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Posted to user@flink.apache.org by Michele Bertoni <mi...@mail.polimi.it> on 2015/08/27 11:49:55 UTC

Re: problem with union

Hi everybody,
I am still waiting for version 0.9.1 to solve this problem, any idea on when it will be released?


Thanks
Best,

michele




Il giorno 15/lug/2015, alle ore 15:58, Maximilian Michels <mx...@apache.org>> ha scritto:

I was able to reproduce this problem. It turns out, this has already been fixed in the snapshot version: https://issues.apache.org/jira/browse/FLINK-2229

The fix will be included in the upcoming 0.9.1 release. Thank you again for reporting!

Kind regards,
Max

On Wed, Jul 15, 2015 at 11:33 AM, Maximilian Michels <mx...@apache.org>> wrote:
Hi Michele,

Thanks for reporting the problem. It seems like we changed the way we compare generic types like your GValue type. I'm debugging that now. We can get a fix in for the 0.9.1 release.

Cheers,
Max

On Tue, Jul 14, 2015 at 5:35 PM, Michele Bertoni <mi...@mail.polimi.it>> wrote:
Hi everybody, this discussion started in an other thread about a problem in union, but you said it was a different error then i am opening a new topic

I am doing the union of two dataset and I am getting this error




Exception in thread "main" org.apache.flink.api.common.InvalidProgramException: Cannot union inputs of different types. Input1=scala.Tuple6(_1: Long, _2: String, _3: Long, _4: Long, _5: Character, _6: ObjectArrayTypeInfo<GenericType<it.polimi.genomics.core.DataTypes.GValue>>), input2=scala.Tuple6(_1: Long, _2: String, _3: Long, _4: Long, _5: Character, _6: ObjectArrayTypeInfo<GenericType<it.polimi.genomics.core.DataTypes.GValue>>)
        at org.apache.flink.api.java.operators.UnionOperator.<init>(UnionOperator.java:46)
        at org.apache.flink.api.scala.DataSet.union(DataSet.scala:1101)
        at it.polimi.genomics.flink.FlinkImplementation.operator.region.GenometricCover2$.apply(GenometricCover2.scala:125)
        ...




Input1=
scala.Tuple6(_1: Long, _2: String, _3: Long, _4: Long, _5: Character, _6: ObjectArrayTypeInfo<GenericType<it.polimi.genomics.core.DataTypes.GValue>>)
input2=
scala.Tuple6(_1: Long, _2: String, _3: Long, _4: Long, _5: Character, _6: ObjectArrayTypeInfo<GenericType<it.polimi.genomics.core.DataTypes.GValue>>)


as you can see the two datasets have the same type
this error only happens with a custom data type (e.g. i am using an array of GValue, an array of Int or Double works)

in the last flink version it was working (milestone and snapshot) now in 0.9.0 it is not

what can it be?


thanks for help

cheers,
Michele

Re: problem with union

Posted by Ufuk Celebi <uc...@apache.org>.
Release vote just started. If everything works, the release should be out
on Monday.

If you like, you can use the release candidate version and contribute to
the release testing. ;)

Add this to your POM:

<repository>
  <id>rc0</id>
  <name>Flink 0.9.1 RC0</name>
  <url>
https://repository.apache.org/content/repositories/orgapacheflink-1043</url>
</repository>

Then you can use 0.9.1 as Flink version.

If you do this, feel free to post to the dev list vote thread.

