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Entity'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Entity_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Event'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Event_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.EventProperties'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.EventProperties_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Lab'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Lab_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.LabDeltaFlag'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.LabDeltaFlag_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.LabReferenceRange'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.LabReferenceRange_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.LabValue'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.LabValue_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Medication'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Medication_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.MedicationDosage'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.MedicationDosage_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.MedicationDuration'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.MedicationDuration_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.MedicationForm'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.MedicationForm_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.MedicationFrequency'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.MedicationFrequency_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.MedicationRoute'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.MedicationRoute_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.MedicationStatusChange'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.MedicationStatusChange_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.MedicationStrength'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.MedicationStrength_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.OntologyConcept'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.OntologyConcept_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Procedure'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Procedure_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.ProcedureDevice'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.ProcedureDevice_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.ProcedureMethod'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.ProcedureMethod_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Severity'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Severity_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.SignSymptom'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.SignSymptom_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Time'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Time_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.UmlsConcept'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.UmlsConcept_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.Affects'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.Affects_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.AffectsTextRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.AffectsTextRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.AspectualTextRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.AspectualTextRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.AttributeRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.AttributeRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.BinaryTextRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.BinaryTextRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.CausesBringsAbout'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.CausesBringsAbout_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.CausesBringsAboutTextRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.CausesBringsAboutTextRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.CollectionTextRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.CollectionTextRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.CollectionTextRelationIdentifiedAnnotationRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.CollectionTextRelationIdentifiedAnnotationRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.ComplicatesDisrupts'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.ComplicatesDisrupts_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.ComplicatesDisruptsTextRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.ComplicatesDisruptsTextRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.Contraindicates'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.Contraindicates_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.ContraindicatesTextRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.ContraindicatesTextRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.CoreferenceRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.CoreferenceRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.DegreeOf'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.DegreeOf_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.DegreeOfTextRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.DegreeOfTextRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.Diagnoses'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.Diagnoses_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.DiagnosesTextRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.DiagnosesTextRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.ElementRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.ElementRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.Indicates'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.Indicates_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.IndicatesTextRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.IndicatesTextRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.IsIndicatedFor'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.IsIndicatedFor_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.IsIndicatedForTextRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.IsIndicatedForTextRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.LocationOf'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.LocationOf_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.LocationOfTextRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.LocationOfTextRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.ManagesTreats'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.ManagesTreats_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.ManagesTreatsTextRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.ManagesTreatsTextRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.ManifestationOf'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.ManifestationOf_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.ManifestationOfTextRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.ManifestationOfTextRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.Prevents'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.Prevents_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.PreventsTextRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.PreventsTextRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.Relation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.Relation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.RelationArgument'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.RelationArgument_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.ResultOf'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.ResultOf_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.ResultOfTextRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.ResultOfTextRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.TemporalRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.TemporalRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.TemporalTextRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.TemporalTextRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.UMLSRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.UMLSRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.structured.Demographics'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.structured.Demographics_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.structured.DocumentClassification'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.structured.DocumentClassification_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.structured.DocumentID'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.structured.DocumentID_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.structured.DocumentIdPrefix'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.structured.DocumentIdPrefix_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.structured.DocumentPath'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.structured.DocumentPath_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.structured.Metadata'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.structured.Metadata_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.structured.SourceData'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.structured.SourceData_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.ADJP'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.ADJP_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.ADVP'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.ADVP_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.BaseToken'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.BaseToken_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.CONJP'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.CONJP_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.Chunk'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.Chunk_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.ContractionToken'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.ContractionToken_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.INTJ'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.INTJ_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.LST'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.LST_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.Lemma'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.Lemma_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.NP'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.NP_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.NewlineToken'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.NewlineToken_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.NumToken'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.NumToken_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.O'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.O_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.PP'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.PP_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.PRT'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.PRT_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.PunctuationToken'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.PunctuationToken_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.SBAR'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.SBAR_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.StanfordDependency'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.StanfordDependency_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.SymbolToken'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.SymbolToken_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.TerminalTreebankNode'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.TerminalTreebankNode_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.TopTreebankNode'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.TopTreebankNode_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.TreebankNode'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.TreebankNode_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.UCP'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.UCP_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.VP'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.VP_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.WordToken'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.WordToken_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.BodyLateralityModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.BodyLateralityModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.BodySideModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.BodySideModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.ConditionalModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.ConditionalModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.ContextAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.ContextAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.CourseModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.CourseModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.DateAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.DateAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.EntityMention'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.EntityMention_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.EventMention'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.EventMention_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.FractionAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.FractionAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.GenericModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.GenericModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.HistoryOfModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.HistoryOfModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.LabDeltaFlagModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.LabDeltaFlagModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.LabEstimatedModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.LabEstimatedModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.LabInterpretationModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.LabInterpretationModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.LabMention'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.LabMention_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.LabReferenceRangeModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.LabReferenceRangeModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.LabValueModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.LabValueModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.Markable'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.Markable_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationAllergyModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationAllergyModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationDosageModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationDosageModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationDurationModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationDurationModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationEventMention'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationEventMention_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationFormModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationFormModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationFrequencyModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationFrequencyModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationMention'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationMention_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationRouteModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationRouteModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationStatusChangeModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationStatusChangeModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationStrengthModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationStrengthModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.Modifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.Modifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.PersonTitleAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.PersonTitleAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.PolarityModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.PolarityModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.Predicate'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.Predicate_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.ProcedureDeviceModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.ProcedureDeviceModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.ProcedureMention'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.ProcedureMention_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.ProcedureMethodModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.ProcedureMethodModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.RangeAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.RangeAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.RomanNumeralAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.RomanNumeralAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SemanticArgument'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SemanticArgument_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SemanticRoleRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SemanticRoleRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SeverityModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SeverityModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SignSymptomMention'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SignSymptomMention_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SubjectModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SubjectModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.TimeAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.TimeAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.TimeMention'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.TimeMention_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.UncertaintyModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.UncertaintyModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.List'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.List_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.ListEntry'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.ListEntry_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.Paragraph'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.Paragraph_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.Segment'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.Segment_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.Sentence'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.Sentence_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.util.Pair'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.util.Pair_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.util.Pairs'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.util.Pairs_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.util.ProbabilityDistribution'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.util.ProbabilityDistribution_Type'.
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-type-system ---
[INFO] Compiling 322 source files to C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-type-system\target\classes
[INFO]
[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-type-system ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-type-system\src\test\resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-type-system ---
[INFO] No sources to compile
[INFO]
[INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @ ctakes-type-system ---
[INFO] Surefire report directory: C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-type-system\target\surefire-reports
-------------------------------------------------------
T E S T S
-------------------------------------------------------
Results :
Tests run: 0, Failures: 0, Errors: 0, Skipped: 0
[INFO]
[INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ ctakes-type-system ---
[INFO] Building jar: C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-type-system\target\ctakes-type-system-4.0.1-SNAPSHOT.jar
[INFO]
[INFO] --- maven-site-plugin:3.1:attach-descriptor (attach-descriptor) @ ctakes-type-system ---
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES utils 4.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-utils ---
[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-utils ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-utils\src\main\resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-utils ---
[INFO] Nothing to compile - all classes are up to date
[INFO]
[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-utils ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-utils\src\test\resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-utils ---
[INFO] No sources to compile
[INFO]
[INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @ ctakes-utils ---
[INFO] Surefire report directory: C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-utils\target\surefire-reports
-------------------------------------------------------
T E S T S
-------------------------------------------------------
Results :
Tests run: 0, Failures: 0, Errors: 0, Skipped: 0
[INFO]
[INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ ctakes-utils ---
[INFO] Building jar: C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-utils\target\ctakes-utils-4.0.1-SNAPSHOT.jar
[INFO]
[INFO] --- maven-site-plugin:3.1:attach-descriptor (attach-descriptor) @ ctakes-utils ---
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES core 4.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-core ---
[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-core ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-core\src\main\resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-core ---
[INFO] Nothing to compile - all classes are up to date
[INFO]
[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-core ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-core\src\test\resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-core ---
[INFO] Nothing to compile - all classes are up to date
[INFO]
[INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @ ctakes-core ---
[INFO] Surefire report directory: C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-core\target\surefire-reports
-------------------------------------------------------
T E S T S
-------------------------------------------------------
Running org.apache.ctakes.core.ae.SentenceDetectorAnnotatorTest
Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 0.286 sec <<< FAILURE!
Running org.apache.ctakes.core.ae.SimpleSegmentAnnotatorTests
Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 0.017 sec <<< FAILURE!
Running org.apache.ctakes.core.ae.TestCDASegmentAnnotator
Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 0 sec <<< FAILURE!
Running org.apache.ctakes.core.ae.TokenizerAnnotatorPTBTests
Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 0 sec <<< FAILURE!