– Ufuk


On Thu, Aug 27, 2015 at 12:09 PM, Stephan Ewen <se...@apache.org> wrote:

> I think this commit fixed it in the 0.9 branch
> (c7e868416a5b8f61489a221ad3822dea1366d887) so it should be good in the
> release.
>
> On Thu, Aug 27, 2015 at 11:52 AM, Chiwan Park <ch...@apache.org>
> wrote:
>
>> Hi Michele,
>>
>> We’re doing release process for 0.9.1. Ufuk Celebi will start vote for
>> 0.9.1 release soon.
>>
>> Regards,
>> Chiwan Park
>>
>> > On Aug 27, 2015, at 6:49 PM, Michele Bertoni <
>> michele1.bertoni@mail.polimi.it> wrote:
>> >
>> > Hi everybody,
>> > I am still waiting for version 0.9.1 to solve this problem, any idea on
>> when it will be released?
>> >
>> >
>> > Thanks
>> > Best,
>> >
>> > michele
>> >
>> >
>> >
>> >
>> >> Il giorno 15/lug/2015, alle ore 15:58, Maximilian Michels <
>> mxm@apache.org> ha scritto:
>> >>
>> >> I was able to reproduce this problem. It turns out, this has already
>> been fixed in the snapshot version:
>> https://issues.apache.org/jira/browse/FLINK-2229
>> >>
>> >> The fix will be included in the upcoming 0.9.1 release. Thank you
>> again for reporting!
>> >>
>> >> Kind regards,
>> >> Max
>> >>
>> >> On Wed, Jul 15, 2015 at 11:33 AM, Maximilian Michels <mx...@apache.org>
>> wrote:
>> >> Hi Michele,
>> >>
>> >> Thanks for reporting the problem. It seems like we changed the way we
>> compare generic types like your GValue type. I'm debugging that now. We can
>> get a fix in for the 0.9.1 release.
>> >>
>> >> Cheers,
>> >> Max
>> >>
>> >> On Tue, Jul 14, 2015 at 5:35 PM, Michele Bertoni <
>> michele1.bertoni@mail.polimi.it> wrote:
>> >> Hi everybody, this discussion started in an other thread about a
>> problem in union, but you said it was a different error then i am opening a
>> new topic
>> >>
>> >> I am doing the union of two dataset and I am getting this error
>> >>
>> >>
>> >>
>> >>
>> >> Exception in thread "main"
>> org.apache.flink.api.common.InvalidProgramException: Cannot union inputs of
>> different types. Input1=scala.Tuple6(_1: Long, _2: String, _3: Long, _4:
>> Long, _5: Character, _6:
>> ObjectArrayTypeInfo<GenericType<it.polimi.genomics.core.DataTypes.GValue>>),
>> input2=scala.Tuple6(_1: Long, _2: String, _3: Long, _4: Long, _5:
>> Character, _6:
>> ObjectArrayTypeInfo<GenericType<it.polimi.genomics.core.DataTypes.GValue>>)
>> >>         at
>> org.apache.flink.api.java.operators.UnionOperator.<init>(UnionOperator.java:46)
>> >>         at org.apache.flink.api.scala.DataSet.union(DataSet.scala:1101)
>> >>         at
>> it.polimi.genomics.flink.FlinkImplementation.operator.region.GenometricCover2$.apply(GenometricCover2.scala:125)
>> >>         ...
>> >>
>> >>
>> >>
>> >>
>> >> Input1=
>> >> scala.Tuple6(_1: Long, _2: String, _3: Long, _4: Long, _5: Character,
>> _6:
>> ObjectArrayTypeInfo<GenericType<it.polimi.genomics.core.DataTypes.GValue>>)
>> >> input2=
>> >> scala.Tuple6(_1: Long, _2: String, _3: Long, _4: Long, _5: Character,
>> _6:
>> ObjectArrayTypeInfo<GenericType<it.polimi.genomics.core.DataTypes.GValue>>)
>> >>
>> >>
>> >> as you can see the two datasets have the same type
>> >> this error only happens with a custom data type (e.g. i am using an
>> array of GValue, an array of Int or Double works)
>> >>
>> >> in the last flink version it was working (milestone and snapshot) now
>> in 0.9.0 it is not
>> >>
>> >> what can it be?
>> >>
>> >>
>> >> thanks for help
>> >>
>> >> cheers,
>> >> Michele
>> >>
>> >>
>> >
>>
>>
>>
>>
>>
>>
>

Re: problem with union

Posted by Stephan Ewen <se...@apache.org>.
I think this commit fixed it in the 0.9 branch
(c7e868416a5b8f61489a221ad3822dea1366d887) so it should be good in the
release.