Running org.apache.ctakes.core.ci.HyphenTextModifierImplTests
Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 0.016 sec <<< FAILURE!
Results :
Tests in error:
initializationError(org.apache.ctakes.core.ae.SentenceDetectorAnnotatorTest): org/hamcrest/SelfDescribing
initializationError(org.apache.ctakes.core.ae.SimpleSegmentAnnotatorTests): org/hamcrest/SelfDescribing
initializationError(org.apache.ctakes.core.ae.TestCDASegmentAnnotator): org/hamcrest/SelfDescribing
initializationError(org.apache.ctakes.core.ae.TokenizerAnnotatorPTBTests): org/hamcrest/SelfDescribing
initializationError(org.apache.ctakes.core.ci.HyphenTextModifierImplTests): org/hamcrest/SelfDescribing
Tests run: 5, Failures: 0, Errors: 5, Skipped: 0
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ...................................... SUCCESS [ 5.764 s]
[INFO] ctakes-gui-res ..................................... SUCCESS [ 6.106 s]
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [ 7.051 s]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [ 2.113 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [ 0.820 s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [ 3.752 s]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [ 1.339 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [ 12.484 s]
[INFO] Apache cTAKES utils ................................ SUCCESS [ 1.700 s]
[INFO] Apache cTAKES core ................................. FAILURE [ 6.373 s]
[INFO] Apache cTAKES dictionary lookup fast ............... SKIPPED
[INFO] Apache cTAKES document preprocessor ................ SKIPPED
[INFO] Apache cTAKES Resources lvg ........................ SKIPPED
[INFO] Apache cTAKES LVG lexical tools .................... SKIPPED
[INFO] Apache cTAKES Resources ne-contexts ................ SKIPPED
[INFO] Apache cTAKES named entity contexts ................ SKIPPED
[INFO] Apache cTAKES Resources assertion .................. SKIPPED
[INFO] Apache cTAKES Resources constituency-parser ........ SKIPPED
[INFO] Apache cTAKES Constituency Parser .................. SKIPPED
[INFO] Apache cTAKES Resources dependency-parser .......... SKIPPED
[INFO] Apache cTAKES Resources pos-tagger ................. SKIPPED
[INFO] Apache cTAKES part-of-speech tagger ................ SKIPPED
[INFO] Apache cTAKES Dependency Parser .................... SKIPPED
[INFO] Apache cTAKES context dependent tokenizer .......... SKIPPED
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SKIPPED
[INFO] Apache cTAKES chunker .............................. SKIPPED
[INFO] Apache cTAKES Assertion ............................ SKIPPED
[INFO] ctakes-clinical-pipeline-res ....................... SKIPPED
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SKIPPED
[INFO] Apache cTAKES Relation Extractor ................... SKIPPED
[INFO] Apache cTAKES Temporal Information Extraction ...... SKIPPED
[INFO] Apache cTAKES CoReference Resolver ................. SKIPPED
[INFO] ctakes-gui ......................................... SKIPPED
[INFO] Apache cTAKES Resources dictionary-lookup .......... SKIPPED
[INFO] Apache cTAKES dictionary lookup .................... SKIPPED
[INFO] Apache cTAKES Resources drug-ner ................... SKIPPED
[INFO] Apache cTAKES Drug NER ............................. SKIPPED
[INFO] Apache cTAKES Resources side-effect ................ SKIPPED
[INFO] Apache cTAKES Side Effects ......................... SKIPPED
[INFO] Apache cTAKES Resources smoking-status ............. SKIPPED
[INFO] Apache cTAKES Smoking Status ....................... SKIPPED
[INFO] Apache cTAKES Resources assertion-zoner ............ SKIPPED
[INFO] Apache cTAKES Assertion's zoner .................... SKIPPED
[INFO] ctakes-examples-res ................................ SKIPPED
[INFO] ctakes-examples .................................... SKIPPED
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SKIPPED
[INFO] Apache cTAKES YTEX ................................. SKIPPED
[INFO] Apache cTAKES YTEX UIMA ............................ SKIPPED
[INFO] Apache cTAKES YTEX Web ............................. SKIPPED
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... SKIPPED
[INFO] Apache cTAKES template filler ...................... SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 49.189 s
[INFO] Finished at: 2018-03-16T12:03:30+05:30
[INFO] Final Memory: 48M/485M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (default-test) on project ctakes-core: There are test failures.
[ERROR]
[ERROR] Please refer to C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-core\target\surefire-reports for the individual test results.
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-core
How solve it??????
Thanks & Regards
AMAL M
9633746869
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