On Thu, Aug 27, 2015 at 11:52 AM, Chiwan Park <ch...@apache.org> wrote:

> Hi Michele,
>
> We’re doing release process for 0.9.1. Ufuk Celebi will start vote for
> 0.9.1 release soon.
>
> Regards,
> Chiwan Park
>
> > On Aug 27, 2015, at 6:49 PM, Michele Bertoni <
> michele1.bertoni@mail.polimi.it> wrote:
> >
> > Hi everybody,
> > I am still waiting for version 0.9.1 to solve this problem, any idea on
> when it will be released?
> >
> >
> > Thanks
> > Best,
> >
> > michele
> >
> >
> >
> >
> >> Il giorno 15/lug/2015, alle ore 15:58, Maximilian Michels <
> mxm@apache.org> ha scritto:
> >>
> >> I was able to reproduce this problem. It turns out, this has already
> been fixed in the snapshot version:
> https://issues.apache.org/jira/browse/FLINK-2229
> >>
> >> The fix will be included in the upcoming 0.9.1 release. Thank you again
> for reporting!
> >>
> >> Kind regards,
> >> Max
> >>
> >> On Wed, Jul 15, 2015 at 11:33 AM, Maximilian Michels <mx...@apache.org>
> wrote:
> >> Hi Michele,
> >>
> >> Thanks for reporting the problem. It seems like we changed the way we
> compare generic types like your GValue type. I'm debugging that now. We can
> get a fix in for the 0.9.1 release.
> >>
> >> Cheers,
> >> Max
> >>
> >> On Tue, Jul 14, 2015 at 5:35 PM, Michele Bertoni <
> michele1.bertoni@mail.polimi.it> wrote:
> >> Hi everybody, this discussion started in an other thread about a
> problem in union, but you said it was a different error then i am opening a
> new topic
> >>
> >> I am doing the union of two dataset and I am getting this error
> >>
> >>
> >>
> >>
> >> Exception in thread "main"
> org.apache.flink.api.common.InvalidProgramException: Cannot union inputs of
> different types. Input1=scala.Tuple6(_1: Long, _2: String, _3: Long, _4:
> Long, _5: Character, _6:
> ObjectArrayTypeInfo<GenericType<it.polimi.genomics.core.DataTypes.GValue>>),
> input2=scala.Tuple6(_1: Long, _2: String, _3: Long, _4: Long, _5:
> Character, _6:
> ObjectArrayTypeInfo<GenericType<it.polimi.genomics.core.DataTypes.GValue>>)
> >>         at
> org.apache.flink.api.java.operators.UnionOperator.<init>(UnionOperator.java:46)
> >>         at org.apache.flink.api.scala.DataSet.union(DataSet.scala:1101)
> >>         at
> it.polimi.genomics.flink.FlinkImplementation.operator.region.GenometricCover2$.apply(GenometricCover2.scala:125)
> >>         ...
> >>
> >>
> >>
> >>
> >> Input1=
> >> scala.Tuple6(_1: Long, _2: String, _3: Long, _4: Long, _5: Character,
> _6:
> ObjectArrayTypeInfo<GenericType<it.polimi.genomics.core.DataTypes.GValue>>)
> >> input2=
> >> scala.Tuple6(_1: Long, _2: String, _3: Long, _4: Long, _5: Character,
> _6:
> ObjectArrayTypeInfo<GenericType<it.polimi.genomics.core.DataTypes.GValue>>)
> >>
> >>
> >> as you can see the two datasets have the same type
> >> this error only happens with a custom data type (e.g. i am using an
> array of GValue, an array of Int or Double works)
> >>
> >> in the last flink version it was working (milestone and snapshot) now
> in 0.9.0 it is not
> >>
> >> what can it be?
> >>
> >>
> >> thanks for help
> >>
> >> cheers,
> >> Michele
> >>
> >>
> >
>
>
>
>
>
>

Re: problem with union

Posted by Chiwan Park <ch...@apache.org>.
Hi Michele,

We’re doing release process for 0.9.1. Ufuk Celebi will start vote for 0.9.1 release soon.

Regards,
Chiwan Park

> On Aug 27, 2015, at 6:49 PM, Michele Bertoni <mi...@mail.polimi.it> wrote:
> 
> Hi everybody,
> I am still waiting for version 0.9.1 to solve this problem, any idea on when it will be released?
> 
> 
> Thanks
> Best,
> 
> michele
> 
> 
> 
> 
>> Il giorno 15/lug/2015, alle ore 15:58, Maximilian Michels <mx...@apache.org> ha scritto:
>> 
>> I was able to reproduce this problem. It turns out, this has already been fixed in the snapshot version: https://issues.apache.org/jira/browse/FLINK-2229
>> 
>> The fix will be included in the upcoming 0.9.1 release. Thank you again for reporting! 
>> 
>> Kind regards,
>> Max
>> 
>> On Wed, Jul 15, 2015 at 11:33 AM, Maximilian Michels <mx...@apache.org> wrote:
>> Hi Michele,
>> 
>> Thanks for reporting the problem. It seems like we changed the way we compare generic types like your GValue type. I'm debugging that now. We can get a fix in for the 0.9.1 release.
>> 
>> Cheers,
>> Max
>> 
>> On Tue, Jul 14, 2015 at 5:35 PM, Michele Bertoni <mi...@mail.polimi.it> wrote:
>> Hi everybody, this discussion started in an other thread about a problem in union, but you said it was a different error then i am opening a new topic
>> 
>> I am doing the union of two dataset and I am getting this error
>> 
>> 
>> 
>> 
>> Exception in thread "main" org.apache.flink.api.common.InvalidProgramException: Cannot union inputs of different types. Input1=scala.Tuple6(_1: Long, _2: String, _3: Long, _4: Long, _5: Character, _6: ObjectArrayTypeInfo<GenericType<it.polimi.genomics.core.DataTypes.GValue>>), input2=scala.Tuple6(_1: Long, _2: String, _3: Long, _4: Long, _5: Character, _6: ObjectArrayTypeInfo<GenericType<it.polimi.genomics.core.DataTypes.GValue>>)
>>         at org.apache.flink.api.java.operators.UnionOperator.<init>(UnionOperator.java:46)
>>         at org.apache.flink.api.scala.DataSet.union(DataSet.scala:1101)
>>         at it.polimi.genomics.flink.FlinkImplementation.operator.region.GenometricCover2$.apply(GenometricCover2.scala:125)
>>         ...
>> 
>> 
>> 
>> 
>> Input1=
>> scala.Tuple6(_1: Long, _2: String, _3: Long, _4: Long, _5: Character, _6: ObjectArrayTypeInfo<GenericType<it.polimi.genomics.core.DataTypes.GValue>>)
>> input2=
>> scala.Tuple6(_1: Long, _2: String, _3: Long, _4: Long, _5: Character, _6: ObjectArrayTypeInfo<GenericType<it.polimi.genomics.core.DataTypes.GValue>>)
>> 
>> 
>> as you can see the two datasets have the same type
>> this error only happens with a custom data type (e.g. i am using an array of GValue, an array of Int or Double works)
>> 
>> in the last flink version it was working (milestone and snapshot) now in 0.9.0 it is not
>> 
>> what can it be?
>> 
>> 
>> thanks for help
>> 
>> cheers,
>> Michele
>> 
>> 
>